Citrus Sinensis ID: 001578

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050
Protein Sequence
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDRINIASQNRGGAGCSTSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVAALSSYDD
Secondary Structure (PSIPRED)
cccccHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHccccccHHHHHcccHHHHcHHHHHHHHHHHHHHcccccccHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHcHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccEEHHHccHHHHHcccccccccccccHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEEccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHcccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccHHEcccccccccccccHHHHcccHHHHccccccHHHHHHHcccccccccccccccHHcccccccccHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHccHHHHHcccHHHHHHHHHHHHHccccHHHHHHHccHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccEccHHHHHHHHHHHHHHccccccEEEEHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccEEEEEEcccccccccEEccEEEEEEccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHEEccccc
Coil and Loop (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGcafsalgrkEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKqdrsvtceydvsnsmssltvsesglnandkmsetsenhnksdicdsssqsrdvsetcsksshdpdlcngrsdeakggssvpvsksglhingklrevsenhngssdgsksthasrdaseinrqssddfdicngpidkasvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQilkedpmypealigRGTARAFQRELEAAISDFTEAiqsnpsagEAWKRRGQARAALGESVEAIQDLSKalefepnsadilhergivnfkfkdFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDlssglgidpsnieCLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASkinsefcwfdidgdidplfkeywckrlhpknvcekvyrqpplrdslkkgklrrqdfsvTKQKTALLLVADSIGkkiqydcpgflsnRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKysnrssskngkrarrkdriniasqnrggagcstssssdtssygiteerssghpkmswqDVYTLAVKWRqisepcdpvvWVNKLSeefnsgfgshtpmilgqAKVVRYFPNYARTLDVAKTVMKDkkyvhnkaddiidlsedvvgedfwlATWCnstafegkqlegtRITLVKMgesgydfairtpctpsrwdeFDAEMTMAWEVDWEAilnsdphffldsvkswlypslktstswkeypdvtstfATTGSVVAALSSYDD
Flexible Loop (DISEMBL)
mlkrklldsryrlnkthkticeidelvrvDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETsenhnksdicdsssqsrDVSEtcsksshdpdlcngrsdeakggssvpvsksgLHINGKLrevsenhngssdgsksthasrdaseinrqssddfdicNGPIDKAsvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklsfkWDMLKetsneakrnkkfcvtrisksksisvdfrlsrgiaqvnegkyASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRlhpknvcekvyrqpplrdslkkgklrrqdfsvtkqktaLLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAewkysnrssskngkrarrkdriniasqnrggagcstssssdtssygiteerssghpkmswQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKtvmkdkkyvhnkaddiidlsEDVVGEDFWLATWCNStafegkqlegtRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVAALSSYDD
Low Complexity Region (SEG)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAkggssvpvsksgLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKlssdsaslndsntnsesyskssisdnkssdstesrsklsFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYhlrglllhglgqhKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDRINIASQNRGGAGCstssssdtssYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVAALSSYDD
Disordered region (IsUnstruct)
*********RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ**SVTCE************************************************************************************************************************************************************************************************************KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF*************************************LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQ***************DFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKY******************************************************SWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVA*******
Disordered Region (DISOPRED)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAE*******************RINIASQNRGGAGCST*******************PKMSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILN******LDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVAALSS***
Disordered Region (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNAN*************************************LCNGRS**********VSKSGLHINGKLREVS***********************RQSSDDFDICNGPIDKASVNER**************************************************KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS******************GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWK***************KDRINIASQ******************************MSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVAALSSYDD
Disordered Region (DISPRO)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNR******KRARRKDRINIASQN****************************KMSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVAALSSY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDRINIASQNRGGAGCSTSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSEDVVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVVAALSSYDD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1050	2.2.26 [Sep-21-2011]
Q8NBP0	860	Tetratricopeptide repeat	yes	no	0.567	0.693	0.260	1e-58
Q9M8Y0	977	Probable UDP-N-acetylgluc	no	no	0.195	0.209	0.255	1e-12
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.246	0.278	0.242	4e-12
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.207	0.233	0.248	3e-11
Q68FQ7	659	RNA polymerase II-associa	no	no	0.224	0.358	0.269	4e-10
Q96301	914	Probable UDP-N-acetylgluc	no	no	0.207	0.238	0.248	4e-10
Q58741	314	TPR repeat-containing pro	yes	no	0.235	0.786	0.244	1e-09
Q5ZKQ3	665	RNA polymerase II-associa	no	no	0.224	0.354	0.252	1e-09
Q04737	248	TPR repeat-containing pro	N/A	no	0.139	0.588	0.270	1e-09
Q54VG4	334	Small glutamine-rich tetr	no	no	0.110	0.347	0.316	2e-09

>sp|Q8NBP0|TTC13_HUMAN Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3

 Score =  229 bits (584), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 178/682 (26%), Positives = 313/682 (45%), Gaps = 86/682 (12%)

Query: 334 SDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN 393
           SD +   S+   S LS   + +   +      K+F       + + S +  L+     + 
Sbjct: 100 SDCEPKGSSPCDSLLSLNTEKILSQAKSIAEQKRFPFA----TDNDSTNEELAIAYVLIG 155

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQSNPSA 448
            G Y  AI  F  +L+E+P    A+ GRG A   +     +  E A+ + +  I   P  
Sbjct: 156 SGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEPDR 215

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
            E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+  A ED   
Sbjct: 216 PEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDFQQ 274

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            ++L+K    A  Y GL     G  K+A E+  +A++   +F++A+  L Q Y++L N E
Sbjct: 275 SLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFE 334

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A E  Q+ L +++   +   LRG++L+  G  ++A+K+    L ++P N  C Y++   
Sbjct: 335 AATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLS 394

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF-YQKEIALYTASKINSEFCWFDIDG 687
           + A+G++ E IK     +  +    +K   + L   Y +E + Y  + +++    ++ID 
Sbjct: 395 HVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDV 454

Query: 688 DIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTA-LLLVADSI 746
           D+   FK++W K L    + E    QP L+  +K   +  Q+F   K +   L+ VAD +
Sbjct: 455 DLPGSFKDHWAKNL--PFLIEDYEEQPGLQPHIK--DVLHQNFESYKPEVQELICVADRL 510

Query: 747 GKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRK 806
           G  +QY+ PGFL N+R HR  GLAA+E+ Q V + W         +N     NG     K
Sbjct: 511 GSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTW---------TNSKVRMNG-----K 556

Query: 807 DRINIASQNRGGAGCSTSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDP 866
            R+                                   M W+D++ +AVKWR+I++P  P
Sbjct: 557 TRL-----------------------------------MQWRDMFDIAVKWRRIADPDQP 581

Query: 867 VVWVNKL-SEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAK---------------- 909
           V+W++++ +   + GF +H  +I GQ   +RY   + + L   K                
Sbjct: 582 VLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLL 641

Query: 910 TVMKDKKYVHNKADDIIDLSEDV---VGEDFWLATWCNSTAFEGKQLEGTRITLVKMGES 966
            V +  + VH K +D++ + +       + F + T   S   +GK+ +G  IT+      
Sbjct: 642 EVREALEKVH-KVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVG 700

Query: 967 GYDFAIRTPCTPSRWDEFDAEM 988
              F++ T  T  R   + AE+
Sbjct: 701 NILFSVETQTTEERTQLYHAEI 722

Homo sapiens (taxid: 9606)

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 91/219 (41%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +L  A+  + EA++  P+  +A+   G    ALG   EAI     AL+  PNSA      
Sbjct: 238 DLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNI 297

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             + ++    + A+      +  D     AY  LG AL  IG   +A   + + + L  N
Sbjct: 298 ASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQPN 357

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             +A  +L   Y +      A    +  L +    S  ++   ++    G +  AI   +
Sbjct: 358 HPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYN 417

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L IDP   + L  R + Y  IG   EAI+DY  A++ 
Sbjct: 418 EVLRIDPLAADALVNRGNTYKEIGRVTEAIQDYMHAINF 456

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 17/276 (6%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F+EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   +++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+          Y +A C
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA--------YYKKALC 294

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664
           Y+    Y +A+ +   A    L      V   LAF+
Sbjct: 295 YN--WHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 328

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+ 
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 13/249 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +GKY  AI  + + +  DP  P     R +A    ++   A SD   AI  + 
Sbjct: 139 KGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSR 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVED 505
           S  +A+ RRG AR AL +  +A +D  K LE EP++ +  +E R I        N+  +D
Sbjct: 199 SYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENSHPKD 258

Query: 506 LSACVK-LDKENKS-----------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++A +K  + E K+           A   LG      G+Y++A E + + I  D      
Sbjct: 259 IAAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALL 318

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
             +    Y  +   E+A     Q + +D  +SKA+  RG     LG+  +A +D  + L 
Sbjct: 319 PANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLL 378

Query: 614 IDPSNIECL 622
           ++P N + +
Sbjct: 379 LEPGNKQAV 387

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 7/225 (3%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+A A+++++ +L++D    EA IG+G     Q +   A   F+EAI+ +P    A    
Sbjct: 58  KFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHC 117

Query: 456 GQARAALGESVEAIQDLSKAL----EFEPNS---ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL     ++P +   A +L + G       +    ++    
Sbjct: 118 GILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYE 177

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 178 ALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLE 237

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+ 
Sbjct: 238 MAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVA 282

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 114/254 (44%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G+   A+  FD+ LK  P Y  A   +G       +LE A   F +  +   S       
Sbjct: 59  GENDKALEYFDKALKLKPKYILANFLKGALLVSLGKLEEAKEVFLKLCRLEKSDLPVKYV 118

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
                  LGE   A++ + K L+  P SA    E+G + ++      ++E     +K++ 
Sbjct: 119 TAFILKKLGEYDYALKIIDKILKKYPKSAIAWAEKGEILYREGKLKKSLECFDNALKINP 178

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           ++  +  Y G  L  +G Y +A +   K  + +   + A  ++ Q    L    +ALE  
Sbjct: 179 KDCQSLLYKGEILFKLGRYGEALKCLKKVFERNNKDIRALMYIIQILIYLGRLNQALEYT 238

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           ++ L ++      Y  +G++L+ LG++ +AIK     L I+P+  +    +A     +G+
Sbjct: 239 KKALKLNPDDPLLYLYKGIILNKLGKYNEAIKYFDKVLEINPNIPDAWNGKAIALEKLGK 298

Query: 635 YREAIKDYDAALDL 648
             EAI+ Y+ ALD+
Sbjct: 299 INEAIECYNRALDI 312

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G +  AI  + + +  DP  P     R +A    ++   A SD   A+  + 
Sbjct: 139 KGNKYFKQGNFDEAIKCYTRGMHSDPFNPVLPTNRASAFYRMKKFSVAESDCNLALALDK 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-------KDF 499
           +  +A+ RRG AR AL     A +D  K LE + N+ +  +E   +           K+F
Sbjct: 199 NYTKAYARRGAARFALKNFQGAKEDYEKVLELDANNYEAKNELKKIEQALSSESSEQKEF 258

Query: 500 NAAV-----EDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
             AV     E+   C++ ++  + A T   LG      G+Y+ A E + + I  D     
Sbjct: 259 EEAVRSELTENERRCIEEEQLKQKAVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNAL 318

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
              +    Y  +   E+A     Q L +D  +SKA+  RG     LG+ K+A++D  + L
Sbjct: 319 LPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVL 378

Query: 613 GIDPSNIECL 622
            ++P N + +
Sbjct: 379 KLEPGNKQAI 388

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q04737|Y751_SYNY3 TPR repeat-containing protein slr0751 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0751 PE=4 SV=1

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           +RG+A    G    AI+ + + +  D  Y    I RG   + Q++   AI DFT+AI  +
Sbjct: 100 NRGLAWERLGNVDQAIADYGRSIALDRYYIPPYINRGNLYSQQQDHHTAIQDFTQAITYD 159

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+  +A+  R  +   LG+  +AI D ++ L   P+  + ++ RG+ +F+    +++ +D
Sbjct: 160 PNRYKAYYNRANSYFQLGQYAQAIADYNRVLVLRPDYINAIYNRGLAHFQAGQLDSSRQD 219

Query: 506 L--SACVKLDKENKSAYTYLGLALSSIG 531
           L  SA   L++ ++ +Y      +S +G
Sbjct: 220 LLFSAQAYLNRGDRRSYLEALDQMSELG 247

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425
           +KF  ++  + K+I+   + + G A++NEGK+  A+S +++ +  D         R    
Sbjct: 131 QKFMESKAGEVKAIAEKLK-NEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATY 189

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482
           +  +  E +I D  EAI+ NP+ G+A+ R G A  +LG+  EA++  +KA+E EPN+
Sbjct: 190 SALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNN 246

May act as a co-chaperone and regulate the ATPase activity of heat shock proteins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1050
255567975	1101	tetratricopeptide repeat protein, tpr, p	0.909	0.867	0.720	0.0
225438920	1068	PREDICTED: tetratricopeptide repeat prot	0.919	0.903	0.670	0.0
357482705	1033	Tetratricopeptide repeat protein [Medica	0.839	0.852	0.653	0.0
357482701	1062	Tetratricopeptide repeat protein [Medica	0.839	0.829	0.653	0.0
449520722	1046	PREDICTED: tetratricopeptide repeat prot	0.855	0.858	0.650	0.0
449448472	1046	PREDICTED: tetratricopeptide repeat prot	0.855	0.858	0.650	0.0
356496945	1047	PREDICTED: tetratricopeptide repeat prot	0.846	0.849	0.651	0.0
356565517	1042	PREDICTED: tetratricopeptide repeat prot	0.850	0.857	0.653	0.0
297798124	1043	hypothetical protein ARALYDRAFT_912592 [	0.891	0.897	0.589	0.0
186517170	1052	suppressor of RPS4-RLD 1 / tetratricopep	0.897	0.895	0.583	0.0

>gi|255567975|ref|XP_002524965.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis] gi|223535800|gb|EEF37462.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis]

 Score = 1385 bits (3584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/979 (72%), Positives = 806/979 (82%), Gaps = 24/979 (2%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLC+ R+WSKAIR+LDSLL+QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCASRDWSKAIRVLDSLLSQSCTIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQLDP LLQAYILKG AFS+LGRK++AL VW++GYEHAL QSADLKQ LELEELL  
Sbjct: 61  DKALQLDPMLLQAYILKGRAFSSLGRKDDALLVWQQGYEHALRQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQ+R++     V+ S + +  +E   + N K +E S+N ++ SDI +S  +S D SE C
Sbjct: 121 AKQERNIGLRDHVTES-TPMNTTEFATHTNGKSNEASKNRDQLSDISNSCRESGDGSEIC 179

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SK   + D  N   D+A G S + + +   H+NGK  +V  NH+   D SK  + SRD  
Sbjct: 180 SKFGGNFDAMNVIRDKAGGESPITIPECRPHMNGKSDDVCTNHDKLGDKSKLHNESRDTY 239

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           +I   S D+  I N    KA  + +  +  NGTH+  DK+S DS S N  +  S   SKS
Sbjct: 240 KICCNSGDNCAIQNYLSRKAEGDVKTDK--NGTHNFIDKIS-DSESCNVLSDTSVPSSKS 296

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S     S D+++ R KLS K D+  E  +E K++KKF VTRISK+KSI+VDFRLSRGIAQ
Sbjct: 297 STISISSGDTSDIRVKLSNKTDIPNEAGDETKKSKKFSVTRISKTKSITVDFRLSRGIAQ 356

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYASAISIFDQIL EDP YPEALIGRGTA AFQRELEAAI+DF++AIQSNP AGEA
Sbjct: 357 VNEGKYASAISIFDQILTEDPTYPEALIGRGTAHAFQRELEAAIADFSKAIQSNPLAGEA 416

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES+EAI DL+KALEFEPNSADILHERGIVNFKFKDF+AAV+DLSACVK
Sbjct: 417 WKRRGQARAALGESIEAIHDLTKALEFEPNSADILHERGIVNFKFKDFDAAVQDLSACVK 476

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           LDK+NKSAYTYLGLALSS GEYKKAEEAHLK+IQLDR+FLE W HLTQFYQDLAN  KA 
Sbjct: 477 LDKDNKSAYTYLGLALSSTGEYKKAEEAHLKSIQLDRSFLEGWAHLTQFYQDLANLTKAF 536

Query: 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
           EC++QVL ID RF+KAYHL GLLLHG+G+H+KAIK+LS GL I+ SNIECLYLRASCYHA
Sbjct: 537 ECIKQVLQIDARFAKAYHLHGLLLHGMGEHRKAIKELSLGLSIENSNIECLYLRASCYHA 596

Query: 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691
           IGEY EA+KDYDA LD+ELDSMEKFVLQCLAFYQKE+ALYTASKINSEFCWFDIDGDIDP
Sbjct: 597 IGEYGEAVKDYDATLDMELDSMEKFVLQCLAFYQKELALYTASKINSEFCWFDIDGDIDP 656

Query: 692 LFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQ 751
           LFKEYWCKRLHPKNVCEKVYRQPPLRDSLK+GKLR+QDF +TKQKTALL+ ADSIGKKIQ
Sbjct: 657 LFKEYWCKRLHPKNVCEKVYRQPPLRDSLKRGKLRKQDFVITKQKTALLMAADSIGKKIQ 716

Query: 752 YDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDRINI 811
           YDCPGFL NRRQHRMAGLAAIEIAQKVSK WRSLQAEWK+SN+S SK GK+ RR  RIN+
Sbjct: 717 YDCPGFLPNRRQHRMAGLAAIEIAQKVSKAWRSLQAEWKHSNKSMSKYGKKTRR--RINM 774

Query: 812 ASQNRGGAGCSTSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVVWVN 871
            SQNRGGAGCS++SS  ++SYGI+EERSSG   +SWQDVY+LAVKWRQISEPCDPVVWVN
Sbjct: 775 PSQNRGGAGCSSNSSETSTSYGISEERSSGRHMISWQDVYSLAVKWRQISEPCDPVVWVN 834

Query: 872 KLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLSED 931
           KLSEEFN+GFGS TP+ILGQAKVVRY+ NY RTLD AKT+MKDK YVH+KAD++ID+S+D
Sbjct: 835 KLSEEFNTGFGSQTPLILGQAKVVRYYMNYERTLDAAKTIMKDKLYVHSKADEVIDISKD 894

Query: 932 -----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAIRT 974
                            V+GEDFWLATWCNST  EGK+LEGTRITL+KMGE G+DFAIRT
Sbjct: 895 EKLRDIMDAKTCSELYKVIGEDFWLATWCNSTVIEGKRLEGTRITLMKMGEHGFDFAIRT 954

Query: 975 PCTPSRWDEFDAEMTMAWE 993
           PCTP RWDEFDAEM MAWE
Sbjct: 955 PCTPPRWDEFDAEMAMAWE 973

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438920|ref|XP_002279290.1| PREDICTED: tetratricopeptide repeat protein 13-like [Vitis vinifera]

 Score = 1330 bits (3442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1035 (67%), Positives = 806/1035 (77%), Gaps = 70/1035 (6%)

Query: 33   MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
            M SAI+ R ELAKLCS R+WSKAIR+LDSLLAQS  IQDICNRAFCYS+LELHKHVIRDC
Sbjct: 1    MESAISERQELAKLCSCRDWSKAIRVLDSLLAQSCVIQDICNRAFCYSKLELHKHVIRDC 60

Query: 93   DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
            DKALQL+PTLLQAYILKG A SALG+KE+AL VWE+GY HA+ QSADLKQFLELEELL  
Sbjct: 61   DKALQLEPTLLQAYILKGHALSALGKKEDALLVWEQGYGHAVRQSADLKQFLELEELL-- 118

Query: 153  AKQDRSVTCE-YDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETC 211
             KQ+R +TCE + + +  SS++VSES L+ N+K + T +N +K +         D SE C
Sbjct: 119  -KQNRRITCENHAMESPESSISVSESALHVNEKPNSTHKNDSKLN---------DESELC 168

Query: 212  SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
            S+SS   +                       I+ K     +N +  +D S+    S D S
Sbjct: 169  SESSDTSE-----------------------IHCKPNSTHKNDSKLNDESELCSESSDTS 205

Query: 272  EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
            EI+ ++ D  D  +   D  + NE+   ++NGT+D+  K S +S   ++ N  SE  SKS
Sbjct: 206  EIHCKAFDTSDGHDELRDTVNGNEKLNSESNGTYDIFVKSSDESELCSELNDTSEQSSKS 265

Query: 332  SIS-DNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390
            S+   +KSSD +E R K S K+D+  E  +EA RNKKFCVTRISK+KSISVDFRLSRGIA
Sbjct: 266  SVVIHSKSSDISEVRRKSSNKYDIRSELGDEANRNKKFCVTRISKTKSISVDFRLSRGIA 325

Query: 391  QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
            QVNEG Y++AISIFDQILKEDP YPEAL+GRGTA AFQREL +AI+DFT+AI+SNPSA E
Sbjct: 326  QVNEGNYSNAISIFDQILKEDPTYPEALVGRGTAYAFQRELSSAIADFTKAIESNPSACE 385

Query: 451  AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510
            AWKRRGQARAALGES EAI+DL+KALEFEPNS DILHERGIVNFKFKDFNAAVEDLSACV
Sbjct: 386  AWKRRGQARAALGESSEAIEDLTKALEFEPNSTDILHERGIVNFKFKDFNAAVEDLSACV 445

Query: 511  KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
            +LDKENKSAYTYLGLALSSIGEYK+AEEAH+K+IQLD+NFLE W HLTQFYQDLAN  KA
Sbjct: 446  QLDKENKSAYTYLGLALSSIGEYKRAEEAHMKSIQLDQNFLEGWAHLTQFYQDLANPTKA 505

Query: 571  LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630
            LEC+++VL ID+ F+KAYHLRGLL HG+G+HKKAI DLS GLGI+ SNIECLYLRASCYH
Sbjct: 506  LECIERVLQIDEGFAKAYHLRGLLRHGMGEHKKAITDLSIGLGIENSNIECLYLRASCYH 565

Query: 631  AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID 690
            AIGEY EAIKDYD AL LELDSMEKFVLQCLAFYQKE+ALY ASK+N EFCWFDID DI+
Sbjct: 566  AIGEYGEAIKDYDKALTLELDSMEKFVLQCLAFYQKELALYAASKMNVEFCWFDIDRDIN 625

Query: 691  PLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKKI 750
            PLFKEYWCKRLHPK+V E V+RQP    SLKK K R+QDF+VTKQK ALL  ADSIGKKI
Sbjct: 626  PLFKEYWCKRLHPKHVSENVFRQP----SLKKNKHRKQDFAVTKQKAALLHAADSIGKKI 681

Query: 751  QYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDRIN 810
            QY+CPGFL NRRQHRMAGLAAIEIAQKVSK WRSLQ E    NR++SK+GK+ARRK++IN
Sbjct: 682  QYNCPGFLPNRRQHRMAGLAAIEIAQKVSKAWRSLQVE---RNRNTSKHGKKARRKEKIN 738

Query: 811  IASQNRGGAGC-STSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVVW 869
              S NRGGAGC ++SSS  ++SY ITE+RSSG P MSW DVY+LAVKWRQISEPCDPVVW
Sbjct: 739  TPSLNRGGAGCSTSSSSETSTSYSITEDRSSGRPMMSWHDVYSLAVKWRQISEPCDPVVW 798

Query: 870  VNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLS 929
            VNKLSEEFNSGFGSHTP+ILGQAKVVRYFPNY RTLDVAKTVMK+K+YVHNKADDI+ LS
Sbjct: 799  VNKLSEEFNSGFGSHTPLILGQAKVVRYFPNYQRTLDVAKTVMKEKRYVHNKADDIMYLS 858

Query: 930  ED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAI 972
            ED                 +VGEDFWLATWCNSTA EGK+LEGTRITL+KMGE G+DFAI
Sbjct: 859  EDGKLQEIMHAESCSDLYKIVGEDFWLATWCNSTAIEGKRLEGTRITLLKMGEHGFDFAI 918

Query: 973  RTPCTPSRWDEFDAEMTMAWEVDWEAILNSDPHF-----FLDSVKSWLYPSLKTSTSWKE 1027
            RTPCTPSRWD+FD EM +AW+    A      +       L++V+  +   L+ +  W  
Sbjct: 919  RTPCTPSRWDDFDTEMAVAWDALCNAYCGEKTYGSTNFDMLENVRDAI---LRMTYYWYN 975

Query: 1028 YPDVTSTFATTGSVV 1042
            +  ++   A  G VV
Sbjct: 976  FMPLSRGTAAVGFVV 990

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482705|ref|XP_003611639.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355512974|gb|AES94597.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score = 1278 bits (3306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/986 (65%), Positives = 758/986 (76%), Gaps = 105/986 (10%)

Query: 32  VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRD 91
           + A A + R ELAKLCS ++WSKAIRILDSL++QS  IQDICNRAFCYSQLELHKHVI+D
Sbjct: 1   MAAPATSQRTELAKLCSTKDWSKAIRILDSLISQSTAIQDICNRAFCYSQLELHKHVIKD 60

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151
           CD+A+QL+P LLQAYILKG AFSALGRK +AL VWE+GYE A H SADLKQ +ELEELL 
Sbjct: 61  CDRAIQLNPLLLQAYILKGHAFSALGRKADALLVWEQGYEQAQHHSADLKQLIELEELLV 120

Query: 152 AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS----SSQSRDV 207
            AKQ        + SN  + L++ ++        S++S N N ++ C+S    S  + D 
Sbjct: 121 KAKQ------AINSSNETNGLSIPQA-------KSDSSSNRNLTETCESQAKLSGNTSDK 167

Query: 208 SETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS 267
           SE   KS+   D  N  + E  GG S   SK    +NG    +      SSD S+S    
Sbjct: 168 SEVLLKSADKFDARNELNSE--GGES---SKCDGQVNGSPDIIDNLRYDSSDTSES---- 218

Query: 268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES 327
                           C+                        K+ ++S   +DSN  +E 
Sbjct: 219 ----------------CD------------------------KVLTNSGESSDSNDAAEI 238

Query: 328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSR 387
             K S              K +F      E S+EA+++KKF V R+SK+KSISVDFRLSR
Sbjct: 239 LRKPSF-------------KFTFP----SEKSSEARKSKKFSVARVSKTKSISVDFRLSR 281

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           GIA+VNEGKYA AISIFDQILKED  YPEALIGRGTA AF+REL +AI+DFT+AIQ NP+
Sbjct: 282 GIAEVNEGKYAHAISIFDQILKEDSAYPEALIGRGTAYAFKRELHSAIADFTKAIQYNPA 341

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           AGEAWKRRGQARAALGE VEAI+DL+KALEFEPN+ADILHERGIVNFKFK+FN AVEDLS
Sbjct: 342 AGEAWKRRGQARAALGEFVEAIEDLTKALEFEPNTADILHERGIVNFKFKEFNTAVEDLS 401

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
           ACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++QLD++FLEAWGHLTQFYQDL+  
Sbjct: 402 ACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKSFLEAWGHLTQFYQDLSKP 461

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            KALECL QVL ID RF++AYHLRG+L H +G+H+KAIKDL++GL ID +NIE LYLRA+
Sbjct: 462 TKALECLTQVLQIDGRFARAYHLRGVLFHAMGEHRKAIKDLTTGLSIDGANIESLYLRAA 521

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687
           CYHA+G+Y+EA+KDYDAALDLELDSM+KFVLQCLAFYQKEI LYTASK NSEFCWFDIDG
Sbjct: 522 CYHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLAFYQKEITLYTASKFNSEFCWFDIDG 581

Query: 688 DIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIG 747
           DIDPLFKEYWCKRLHPKNVCEKV+RQPPLR+SL+KGKLR+Q+ ++TKQK+AL+  ADSIG
Sbjct: 582 DIDPLFKEYWCKRLHPKNVCEKVFRQPPLRESLRKGKLRKQELTLTKQKSALIQAADSIG 641

Query: 748 KKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNR--SSSKNGKRARR 805
           +KIQYDCPGFL NRRQHRM+G AAIE+AQKVSKIWR LQAEWK SN+  S+SK+GKR RR
Sbjct: 642 QKIQYDCPGFLPNRRQHRMSGFAAIEVAQKVSKIWRILQAEWKSSNKPNSNSKHGKRVRR 701

Query: 806 KDRINIASQNRGGAGCSTSSSSDTSSYGITEER-SSGHPKMSWQDVYTLAVKWRQISEPC 864
           ++RIN+ SQNRGGAGCSTSS  +TSS GI +++ SS H  MSW+D+Y++AV+WRQISEPC
Sbjct: 702 RERINLPSQNRGGAGCSTSSVFETSSSGIVDDKLSSRH--MSWKDIYSIAVRWRQISEPC 759

Query: 865 DPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADD 924
           DPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNY RTLD+AKTVMK++ YVH K D 
Sbjct: 760 DPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYERTLDIAKTVMKERSYVHGKTDQ 819

Query: 925 IIDLSED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESG 967
           II LS D                 VVGEDFW +TWCNSTAFEGKQLEGTR+TLVKMG+ G
Sbjct: 820 IIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWSSTWCNSTAFEGKQLEGTRVTLVKMGQHG 879

Query: 968 YDFAIRTPCTPSRWDEFDAEMTMAWE 993
           +DFAIRTPCTP+RW+++DAEM MAWE
Sbjct: 880 FDFAIRTPCTPARWEDYDAEMAMAWE 905

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482701|ref|XP_003611637.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355512972|gb|AES94595.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score = 1277 bits (3305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/986 (65%), Positives = 758/986 (76%), Gaps = 105/986 (10%)

Query: 32  VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRD 91
           + A A + R ELAKLCS ++WSKAIRILDSL++QS  IQDICNRAFCYSQLELHKHVI+D
Sbjct: 1   MAAPATSQRTELAKLCSTKDWSKAIRILDSLISQSTAIQDICNRAFCYSQLELHKHVIKD 60

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT 151
           CD+A+QL+P LLQAYILKG AFSALGRK +AL VWE+GYE A H SADLKQ +ELEELL 
Sbjct: 61  CDRAIQLNPLLLQAYILKGHAFSALGRKADALLVWEQGYEQAQHHSADLKQLIELEELLV 120

Query: 152 AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS----SSQSRDV 207
            AKQ        + SN  + L++ ++        S++S N N ++ C+S    S  + D 
Sbjct: 121 KAKQ------AINSSNETNGLSIPQA-------KSDSSSNRNLTETCESQAKLSGNTSDK 167

Query: 208 SETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS 267
           SE   KS+   D  N  + E  GG S   SK    +NG    +      SSD S+S    
Sbjct: 168 SEVLLKSADKFDARNELNSE--GGES---SKCDGQVNGSPDIIDNLRYDSSDTSES---- 218

Query: 268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSES 327
                           C+                        K+ ++S   +DSN  +E 
Sbjct: 219 ----------------CD------------------------KVLTNSGESSDSNDAAEI 238

Query: 328 YSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSR 387
             K S              K +F      E S+EA+++KKF V R+SK+KSISVDFRLSR
Sbjct: 239 LRKPSF-------------KFTFP----SEKSSEARKSKKFSVARVSKTKSISVDFRLSR 281

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           GIA+VNEGKYA AISIFDQILKED  YPEALIGRGTA AF+REL +AI+DFT+AIQ NP+
Sbjct: 282 GIAEVNEGKYAHAISIFDQILKEDSAYPEALIGRGTAYAFKRELHSAIADFTKAIQYNPA 341

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           AGEAWKRRGQARAALGE VEAI+DL+KALEFEPN+ADILHERGIVNFKFK+FN AVEDLS
Sbjct: 342 AGEAWKRRGQARAALGEFVEAIEDLTKALEFEPNTADILHERGIVNFKFKEFNTAVEDLS 401

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
           ACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++QLD++FLEAWGHLTQFYQDL+  
Sbjct: 402 ACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKSFLEAWGHLTQFYQDLSKP 461

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            KALECL QVL ID RF++AYHLRG+L H +G+H+KAIKDL++GL ID +NIE LYLRA+
Sbjct: 462 TKALECLTQVLQIDGRFARAYHLRGVLFHAMGEHRKAIKDLTTGLSIDGANIESLYLRAA 521

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG 687
           CYHA+G+Y+EA+KDYDAALDLELDSM+KFVLQCLAFYQKEI LYTASK NSEFCWFDIDG
Sbjct: 522 CYHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLAFYQKEITLYTASKFNSEFCWFDIDG 581

Query: 688 DIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIG 747
           DIDPLFKEYWCKRLHPKNVCEKV+RQPPLR+SL+KGKLR+Q+ ++TKQK+AL+  ADSIG
Sbjct: 582 DIDPLFKEYWCKRLHPKNVCEKVFRQPPLRESLRKGKLRKQELTLTKQKSALIQAADSIG 641

Query: 748 KKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNR--SSSKNGKRARR 805
           +KIQYDCPGFL NRRQHRM+G AAIE+AQKVSKIWR LQAEWK SN+  S+SK+GKR RR
Sbjct: 642 QKIQYDCPGFLPNRRQHRMSGFAAIEVAQKVSKIWRILQAEWKSSNKPNSNSKHGKRVRR 701

Query: 806 KDRINIASQNRGGAGCSTSSSSDTSSYGITEER-SSGHPKMSWQDVYTLAVKWRQISEPC 864
           ++RIN+ SQNRGGAGCSTSS  +TSS GI +++ SS H  MSW+D+Y++AV+WRQISEPC
Sbjct: 702 RERINLPSQNRGGAGCSTSSVFETSSSGIVDDKLSSRH--MSWKDIYSIAVRWRQISEPC 759

Query: 865 DPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADD 924
           DPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNY RTLD+AKTVMK++ YVH K D 
Sbjct: 760 DPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYERTLDIAKTVMKERSYVHGKTDQ 819

Query: 925 IIDLSED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESG 967
           II LS D                 VVGEDFW +TWCNSTAFEGKQLEGTR+TLVKMG+ G
Sbjct: 820 IIHLSNDGKLEEIMHAKSCSDLYKVVGEDFWSSTWCNSTAFEGKQLEGTRVTLVKMGQHG 879

Query: 968 YDFAIRTPCTPSRWDEFDAEMTMAWE 993
           +DFAIRTPCTP+RW+++DAEM MAWE
Sbjct: 880 FDFAIRTPCTPARWEDYDAEMAMAWE 905

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520722|ref|XP_004167382.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score = 1266 bits (3277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/981 (65%), Positives = 757/981 (77%), Gaps = 83/981 (8%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESRFSAVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689
           HAIGEY  A+KDYD  LDL+LDSMEKFVLQCLAFYQKEIALYTASK +S+FCWFDIDGDI
Sbjct: 538 HAIGEYGLAVKDYDVTLDLDLDSMEKFVLQCLAFYQKEIALYTASKSSSDFCWFDIDGDI 597

Query: 690 DPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKK 749
           DPLFKEYWCKRLHPK+VCEKV+RQPP+R+SLKKG+LR+Q+  +TKQK +LLL AD+ G+K
Sbjct: 598 DPLFKEYWCKRLHPKDVCEKVFRQPPIRESLKKGRLRKQEHGMTKQKISLLLAADTTGRK 657

Query: 750 IQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDRI 809
           IQYDCPGFLSNRRQHRMAGLA I++AQKVS+ WR++QAEWK SN+S++K+GKRARR++R 
Sbjct: 658 IQYDCPGFLSNRRQHRMAGLAVIDVAQKVSRTWRAMQAEWKCSNKSNTKHGKRARRRERP 717

Query: 810 NIASQNRGGAGCSTSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVVW 869
           +IASQNRGGAGCSTS  S+ SS    E+R SGH  +SWQDV++ AVKWRQISEPCDPVVW
Sbjct: 718 SIASQNRGGAGCSTSGFSEPSSSSHLEDRLSGHNFISWQDVFSFAVKWRQISEPCDPVVW 777

Query: 870 VNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLS 929
           +NKLSEEFNSGFGSHTPMILGQAKVVRY+PN+ RTL+VAK V+K K +V+NK+D ++DL 
Sbjct: 778 INKLSEEFNSGFGSHTPMILGQAKVVRYYPNFERTLEVAKAVIKHKPFVYNKSDLMVDLR 837

Query: 930 ED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAI 972
           ED                 VVGEDFWLATWCNSTAFEGKQLEGTRITLVK GE G+DFAI
Sbjct: 838 EDGKLQNIMQAKSCSDLYKVVGEDFWLATWCNSTAFEGKQLEGTRITLVKTGERGFDFAI 897

Query: 973 RTPCTPSRWDEFDAEMTMAWE 993
           RTPCTPSRW+EFDAEM MAWE
Sbjct: 898 RTPCTPSRWEEFDAEMAMAWE 918

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448472|ref|XP_004141990.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score = 1264 bits (3272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/981 (65%), Positives = 757/981 (77%), Gaps = 83/981 (8%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESGFSTVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI 689
           HAIGEY  A+KDYDA LDL+LDSMEKFVLQCLAFYQKEIALYTASK +S+FCWFDIDGDI
Sbjct: 538 HAIGEYGLAVKDYDATLDLDLDSMEKFVLQCLAFYQKEIALYTASKSSSDFCWFDIDGDI 597

Query: 690 DPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGKK 749
           DPLFKEYWCKRLHPK+VCEKV+RQPP+R+SLKKG+LR+Q+  +TKQK +LLL AD+ G+K
Sbjct: 598 DPLFKEYWCKRLHPKDVCEKVFRQPPIRESLKKGRLRKQEHGMTKQKISLLLAADTTGRK 657

Query: 750 IQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDRI 809
           IQYDCPGFLSNRRQHRMAGLA I++AQKVS+ WR++ AEWK SN+S++K+GKRARR++R 
Sbjct: 658 IQYDCPGFLSNRRQHRMAGLAVIDVAQKVSRTWRAMLAEWKCSNKSNTKHGKRARRRERP 717

Query: 810 NIASQNRGGAGCSTSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVVW 869
           +IASQNRGGAGCSTS  S+ SS    E+R SGH  +SWQDV++ AVKWRQISEPCDPVVW
Sbjct: 718 SIASQNRGGAGCSTSGFSEPSSSSHLEDRLSGHNFISWQDVFSFAVKWRQISEPCDPVVW 777

Query: 870 VNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDLS 929
           +NKLSEEFNSGFGSHTPMILGQAKVVRY+PN+ RTL+VAK V+K K +V+NK+D ++DL 
Sbjct: 778 INKLSEEFNSGFGSHTPMILGQAKVVRYYPNFERTLEVAKAVIKHKPFVYNKSDLMVDLR 837

Query: 930 ED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFAI 972
           ED                 VVGEDFWLATWCNSTAFEGKQLEGTRITLVK GE G+DFAI
Sbjct: 838 EDGKLQNIMQAKSCSDLYKVVGEDFWLATWCNSTAFEGKQLEGTRITLVKTGERGFDFAI 897

Query: 973 RTPCTPSRWDEFDAEMTMAWE 993
           RTPCTPSRW+EFDAEM MAWE
Sbjct: 898 RTPCTPSRWEEFDAEMAMAWE 918

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496945|ref|XP_003517325.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score = 1232 bits (3188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/991 (65%), Positives = 752/991 (75%), Gaps = 102/991 (10%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA   + R  LA+LCS ++WSKAIR+LDSL++QS  IQDICNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPTTSQRATLARLCSSKDWSKAIRVLDSLVSQSGAIQDICNRAFCYSRLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           +KALQLDP+ LQAYILKG A SALGRK +AL VWE+GYEHA HQSADLK  LELEELLT 
Sbjct: 61  NKALQLDPSRLQAYILKGHALSALGRKTDALLVWEQGYEHAQHQSADLKLLLELEELLTT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK----SDICDSSSQSRDVS 208
            KQ  S   E     + S ++ SES   ++  ++E  EN ++     ++CD++S   D S
Sbjct: 121 TKQGNSALYE----TNGSPVSQSESDSPSDGNLTEICENQDRLSVQDELCDNAS---DKS 173

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHING------KLREVSENHNGSSDGSK 262
               KS+ + DL N  + E +       +KS   +NG      KL   SE+ N SSD S+
Sbjct: 174 LILLKSADNFDLRNELNIEDRES-----NKSDSQVNGSPDVIDKLSYNSESCNDSSDTSE 228

Query: 263 STHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSN 322
           S    +  +     SSD  D+                      ++  KLSS         
Sbjct: 229 SCDKDKVFTNSGESSSDSLDVA---------------------EILRKLSS--------- 258

Query: 323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD 382
                                       K++   E   EA++N KFCV RISK+KSISVD
Sbjct: 259 ----------------------------KFNFPHEKIGEARKN-KFCVARISKTKSISVD 289

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
           FRLSRGI +VNEGKYA AISIFDQILKEDP YPEALIGRGTA AF+REL+AAI+DF++AI
Sbjct: 290 FRLSRGIGEVNEGKYAHAISIFDQILKEDPAYPEALIGRGTAYAFKRELDAAIADFSKAI 349

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + NPSAGEAWKRRGQARAALGE VEAI+DL+ ALEFE NSADILHERGIVNFKFK+F+AA
Sbjct: 350 EFNPSAGEAWKRRGQARAALGEFVEAIEDLTMALEFESNSADILHERGIVNFKFKEFDAA 409

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           VEDLSACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++Q+DRNFLEAW HLTQFYQ
Sbjct: 410 VEDLSACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQIDRNFLEAWAHLTQFYQ 469

Query: 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622
           DL+   KA ECL Q+L ID RF++AYHLRGLL H +G+H+KAI DL+  L +D +N+ECL
Sbjct: 470 DLSKPTKAQECLNQMLQIDGRFARAYHLRGLLFHAMGEHRKAISDLTMSLNVDGANVECL 529

Query: 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCW 682
           YLR SCYHA+G Y+EA+KDYDAALDLELDSM+KFVLQCLAFYQKEIALYTASK NSEFCW
Sbjct: 530 YLRGSCYHAVGRYKEAVKDYDAALDLELDSMDKFVLQCLAFYQKEIALYTASKFNSEFCW 589

Query: 683 FDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLV 742
           FDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPP R+SL+KGKLR+Q+  +TKQKTAL+  
Sbjct: 590 FDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPFRESLRKGKLRKQELVLTKQKTALIQA 649

Query: 743 ADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEW--KYSNRSSSKNG 800
           ADSIGK+IQYDCPGFL N RQHRMAG AAIEIAQKVSK WRS QAEW     N S+SKNG
Sbjct: 650 ADSIGKRIQYDCPGFLPNGRQHRMAGFAAIEIAQKVSKAWRSFQAEWKHSNKNNSNSKNG 709

Query: 801 KRARRKDRINIASQNRGGAGCSTSSSSDTS-SYGITEERSSGHPKMSWQDVYTLAVKWRQ 859
           KRARR++RIN+ SQNRGGAGCSTSS+S+ S SYGI  +RSS    MSWQDVY++AV+WRQ
Sbjct: 710 KRARRRERINMLSQNRGGAGCSTSSASEISPSYGIAVDRSSSR-SMSWQDVYSIAVRWRQ 768

Query: 860 ISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVH 919
           ISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNY RTLD+AKTV+K+K YV+
Sbjct: 769 ISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYERTLDIAKTVIKEKSYVY 828

Query: 920 NKADDIIDLSED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVK 962
           +K D II LS+D                 VVGEDFW +TWCNSTAFEGKQLEGTRITLVK
Sbjct: 829 SKTDQIIRLSKDGKLEEVIHANSVSDLYNVVGEDFWSSTWCNSTAFEGKQLEGTRITLVK 888

Query: 963 MGESGYDFAIRTPCTPSRWDEFDAEMTMAWE 993
           MGE+G+DFAIRTPCTP+RW+++DAEM MAWE
Sbjct: 889 MGENGFDFAIRTPCTPARWEDYDAEMAMAWE 919

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565517|ref|XP_003550986.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score = 1229 bits (3179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 642/983 (65%), Positives = 755/983 (76%), Gaps = 90/983 (9%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA A + R+ELA+LC+ ++WSKAIRILDSL++ S  IQD+CNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPATSERVELARLCASKDWSKAIRILDSLVSHSNAIQDLCNRAFCYSKLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDPTLLQAYILKG A S LGRKE AL VWE+GYEHALHQSADLKQ LELEEL+  
Sbjct: 61  DRALQLDPTLLQAYILKGSALSVLGRKENALLVWEQGYEHALHQSADLKQLLELEELIAT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN----KSDICDSSSQSRDVS 208
           AKQ  +  CE   S +  SL  ++S   +N   SET +  +    ++++C  ++   D S
Sbjct: 121 AKQGNNTLCE---SETHRSLPQTKSVSLSNGSSSETCKIQDTLGTRAELCGDATG--DKS 175

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASR 268
           ETC KS+ + +L +   DE                    RE S   +G  +GS       
Sbjct: 176 ETCLKSADNSNLKHESHDE-------------------YRE-SNKSDGQVNGSPDV---L 212

Query: 269 DASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY 328
           D    N +S +D    +   DK S N                 S DSA++     N    
Sbjct: 213 DTLSYNSESCNDSSDASESSDKVSTN-----------------SGDSANVPKIFRN--PI 253

Query: 329 SKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRG 388
           SK   SD +  +                     A++NKKFCV RIS + SISVDFRLSRG
Sbjct: 254 SKFIFSDERKGE---------------------ARKNKKFCVARISNTNSISVDFRLSRG 292

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           IA+VNEGKYA AISIFDQILK+DP YPEALIGRGTA AFQREL+AAI+DFT+AIQ NP A
Sbjct: 293 IAEVNEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLA 352

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
           GEAWKRRGQARAALGE VEAI+DL+KALEFEP++ADILHERGIVNFKFK+F+AAVEDLSA
Sbjct: 353 GEAWKRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSA 412

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
           CVKLDK+N SAYTYLGLALSSIGEYK+AEEAHLK++QLD+NFLEAW HLTQFYQDLA   
Sbjct: 413 CVKLDKDNTSAYTYLGLALSSIGEYKEAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPT 472

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
           KA EC+ ++L+ID RF++AYHLRGLL H +G+H+KAIKDL+ GL ID SNIECLYLRASC
Sbjct: 473 KAQECINRMLHIDGRFARAYHLRGLLFHAMGEHRKAIKDLTMGLSIDGSNIECLYLRASC 532

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD 688
           YHA+G+Y+EA+KDYDAALDLELDSM+KFVLQCL FYQKEIALYTASK N +FCWFDIDGD
Sbjct: 533 YHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLVFYQKEIALYTASKFNGDFCWFDIDGD 592

Query: 689 IDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIGK 748
           ID LFKEYWCK+LHPKNVCEKV+RQPPLR+SL+KGKL++Q+F++TKQK ALL  +DSIG 
Sbjct: 593 IDALFKEYWCKKLHPKNVCEKVFRQPPLRESLRKGKLKKQEFTITKQKAALLQASDSIGM 652

Query: 749 KIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKDR 808
           KIQYDCPGFL NRRQHRMAGLAAIEIAQKVSK WRSL AEWKYSN+ +SKNG+RARR++R
Sbjct: 653 KIQYDCPGFLPNRRQHRMAGLAAIEIAQKVSKAWRSLHAEWKYSNKGNSKNGRRARRRER 712

Query: 809 INIASQNRGGAGCSTSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEPCDPVV 868
           IN+ SQNRGGAGCSTSS+S TSS G  ++R S     SW +VY+LAV+WRQISEPCDPVV
Sbjct: 713 INMPSQNRGGAGCSTSSTSVTSSNGTVDDRLSSR-TFSWHNVYSLAVRWRQISEPCDPVV 771

Query: 869 WVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKADDIIDL 928
           WVNKLS+EFN+GFGSHTPMILGQA+VVRYFPNY RTL++AKTVMK++ +V +K D II L
Sbjct: 772 WVNKLSDEFNAGFGSHTPMILGQARVVRYFPNYERTLEIAKTVMKERSFVRSKTDKIIHL 831

Query: 929 SED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLVKMGESGYDFA 971
           SED                 V+GEDFWLATWCNSTAFEGKQLEGTRI LVKMGE G+DFA
Sbjct: 832 SEDGKLEEIMHAKSCSDLYKVIGEDFWLATWCNSTAFEGKQLEGTRINLVKMGEHGFDFA 891

Query: 972 IRTPCTPSRWDEFDAEMTMAWEV 994
           I+TPCTP+RW++FD EMT+AWE 
Sbjct: 892 IKTPCTPARWEDFDEEMTVAWET 914

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798124|ref|XP_002866946.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata] gi|297312782|gb|EFH43205.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata]

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1039 (58%), Positives = 748/1039 (71%), Gaps = 103/1039 (9%)

Query: 33   MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
            MA+A + R+ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DC
Sbjct: 1    MATATSERVELAKHCSSRNWSKAIRVLDSLLAKQSSILDICNRAFCYNQLELHKHVIKDC 60

Query: 93   DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
            DKAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY++AL Q+AD+KQ LELEELLT 
Sbjct: 61   DKALLLEPCAIQAFILKGRALLALGRKQEAVLVLEQGYKNALQQTADVKQLLELEELLTD 120

Query: 153  AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            A++      E D + S      S S    +D+ ++  +NH               S  CS
Sbjct: 121  ARR------EIDATESRQETPASHS--EKSDEKTDKLDNHE--------------SGACS 158

Query: 213  KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
                     NG S                H +   RE+ E        SK    S+D S+
Sbjct: 159  ---------NGNS----------------HDHEASRELGEK-------SKIISFSKDTSK 186

Query: 273  INRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNT 323
             ++QS    D+CNG   K   N + G Q NG++         D+HD L+  S  L D + 
Sbjct: 187  ASKQSDGSSDLCNGSAYKEKENGKCGSQINGSYESCKPCNGSDLHDNLAESSDRLGDLSI 246

Query: 324  NSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383
            N    +K  I  +K S   E+R              +E ++NKK+ + RIS + SISVDF
Sbjct: 247  NG---NKLIIKSSKMSHKAEARC-------------DETRKNKKYTIARISGTHSISVDF 290

Query: 384  RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            RLSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQ
Sbjct: 291  RLSRGIAQVNEGNYMKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQ 350

Query: 444  SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
            SNP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV
Sbjct: 351  SNPAATEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAV 410

Query: 504  EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
            +DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+
Sbjct: 411  KDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQE 470

Query: 564  LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
            LA+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLY
Sbjct: 471  LADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLY 529

Query: 624  LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF 683
            LR SCYHAIGEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQKE+ALYTASK++SEF  F
Sbjct: 530  LRGSCYHAIGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQKELALYTASKVSSEFLCF 589

Query: 684  DIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVA 743
            DIDGDIDP+FKEYWCKRLHPKNVCEKVYRQPPLR+SLKKGKL++QD ++TKQK  +L  A
Sbjct: 590  DIDGDIDPMFKEYWCKRLHPKNVCEKVYRQPPLRESLKKGKLKKQDLAITKQKANVLRFA 649

Query: 744  DSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRA 803
            D IGK+IQYDCPGFL N+RQHRMAGLA IEIAQKVSK WR    EW+ S + ++K+GK+ 
Sbjct: 650  DLIGKRIQYDCPGFLPNKRQHRMAGLAVIEIAQKVSKAWR---IEWRNSTKGTTKSGKKN 706

Query: 804  RRKDRINIASQNRGGAGCSTSSSSDTSS-YGITEERSSGHPKMSWQDVYTLAVKWRQISE 862
            RR++R NI SQNRGGAGCS++S S+TS+ Y   E+RSSG   +SWQDVY+ AVKWRQISE
Sbjct: 707  RRRERTNILSQNRGGAGCSSNSFSETSTGYASLEDRSSGRSMLSWQDVYSPAVKWRQISE 766

Query: 863  PCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKA 922
            PCDPVVWVNKLSEEFNSGFGSHTPM+LGQAKVVRYFPNY RTL +AK+++KDK  V +K 
Sbjct: 767  PCDPVVWVNKLSEEFNSGFGSHTPMVLGQAKVVRYFPNYERTLTLAKSIIKDKLSVRSKK 826

Query: 923  DDIIDLSED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLV-KMG 964
            D +IDLS+D                 +VGEDFW+ATWC+ST  EGK+LEGTRIT + K G
Sbjct: 827  DKVIDLSKDEKIEKIMRAETCDELHKIVGEDFWVATWCDSTGSEGKRLEGTRITCIQKPG 886

Query: 965  ESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSD-PHFFLDSVKSWLYPSLKTST 1023
              GYDF+IRTPCTP+RW +FD EMT AWE    A    +     LD++++     L+ + 
Sbjct: 887  RLGYDFSIRTPCTPARWSDFDEEMTSAWEALCNAYCGENYGSTELDALETVRDAILRMTY 946

Query: 1024 SWKEYPDVTSTFATTGSVV 1042
             W  +  +    A TG VV
Sbjct: 947  YWYNFMPLARGTAVTGFVV 965

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186517170|ref|NP_195462.3| suppressor of RPS4-RLD 1 / tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|332661397|gb|AEE86797.1| suppressor of RPS4-RLD 1 / tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score = 1149 bits (2971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1038 (58%), Positives = 746/1038 (71%), Gaps = 96/1038 (9%)

Query: 34   ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93
            A+A + R ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DCD
Sbjct: 4    ATATSERFELAKHCSSRNWSKAIRVLDSLLAKESSILDICNRAFCYNQLELHKHVIKDCD 63

Query: 94   KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153
            KAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY+ AL Q+AD+KQ LELEELL  A
Sbjct: 64   KALLLEPFAIQAFILKGRALLALGRKQEAVLVLEQGYKSALQQTADVKQLLELEELLKDA 123

Query: 154  KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSK 213
            +++        +   + S        +A +   ET   H  S+  D  S   D  E+ + 
Sbjct: 124  RRE--------IDGILKS--------HATESPQETPAYH--SEKSDEKSDKLDNHESGAS 165

Query: 214  SSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273
            S       NG S E+                    E+ E        SK    S+ AS+ 
Sbjct: 166  S-------NGNSHESSS------------------ELGEQ-------SKIVSFSKVASKA 193

Query: 274  NRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNTN 324
            ++QS  + D+CNG + K   N + G Q NG +         D+HD L+  S    + + N
Sbjct: 194  SKQSDGNSDLCNGSVYKEKENGKCGSQINGYYESCKPCNGSDLHDNLAESSDRFGELSIN 253

Query: 325  SESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR 384
                +K SI  +K S   E+R  +S          +E+++NKK+ + RIS + SISVDFR
Sbjct: 254  G---NKISIKSSKMSHKAEARCGIS----------DESRKNKKYTIARISGTHSISVDFR 300

Query: 385  LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
            LSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQS
Sbjct: 301  LSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQS 360

Query: 445  NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            NP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV+
Sbjct: 361  NPAASEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAVK 420

Query: 505  DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+L
Sbjct: 421  DLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQEL 480

Query: 565  ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            A+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLYL
Sbjct: 481  ADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLYL 539

Query: 625  RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD 684
            R SCYHA+GEYR+A+KDYDA +D+ELD++EKFVLQCLAFYQKE+ALYTASK++SEF  FD
Sbjct: 540  RGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVLQCLAFYQKELALYTASKVSSEFLCFD 599

Query: 685  IDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVAD 744
            IDGDIDP+FKEYWCKRLHPKNVCEKVYRQPPLR+SLKKGKL++QD ++TKQK  +L  AD
Sbjct: 600  IDGDIDPMFKEYWCKRLHPKNVCEKVYRQPPLRESLKKGKLKKQDLAITKQKANILRFAD 659

Query: 745  SIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRAR 804
             IGK+IQYDCPGFL N+RQHRMAGLA IEIAQKVSK WR    EW+ S + ++KNGK+ R
Sbjct: 660  LIGKRIQYDCPGFLPNKRQHRMAGLAVIEIAQKVSKAWR---IEWRNSTKGTTKNGKKNR 716

Query: 805  RKDRINIASQNRGGAGC-STSSSSDTSSYGITEERSSGHPKMSWQDVYTLAVKWRQISEP 863
            R++R NI SQNRGGAGC S+S S  ++ Y   E+RSSG   +SWQDVY+ AV+WRQISEP
Sbjct: 717  RRERTNILSQNRGGAGCSSSSFSETSTGYASLEDRSSGRSILSWQDVYSPAVRWRQISEP 776

Query: 864  CDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNYARTLDVAKTVMKDKKYVHNKAD 923
            CDPVVWVNKLSEEFNSGFGSHTPM+LGQAKVVRYFPNY RTL +AK+++KDK  V +K D
Sbjct: 777  CDPVVWVNKLSEEFNSGFGSHTPMVLGQAKVVRYFPNYERTLTLAKSIIKDKLSVRSKKD 836

Query: 924  DIIDLSED-----------------VVGEDFWLATWCNSTAFEGKQLEGTRITLV-KMGE 965
             +IDLS+D                 +VGEDFW+ATWC+ST  EGK+LEGTRIT + K G 
Sbjct: 837  KVIDLSKDEKIEKIMRAETCDELHNIVGEDFWVATWCDSTGSEGKRLEGTRITCIQKPGR 896

Query: 966  SGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAILNSD-PHFFLDSVKSWLYPSLKTSTS 1024
             GYDF+IRTPCTP+RW +FD EMT AWE    A    +     LD++++     L+ +  
Sbjct: 897  LGYDFSIRTPCTPARWSDFDEEMTSAWEALCTAYCGENYGSTELDALETVRDAILRMTYY 956

Query: 1025 WKEYPDVTSTFATTGSVV 1042
            W  +  +    A TG VV
Sbjct: 957  WYNFMPLARGTAVTGFVV 974

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1050
TAIR|locus:2126347	1052	SRFR1 "SUPPRESSOR OF RPS4-RLD	0.647	0.646	0.657	2.30000000194e-315
DICTYBASE|DDB_G0272186	1050	DDB_G0272186 "TPR_1 repeat-con	0.147	0.147	0.417	8.1e-63
ZFIN|ZDB-GENE-080722-25	826	ttc13 "tetratricopeptide repea	0.374	0.475	0.296	1.1e-53
UNIPROTKB|Q74DZ8	266	GSU1166 "TPR domain protein" [	0.212	0.838	0.271	2.1e-14
TIGR_CMR|GSU_1166	266	GSU_1166 "TPR domain protein"	0.212	0.838	0.271	2.1e-14
UNIPROTKB|F1NNH9	599	TOMM70A "Uncharacterized prote	0.257	0.450	0.224	8.1e-12
UNIPROTKB|P72802	266	mom72 "Mitochondrial outer mem	0.173	0.684	0.279	1.6e-11
RGD|1303049	610	Tomm70a "translocase of outer	0.264	0.455	0.223	6.4e-11
MGI|MGI:106295	611	Tomm70a "translocase of outer	0.264	0.454	0.223	6.4e-11
ZFIN|ZDB-GENE-041121-17	542	stip1 "stress-induced-phosphop	0.171	0.332	0.247	2.2e-10

TAIR|locus:2126347 SRFR1 "SUPPRESSOR OF RPS4-RLD 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2400 (849.9 bits), Expect = 2.3e-315, Sum P(3) = 2.3e-315
 Identities = 463/704 (65%), Positives = 554/704 (78%)

Query:   359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL 418
             S+E+++NKK+ + RIS + SISVDFRLSRGIAQVNEG Y  AISIFD++LKE+P YPEAL
Sbjct:   275 SDESRKNKKYTIARISGTHSISVDFRLSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEAL 334

Query:   419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478
             IGRGTA AFQRELE+AI+DFT+AIQSNP+A EAWKRRGQARAALGE VEA++DL+KAL F
Sbjct:   335 IGRGTAYAFQRELESAIADFTKAIQSNPAASEAWKRRGQARAALGEYVEAVEDLTKALVF 394

Query:   479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             EPNS D+LHERGIVNFK KDF AAV+DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEE
Sbjct:   395 EPNSPDVLHERGIVNFKSKDFTAAVKDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEE 454

Query:   539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXX 598
             AHLK+IQLD N+LEAW HL QFYQ+LA+  KALEC++QVL +D R  KAY          
Sbjct:   455 AHLKSIQLDSNYLEAWLHLAQFYQELADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGL 514

Query:   599 XXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
                +KAI++LS GL I+ + IECLYLR SCYHA+GEYR+A+KDYDA +D+ELD++EKFVL
Sbjct:   515 GEHRKAIQELSIGLSIE-NTIECLYLRGSCYHAVGEYRDAVKDYDATVDVELDAVEKFVL 573

Query:   659 QCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRD 718
             QCLAFYQKE+ALYTASK++SEF  FDIDGDIDP+FKEYWCKRLHPKNVCEKVYRQPPLR+
Sbjct:   574 QCLAFYQKELALYTASKVSSEFLCFDIDGDIDPMFKEYWCKRLHPKNVCEKVYRQPPLRE 633

Query:   719 SLKKGKLRRQDFSVTKQKTALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKV 778
             SLKKGKL++QD ++TKQK  +L  AD IGK+IQYDCPGFL N+RQHRMAGLA IEIAQKV
Sbjct:   634 SLKKGKLKKQDLAITKQKANILRFADLIGKRIQYDCPGFLPNKRQHRMAGLAVIEIAQKV 693

Query:   779 SKIWRSLQAEWKYSNRSSSKNGKRARRKDRINIASQNRGGAGCXXXXXXXXXX-YGITEE 837
             SK WR    EW+ S + ++KNGK+ RR++R NI SQNRGGAGC           Y   E+
Sbjct:   694 SKAWR---IEWRNSTKGTTKNGKKNRRRERTNILSQNRGGAGCSSSSFSETSTGYASLED 750

Query:   838 RSSGHPKMSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRY 897
             RSSG   +SWQDVY+ AV+WRQISEPCDPVVWVNKLSEEFNSGFGSHTPM+LGQAKVVRY
Sbjct:   751 RSSGRSILSWQDVYSPAVRWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMVLGQAKVVRY 810

Query:   898 FPNYARTLDVAKTVMKDKKYVHNKADDIIDLSED-----------------VVGEDFWLA 940
             FPNY RTL +AK+++KDK  V +K D +IDLS+D                 +VGEDFW+A
Sbjct:   811 FPNYERTLTLAKSIIKDKLSVRSKKDKVIDLSKDEKIEKIMRAETCDELHNIVGEDFWVA 870

Query:   941 TWCNSTAFEGKQLEGTRITLV-KMGESGYDFAIRTPCTPSRWDEFDAEMTMAWEVDWEAI 999
             TWC+ST  EGK+LEGTRIT + K G  GYDF+IRTPCTP+RW +FD EMT AWE    A 
Sbjct:   871 TWCDSTGSEGKRLEGTRITCIQKPGRLGYDFSIRTPCTPARWSDFDEEMTSAWEALCTAY 930

Query:  1000 LNSD-PHFFLDSVKSWLYPSLKTSTSWKEYPDVTSTFATTGSVV 1042
                +     LD++++     L+ +  W  +  +    A TG VV
Sbjct:   931 CGENYGSTELDALETVRDAILRMTYYWYNFMPLARGTAVTGFVV 974

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0032947 "protein complex scaffold" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

DICTYBASE|DDB_G0272186 DDB_G0272186 "TPR_1 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 349 (127.9 bits), Expect = 8.1e-63, Sum P(5) = 8.1e-63
 Identities = 73/175 (41%), Positives = 111/175 (63%)

Query:   846 SWQDVYTLAVKWRQISEPCDPVVWVNKLS-EEFNSGFGSHTPMILGQAKVVRYFPNYART 904
             SW+D+Y + VKWRQISEP DPV W + LS E+F  GFGSHTP+I GQ KVVRY+P + ++
Sbjct:   741 SWRDLYDIGVKWRQISEPNDPVWWGDLLSPEQFKEGFGSHTPIITGQCKVVRYYPMFEKS 800

Query:   905 LDVAKTVM--KDKKYVHNKADDIIDLSED---------VVGEDFWLATWCNSTAFEGKQL 953
              ++ K ++  +    + N+   I+D  E          ++ +DF++ T C S + E K +
Sbjct:   801 FEIMKLLLPIQHPSLISNQT--ILDQLESATTCKDLYKLIKKDFFVVTPCYSRSNENKVM 858

Query:   954 EGTRITLVKMGESGYDFAIRTPCTPSRWDEFDAEMTMAWE--VD----WEAILNS 1002
             EGTR+TL  +   GY+FAIRTP TP RW+++  E+ + W+  +D    ++ I+NS
Sbjct:   859 EGTRLTLQYIHPEGYEFAIRTPSTPYRWEQYSQELDIIWDQLIDKVFIYQNIINS 913

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-080722-25 ttc13 "tetratricopeptide repeat domain 13" [Danio rerio (taxid:7955)]

 Score = 445 (161.7 bits), Expect = 1.1e-53, Sum P(5) = 1.1e-53
 Identities = 120/405 (29%), Positives = 202/405 (49%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA---RAFQ--RELEAAISDFT 439
             L+ G   +  G Y  AI  F  +L+ DP    A+ GRG A   ++ Q  +  + A+ + +
Sbjct:   113 LAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKSLQDIKNADLALYELS 172

Query:   440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
               I   P+  E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+
Sbjct:   173 RVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDY 231

Query:   500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
              AA+ED    ++L K    A  Y GL     G  K+A E   +A++L  +F++A+  L Q
Sbjct:   232 MAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQ 291

Query:   560 FYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNI 619
              Y++L + E A+E  Q+ L +D+   ++              ++AI +    L ++P N 
Sbjct:   292 AYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNE 351

Query:   620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF-YQKEIALYTASKINS 678
              C Y++   + A+G++ E IK     +  +    +K   + L   Y +E + Y  S ++ 
Sbjct:   352 VCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLLGQKASSEYLKVKYLREYSRYLHSHLDV 411

Query:   679 EFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQD-FSVTKQKT 737
                 +++D D+   FK +W K L P  + E    QP L+  +K    +  D +S   QK 
Sbjct:   412 PVAEYNVDQDLPGNFKNHWAKNL-PFLI-EDYEEQPGLQPHIKDVLPQNFDSYSAEVQK- 468

Query:   738 ALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIW 782
              L+  AD +G  +QYD  GFL N R HR  GLA IE+ Q + + W
Sbjct:   469 -LICTADHLGALMQYDTSGFLPNLRIHRAMGLATIEVMQAMQRTW 512

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1166 GSU_1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NNH9 TOMM70A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
 Identities = 65/289 (22%), Positives = 116/289 (40%)

Query:   369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDP---MYPEALIGRGTA 424
             C   I        +  L R    +  G   +A    DQ++  ED    +   ALI RG+ 
Sbjct:   308 CTKEIEAKGKYMAEALLLRATFYLLIGNANAAKPDLDQVISMEDANVKLRANALIKRGSM 367

Query:   425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                Q++   +  DF  A   +P   + +  RGQ +  L +  EA++D  + +   P+SA 
Sbjct:   368 YMQQQQPALSTQDFNMAADIDPQNADVYHHRGQLKILLDQIEEAVEDFDECIRLRPDSAL 427

Query:   485 ILHERGIVNFK--FKDFN-----AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
                ++    ++  +   N      A++     +K   +    Y     AL+   ++ KA+
Sbjct:   428 AQAQKCFALYRQAYTGNNPLPVQVAMKGFEDVIKKFPKCAEGYALYAQALTDQQQFGKAD 487

Query:   538 EAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXX 593
             E + K I L+ +    + H      Q+ QDL   +K LE + + + ID +   AY     
Sbjct:   488 EMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDNKCDFAYETMGT 544

Query:   594 XXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                      KAI+  +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   545 IEVQRGNLDKAIEMFNKAINLAKSEMEMAHLYSLCDAAYAQ-TEVAKKY 592

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P72802 mom72 "Mitochondrial outer membrane 72K protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 182 (69.1 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 52/186 (27%), Positives = 96/186 (51%)

Query:   388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
             G+ ++    ++ AI+ F + +K +    +A   RG A+    + +AAI+D+ +AI  NP 
Sbjct:    49 GVDKLAAQNFSGAIADFTESIKLNDQDADAYYNRGYAKHVLGQYQAAITDYNQAISLNPE 108

Query:   448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
                A   R  A   L +  +AIQD S A+E  PN AD    RG    +  +   A+ D +
Sbjct:   109 FAYALGNRCYAYFLLSQYDKAIQDCSNAIEINPNYADFYVYRGNSQSQLGNETTAIADYN 168

Query:   508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH--LTQFYQDLA 565
               ++++ ++ +AY    L  + + + ++A   + ++IQLD +  EA+ +  LTQ+   L 
Sbjct:   169 DAIRINAQHANAYYNRALTHNRLKQDQQALADYNQSIQLDPDSAEAYFNRGLTQYR--LG 226

Query:   566 NSEKAL 571
             +  KA+
Sbjct:   227 DEPKAI 232

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

RGD|1303049 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
 Identities = 67/300 (22%), Positives = 117/300 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   315 IISECSKEIDAQGKY----MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---L 367

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RGT    Q++   +  DF  A + +P   + +  RGQ +  L    EA+ D  
Sbjct:   368 RANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFD 427

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
               +   P  A         L+ +           AA++     +K        Y     A
Sbjct:   428 ACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEVIKKFPRCAEGYALYAQA 487

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   488 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 544

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
             +   AY             +KAI   +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   545 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQ-TEVAKKY 603

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

MGI|MGI:106295 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (yeast)" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
 Identities = 67/300 (22%), Positives = 117/300 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   316 IISECSKEIDAQGKY----MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---L 368

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RGT    Q++   +  DF  A + +P   + +  RGQ +  L    EA+ D  
Sbjct:   369 RANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFD 428

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
               +   P  A         L+ +           AA++     +K        Y     A
Sbjct:   429 ACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEIIKKFPRCAEGYALYAQA 488

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   489 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 545

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
             +   AY             +KAI   +  + +  S +E  +L + C  A  +  E  K Y
Sbjct:   546 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLCDAAHAQ-TEVAKKY 604

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041121-17 stip1 "stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 48/194 (24%), Positives = 85/194 (43%)

Query:   366 KKFCVTRISKSKSISVDFR-LSRGIAQVNEG-----KYASAISIFDQILKEDPMYPEALI 419
             ++ C   I   +    D+R +++  A++        KY  A+  F++ L E    P+ L 
Sbjct:   278 RELCEKAIDVGRENREDYRQIAKAYARIGNSYFKQEKYKEAVQFFNKSLTEHRT-PDVL- 335

Query:   420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  +  Q E E  + +  +    NP      K +G      G+   A++  S+A++  
Sbjct:   336 -----KKCQ-EAEKILKEQEKVAYINPDLALEEKNKGNDAFQKGDYPLAMKHYSEAIKRN 389

Query:   480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             P  A +   R     K  +F  A++D   C+ LD      YT  G AL ++ ++ KA + 
Sbjct:   390 PYDAKLFSNRAACYTKLLEFQLALKDCEECINLDSTFIKGYTRKGAALEAMKDFSKAMDV 449

Query:   540 HLKAIQLDRNFLEA 553
             + KA++LD N  EA
Sbjct:   450 YQKALELDSNSKEA 463

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1050
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-22
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-15
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-13
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-13
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-10
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-07
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	5e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	7e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-07
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	8e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	4e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	6e-06
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	8e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-05
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	3e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	5e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	9e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	9e-05
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	2e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	5e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	5e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	7e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	7e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	8e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	8e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	0.001
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.002
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	0.002

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 99.5 bits (246), Expect = 1e-22
 Identities = 84/290 (28%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTAR-AFQRELEAAISDFTEAIQSNPSAGEA- 451
                 A++I  + L +      AL+  G A      EL  A+    EA++  P++  A 
Sbjct: 1   LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60

Query: 452 -WKRRGQARAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSA 508
                  A   LG   EA++ L KALE E  PN A+ L   G++      +  A+E L  
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 509 CVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLD---RNFLEAWGHLTQFYQDL 564
            + LD +   A   L L AL  +G+Y++A E + KA++LD       EA   L    + L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180

Query: 565 ANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
              E+ALE L++ L ++    ++A    GLL   LG++++A++     L +DP N E LY
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALY 240

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673
             A     +G Y EA++  + AL+L+ D     +   L   +    L  A
Sbjct: 241 NLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEKA 290

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 37/100 (37%), Positives = 57/100 (57%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EA    G     LG+  EA++   KALE +P++AD  +      +K   +  A+ED    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LD +N  AY  LGLA   +G+Y++A EA+ KA++LD N
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 32/99 (32%), Positives = 57/99 (57%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A   LG     +G+Y +A E + KA++LD +  +A+ +L   Y  L   E+ALE  ++ L
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +D   +KAY+  GL  + LG++++A++     L +DP+
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 87.1 bits (216), Expect = 3e-17
 Identities = 62/273 (22%), Positives = 112/273 (41%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           S+  +L      + E ++  A ++ D++L  DP   +AL+ +G        +E A++ + 
Sbjct: 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +AI   P+               GE  EA +     L+  PNS    + + +V+F+ K++
Sbjct: 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A E L   +K   E   A    G +   +G  ++A +   + ++   N  +A   L  
Sbjct: 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
               L   ++A+  L   L +D     A  L G     LG  +KA + L+    +DP N 
Sbjct: 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA 397

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
                      + G+  EAI D + A  L+ + 
Sbjct: 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 86.7 bits (215), Expect = 3e-17
 Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 4/265 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+A +  G+   A   ++Q L  DP    A +G       +   + A +   E + ++P
Sbjct: 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +A   +G    +LG    A+    KA+   PN+  +L     +  +  +F  A +  
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
            A +K    +  A+    L       Y+ A E    A++    +L A      +++   L
Sbjct: 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ--L 308

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            N E+A + L Q+L       +A  L   +   LG+  +AI  LS  LG+DP +   L L
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

Query: 625 RASCYHAIGEYREAIKDYDAALDLE 649
               Y A+G++ +A +    A +L+
Sbjct: 369 LGEAYLALGDFEKAAEYLAKATELD 393

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 30/98 (30%), Positives = 56/98 (57%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           EA  +L   Y  L + ++ALE  ++ L +D   + AY+      + LG++++A++D    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L +DP N +  Y     Y+ +G+Y EA++ Y+ AL+L+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 80.9 bits (200), Expect = 2e-15
 Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 5/255 (1%)

Query: 415 PEALIGRGTARAFQRELE--AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           PE LI    A+++ ++ +  AAI     A+Q +P+  EA    G+   ALG+   A ++L
Sbjct: 22  PEELIEA--AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKEL 79

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIG 531
            KAL        +L            F   +++L     LD E  +      GLA   +G
Sbjct: 80  RKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
           + + A++++ +A+ +D   L A   L Q        ++A   + +VL  D     A  L+
Sbjct: 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
           G LL  LG  + A+      + + P+NI  L   A+     GE+ EA K  DA L    +
Sbjct: 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN 259

Query: 652 SMEKFVLQCLAFYQK 666
           S     L+ L  +QK
Sbjct: 260 SPLAHYLKALVDFQK 274

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 31/99 (31%), Positives = 55/99 (55%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
           + L   G + +K  D++ A+E     ++LD +N  AY  L  A   +G+Y++A E + KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           ++LD +  +A+ +L   Y  L   E+ALE  ++ L +D 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 70.9 bits (174), Expect = 7e-15
 Identities = 28/97 (28%), Positives = 48/97 (49%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+ G      G Y  A+  +++ L+ DP   +A      A     + E A+ D+ +A++ 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +P   +A+   G A   LG+  EA++   KALE +PN
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 78.2 bits (193), Expect = 1e-14
 Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 24/261 (9%)

Query: 404 FDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           F Q+L E        D    E L  RG A     +LE A   + +A+  +P +  A  + 
Sbjct: 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KL 163

Query: 456 GQARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           G A+ AL      EA   + + L  +P + D L  +G +     +   A+      + L 
Sbjct: 164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR 223

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANS 567
             N +    L   L   GE+++A E H  A+          ++L+A   L  F +   N 
Sbjct: 224 PNNIAVLLALATILIEAGEFEEA-EKHADALLKKAPNSPLAHYLKA---LVDFQKK--NY 277

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A E LQ  L     +  A  L G   + LG  ++A + L+  L   P++ +   L AS
Sbjct: 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337

Query: 628 CYHAIGEYREAIKDYDAALDL 648
               +G   EAI     AL L
Sbjct: 338 IQLRLGRVDEAIATLSPALGL 358

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 76.3 bits (188), Expect = 6e-14
 Identities = 68/310 (21%), Positives = 113/310 (36%), Gaps = 42/310 (13%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G A +  G +  A     +  + DP    A    G ++  Q +   AI+D   A Q +P 
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429

Query: 448 AGEA-------WKRRGQARAAL---------------------------GESVEAIQDLS 473
            G A       + R GQ   AL                           G+  +A +   
Sbjct: 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KAL  EP+          ++ +  + + A++     + +D +N  A     LAL+ +   
Sbjct: 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI----LALAGLYLR 545

Query: 534 KKAEEAHL----KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
              EE  +    KA +L+   +E    L Q+Y      +KAL  L +         +A+ 
Sbjct: 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           + G      G   KA+      L + P +   L L A  Y  +  Y +AI     AL+L+
Sbjct: 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665

Query: 650 LDSMEKFVLQ 659
            D+ E  +  
Sbjct: 666 PDNTEAQIGL 675

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           EAL+  G       + + A+  + +A++ +P   +A+     A   LG+  EA++D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           LE +P++A   +  G+  +K   +  A+E     ++LD  
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 74.0 bits (182), Expect = 2e-13
 Identities = 53/302 (17%), Positives = 104/302 (34%), Gaps = 10/302 (3%)

Query: 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
           +S     S +  +    + + + KY +AI      L++DP   EA    G       +  
Sbjct: 14  LSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYA 73

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEF--EPNSADILHER 489
           AA  +  +A+       +       ARA L +   + + D         +  +A++L  R
Sbjct: 74  AAEKELRKALSLGYPKNQV--LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALR 131

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLD 547
           G+          A +       L  + +S Y  LGLA    +   + +A     + +  D
Sbjct: 132 GLAYLGLGQLELAQKSYEQA--LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
              ++A          L N E AL   ++ + +             +L   G+ ++A K 
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME-KFVLQCLAFYQK 666
             + L   P++    YL+A        Y +A +    AL    + +    +     +   
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309

Query: 667 EI 668
            +
Sbjct: 310 NL 311

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 74.3 bits (182), Expect = 2e-13
 Identities = 96/420 (22%), Positives = 160/420 (38%), Gaps = 75/420 (17%)

Query: 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD--NKSSDSTESRSK 347
           K  ++++  R+        +  + +  S    N   E   +    D  + ++ S E R K
Sbjct: 66  KPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKK 125

Query: 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI 407
            + K   LKE  N+A RNK F       +K+I +               Y+ AI      
Sbjct: 126 YAAK---LKEKGNKAYRNKDF-------NKAIKL---------------YSKAI-----E 155

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467
            K DP+Y         A     + E  + D T A++ +P   +A  RR  A   LG+  +
Sbjct: 156 CKPDPVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212

Query: 468 AIQDLSKAL---EFEPNSADILHERGIVNF-------KFKDFNAAV-------------- 503
           A+ DL+ +     F    +    ER +  F         +     +              
Sbjct: 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR 272

Query: 504 -----EDLSACVKLDKENKSAYTYLGLAL--SSIGE-YKKAEEAHLKAIQLDRNFL---E 552
                  L    +LD+E  +    LGL    S   E Y++A  A  K   LD   L   E
Sbjct: 273 PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK--ALDLGKLGEKE 330

Query: 553 AWGH-LTQFYQDLANS-EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
           A    L   ++ L     +AL  L + + +D R +++Y  R  +   LG   KA +D   
Sbjct: 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV-LQCLAFYQKEIA 669
            L ++  + +  Y RA  +   GE+ +A KDY  ++DL+ D +   + L    + +  IA
Sbjct: 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 69.5 bits (168), Expect = 1e-12
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 5/173 (2%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRG-TARAFQRELEAAISDFTEAIQ 443
           L+ G+     GKY  A+ + ++ L  DP    A       A     + E A+  + +A++
Sbjct: 99  LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158

Query: 444 SNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVNFKFKDF 499
            +P      EA    G    ALG   EA++ L KAL+  P+  A+ L   G++  K   +
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
             A+E     ++LD +N  A   L L L  +G Y++A EA  KA++LD +   
Sbjct: 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYN 271

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-YREAIKDYD 643
           ++A    G  L  LG + +AI+     L +DP N E  Y  A  Y  +G+ Y EA++D +
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 644 AALDL 648
            AL+L
Sbjct: 63  KALEL 67

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 63.9 bits (156), Expect = 4e-10
 Identities = 64/291 (21%), Positives = 106/291 (36%), Gaps = 33/291 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           EG    AI  F+++L  DP    A++            E A++   +A + NP   E   
Sbjct: 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q     G+  +A+  L++A +  P+S +     G       D N AV      + L 
Sbjct: 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            ++  A   L  A + +  Y KA  +  +A++L  +  EA   L Q       +E A + 
Sbjct: 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691

Query: 574 LQQV----------------LYI-DKR-------FSKAYHLRG-----LLLH----GLGQ 600
            + +                LY+  K        + KA          + LH      G 
Sbjct: 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGN 751

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
             +A+K L + L   P++       A  Y A  +Y +AIK Y   +    D
Sbjct: 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 63.6 bits (155), Expect = 4e-10
 Identities = 62/308 (20%), Positives = 110/308 (35%), Gaps = 38/308 (12%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           VD  L +G   ++ G    A++ + + +   P     L+   T      E E A      
Sbjct: 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
            ++  P++  A   +           +A + L  AL+  P     L   G   ++  +  
Sbjct: 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312

Query: 501 AAVEDLSACVK----------------------------------LDKENKSAYTYLGLA 526
            A + L+  +K                                  LD ++ +A + LG A
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
             ++G+++KA E   KA +LD     A   L        +  +A+  L+    +D    +
Sbjct: 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR 432

Query: 587 AYHLRGLLLHGL--GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           A  L  L+L  L  GQ  KA+          P N     L  + Y   G+  +A + ++ 
Sbjct: 433 ADLL--LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490

Query: 645 ALDLELDS 652
           AL +E D 
Sbjct: 491 ALSIEPDF 498

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEA 539
           ++A+ L   G   FK  D++ A+E     ++LD +N  AY  L LA   +G+ Y++A E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 540 HLKAIQLD 547
             KA++LD
Sbjct: 61  LEKALELD 68

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           +A    G L + LG + +A++     L +DP N +  Y  A+ Y+ +G+Y EA++DY+ A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 646 LDLELDS------------MEKFVLQCLAFYQKEIAL 670
           L+L+ D+                  + L  Y+K + L
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDFNAAVEDLSA 508
           EA K  G A   LG+  EAI+   KALE +P++A+  +   +   K  KD+  A+EDL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 509 CVKLDK 514
            ++LD 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 58.9 bits (142), Expect = 1e-08
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           Y  A   F++ L    +  +  I    RGT +  + +   A++D +++I+ +P   +++ 
Sbjct: 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           +R      LG+  +A +D  KAL+      DI + R  ++F   +F  A +D    + LD
Sbjct: 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
            +   ++  LG+     G    +     +     +NF EA
Sbjct: 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCK---KNFPEA 466

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLS 473
            EAL   G A     + + AI  + +A++ +P   EA+     A   LG+   EA++DL 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 474 KALEFEP 480
           KALE +P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 58.6 bits (142), Expect = 2e-08
 Identities = 58/262 (22%), Positives = 96/262 (36%), Gaps = 22/262 (8%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
            YA AI+   + L+  P   EA IG        +  E+A        + +P A   ++  
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G       +   AIQ   KAL+  P+S + +     +     +   AV+ L A +K    
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS-GNTAEAVKTLEAWLKTHPN 768

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           +    T L     +  +Y KA + +   ++   +      +L   Y +L +  +ALE  +
Sbjct: 769 DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAE 827

Query: 576 QVLYIDKRFSKAYHLR----------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
                     +A  L           G LL   G+  +A+  L   + I P      Y  
Sbjct: 828 ----------RALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877

Query: 626 ASCYHAIGEYREAIKDYDAALD 647
           A    A G   EA K+ D  L+
Sbjct: 878 ALALLATGRKAEARKELDKLLN 899

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            N A  Y +L  ++  + D +KAL+LDP   +AY   G A+  LG+ EEAL  +EK  E 
Sbjct: 38  YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 369 CVT--RISKSKSISV--DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA 424
           CVT    S+    +     RL   +  + +G YA A    ++ L+ DP Y  A + R   
Sbjct: 19  CVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY 78

Query: 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNS 482
                E + A   + +A+   P+ G+     G    A G   EA+Q   +AL        
Sbjct: 79  YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
           +D L   G+   K   F+ A E L   ++LD +       L LA         A 
Sbjct: 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAP 191

Length = 250

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 53.1 bits (127), Expect = 7e-07
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 13/211 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG  +  +GK+  A++   + ++ DP   ++ I R +      + + A  DF +A++ N 
Sbjct: 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +  R Q     GE  +A +D  K+++ +P+      + G+  +K     +++   
Sbjct: 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGH--- 556
             C K   E    Y Y G  L    ++ +A E    AI+L++       N L        
Sbjct: 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           L Q+ QD   +E   E   + L ID     A
Sbjct: 517 LFQWKQDFIEAENLCE---KALIIDPECDIA 544

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTE 440
           +   + G A    G Y  AI  +++ L+ DP   EA      A     +  E A+ D  +
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 441 AIQSNP 446
           A++ +P
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 35/148 (23%), Positives = 56/148 (37%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A    G   S++++  +     P   E L  +G  +        A+S   +A +  P+  
Sbjct: 75  ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A   LG   EA +   +ALE  PN   I +  G+      D   A   L   
Sbjct: 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAE 537
                 +      L L +   G++++AE
Sbjct: 195 YLSPAADSRVRQNLALVVGLQGDFREAE 222

Length = 257

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           + D   +   A    GKY  A+  +++ L+ DP   +A    G A     + E A+  + 
Sbjct: 33  NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92

Query: 440 EAIQSNPS 447
           +A++ +P+
Sbjct: 93  KALELDPN 100

Length = 100

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480
              A     + + A++    A+   P A EA    G+A    G   EA   L  AL  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 481 NSA 483
           +  
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 18/172 (10%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-------- 549
           D   A E+L   ++ D ++  AY  L L    +GE +KAE++  +A+ L+ N        
Sbjct: 46  DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105

Query: 550 --FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             FL   G   Q  Q     E+A+E     LY   + +++    GL     G   KA K 
Sbjct: 106 GTFLCQQGKYEQAMQQF---EQAIE---DPLY--PQPARSLENAGLCALKAGDFDKAEKY 157

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           L+  L IDP   E L   A  Y+  G+Y++A    +        + E   L 
Sbjct: 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG 209

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+   A +  G Y  A++  +  L   P+  EAL+  G A   Q  L  A +    A+ +
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 445 NPSA 448
           +P  
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 48.5 bits (116), Expect = 8e-06
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL--- 486
           E+EA I+     +Q NP   E W   G+A  ALG + +A+     AL    ++ +IL   
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL 196

Query: 487 ------HERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
                      +  K +     A       + LD  N  A + L  A    G+Y +A
Sbjct: 197 AEALYYQAGQQMTAKARALLRQA-------LALDPANIRALSLLAFAAFEQGDYAEA 246

Length = 287

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALEC 573
           +N  A   LG AL  +G+Y +A EA+ KA++LD +  EA+ +L   Y  L  + E+ALE 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 574 LQQVLYIDK 582
           L++ L +D 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+   +++L +      AY L        GQ+K+A + L   L +D S+  C YL A 
Sbjct: 6   ENAIFLAEKLLALTPSNEDAYLL-AQCYFLQGQYKRAYELLRK-LKLDNSS-GCRYLLAQ 62

Query: 628 CYHAIGEYREAIKDYDAA 645
           C   +G+Y EAI   + A
Sbjct: 63  CLLKLGKYDEAIAVLEKA 80

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
           A+   ++A++ +PN+A++  +R   N K  +F  AV D +  ++LD     AY   G A 
Sbjct: 21  AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

Query: 528 SSIGEYKKAEEA 539
             + EY+ A+ A
Sbjct: 81  MKLEEYQTAKAA 92

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSS 610
           EA  +L      L + ++A+E  ++ L +D   ++AY+   L    LG  +++A++DL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 611 GLGIDP 616
            L +DP
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 14/58 (24%), Positives = 18/58 (31%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                   G + +A+  L + L   P   E L L        G   EA     AAL  
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKA 570
           +A   L L L  +G+Y +A E   KA++L R           A  +L + Y  L + ++A
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 571 LECLQQVL 578
           LE L++ L
Sbjct: 66  LEYLEKAL 73

Length = 78

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +A     ++ A ++   AA +     ++ NP      K         G++  ++  L K
Sbjct: 34  AKATGAPESSLAMRQTQGAAAALGAAVLR-NPEDLSIAKLATALYLR-GDADSSLAVLQK 91

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +    P   ++L  +G    +  +F  AV  L    +L   +  A+  LG AL  +G + 
Sbjct: 92  SAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151

Query: 535 KAEEAHLKAIQLDRN 549
           +A  A+ +A++L  N
Sbjct: 152 EARRAYRQALELAPN 166

Length = 257

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +T+AI  +P+  E +  R QA   LG   EA+ D +KA+E +P+ A     +G 
Sbjct: 19  ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78

Query: 492 VNFKFKDFNAA 502
              K +++  A
Sbjct: 79  ACMKLEEYQTA 89

Length = 356

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAI 639
           A +   L+L  LG + +A++ L   L +        P     L   A  Y A+G+Y EA+
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 640 KDYDAALDL 648
           +  + AL L
Sbjct: 67  EYLEKALAL 75

Length = 78

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 394 EGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--- 447
            G YA AI  F   LK   +    P A    G A   Q +   A   F   ++  P    
Sbjct: 13  AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPK 72

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A +A  + G +   LG+  +A   L + ++  P S+
Sbjct: 73  APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 108

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.7 bits (101), Expect = 3e-04
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAK-LCSLRNWSKAIRILDSLL--AQSY 67
           Y L    + +   ++ + +D  +     A + L   L +L  + +A+ +L+  L      
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           + + + N    Y +L  ++  +   +KAL+LDP   +A          LGR EEAL   E
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260

Query: 128 KGYE 131
           K  E
Sbjct: 261 KALE 264

Length = 291

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++L+ N 
Sbjct: 3   ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +A    G A   LG+  EA++   KALE  PN
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 532 EYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQDLA-------NSEKALECLQQVLYIDK 582
           E++KA +    L  +      +E    + QFY +LA       + ++A E L++ L  DK
Sbjct: 156 EWEKAIDVAERLVKLGGQTYRVE----IAQFYCELAQQALASSDVDRARELLKKALQADK 211

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAI 639
           +  +A  + G +    G ++KA++ L   L  +P  + E L +   CY  +G+  E +
Sbjct: 212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269

Length = 389

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           RG    +LG    A  D S+AL   P+  ++ +  GI   +  +F+AA E   + ++LD 
Sbjct: 71  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALE 572
               A+   G+AL   G YK A++  L   Q D N  F   W +L +  Q L + ++A  
Sbjct: 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE--QKL-DPKQAKT 187

Query: 573 CLQQ 576
            L+Q
Sbjct: 188 NLKQ 191

Length = 297

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            E LY   + Y  +G+Y EA++ Y+ AL+L+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.5 bits (103), Expect = 6e-04
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 13/170 (7%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
            + ++ S     +L R  A +  G  A A+   +  LK  P               Q++ 
Sbjct: 729 ALKRAPSSQNAIKLHR--ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786

Query: 432 EAAISDFTEAIQSNPSAGE-----AWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
           + AI  +   ++  P         AW               A++   +AL+  PN   IL
Sbjct: 787 DKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP------RALEYAERALKLAPNIPAIL 840

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
              G +  +  + + A+  L   V +  E  +   +L LAL + G   +A
Sbjct: 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 46/220 (20%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDF 438
              R+   +  + +G    A    D+ L+ DP    A +    A  +Q+  ELE A   F
Sbjct: 31  AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL--ALYYQQLGELEKAEDSF 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
             A+  NP+ G+     G      G+  +A+Q                            
Sbjct: 89  RRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ---------------------------Q 121

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
           F  A+ED      L  +   +    GL     G++ KAE+   +A+Q+D    E+   L 
Sbjct: 122 FEQAIEDP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA 176

Query: 559 QFYQDLANSEKALECLQQV----------LYIDKRFSKAY 588
           + Y      + A   L++           L++  R ++A 
Sbjct: 177 ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            + LY   + Y  +G+Y EA++ Y+ AL+L 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELN 31

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++LD N 
Sbjct: 3   ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 42.8 bits (101), Expect = 8e-04
 Identities = 27/130 (20%), Positives = 46/130 (35%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
                  A  GR        + + A+      I + P      +  G       ++ EAI
Sbjct: 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI 360

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           + L KAL  +PNS  +         K      A+  L+  +  D E+ + +  L  A + 
Sbjct: 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420

Query: 530 IGEYKKAEEA 539
           +G   +A  A
Sbjct: 421 LGNRAEALLA 430

Length = 484

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           + + N    Y +L  +   +   +KAL+LDP    AY     A+  LG+ EEAL  +EK 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 130 YEHA 133
            E  
Sbjct: 61  LELD 64

Length = 100

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 22/100 (22%), Positives = 46/100 (46%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A  NE ++  A+ ++ ++L+ DP  P+ L+G     A   +   A+    E +   P+  
Sbjct: 95  AYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDA 154

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
             ++       A  + ++A+Q   +AL  EP++ +   E 
Sbjct: 155 ARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALEL 194

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 2/166 (1%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            RA    L    +    A +S      A   R       G+  EA++ L   +  +P++ 
Sbjct: 281 IRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP 340

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY-LGLALSSIGEYKKAEEAHLK 542
             L   G +  +      A+E L   + LD  N       L  AL   G+ ++A     +
Sbjct: 341 YYLELAGDILLEANKAKEAIERLKKALALDP-NSPLLQLNLAQALLKGGKPQEAIRILNR 399

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
            +  D      W  L Q Y +L N  +AL    +   +  R  +A 
Sbjct: 400 YLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445

Length = 484

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 545 QLDRNFLEA-WGHLTQFYQ--DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            LD   LE  +      YQ      + K  + L      + R+             L ++
Sbjct: 11  GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL---AACCQMLKEY 67

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           ++AI   +    +DP +    +  A C  A+GE   A+K  D A+++
Sbjct: 68  EEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1050
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.93
KOG1126	638	consensus DNA-binding cell division cycle control	99.93
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.93
KOG1126	638	consensus DNA-binding cell division cycle control	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
KOG2003	840	consensus TPR repeat-containing protein [General f	99.92
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.91
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.9
PRK14574	822	hmsH outer membrane protein; Provisional	99.89
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
KOG2003	840	consensus TPR repeat-containing protein [General f	99.88
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.88
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.88
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.88
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.87
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.84
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.84
PRK12370	553	invasion protein regulator; Provisional	99.84
KOG2076	895	consensus RNA polymerase III transcription factor	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.82
KOG1129	478	consensus TPR repeat-containing protein [General f	99.82
PRK12370	553	invasion protein regulator; Provisional	99.81
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.81
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.8
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.8
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.78
KOG1125	579	consensus TPR repeat-containing protein [General f	99.78
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.77
KOG1129	478	consensus TPR repeat-containing protein [General f	99.77
PRK11189	296	lipoprotein NlpI; Provisional	99.77
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.77
KOG1125	579	consensus TPR repeat-containing protein [General f	99.76
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.76
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.75
PLN03218	1060	maturation of RBCL 1; Provisional	99.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.74
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.74
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.74
PLN02789	320	farnesyltranstransferase	99.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.72
PLN02789	320	farnesyltranstransferase	99.72
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.71
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.7
PLN03218	1060	maturation of RBCL 1; Provisional	99.7
PLN03077	857	Protein ECB2; Provisional	99.69
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.69
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.68
KOG0553	304	consensus TPR repeat-containing protein [General f	99.68
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.68
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.66
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.66
PLN03077	857	Protein ECB2; Provisional	99.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.64
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.64
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.57
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.53
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.53
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.52
KOG4234	271	consensus TPR repeat-containing protein [General f	99.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.49
PRK15359	144	type III secretion system chaperone protein SscB;	99.47
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.43
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.4
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.39
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.38
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.37
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.37
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.35
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.35
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.34
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.33
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
PRK04841	903	transcriptional regulator MalT; Provisional	99.31
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.31
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.3
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.28
PRK04841	903	transcriptional regulator MalT; Provisional	99.27
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.24
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.21
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.2
KOG0553	304	consensus TPR repeat-containing protein [General f	99.17
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.17
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.14
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.1
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.07
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.07
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.06
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.06
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.01
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.99
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.99
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.97
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.96
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.93
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.93
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.9
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.87
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.86
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.81
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.8
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.8
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.8
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.8
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.79
PRK11906	458	transcriptional regulator; Provisional	98.78
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.77
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.75
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.74
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.73
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.73
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.73
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.72
PRK11906	458	transcriptional regulator; Provisional	98.71
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.71
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.68
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.65
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.65
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.64
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.62
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.61
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.61
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.6
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.59
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.58
PRK15331	165	chaperone protein SicA; Provisional	98.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.56
PRK15331	165	chaperone protein SicA; Provisional	98.53
PRK10803	263	tol-pal system protein YbgF; Provisional	98.5
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.49
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.45
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.45
PRK10803	263	tol-pal system protein YbgF; Provisional	98.44
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.42
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.41
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.4
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.39
KOG4555	175	consensus TPR repeat-containing protein [Function	98.39
PF12688	120	TPR_5: Tetratrico peptide repeat	98.36
PF12688	120	TPR_5: Tetratrico peptide repeat	98.35
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.32
KOG4234	271	consensus TPR repeat-containing protein [General f	98.31
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.31
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.31
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.29
KOG2471	696	consensus TPR repeat-containing protein [General f	98.29
KOG1586	288	consensus Protein required for fusion of vesicles	98.28
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.26
PF13371	73	TPR_9: Tetratricopeptide repeat	98.23
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.2
PF13512	142	TPR_18: Tetratricopeptide repeat	98.19
PF13371	73	TPR_9: Tetratricopeptide repeat	98.19
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.18
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.17
KOG1586	288	consensus Protein required for fusion of vesicles	98.13
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.11
KOG2471	696	consensus TPR repeat-containing protein [General f	98.11
PF13512	142	TPR_18: Tetratricopeptide repeat	98.05
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.03
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.02
KOG4555	175	consensus TPR repeat-containing protein [Function	98.0
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.93
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.92
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.91
KOG1585	308	consensus Protein required for fusion of vesicles	97.86
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.86
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.84
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.83
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.8
KOG1310	758	consensus WD40 repeat protein [General function pr	97.78
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.74
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.73
KOG1258	577	consensus mRNA processing protein [RNA processing	97.73
KOG1585	308	consensus Protein required for fusion of vesicles	97.69
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.67
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.66
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.64
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.6
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.55
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.55
PF13431	34	TPR_17: Tetratricopeptide repeat	97.51
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.5
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.48
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.45
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.43
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.43
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.42
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.42
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.4
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.4
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.31
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.29
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.23
PF13428	44	TPR_14: Tetratricopeptide repeat	97.21
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.21
PF13428	44	TPR_14: Tetratricopeptide repeat	97.21
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.14
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.13
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.13
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.13
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.08
KOG1258	577	consensus mRNA processing protein [RNA processing	97.08
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.07
PF13431	34	TPR_17: Tetratricopeptide repeat	97.02
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.01
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.95
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.93
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.91
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.91
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.88
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.78
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.73
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.7
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.67
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.65
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.63
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.6
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.6
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.41
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.18
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.17
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.13
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.13
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.12
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.11
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.06
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.05
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.03
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.92
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.7
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.63
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.61
KOG3783	546	consensus Uncharacterized conserved protein [Funct	95.57
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.53
PRK10941	269	hypothetical protein; Provisional	95.48
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.14
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.1
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.05
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.69
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.67
PRK10941	269	hypothetical protein; Provisional	94.61
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.56
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.39
PRK11619	644	lytic murein transglycosylase; Provisional	94.37
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.22
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.19
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.12
KOG1463	411	consensus 26S proteasome regulatory complex, subun	94.09
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.02
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.86
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.71
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.66
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.61
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	93.53
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.52
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.51
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.48
COG5159	421	RPN6 26S proteasome regulatory complex component [	93.27
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.04
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.0
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.87
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.82
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.72
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.68
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.57
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.29
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.21
KOG1310	758	consensus WD40 repeat protein [General function pr	92.15
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.12
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	91.98
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.79
KOG3364	149	consensus Membrane protein involved in organellar	91.54
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.22
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.57
COG4976	287	Predicted methyltransferase (contains TPR repeat)	90.56
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.45
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.31
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.21
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	90.14
KOG2581	493	consensus 26S proteasome regulatory complex, subun	89.99
KOG2422	665	consensus Uncharacterized conserved protein [Funct	89.75
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.73
KOG2422	665	consensus Uncharacterized conserved protein [Funct	89.58
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.48
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.37
KOG3364	149	consensus Membrane protein involved in organellar	89.3
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	89.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	89.22
KOG0529	421	consensus Protein geranylgeranyltransferase type I	88.89
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.78
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	88.74
KOG1463	411	consensus 26S proteasome regulatory complex, subun	88.68
KOG4814	872	consensus Uncharacterized conserved protein [Funct	88.34
COG5159	421	RPN6 26S proteasome regulatory complex component [	88.02
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.96
COG5191	435	Uncharacterized conserved protein, contains HAT (H	87.8
COG2912	269	Uncharacterized conserved protein [Function unknow	87.76
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.11
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	86.77
KOG0529	421	consensus Protein geranylgeranyltransferase type I	86.26
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.9
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	85.83
KOG2581	493	consensus 26S proteasome regulatory complex, subun	85.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.24
COG5191	435	Uncharacterized conserved protein, contains HAT (H	85.05
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	84.96
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.0
COG2912	269	Uncharacterized conserved protein [Function unknow	83.86
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.85
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	83.45
COG4941	415	Predicted RNA polymerase sigma factor containing a	83.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.11
KOG4014	248	consensus Uncharacterized conserved protein (conta	81.89
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.91
KOG4014	248	consensus Uncharacterized conserved protein (conta	80.6
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	80.35
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.18

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-42  Score=376.25  Aligned_cols=444  Identities=18%  Similarity=0.199  Sum_probs=367.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 001578           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (1050)
Q Consensus        43 ~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~  121 (1050)
                      ..+.|+.|+|.+|.++-...-..+ .+...+..++..+++..++++....-..|+..+|...++|-.+|.++-..|++++
T Consensus        55 ah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~  134 (966)
T KOG4626|consen   55 AHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD  134 (966)
T ss_pred             HHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence            356899999999999888776666 3333355577778888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccc
Q 001578          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (1050)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  201 (1050)
                      |+..|+.+              +++.|...++..++.+......                                    
T Consensus       135 al~~y~~a--------------iel~p~fida~inla~al~~~~------------------------------------  164 (966)
T KOG4626|consen  135 ALALYRAA--------------IELKPKFIDAYINLAAALVTQG------------------------------------  164 (966)
T ss_pred             HHHHHHHH--------------HhcCchhhHHHhhHHHHHHhcC------------------------------------
Confidence            88888888              4444444444444422111110                                    


Q ss_pred             ccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCc
Q 001578          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (1050)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~  281 (1050)
                                                     .+..                                             
T Consensus       165 -------------------------------~~~~---------------------------------------------  168 (966)
T KOG4626|consen  165 -------------------------------DLEL---------------------------------------------  168 (966)
T ss_pred             -------------------------------CCcc---------------------------------------------
Confidence                                           0000                                             


Q ss_pred             cCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhH
Q 001578          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (1050)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~  361 (1050)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (966)
T KOG4626|consen  169 --------------------------------------------------------------------------------  168 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (1050)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  441 (1050)
                          .--++...+..+|....+...+|..+-..|+..+|..+|.++++..|..+-+|..+|.++..+|+...|+..|++|
T Consensus       169 ----a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA  244 (966)
T KOG4626|consen  169 ----AVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA  244 (966)
T ss_pred             ----cHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence                0013334455666667777788888888899999999999999999988889999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001578          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (1050)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~  521 (1050)
                      +.++|+..++|+++|.+|...+.+++|+.+|.+++.+.|+++.++-++|.+|+.+|..+-|+..|++++++.|..+.++.
T Consensus       245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~  324 (966)
T KOG4626|consen  245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN  324 (966)
T ss_pred             hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 001578          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (1050)
Q Consensus       522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~  601 (1050)
                      ++|.++-..|+..+|..+|.+++.+.|+++++.++||.+|.++|.+++|...|.++++..|+.+.++.++|.+|.++|++
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl  404 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNL  404 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 001578          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC  681 (1050)
Q Consensus       602 ~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  681 (1050)
                      ++|+.+|+.++.+.|..++++.++|..|..+|+...|+++|.+|+.++|...+       ++.+++..+-..|+..+|+.
T Consensus       405 ~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-------AhsNLasi~kDsGni~~AI~  477 (966)
T KOG4626|consen  405 DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-------AHSNLASIYKDSGNIPEAIQ  477 (966)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH-------HHhhHHHHhhccCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999988765       45556666777788999999


Q ss_pred             HHHHhhccCCCCHHHHHhhcCC
Q 001578          682 WFDIDGDIDPLFKEYWCKRLHP  703 (1050)
Q Consensus       682 ~l~~a~~l~p~~~e~w~~r~~~  703 (1050)
                      .|+.++.++|+|++..|++++.
T Consensus       478 sY~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  478 SYRTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             HHHHHHccCCCCchhhhHHHHH
Confidence            9999999999999998887754

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-40  Score=358.98  Aligned_cols=409  Identities=22%  Similarity=0.239  Sum_probs=373.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Q 001578           43 LAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (1050)
Q Consensus        43 ~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~  121 (1050)
                      .+-+|+..++++.+..-..+|+.++ -..+|.|.|+++-..|++++|+..++.+++++|++++||+.+|.|+...|+.+.
T Consensus        89 ~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~  168 (966)
T KOG4626|consen   89 SAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLEL  168 (966)
T ss_pred             hhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcc
Confidence            4668899999999999999999984 446699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccc
Q 001578          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (1050)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  201 (1050)
                      |.+.|..|              ++++|.+..+...+.......                                     
T Consensus       169 a~~~~~~a--------------lqlnP~l~ca~s~lgnLlka~-------------------------------------  197 (966)
T KOG4626|consen  169 AVQCFFEA--------------LQLNPDLYCARSDLGNLLKAE-------------------------------------  197 (966)
T ss_pred             cHHHHHHH--------------HhcCcchhhhhcchhHHHHhh-------------------------------------
Confidence            99999999              555555544433330000000                                     


Q ss_pred             ccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCc
Q 001578          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (1050)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~  281 (1050)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (966)
T KOG4626|consen  198 --------------------------------------------------------------------------------  197 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhH
Q 001578          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (1050)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~  361 (1050)
                                                                                             +.+.+    
T Consensus       198 -----------------------------------------------------------------------Grl~e----  202 (966)
T KOG4626|consen  198 -----------------------------------------------------------------------GRLEE----  202 (966)
T ss_pred             -----------------------------------------------------------------------cccch----
Confidence                                                                                   00000    


Q ss_pred             HHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (1050)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  441 (1050)
                          ..-++.+.+...|.-+-+|..+|..+..+|+...|+..|+++++++|+..++|+++|.+|...+.++.|+.+|.+|
T Consensus       203 ----a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA  278 (966)
T KOG4626|consen  203 ----AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRA  278 (966)
T ss_pred             ----hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence                0124555667777888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001578          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (1050)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~  521 (1050)
                      +.+.|+++.++.++|.+|+.+|..+-|+..|++++++.|+.++++.++|..+-..|+..+|..+|.+++.+.|..+++.+
T Consensus       279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~  358 (966)
T KOG4626|consen  279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN  358 (966)
T ss_pred             HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 001578          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (1050)
Q Consensus       522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~  601 (1050)
                      +||.++..+|.+++|...|.++++..|..+.++.+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+.
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001578          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL  661 (1050)
Q Consensus       602 ~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~  661 (1050)
                      +.|++.|.+|+.++|..++++.+||.+|...|+..+|+..|+.++.+.||.++++.++..
T Consensus       439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh  498 (966)
T KOG4626|consen  439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH  498 (966)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence            999999999999999999999999999999999999999999999999999997655443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=5.7e-35  Score=358.32  Aligned_cols=439  Identities=19%  Similarity=0.197  Sum_probs=346.2

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 001578           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (1050)
Q Consensus        35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~  114 (1050)
                      .+...+..|+.+|..|+|++|+.+|+++|+..|++..|.|+|.||+++|++++|+.+|++||+++|++.++++++|.+|.
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34556688999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCC
Q 001578          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (1050)
Q Consensus       115 ~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  194 (1050)
                      .+|++++|+.+|..+..+.+........+++.... ..+....    ......                        .+.
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~a~~~~----~~~l~~------------------------~~~  256 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-KFAESKA----KEILET------------------------KPE  256 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-HHHHHHH----HHHHhc------------------------CCC
Confidence            99999999999998866654433322222211100 0000000    000000                        000


Q ss_pred             CccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccc
Q 001578          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (1050)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  274 (1050)
                                                      ..+....+..+...+                                 
T Consensus       257 --------------------------------~~~~~~~~~~~~~~~---------------------------------  271 (615)
T TIGR00990       257 --------------------------------NLPSVTFVGNYLQSF---------------------------------  271 (615)
T ss_pred             --------------------------------CCCCHHHHHHHHHHc---------------------------------
Confidence                                            000000000000000                                 


Q ss_pred             cCCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHH
Q 001578          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (1050)
Q Consensus       275 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~  354 (1050)
                               ....                   ..       +                                      
T Consensus       272 ---------~~~~-------------------~~-------~--------------------------------------  278 (615)
T TIGR00990       272 ---------RPKP-------------------RP-------A--------------------------------------  278 (615)
T ss_pred             ---------cCCc-------------------ch-------h--------------------------------------
Confidence                     0000                   00       0                                      


Q ss_pred             HHHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Q 001578          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ---VNEGKYASAISIFDQILKE---DPMYPEALIGRGTARAFQ  428 (1050)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~g~~~~Ai~~~~~al~~---~p~~~~a~~~la~~~~~~  428 (1050)
                                    .+.......+.....++.++...   ...++|++|+..|++++..   .|....++..+|.++..+
T Consensus       279 --------------~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~  344 (615)
T TIGR00990       279 --------------GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK  344 (615)
T ss_pred             --------------hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence                          00000000111111222222222   3457899999999999986   477788999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (1050)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~  508 (1050)
                      |++++|+..|+++++++|....++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k  424 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK  424 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH-
Q 001578          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-  587 (1050)
Q Consensus       509 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~-  587 (1050)
                      ++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|..... 
T Consensus       425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~  504 (615)
T TIGR00990       425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY  504 (615)
T ss_pred             HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998864332 


Q ss_pred             -----HHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          588 -----YHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       588 -----~~~la~~~-~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                           +...+.++ ...|++++|+..+++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus       505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       505 MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence                 22333333 44799999999999999999999999999999999999999999999999999887554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-36  Score=327.00  Aligned_cols=437  Identities=22%  Similarity=0.274  Sum_probs=327.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 001578           33 MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (1050)
Q Consensus        33 ~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~  111 (1050)
                      ...+...+.+||++|+.|+|++||.+|+.||+++|+ |..|.|||.||..+|+|++.+++|++||+++|++++|++|++.
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS  191 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            445666778999999999999999999999999977 8999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhc
Q 001578          112 AFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSEN  191 (1050)
Q Consensus       112 ~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (1050)
                      ++..+|++++|+.+..-.- +.-+-.......+.-..+...++..+.     .                           
T Consensus       192 A~E~lg~~~eal~D~tv~c-i~~~F~n~s~~~~~eR~Lkk~a~~ka~-----e---------------------------  238 (606)
T KOG0547|consen  192 AHEQLGKFDEALFDVTVLC-ILEGFQNASIEPMAERVLKKQAMKKAK-----E---------------------------  238 (606)
T ss_pred             HHHhhccHHHHHHhhhHHH-HhhhcccchhHHHHHHHHHHHHHHHHH-----H---------------------------
Confidence            9999999999997765441 100000000000000001110111010     0                           


Q ss_pred             CCCCccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccc
Q 001578          192 HNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS  271 (1050)
Q Consensus       192 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (1050)
                                                 .+...+..-+|...++..+...|+.....                        
T Consensus       239 ---------------------------~~k~nr~p~lPS~~fi~syf~sF~~~~~~------------------------  267 (606)
T KOG0547|consen  239 ---------------------------KLKENRPPVLPSATFIASYFGSFHADPKP------------------------  267 (606)
T ss_pred             ---------------------------hhcccCCCCCCcHHHHHHHHhhccccccc------------------------
Confidence                                       00001111122222222222122111000                        


Q ss_pred             ccccCCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhh
Q 001578          272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFK  351 (1050)
Q Consensus       272 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~  351 (1050)
                                                                                   ....+...           
T Consensus       268 -------------------------------------------------------------~~~~~~~k-----------  275 (606)
T KOG0547|consen  268 -------------------------------------------------------------LFDNKSDK-----------  275 (606)
T ss_pred             -------------------------------------------------------------cccCCCcc-----------
Confidence                                                                         00000000           


Q ss_pred             hHHHHHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCC---------H
Q 001578          352 WDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG---KYASAISIFDQILKED----PMY---------P  415 (1050)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g---~~~~Ai~~~~~al~~~----p~~---------~  415 (1050)
                                                   .+....-+...+..+   .|..|...+.+.....    ..+         +
T Consensus       276 -----------------------------sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A  326 (606)
T KOG0547|consen  276 -----------------------------SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA  326 (606)
T ss_pred             -----------------------------chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence                                         011111111111222   4555555555443211    111         5


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (1050)
Q Consensus       416 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~  495 (1050)
                      .++...|..++..|++-.|...|+.++.++|.+...|..+|.+|....+.++....|.++..++|.++++|+.+|.+++-
T Consensus       327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl  406 (606)
T KOG0547|consen  327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL  406 (606)
T ss_pred             HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence            67888899999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001578          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ  575 (1050)
Q Consensus       496 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~  575 (1050)
                      ++++++|+..|++++.++|++..++..++.+.+++++++++...|+.+.+..|+.++++...|.++..+++|++|++.|.
T Consensus       407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCC------CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          576 QVLYIDKR------FSKAYHLRGLLLHG-LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       576 ~al~~~p~------~~~~~~~la~~~~~-~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      +++.+.|.      ++..+...|.+..+ .+++..|+..+++|++++|....++..+|.+..++|+.++|+++|++++.+
T Consensus       487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999987      55556655555433 589999999999999999999999999999999999999999999999988


Q ss_pred             cCCCHH
Q 001578          649 ELDSME  654 (1050)
Q Consensus       649 ~p~~~~  654 (1050)
                      .....+
T Consensus       567 Art~~E  572 (606)
T KOG0547|consen  567 ARTESE  572 (606)
T ss_pred             HHhHHH
Confidence            655443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.7e-31  Score=337.99  Aligned_cols=539  Identities=17%  Similarity=0.107  Sum_probs=401.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 001578           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (1050)
Q Consensus        41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~  119 (1050)
                      ..+..++..|++++|+..|+++++.+ .++..+..+|.+++..|++++|+..++++++.+|.+..+++.+|.++...|++
T Consensus       130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  209 (899)
T TIGR02917       130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI  209 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH
Confidence            45667788999999999999999988 44566889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHHHHHHH---HHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCc
Q 001578          120 EEALSVWEKGYEHALHQSADLKQFLELEELLT---AAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD  196 (1050)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~---~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  196 (1050)
                      ++|+..|+++++..|..+.....+..+.-...   .+...+     ..+                       .+..+.. 
T Consensus       210 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~-----~~~-----------------------~~~~~~~-  260 (899)
T TIGR02917       210 ELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHA-----DAL-----------------------LKKAPNS-  260 (899)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----HHH-----------------------HHhCCCC-
Confidence            99999999999998887655443332221111   010000     000                       0000000 


Q ss_pred             cccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccC
Q 001578          197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ  276 (1050)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k  276 (1050)
                                                         .... ...+...                  ...++.........+
T Consensus       261 -----------------------------------~~~~-~~~~~~~------------------~~~~~~~~A~~~~~~  286 (899)
T TIGR02917       261 -----------------------------------PLAH-YLKALVD------------------FQKKNYEDARETLQD  286 (899)
T ss_pred             -----------------------------------chHH-HHHHHHH------------------HHhcCHHHHHHHHHH
Confidence                                               0000 0000000                  000000000000000


Q ss_pred             CCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCC-CCCcHHhhhhhhhhhHHH
Q 001578          277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNK-SSDSTESRSKLSFKWDML  355 (1050)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k-~~~~~~~l~~~~~~~~~~  355 (1050)
                      .     ....+.     ........+......           +..+.+..++...+.... .......+.......+..
T Consensus       287 ~-----l~~~~~-----~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~  345 (899)
T TIGR02917       287 A-----LKSAPE-----YLPALLLAGASEYQL-----------GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRV  345 (899)
T ss_pred             H-----HHhCCC-----chhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH
Confidence            0     000000     000000000000001           111111222222211111 111111111111111111


Q ss_pred             HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI  435 (1050)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  435 (1050)
                            ..  ..-.+.......|.++..+..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+
T Consensus       346 ------~~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  417 (899)
T TIGR02917       346 ------DE--AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI  417 (899)
T ss_pred             ------HH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHH
Confidence                  11  1113345566778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578          436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (1050)
Q Consensus       436 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~  515 (1050)
                      ..+.+++...|........++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+.+|+++++.+|.
T Consensus       418 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  497 (899)
T TIGR02917       418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD  497 (899)
T ss_pred             HHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence            99999999999988888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (1050)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~  595 (1050)
                      +..++..+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++
T Consensus       498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  577 (899)
T TIGR02917       498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY  577 (899)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 001578          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASK  675 (1050)
Q Consensus       596 ~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~  675 (1050)
                      ...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.       .++..+.++...++
T Consensus       578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~  650 (899)
T TIGR02917       578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-------ALLLLADAYAVMKN  650 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999998875       45567777788899


Q ss_pred             HHHHHHHHHHhhccCCCCHHHHH
Q 001578          676 INSEFCWFDIDGDIDPLFKEYWC  698 (1050)
Q Consensus       676 ~~~A~~~l~~a~~l~p~~~e~w~  698 (1050)
                      +++|+..|+++...+|++.+.|.
T Consensus       651 ~~~A~~~~~~~~~~~~~~~~~~~  673 (899)
T TIGR02917       651 YAKAITSLKRALELKPDNTEAQI  673 (899)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHH
Confidence            99999999999999999888764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2e-30  Score=334.16  Aligned_cols=309  Identities=18%  Similarity=0.140  Sum_probs=294.2

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (1050)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (1050)
                      +.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  669 (899)
T TIGR02917       590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT  669 (899)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence            34445667888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001578          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (1050)
Q Consensus       450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~  529 (1050)
                      .++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++..
T Consensus       670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~  748 (899)
T TIGR02917       670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLA  748 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988 778889999999


Q ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (1050)
Q Consensus       530 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~  609 (1050)
                      .|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..++
T Consensus       749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~  827 (899)
T TIGR02917       749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE  827 (899)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 88999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (1050)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~  687 (1050)
                      +++...|+++.++..+|.++...|++++|+.+|+++++.+|.++.       .++..+.++...|++++|...|++++
T Consensus       828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA-------IRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999875       55667778888899999999998765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=3.3e-29  Score=326.70  Aligned_cols=97  Identities=16%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHH-------------
Q 001578           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY-------------  106 (1050)
Q Consensus        41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~-------------  106 (1050)
                      .++.-....++++.|...+.+++..+ .++..+..++.++++.|+.++|.+.++++++++|++..++             
T Consensus        33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~  112 (1157)
T PRK11447         33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG  112 (1157)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence            34444568899999999999999999 6677789999999999999999999999999999998763             


Q ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 001578          107 ---ILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (1050)
Q Consensus       107 ---~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~  137 (1050)
                         +.+|.++...|++++|++.|+++++..|...
T Consensus       113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~  146 (1157)
T PRK11447        113 RQALQQARLLATTGRTEEALASYDKLFNGAPPEL  146 (1157)
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCCh
Confidence               6678899999999999999999998877764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2e-29  Score=328.80  Aligned_cols=318  Identities=16%  Similarity=0.071  Sum_probs=274.7

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHH
Q 001578          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--------------ALIGRGTARAFQRELEAA  434 (1050)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~--------------a~~~la~~~~~~g~~~~A  434 (1050)
                      .+.+++...|.++++++.+|.+++..|++++|+.+|+++++.+|++..              ....+|.++...|++++|
T Consensus       291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA  370 (1157)
T PRK11447        291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA  370 (1157)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence            445566778889999999999999999999999999999999887642              123557888899999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH------------------------
Q 001578          435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG------------------------  490 (1050)
Q Consensus       435 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg------------------------  490 (1050)
                      +..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..++                        
T Consensus       371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~  450 (1157)
T PRK11447        371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR  450 (1157)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999999999999999998876655444                        


Q ss_pred             ------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Q 001578          491 ------------------IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (1050)
Q Consensus       491 ------------------~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  552 (1050)
                                        .++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..|+++.
T Consensus       451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence                              34456799999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHH----------------------------------------HhhCCCCHHHHHHHH
Q 001578          553 AWGHLTQFYQDLANSEKALECLQQV----------------------------------------LYIDKRFSKAYHLRG  592 (1050)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~l~~a----------------------------------------l~~~p~~~~~~~~la  592 (1050)
                      +++.++..+...+++++|+..++++                                        +...|.++..+..+|
T Consensus       531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La  610 (1157)
T PRK11447        531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA  610 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence            8888877777777777777665542                                        234677888899999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001578          593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT  672 (1050)
Q Consensus       593 ~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~  672 (1050)
                      .++...|++++|+..|+++++.+|+++.+++.++.+|...|++++|++.|+++++..|+++.       .+...+.++..
T Consensus       611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~-------~~~~la~~~~~  683 (1157)
T PRK11447        611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN-------TQRRVALAWAA  683 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH-------HHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998875       34456777778


Q ss_pred             hcCHHHHHHHHHHhhccCCCC
Q 001578          673 ASKINSEFCWFDIDGDIDPLF  693 (1050)
Q Consensus       673 ~~~~~~A~~~l~~a~~l~p~~  693 (1050)
                      .|++++|...|+++....|..
T Consensus       684 ~g~~~eA~~~~~~al~~~~~~  704 (1157)
T PRK11447        684 LGDTAAAQRTFNRLIPQAKSQ  704 (1157)
T ss_pred             CCCHHHHHHHHHHHhhhCccC
Confidence            899999999999998876543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=4.9e-29  Score=305.90  Aligned_cols=262  Identities=19%  Similarity=0.253  Sum_probs=240.4

Q ss_pred             cCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578          428 QRELEAAISDFTEAIQSN---PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (1050)
Q Consensus       428 ~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~  504 (1050)
                      .+++++|+..|++++...   |....++..+|.++..+|++++|+..|+++++++|.....+..+|.++...|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            368999999999999864   77788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 001578          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (1050)
Q Consensus       505 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~  584 (1050)
                      .|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|++++...|.+
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC------LYLRASC-YHAIGEYREAIKDYDAALDLELDSMEKFV  657 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~------~~~la~~-~~~~g~~~eA~~~~~~al~l~p~~~~~~~  657 (1050)
                      +.++..+|.++..+|++++|+..|++++.+.|+....      +...+.+ +...|++++|+.++++++.++|++..   
T Consensus       467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~---  543 (615)
T TIGR00990       467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI---  543 (615)
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH---
Confidence            9999999999999999999999999999999875332      2333333 34479999999999999999998864   


Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          658 LQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       658 ~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                          ++..+|.++...|++++|+.+|+++.++.+...+.
T Consensus       544 ----a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       544 ----AVATMAQLLLQQGDVDEALKLFERAAELARTEGEL  578 (615)
T ss_pred             ----HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence                55667888889999999999999999998875554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2e-30  Score=284.84  Aligned_cols=475  Identities=18%  Similarity=0.167  Sum_probs=351.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001578           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (1050)
Q Consensus        37 ~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~  115 (1050)
                      ...+.++|.+|+.|+|+.||.+|+.||.++ +|..+|.||..||..+|+|.+|+++..++++++|+++++|.|+|.+++.
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            456789999999999999999999999999 8888899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCC
Q 001578          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (1050)
Q Consensus       116 lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  195 (1050)
                      +|+|++|+..|.++|++.|.+..-...+.+.. ....+.                      -.....+...+.....+..
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~----------------------~~~~~~p~~~~~l~~~p~t  139 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA----------------------DQLFTKPYFHEKLANLPLT  139 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHHh----------------------hhhccCcHHHHHhhcChhh
Confidence            99999999999999655555544444333333 110000                      1223344455555555555


Q ss_pred             ccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccccc
Q 001578          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR  275 (1050)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  275 (1050)
                      +..+.+   +.+..++.....++..++.++.+.+.+....+.. +.+..             ....       .....  
T Consensus       140 ~~~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~-------------~~~~-------~~~~~--  193 (539)
T KOG0548|consen  140 NYSLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDEL-------------LFYA-------SGIEI--  193 (539)
T ss_pred             hhhhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCccc-------------cccc-------ccccc--
Confidence            555555   6777777777777777777766444433333222 11000             0000       00000  


Q ss_pred             CCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHH
Q 001578          276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML  355 (1050)
Q Consensus       276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~  355 (1050)
                           .....++.                                         .   .......   ....      . 
T Consensus       194 -----~~~~~~p~-----------------------------------------~---~~~~~~~---~~~d------~-  214 (539)
T KOG0548|consen  194 -----LASMAEPC-----------------------------------------K---QEHNGFP---IIED------N-  214 (539)
T ss_pred             -----CCCCCCcc-----------------------------------------c---ccCCCCC---ccch------h-
Confidence                 00000000                                         0   0000000   0000      0 


Q ss_pred             HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI  435 (1050)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  435 (1050)
                         .. ...            ....+...-.+|...+...++..|++.|..+++++ .+...+...+.+|+..|.+.+++
T Consensus       215 ---~e-e~~------------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~  277 (539)
T KOG0548|consen  215 ---TE-ERR------------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI  277 (539)
T ss_pred             ---HH-HHH------------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence               00 000            00113445678999999999999999999999999 88899999999999999999999


Q ss_pred             HHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          436 SDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (1050)
Q Consensus       436 ~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~  508 (1050)
                      .....+++......       .+...+|..|...++++.|+.+|++++.....        ..+.......++++.....
T Consensus       278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~  349 (539)
T KOG0548|consen  278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAER  349 (539)
T ss_pred             cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHH
Confidence            99999887654432       23445667788888999999999998776543        5566667778888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 001578          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY  588 (1050)
Q Consensus       509 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~  588 (1050)
                      ..-++|.-...-...|..++..|+|..|+..|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+...+|
T Consensus       350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy  429 (539)
T KOG0548|consen  350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY  429 (539)
T ss_pred             HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence            88888888777778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578          589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (1050)
Q Consensus       589 ~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  644 (1050)
                      ...|.++..+.+|++|++.|+++++.+|++.++.-.+..|+..+.......+.+++
T Consensus       430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            99999999999999999999999999999999888888888876444455555555

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.97  E-value=4.5e-27  Score=287.72  Aligned_cols=301  Identities=14%  Similarity=0.053  Sum_probs=268.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      +.++..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+.+++...|++..++..++ .+.
T Consensus       110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~  188 (656)
T PRK15174        110 PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFL  188 (656)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHH
Confidence            4446677888999999999999999999999999999999999999999999999999999999999998887764 478


Q ss_pred             HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----
Q 001578          461 ALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK----  535 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e----  535 (1050)
                      ..|++++|+..+++++...| ........++.++...|++++|+..+++++..+|+++.++..+|.++...|++++    
T Consensus       189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~  268 (656)
T PRK15174        189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQ  268 (656)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence            89999999999999999876 3444556678899999999999999999999999999999999999999999986    


Q ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (1050)
Q Consensus       536 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~  615 (1050)
                      |+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+
T Consensus       269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-H
Q 001578          616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF-K  694 (1050)
Q Consensus       616 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~-~  694 (1050)
                      |++..++..+|.++...|++++|+..|+++++.+|++..                   ..|++|...|..+++.-+.. +
T Consensus       349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~-------------------~~~~ea~~~~~~~~~~~~~~~~  409 (656)
T PRK15174        349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP-------------------QSFEEGLLALDGQISAVNLPPE  409 (656)
T ss_pred             ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch-------------------hhHHHHHHHHHHHHHhcCCccc
Confidence            999888888899999999999999999999999999754                   34556666666665543332 2


Q ss_pred             H-HHHhhc
Q 001578          695 E-YWCKRL  701 (1050)
Q Consensus       695 e-~w~~r~  701 (1050)
                      . +|.+-+
T Consensus       410 ~~~W~~~~  417 (656)
T PRK15174        410 RLDWAWEV  417 (656)
T ss_pred             hhhHHHHH
Confidence            3 575444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=1.9e-25  Score=278.63  Aligned_cols=238  Identities=14%  Similarity=0.055  Sum_probs=209.8

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001578          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (1050)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~  527 (1050)
                      ++.++..+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..+..+|.++
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHH
Confidence            66677888888876 788889999999999888654 46667777789999999999999987775554 4577889999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 001578          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (1050)
Q Consensus       528 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~  607 (1050)
                      ...|++++|+.+++++++..|.....+..++......|++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999998888877777777889999999999999999996 89999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (1050)
Q Consensus       608 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~  687 (1050)
                      |++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.       +++.+|.++...|++++|+..|++++
T Consensus       632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~-------a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA-------LIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999985       56778888888899999999999999


Q ss_pred             ccCCCCHHH
Q 001578          688 DIDPLFKEY  696 (1050)
Q Consensus       688 ~l~p~~~e~  696 (1050)
                      +++|+...-
T Consensus       705 ~l~P~~a~i  713 (987)
T PRK09782        705 DDIDNQALI  713 (987)
T ss_pred             hcCCCCchh
Confidence            999987544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=4.1e-26  Score=279.23  Aligned_cols=318  Identities=13%  Similarity=0.067  Sum_probs=295.7

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001578          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (1050)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (1050)
                      .+..++...|.++++++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus        64 l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~  143 (656)
T PRK15174         64 LLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN  143 (656)
T ss_pred             HhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 001578          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLAL  527 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~la~~~  527 (1050)
                      ..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+++++..+|. .......++.++
T Consensus       144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l  222 (656)
T PRK15174        144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL  222 (656)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence            999999999999999999999999999999999988887765 478999999999999999998763 344556678899


Q ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 001578          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK----ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK  603 (1050)
Q Consensus       528 ~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e  603 (1050)
                      ...|++++|+..++++++.+|+++.++..+|.++...|++++    |+..|++++..+|+++.++..+|.++...|++++
T Consensus       223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e  302 (656)
T PRK15174        223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEK  302 (656)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999986    8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001578          604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWF  683 (1050)
Q Consensus       604 Ai~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l  683 (1050)
                      |+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|++..       .++..+.++...|++++|+..|
T Consensus       303 A~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~-------~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        303 AIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK-------WNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH-------HHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998753       3344577788899999999999


Q ss_pred             HHhhccCCCCH
Q 001578          684 DIDGDIDPLFK  694 (1050)
Q Consensus       684 ~~a~~l~p~~~  694 (1050)
                      ++++..+|...
T Consensus       376 ~~al~~~P~~~  386 (656)
T PRK15174        376 EHYIQARASHL  386 (656)
T ss_pred             HHHHHhChhhc
Confidence            99999988843

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.8e-25  Score=256.80  Aligned_cols=460  Identities=15%  Similarity=0.085  Sum_probs=368.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc-CCcHH---HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcC
Q 001578           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQD---ICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALG  117 (1050)
Q Consensus        43 ~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~---~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~~g~~~~~lg  117 (1050)
                      .+.+|-+|+|+.+..++..+|... ..+.-   +++.|.+|+.+|+|++|.+.|..+++-+|++ +-+++++|+.|+..|
T Consensus       277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~  356 (1018)
T KOG2002|consen  277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG  356 (1018)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence            356889999999999999999887 33333   8999999999999999999999999999998 889999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHH--hhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCC
Q 001578          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (1050)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~--~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  195 (1050)
                      ++++|...|++.++..|+....++-|-.+........  .+........+                              
T Consensus       357 dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~------------------------------  406 (1018)
T KOG2002|consen  357 DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV------------------------------  406 (1018)
T ss_pred             hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH------------------------------
Confidence            9999999999999888888877776655543331000  00000000000                              


Q ss_pred             ccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccccc
Q 001578          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR  275 (1050)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  275 (1050)
                                                                   .                                  
T Consensus       407 ---------------------------------------------~----------------------------------  407 (1018)
T KOG2002|consen  407 ---------------------------------------------L----------------------------------  407 (1018)
T ss_pred             ---------------------------------------------H----------------------------------
Confidence                                                         0                                  


Q ss_pred             CCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHH
Q 001578          276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML  355 (1050)
Q Consensus       276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~  355 (1050)
                                                                               ............++.+....+..
T Consensus       408 ---------------------------------------------------------~~~~~d~~a~l~laql~e~~d~~  430 (1018)
T KOG2002|consen  408 ---------------------------------------------------------EQTPVDSEAWLELAQLLEQTDPW  430 (1018)
T ss_pred             ---------------------------------------------------------hcccccHHHHHHHHHHHHhcChH
Confidence                                                                     00000011111222222211111


Q ss_pred             HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHH
Q 001578          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMY-----PEALIGRGTAR  425 (1050)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~-----~p~~-----~~a~~~la~~~  425 (1050)
                      .. . ..+......+.  ....+..++.+...|..++..|++..|...|..++..     +++.     ....+++|.++
T Consensus       431 ~s-L-~~~~~A~d~L~--~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~  506 (1018)
T KOG2002|consen  431 AS-L-DAYGNALDILE--SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL  506 (1018)
T ss_pred             HH-H-HHHHHHHHHHH--HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence            11 0 01111110111  2334477999999999999999999999999999876     2222     23589999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (1050)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  505 (1050)
                      ...++++.|.+.|..++...|...+++..+|......++..+|...+..++..+..++.++..+|.+++...++..|.+-
T Consensus       507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~  586 (1018)
T KOG2002|consen  507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK  586 (1018)
T ss_pred             HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999999999998


Q ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHH
Q 001578          506 LSACVKLDK--ENKSAYTYLGLALSS------------IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (1050)
Q Consensus       506 l~~al~~~p--~~~~~~~~la~~~~~------------~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  571 (1050)
                      |...++...  .++.+...||.+++.            .+.+++|++.|.++|..+|.+..+-..+|.++...|++.+|+
T Consensus       587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~  666 (1018)
T KOG2002|consen  587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR  666 (1018)
T ss_pred             HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH
Confidence            887776532  466778888887764            456889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       572 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      .+|.++.+...+++.+|.++|.||..+|+|..|++.|+.++...  .++.+++..||.++.+.|.+.+|.+.+.+|+.+.
T Consensus       667 dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~  746 (1018)
T KOG2002|consen  667 DIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA  746 (1018)
T ss_pred             HHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            99999998887888999999999999999999999999999864  3568999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q 001578          650 LDSMEKFVLQCLAFYQKEIALYT  672 (1050)
Q Consensus       650 p~~~~~~~~~~~~~~~~g~~~~~  672 (1050)
                      |.++...++.+.+..+.+....+
T Consensus       747 p~~~~v~FN~a~v~kkla~s~lr  769 (1018)
T KOG2002|consen  747 PSNTSVKFNLALVLKKLAESILR  769 (1018)
T ss_pred             CccchHHhHHHHHHHHHHHHHHh
Confidence            99999888888888887766544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=3.6e-25  Score=276.09  Aligned_cols=282  Identities=11%  Similarity=-0.034  Sum_probs=254.1

Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001578          402 SIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE  479 (1050)
Q Consensus       402 ~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~  479 (1050)
                      ..+.+++...|.  ++.+++.+|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..+++++...
T Consensus       462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~  539 (987)
T PRK09782        462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD  539 (987)
T ss_pred             HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence            334444455577  89999999999987 899999999999999999764 36667888889999999999999988876


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001578          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (1050)
Q Consensus       480 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~  559 (1050)
                      |.+ ..+..+|.++...|++++|+.+++++++.+|.....+..++......|++++|+..|+++++.+|+ ..++.++|.
T Consensus       540 p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~  617 (987)
T PRK09782        540 MSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARAT  617 (987)
T ss_pred             CCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence            654 557889999999999999999999999999999888888887788889999999999999999997 999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       560 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  639 (1050)
                      ++.+.|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~  697 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ  697 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCH
Q 001578          640 KDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFK  694 (1050)
Q Consensus       640 ~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~  694 (1050)
                      .+|+++++++|++..       ..+..|.......+++.|...+.++..++|.-.
T Consensus       698 ~~l~~Al~l~P~~a~-------i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        698 HYARLVIDDIDNQAL-------ITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HHHHHHHhcCCCCch-------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            999999999999875       555677777788889999999988888877643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.95  E-value=4.9e-25  Score=255.88  Aligned_cols=324  Identities=19%  Similarity=0.175  Sum_probs=227.1

Q ss_pred             hHHHHHHHhhccCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEG----KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE  440 (1050)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g----~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~  440 (1050)
                      ...+++.++....|++.+....+|..|...+    ..+.|..+..++++..|.+..+|..+|.++... +...++.+|..
T Consensus       360 ~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~  438 (1018)
T KOG2002|consen  360 ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGN  438 (1018)
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHH
Confidence            3344555555555555555555555555443    345555555555555555555555555555432 22233555555


Q ss_pred             HHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHH
Q 001578          441 AIQS-----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNS-----ADILHERGIVNFKFKDFNAAVED  505 (1050)
Q Consensus       441 al~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~-----~~~~~~lg~~~~~~g~~~~A~~~  505 (1050)
                      |+.+     .+--++.+.++|..++..|++.+|...|.+++..     +++.     ....+++|.++...++++.|.+.
T Consensus       439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~  518 (1018)
T KOG2002|consen  439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM  518 (1018)
T ss_pred             HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence            5532     1223456666777777777888888888777765     1111     22477788888888888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----------------------
Q 001578          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----------------------  563 (1050)
Q Consensus       506 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~----------------------  563 (1050)
                      |...++.+|....++..+|......+...+|...+..++..+..++.++..+|.++..                      
T Consensus       519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~  598 (1018)
T KOG2002|consen  519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT  598 (1018)
T ss_pred             HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence            8888888888888888888777777788888888888887776666665555533321                      


Q ss_pred             --------------------------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578          564 --------------------------LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (1050)
Q Consensus       564 --------------------------~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~  617 (1050)
                                                .+.+++|+++|.++|..+|.+..+-..+|.++...|++.+|+.+|.++.+.-.+
T Consensus       599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~  678 (1018)
T KOG2002|consen  599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD  678 (1018)
T ss_pred             chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence                                      234578888888888888888888888888998899999999999888887777


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLEL--DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE  695 (1050)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e  695 (1050)
                      ..++|.++|.||..+|+|..|++.|+.++...-  ++.+       ....+|.++|..+.+.+|..++.++..+.|.+.-
T Consensus       679 ~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~-------vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~  751 (1018)
T KOG2002|consen  679 FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE-------VLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS  751 (1018)
T ss_pred             CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence            788999999999999999999999999998754  3343       3334455666667799999999999999998775


Q ss_pred             H
Q 001578          696 Y  696 (1050)
Q Consensus       696 ~  696 (1050)
                      .
T Consensus       752 v  752 (1018)
T KOG2002|consen  752 V  752 (1018)
T ss_pred             H
Confidence            5

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=6.8e-25  Score=274.13  Aligned_cols=397  Identities=13%  Similarity=0.005  Sum_probs=263.6

Q ss_pred             HhcCCHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 001578           47 CSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (1050)
Q Consensus        47 ~~~~~~~~Ai~~y~~ai~~~~~-~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~  125 (1050)
                      .-.|++++|+..|.+++...+. ...+.++|.++...|++.+|+..++++++++|++..+++.+|.++...|++++|+..
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~  105 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK  105 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4689999999999999886644 345899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccccccc
Q 001578          126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR  205 (1050)
Q Consensus       126 ~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  205 (1050)
                      ++++++..|+.                                                                     
T Consensus       106 l~~~l~~~P~~---------------------------------------------------------------------  116 (765)
T PRK10049        106 AKQLVSGAPDK---------------------------------------------------------------------  116 (765)
T ss_pred             HHHHHHhCCCC---------------------------------------------------------------------
Confidence            99884333322                                                                     


Q ss_pred             ccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccCCC
Q 001578          206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN  285 (1050)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~~  285 (1050)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (765)
T PRK10049        117 --------------------------------------------------------------------------------  116 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHHHh
Q 001578          286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN  365 (1050)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~  365 (1050)
                                                                                                      
T Consensus       117 --------------------------------------------------------------------------------  116 (765)
T PRK10049        117 --------------------------------------------------------------------------------  116 (765)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN  445 (1050)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (1050)
                                     +. ++.+|.++...|++++|+..++++++.+|+++.++..+|.++...+..++|+..++++.. .
T Consensus       117 ---------------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~  179 (765)
T PRK10049        117 ---------------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T  179 (765)
T ss_pred             ---------------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence                           33 445566666677777777777777777777777777777777766777777766665554 3


Q ss_pred             CCcH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHH
Q 001578          446 PSAG-----EAWKRRGQARA-----ALGES---VEAIQDLSKALEFEPNSAD-------ILHERGIVNFKFKDFNAAVED  505 (1050)
Q Consensus       446 p~~~-----~~~~~la~~~~-----~~g~~---~eA~~~l~kal~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~  505 (1050)
                      |...     .....+..++.     ..+++   ++|+..++++++..|.++.       +.......+...|++++|+..
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~  259 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE  259 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3320     01111222221     11223   5666666666654332221       111112223455677777777


Q ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578          506 LSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (1050)
Q Consensus       506 l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~  580 (1050)
                      |+++++..+.. ..+...+|.++..+|++++|+..|+++++.+|.+    ......++.++...|++++|+..++++...
T Consensus       260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~  339 (765)
T PRK10049        260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN  339 (765)
T ss_pred             HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence            77766665332 2233335667777777777777777776666544    344555666666777777777777776666


Q ss_pred             CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578          581 DKR---------------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       581 ~p~---------------~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  645 (1050)
                      .|.               ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|++.++++
T Consensus       340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a  419 (765)
T PRK10049        340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA  419 (765)
T ss_pred             CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            542               12355666777777777777777777777777777777777777777777777777777777


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          646 LDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       646 l~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                      +.++|++..       .++.++..+...+++++|...++.++...|+++..
T Consensus       420 l~l~Pd~~~-------l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        420 EVLEPRNIN-------LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HhhCCCChH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            777777664       34445555556667777777777777777776654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.93  E-value=5.8e-23  Score=256.80  Aligned_cols=196  Identities=14%  Similarity=0.006  Sum_probs=147.6

Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH
Q 001578          460 AALGESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYK  534 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~  534 (1050)
                      ...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+..|++++..+|.+    ......++.++...|+++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            344555555555555555543211 122234555556666666666666655555443    234445555556666666


Q ss_pred             HHHHHHHHHHHhCc-------------Cc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 001578          535 KAEEAHLKAIQLDR-------------NF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (1050)
Q Consensus       535 eA~~~l~~al~~~p-------------~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g  599 (1050)
                      +|+..++++....|             ++  ..++..++.++...|++++|+..+++++...|.++.++..+|.++...|
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g  407 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG  407 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            66666666655544             32  4577889999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 001578          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (1050)
Q Consensus       600 ~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  655 (1050)
                      ++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++..
T Consensus       408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999863

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.5e-24  Score=244.31  Aligned_cols=300  Identities=21%  Similarity=0.224  Sum_probs=269.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001578          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (1050)
Q Consensus       387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (1050)
                      .|......-+..+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+-+..|-..+..-.+..++..+.+--
T Consensus       325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v  404 (638)
T KOG1126|consen  325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV  404 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence            33444455577899999999777788888999999999999999999999999999999988777777788888877766


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (1050)
Q Consensus       467 eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  546 (1050)
                      +--.+.+..+..+|+.++.|..+|.+|..+++++.|+++|++|++++|....+|..+|.-+.....++.|..+|+.|+..
T Consensus       405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            66667778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001578          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (1050)
Q Consensus       547 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la  626 (1050)
                      +|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++-..+..|
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 001578          627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF  693 (1050)
Q Consensus       627 ~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~  693 (1050)
                      .++..++++++|+..+++.-++.|++.       .+++..|..+-..|+.+.|+..|.-|.+++|.=
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP~es-------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVPQES-------SVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCcchH-------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            999999999999999999999999886       466667777778889999999998888888863

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.9e-24  Score=229.75  Aligned_cols=311  Identities=25%  Similarity=0.255  Sum_probs=272.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      +..+-..|.-++..|+|++||.+|.++++..|+.+..|.+++-||...|++++.++...++++++|+...++++++.++.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            34456778889999999999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHH------------------HHHhh--------------CC----------------------------
Q 001578          461 ALGESVEAIQDLS------------------KALEF--------------EP----------------------------  480 (1050)
Q Consensus       461 ~~g~~~eA~~~l~------------------kal~~--------------~p----------------------------  480 (1050)
                      .+|++.+|+....                  +.+..              .|                            
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            9999888775431                  11110              00                            


Q ss_pred             ----------------------------------------CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          481 ----------------------------------------NS---------ADILHERGIVNFKFKDFNAAVEDLSACVK  511 (1050)
Q Consensus       481 ----------------------------------------~~---------~~~~~~lg~~~~~~g~~~~A~~~l~~al~  511 (1050)
                                                              .+         +.++...|..++-.|++-.|.+.++.+|.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                                                    00         23445567777888999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 001578          512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR  591 (1050)
Q Consensus       512 ~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l  591 (1050)
                      ++|.+...|..+|.+|....+.++....|.+|..++|+++++|++.|++++-++++++|+.-|++++.++|++..++..+
T Consensus       355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl  434 (606)
T KOG0547|consen  355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL  434 (606)
T ss_pred             cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 001578          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD------SMEKFVLQCLAFYQ  665 (1050)
Q Consensus       592 a~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~------~~~~~~~~~~~~~~  665 (1050)
                      +.+++++++++++...|+.+....|+.++++...|.++..+++|++|++.|++|+++.|.      ++..++..++...+
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q  514 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ  514 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence            999999999999999999999999999999999999999999999999999999999998      55444443333332


Q ss_pred             HHHHHHHhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578          666 KEIALYTASKINSEFCWFDIDGDIDPLFKEYW  697 (1050)
Q Consensus       666 ~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w  697 (1050)
                            ..++++.|..++.+++++||.-....
T Consensus       515 ------wk~d~~~a~~Ll~KA~e~Dpkce~A~  540 (606)
T KOG0547|consen  515 ------WKEDINQAENLLRKAIELDPKCEQAY  540 (606)
T ss_pred             ------hhhhHHHHHHHHHHHHccCchHHHHH
Confidence                  34899999999999999999977654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3.7e-24  Score=241.21  Aligned_cols=284  Identities=18%  Similarity=0.220  Sum_probs=268.1

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (1050)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  450 (1050)
                      ..+-...++..-.+..+|..|++.++|++|.++|+.+-+..|-..+..-....++.++.+--+--.+.+..+..+|+.++
T Consensus       343 ~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPe  422 (638)
T KOG1126|consen  343 EKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPE  422 (638)
T ss_pred             HhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcH
Confidence            33444556667888999999999999999999999999999998888888888888887766655666778899999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (1050)
Q Consensus       451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~  530 (1050)
                      .|..+|.+|..+++++.|+++|++|++++|..+.+|..+|.-+.....+|.|..+|+.|+..+|.+..+|+.+|.+|.++
T Consensus       423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq  502 (638)
T KOG1126|consen  423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ  502 (638)
T ss_pred             HHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (1050)
Q Consensus       531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~  610 (1050)
                      ++++.|+-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..++++++|+..+++
T Consensus       503 ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  503 EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      .-++.|+...+++.+|.+|.++|+.+.|+..|--|.+++|.-.+
T Consensus       583 Lk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  583 LKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            99999999999999999999999999999999999999997654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=3.5e-22  Score=232.45  Aligned_cols=309  Identities=16%  Similarity=0.088  Sum_probs=267.2

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR  455 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  455 (1050)
                      .....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            355667779999999999999999999999999999999999999999999999999999998854332    3578899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Q 001578          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSI  530 (1050)
Q Consensus       456 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~~~~~~  530 (1050)
                      |.+|...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+.     ..+..+|.++...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999887653     3566789999999


Q ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLS  609 (1050)
Q Consensus       531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAi~~l~  609 (1050)
                      |++++|+.+|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..++
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988876 4668889999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh---
Q 001578          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID---  686 (1050)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a---  686 (1050)
                      +++...|+... +..++.++...|++++|+..++++++..|++....     .++.........|+..+++..++..   
T Consensus       274 ~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-----~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        274 RALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-----RLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-----HHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            99999998754 48999999999999999999999999999876422     1122222111234666776666544   


Q ss_pred             -hccCCCCH
Q 001578          687 -GDIDPLFK  694 (1050)
Q Consensus       687 -~~l~p~~~  694 (1050)
                       +..+|+|.
T Consensus       348 ~~~~~p~~~  356 (389)
T PRK11788        348 QLKRKPRYR  356 (389)
T ss_pred             HHhCCCCEE
Confidence             46677755

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=3.2e-22  Score=212.93  Aligned_cols=279  Identities=16%  Similarity=0.178  Sum_probs=254.3

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHH
Q 001578          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKR  454 (1050)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~  454 (1050)
                      +...+.-+..|..++++|+++.|++++.-.-+.+... ..+-.++..+++.+|  ++..|..+...++.++.-++.++.+
T Consensus       416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n  495 (840)
T KOG2003|consen  416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN  495 (840)
T ss_pred             hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence            3345666788899999999999999997766555433 234455666666643  7889999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~  534 (1050)
                      .|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|..+.+..
T Consensus       496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a  575 (840)
T KOG2003|consen  496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA  575 (840)
T ss_pred             CCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence            99999999999999999999999888889999999999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 001578          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (1050)
Q Consensus       535 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~  614 (1050)
                      +|++++.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+....+|..|....-.++|+.+|+++.-+
T Consensus       576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali  655 (840)
T KOG2003|consen  576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI  655 (840)
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578          615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (1050)
Q Consensus       615 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  656 (1050)
                      .|+........+.|+.+.|+|..|...|+..-...|.+.+..
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl  697 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL  697 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence            999999999999999999999999999999999999998743

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.1e-21  Score=213.09  Aligned_cols=278  Identities=17%  Similarity=0.165  Sum_probs=261.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (1050)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (1050)
                      ...+.+.....+..++..++|.+..++++..++.+|-+..++...-.++...|+..+-...-.+..+..|+.+..|+..|
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg  319 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG  319 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence            34678899999999999999999999999999999999888766555999999999888888999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (1050)
Q Consensus       457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA  536 (1050)
                      ..|...|++.+|..+|-++..++|....+|...|..+...|..++|+.+|..|-++.|........+|.-|...+.++-|
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----C---CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLS  609 (1050)
Q Consensus       537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~---~~~~~~~la~~~~~~g~~~eAi~~l~  609 (1050)
                      ..+|.+|+.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+    .   -...+.++|.++.+++.+++|+.+|+
T Consensus       400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999984322    1   23468999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      +++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++.-
T Consensus       480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            999999999999999999999999999999999999999999854

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.90  E-value=1.3e-20  Score=195.46  Aligned_cols=319  Identities=15%  Similarity=0.185  Sum_probs=257.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 001578           41 IELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (1050)
Q Consensus        41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~  119 (1050)
                      ..|+++|..|++..|+..|-.||+.+| +-..++.||.+|+.+|+-..|+.+++++|++.|+..-|.+.+|.+++++|++
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel  122 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL  122 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence            678889999999999999999999994 4566999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccc
Q 001578          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (1050)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  199 (1050)
                      ++|..+|++.+.+.|.+.......           ..+                                          
T Consensus       123 e~A~~DF~~vl~~~~s~~~~~eaq-----------skl------------------------------------------  149 (504)
T KOG0624|consen  123 EQAEADFDQVLQHEPSNGLVLEAQ-----------SKL------------------------------------------  149 (504)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHH-----------HHH------------------------------------------
Confidence            999999999965555432110000           000                                          


Q ss_pred             ccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCC
Q 001578          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (1050)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~  279 (1050)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (504)
T KOG0624|consen  150 --------------------------------------------------------------------------------  149 (504)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhh
Q 001578          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (1050)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~  359 (1050)
                                                                                        ..+..         
T Consensus       150 ------------------------------------------------------------------~~~~e---------  154 (504)
T KOG0624|consen  150 ------------------------------------------------------------------ALIQE---------  154 (504)
T ss_pred             ------------------------------------------------------------------HhHHH---------
Confidence                                                                              00000         


Q ss_pred             hHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001578          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (1050)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~  439 (1050)
                                           ...+..+...++..|++..|+++...+++..|-++..+..++.||...|+...|+..+.
T Consensus       155 ---------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk  213 (504)
T KOG0624|consen  155 ---------------------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLK  213 (504)
T ss_pred             ---------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                                 11223445567788999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHH
Q 001578          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER------------GIVNFKFKDFNAAVEDLS  507 (1050)
Q Consensus       440 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~l~  507 (1050)
                      .+-++..++.+.++.++.+++..|+.+.++...+.+++++|+...++-..            +.-....++|.++++..+
T Consensus       214 ~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge  293 (504)
T KOG0624|consen  214 QASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGE  293 (504)
T ss_pred             HHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999875543221            333455677778888888


Q ss_pred             HHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578          508 ACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (1050)
Q Consensus       508 ~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~  583 (1050)
                      +.++.+|..+.    ....+..|+...|++.+|+..+.+++..+|++..++...|.+|.....|+.|+.-|++|.+.+++
T Consensus       294 ~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  294 KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence            88888777443    33456667777788888888888888888888888888888888888888888888888888777


Q ss_pred             CHHHH
Q 001578          584 FSKAY  588 (1050)
Q Consensus       584 ~~~~~  588 (1050)
                      +..+.
T Consensus       374 n~~~r  378 (504)
T KOG0624|consen  374 NTRAR  378 (504)
T ss_pred             cHHHH
Confidence            65543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.89  E-value=8.3e-19  Score=215.16  Aligned_cols=442  Identities=13%  Similarity=-0.004  Sum_probs=309.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 001578           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (1050)
Q Consensus        37 ~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~-~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~  115 (1050)
                      ...+.++-..+++|+|+.|+..|.++++.+|+.. ...-.+.++...|+.++|+..|++++.-+|....++..+|.+|..
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            3456888889999999999999999999996642 333777888899999999999999994334444444444889999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCC
Q 001578          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKS  195 (1050)
Q Consensus       116 lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~  195 (1050)
                      +|++++|++.|+++++..|+.+..+..+..+.         .      ..                              
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y---------~------~~------------------------------  149 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQ---------A------DA------------------------------  149 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---------h------hc------------------------------
Confidence            99999999999999888887754432110000         0      00                              


Q ss_pred             ccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccccc
Q 001578          196 DICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINR  275 (1050)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  275 (1050)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (822)
T PRK14574        150 --------------------------------------------------------------------------------  149 (822)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHH
Q 001578          276 QSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDML  355 (1050)
Q Consensus       276 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~  355 (1050)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (822)
T PRK14574        150 --------------------------------------------------------------------------------  149 (822)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578          356 KETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI  435 (1050)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~  435 (1050)
                         ...  ......+.++....|..... ..++.++...+++.+|++.++++++.+|++..++..+..++...|-...|.
T Consensus       150 ---~q~--~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        150 ---GRG--GVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             ---CCH--HHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence               000  00001223334455554443 555666666778877999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhCCCcHHHHHHH--HHHHHHc---------C---CHHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHH
Q 001578          436 SDFTEAIQSNPSAGEAWKRR--GQARAAL---------G---ESVEAIQDLSKALEFE---PNS----ADILHERGIVNF  494 (1050)
Q Consensus       436 ~~~~~al~~~p~~~~~~~~l--a~~~~~~---------g---~~~eA~~~l~kal~~~---p~~----~~~~~~lg~~~~  494 (1050)
                      +...+--.........+...  +.-..+.         +   -.+.|+..++..+...   |..    ..+....-.++.
T Consensus       224 ~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~  303 (822)
T PRK14574        224 RLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL  303 (822)
T ss_pred             HHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence            76665322211111111111  1111111         1   2355666667766633   322    223344555667


Q ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHcCCh
Q 001578          495 KFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLEAWGHLTQFYQDLANS  567 (1050)
Q Consensus       495 ~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~  567 (1050)
                      ..+++.+++..|+.+.... +--..+....|..|...++.++|+.+|.+++.-.|      ........|..+|...+++
T Consensus       304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~  383 (822)
T PRK14574        304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL  383 (822)
T ss_pred             HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence            7888888888888776544 22345677788888888888888888888877552      2233346677788888888


Q ss_pred             HHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 001578          568 EKALECLQQVLYIDK---------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (1050)
Q Consensus       568 ~~A~~~l~~al~~~p---------------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~  632 (1050)
                      ++|..++++.....|               +...+...++.++...|++.+|.+.+++.+...|.|+.++..+|.++...
T Consensus       384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R  463 (822)
T PRK14574        384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR  463 (822)
T ss_pred             HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            888888888876433               22456777788888888888888888888888888888888888888888


Q ss_pred             cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          633 GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       633 g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                      |.+.+|...++.+..++|++..       +.+.++.+...++++.+|....+...+..|+.+..
T Consensus       464 g~p~~A~~~~k~a~~l~P~~~~-------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        464 DLPRKAEQELKAVESLAPRSLI-------LERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             CCHHHHHHHHHHHhhhCCccHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            8888888888888888888764       45566777777788888888888888888887654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.88  E-value=1.4e-20  Score=195.04  Aligned_cols=315  Identities=17%  Similarity=0.225  Sum_probs=279.7

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001578          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (1050)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  454 (1050)
                      ...|.++.-++.+|..++..|++.+|+..|..+++.+|++..+++.+|.+|..+|+-..|+..+.+++++.|+...+...
T Consensus        32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEPNSA---DI------------LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~------------~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~  519 (1050)
                      .|.+++.+|++++|...|+.++..+|.+.   ++            +......+...|++..|+++....+++.|-++..
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l  191 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL  191 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence            99999999999999999999999999542   22            2223344556799999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH---------
Q 001578          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL---------  590 (1050)
Q Consensus       520 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~---------  590 (1050)
                      +...+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-.         
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999987543221         


Q ss_pred             ---HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001578          591 ---RGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (1050)
Q Consensus       591 ---la~~~~~~g~~~eAi~~l~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~  663 (1050)
                         -+......++|.++++..++.++.+|..+.    ....+..|+..-|++-+|+....++++++|++.+       ++
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~-------~l  344 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ-------VL  344 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH-------HH
Confidence               134455678999999999999999998544    4445778899999999999999999999999875       56


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          664 YQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       664 ~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                      ..++.++.....|+.|+..|+++.+.++.+...
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~  377 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRA  377 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence            677788888889999999999999999998876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=4.7e-20  Score=214.60  Aligned_cols=274  Identities=19%  Similarity=0.121  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 001578          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERG  490 (1050)
Q Consensus       415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~~~lg  490 (1050)
                      ....+.+|..+...|++++|+..|.++++.+|++..++..+|.++...|++++|+..+++++...+..    ..++..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            44566778899999999999999999999999999999999999999999999999999998864332    35788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----HHHHHHHHHHHHcC
Q 001578          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-----EAWGHLTQFYQDLA  565 (1050)
Q Consensus       491 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~-----~~~~~la~~~~~~g  565 (1050)
                      .+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|...     ..+..+|.++...|
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  194 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG  194 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999887653     35678899999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDA  644 (1050)
Q Consensus       566 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~  644 (1050)
                      ++++|+.+|+++++..|+...++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|...+++
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  274 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR  274 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998876 46788999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       645 al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                      +++..|+...        +...+..+...+++++|+..|..+++..|+...+
T Consensus       275 ~~~~~p~~~~--------~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~  318 (389)
T PRK11788        275 ALEEYPGADL--------LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF  318 (389)
T ss_pred             HHHhCCCchH--------HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence            9999997632        2556777888899999999999999999987755

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=2.7e-19  Score=190.85  Aligned_cols=264  Identities=18%  Similarity=0.152  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGIV  492 (1050)
Q Consensus       416 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g--~~~eA~~~l~kal~~~p~~~~~~~~lg~~  492 (1050)
                      +.-...+-.+++.|+++.|++.+.-.-..+... ..+-.++..+++.+|  ++..|..+...++.++.-++.++.+.|.+
T Consensus       420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~  499 (840)
T KOG2003|consen  420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI  499 (840)
T ss_pred             hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence            344667888999999999999887655444332 334455666666543  78999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHH
Q 001578          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (1050)
Q Consensus       493 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  572 (1050)
                      .+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       573 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      ++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+....||..|....-.++|+.+|+++.-+.|+.
T Consensus       580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~  659 (840)
T KOG2003|consen  580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ  659 (840)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 001578          653 MEKFVLQCLAFYQKEIALYTASKINSEFCWFDID  686 (1050)
Q Consensus       653 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a  686 (1050)
                      ..       .....+.|+.+.|+|.+|+..|+..
T Consensus       660 ~k-------wqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  660 SK-------WQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             HH-------HHHHHHHHHHhcccHHHHHHHHHHH
Confidence            53       2334566777889999999988533

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=4.8e-20  Score=198.77  Aligned_cols=309  Identities=15%  Similarity=0.076  Sum_probs=272.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (1050)
                      .-.-+.++.++......++++.-++..... .|++...-...|.+.+.+.++++|+..|+...+.+|-..+-......++
T Consensus       227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L  306 (559)
T KOG1155|consen  227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL  306 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence            334455666777777899999999998887 8888888899999999999999999999999999998877777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  539 (1050)
                      +-.++-.+---+.+.+..++.-.++....+|+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..
T Consensus       307 Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  307 YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence            77777666666667778888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q 001578          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (1050)
Q Consensus       540 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~  619 (1050)
                      |++|++++|.+..+|+.+|++|.-++-..=|+-+|++|+...|.++..|..+|.||.++++.++|+++|.+++.....+.
T Consensus       387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLE-------LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL  692 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~  692 (1050)
                      .++..+|.+|.++++..+|..+|++.++..       |+-..       +...++.-....+++++|-.+...+...++.
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k-------a~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e  539 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK-------ARLFLAEYFKKMKDFDEASYYATLVLKGETE  539 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH-------HHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence            999999999999999999999999999843       22221       2222555566778999999988888777666


Q ss_pred             CHHH
Q 001578          693 FKEY  696 (1050)
Q Consensus       693 ~~e~  696 (1050)
                      -.+.
T Consensus       540 ~eea  543 (559)
T KOG1155|consen  540 CEEA  543 (559)
T ss_pred             HHHH
Confidence            5554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.7e-20  Score=204.37  Aligned_cols=319  Identities=21%  Similarity=0.277  Sum_probs=226.7

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (1050)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (1050)
                      +...+..+|.+.-.+..+..++...|+|++|++--.+..+++|..+..|..+|.++.-+|+|++|+..|.+.|+.+|++.
T Consensus        25 ~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~  104 (539)
T KOG0548|consen   25 FTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK  104 (539)
T ss_pred             HHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH
Confidence            34444555555556666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhhCCCC-----------------------
Q 001578          450 EAWKRRGQARAALGE------------------------SVEAIQDLSKALEFEPNS-----------------------  482 (1050)
Q Consensus       450 ~~~~~la~~~~~~g~------------------------~~eA~~~l~kal~~~p~~-----------------------  482 (1050)
                      ..+..++.++.....                        .+.+.....+.+..+|.+                       
T Consensus       105 ~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~  184 (539)
T KOG0548|consen  105 QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL  184 (539)
T ss_pred             HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc
Confidence            665555555421100                        000000000000000000                       


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001578          483 ---------------------------------------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (1050)
Q Consensus       483 ---------------------------------------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l  523 (1050)
                                                             +.....+|...+...++..|++.|..++.++ .+...+.+.
T Consensus       185 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~  263 (539)
T KOG0548|consen  185 LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNI  263 (539)
T ss_pred             cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHH
Confidence                                                   1123455666667777777888888888887 777777778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--------------
Q 001578          524 GLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--------------  582 (1050)
Q Consensus       524 a~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--------------  582 (1050)
                      +.+|+..|.+.+.+.....+++.....       ..+...+|..|...++++.|+.+|++++....              
T Consensus       264 aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~  343 (539)
T KOG0548|consen  264 AAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKA  343 (539)
T ss_pred             HHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence            888888888887777777777665443       22334466678888999999999999876432              


Q ss_pred             ------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 001578          583 ------------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       583 ------------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  650 (1050)
                                  .-..-....|..++..|+|..|+.+|.+++..+|+++.+|.++|.||..+|.+..|+...+++++++|
T Consensus       344 ~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p  423 (539)
T KOG0548|consen  344 LKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP  423 (539)
T ss_pred             HHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence                        22233456699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       651 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                      +..       .+|+++|.+++...+|+.|+..|..+++++|...++
T Consensus       424 ~~~-------kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  424 NFI-------KAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             hHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            876       478888999999999999999999999999999998

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=6e-20  Score=202.97  Aligned_cols=258  Identities=18%  Similarity=0.210  Sum_probs=238.3

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (1050)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  450 (1050)
                      ..+...+|.+...+...--++...|+..+-..+-.+..+.+|+.+-.|+..|..|+..|++.+|..+|.++..++|....
T Consensus       268 ~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp  347 (611)
T KOG1173|consen  268 EELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP  347 (611)
T ss_pred             HHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH
Confidence            55567778777777555559999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (1050)
Q Consensus       451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~  530 (1050)
                      +|...|..+...|+.++|+.+|..|-++.|........+|.-|...++++-|..+|.+|+.+.|.++-.+..+|.+.+..
T Consensus       348 aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~  427 (611)
T KOG1173|consen  348 AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY  427 (611)
T ss_pred             HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcC-------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Q 001578          531 GEYKKAEEAHLKAIQLDRN-------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK  603 (1050)
Q Consensus       531 g~~~eA~~~l~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~e  603 (1050)
                      +.|.+|..+|+.++..-+.       -...+.+||.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.
T Consensus       428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~  507 (611)
T KOG1173|consen  428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK  507 (611)
T ss_pred             hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence            9999999999999954322       245688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHH
Q 001578          604 AIKDLSSGLGIDPSNIECLYLRASC  628 (1050)
Q Consensus       604 Ai~~l~~al~~~p~~~~~~~~la~~  628 (1050)
                      |+.+|.+++.+.|++..+--.|+.+
T Consensus       508 Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  508 AIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHH
Confidence            9999999999999987666555533

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=6.8e-20  Score=197.59  Aligned_cols=275  Identities=18%  Similarity=0.175  Sum_probs=255.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (1050)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (1050)
                      .|.+...-...|.+.+.+.++++|+..|+.+.+.+|...+-+-....+++-..+-.+-.-..+.+..++.-.++....+|
T Consensus       258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa  337 (559)
T KOG1155|consen  258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA  337 (559)
T ss_pred             CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence            67778888889999999999999999999999999998888888888888777766666666778888888889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (1050)
Q Consensus       457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA  536 (1050)
                      ..|...++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+..+|+.+|.+|..++...=|
T Consensus       338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya  417 (559)
T KOG1155|consen  338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA  417 (559)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---
Q 001578          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG---  613 (1050)
Q Consensus       537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~---  613 (1050)
                      +-+|++|++..|++...|..||.+|.++++.++|+++|.+++........++..+|.+|.++++.++|..+|++.++   
T Consensus       418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~  497 (559)
T KOG1155|consen  418 LYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE  497 (559)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999998   


Q ss_pred             ----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          614 ----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       614 ----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                          ..|+...+..-||.-+.+.+++++|-.+...++.-++.
T Consensus       498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e  539 (559)
T KOG1155|consen  498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE  539 (559)
T ss_pred             hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence                45656678888999999999999999999998887544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.87  E-value=3.9e-18  Score=190.03  Aligned_cols=323  Identities=16%  Similarity=0.093  Sum_probs=292.7

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (1050)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (1050)
                      .+.-..++.-+..+...+.++-|+..|..+++.+|..-..|...+..-...|..++-..++++++...|.....|...+.
T Consensus       513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ak  592 (913)
T KOG0495|consen  513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAK  592 (913)
T ss_pred             chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence            34456788889999999999999999999999999999999998888888899999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (1050)
Q Consensus       458 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  537 (1050)
                      .+...|+...|...+.++++.+|++.++++....+.....+++.|..+|.++....|. ..+|+.-+.+...++..++|+
T Consensus       593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~  671 (913)
T KOG0495|consen  593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEAL  671 (913)
T ss_pred             HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887664 567888888888999999999


Q ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (1050)
Q Consensus       538 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~  617 (1050)
                      .+++++++..|+....|..+|+++.++++.+.|...|...+...|..+..|..++.+-...|+.-.|...++++.-.+|.
T Consensus       672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk  751 (913)
T KOG0495|consen  672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK  751 (913)
T ss_pred             HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH-----------------------HHHHHHHHHHHHhc
Q 001578          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC-----------------------LAFYQKEIALYTAS  674 (1050)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~-----------------------~~~~~~g~~~~~~~  674 (1050)
                      +...|......-.+.|+.+.|.....+|++-.|++...|....                       ..+...+..++...
T Consensus       752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~  831 (913)
T KOG0495|consen  752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEK  831 (913)
T ss_pred             cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998866543211                       23455577788899


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578          675 KINSEFCWFDIDGDIDPLFKEYWCKRL  701 (1050)
Q Consensus       675 ~~~~A~~~l~~a~~l~p~~~e~w~~r~  701 (1050)
                      +++.|..+|.++...+|++-+.|++-+
T Consensus       832 k~~kar~Wf~Ravk~d~d~GD~wa~fy  858 (913)
T KOG0495|consen  832 KIEKAREWFERAVKKDPDNGDAWAWFY  858 (913)
T ss_pred             HHHHHHHHHHHHHccCCccchHHHHHH
Confidence            999999999999999999999997654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.85  E-value=5e-18  Score=197.16  Aligned_cols=299  Identities=15%  Similarity=0.128  Sum_probs=236.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHH
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKR  454 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~  454 (1050)
                      +.+.|..++....++|++.+|+-+|.++++.+|.+....+..+.+|.+.|++..|...|.++++..|..     .+.-..
T Consensus       206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~  285 (895)
T KOG2076|consen  206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR  285 (895)
T ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence            357788899999999999999999999999999999999999999999999999999999999999932     123345


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKL--DKE---------------  515 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~--~p~---------------  515 (1050)
                      .+..+...++-+.|++.++.++....  ...+-+..++.+++....++.|+.........  .++               
T Consensus       286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~  365 (895)
T KOG2076|consen  286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN  365 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence            57788888888999999999998432  23456778899999999999999888766551  011               


Q ss_pred             -----------CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578          516 -----------NKSA-YTYLGLALSSIGEYKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (1050)
Q Consensus       516 -----------~~~~-~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p  582 (1050)
                                 +..+ ...++.+....+...+++..+..--...| +.++.+..++.+|...|++.+|+.+|..+....+
T Consensus       366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~  445 (895)
T KOG2076|consen  366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG  445 (895)
T ss_pred             ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence                       1122 44455555555555555555443322224 4478999999999999999999999999987765


Q ss_pred             -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHH
Q 001578          583 -RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVLQ  659 (1050)
Q Consensus       583 -~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~--~~~~~~~~  659 (1050)
                       ++..+|+.+|.||..+|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.+.....-++.  ...++...
T Consensus       446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e  525 (895)
T KOG2076|consen  446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE  525 (895)
T ss_pred             ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence             446789999999999999999999999999999999999999999999999999999999988733322  23334444


Q ss_pred             HHHHHHHHHHHHHhcCHHH
Q 001578          660 CLAFYQKEIALYTASKINS  678 (1050)
Q Consensus       660 ~~~~~~~g~~~~~~~~~~~  678 (1050)
                      ....+.+...+...|+.++
T Consensus       526 ~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  526 RRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHHHHhhhHHH
Confidence            4455667777777787766

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.84  E-value=7e-21  Score=210.62  Aligned_cols=264  Identities=20%  Similarity=0.225  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      ..+.+|..++..|++++|++++.+.+..  .|+++..+..+|.+....++++.|+..|++++..++..+..+..++.+ .
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            3456799999999999999999776544  488899999999999999999999999999999999999888888888 7


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE  538 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~  538 (1050)
                      ..+++++|+.+++++.+..+ ++..+.....++...++++++...++++....  +.++..+..+|.++...|+.++|+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999988765 67777888889999999999999999987655  6788999999999999999999999


Q ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 001578          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (1050)
Q Consensus       539 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~  618 (1050)
                      .|+++++.+|++..+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999888888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          619 IECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      +..+..+|.++...|+.++|..++++++..
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999999999999998763

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.7e-17  Score=173.85  Aligned_cols=295  Identities=18%  Similarity=0.131  Sum_probs=273.5

Q ss_pred             hhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578          359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF  438 (1050)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~  438 (1050)
                      .+..++..-++.......-+.+...+..+|.+++..|++.+|+-.|+++...+|....+.-..|.++...|+++.-....
T Consensus       210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~  289 (564)
T KOG1174|consen  210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM  289 (564)
T ss_pred             cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence            34445556667777788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001578          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (1050)
Q Consensus       439 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~  518 (1050)
                      ...+........-|+--+...+..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+.|...+
T Consensus       290 ~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~  369 (564)
T KOG1174|consen  290 DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE  369 (564)
T ss_pred             HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence            99999888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH-HHH-HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT-QFY-QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la-~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  596 (1050)
                      .|..+-.+|...|++.+|...-+.++...|.++.++..+| .++ ..-.--++|.+.+++++.+.|....+-..+|.++.
T Consensus       370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~  449 (564)
T KOG1174|consen  370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ  449 (564)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998886 333 33344689999999999999999999999999999


Q ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       597 ~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ..|.+.+++..+++.+...|+ ...+..+|.++...+.+++|+++|..|+.++|++..
T Consensus       450 ~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  450 VEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             hhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            999999999999999998887 478899999999999999999999999999999854

>PRK12370 invasion protein regulator; Provisional

Probab=99.84  E-value=2.6e-18  Score=207.39  Aligned_cols=266  Identities=14%  Similarity=0.003  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCc
Q 001578          381 VDFRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPSA  448 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~---g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~  448 (1050)
                      +..++..|...+..   +++++|+.+|+++++.+|+++.++..+|.++...         +++++|+..++++++++|++
T Consensus       258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~  337 (553)
T PRK12370        258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN  337 (553)
T ss_pred             HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC
Confidence            33456667655543   3567899999999999999998888888877644         33788888888888888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  528 (1050)
                      +.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~  417 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY  417 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888777667777777


Q ss_pred             HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 001578          529 SIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~  607 (1050)
                      ..|++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|....+...++..|...|+  +|...
T Consensus       418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~  495 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPT  495 (553)
T ss_pred             hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHH
Confidence            7888888888888888775 67788888888888888888888888888887778777788888888887773  67777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       608 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      +++.++.......-....+.+|.-.|+.+.|... +++.+..
T Consensus       496 l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        496 IREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            7766654333332333377777778887777776 6665543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.83  E-value=6.5e-18  Score=196.25  Aligned_cols=300  Identities=22%  Similarity=0.234  Sum_probs=237.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      ...++..|..++..|++++|..++.++++.+|.++.+|+.+|.+|.++|+.++|....-.|-.++|.+.+.|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            56778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHH
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKK  535 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~~~~~~g~~~e  535 (1050)
                      .+|++.+|.-+|.+|++.+|.+....+..+.+|.+.|+...|...|.+++...|...     ......+..+...++-+.
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999999999999999999999999999988321     223344666777777788


Q ss_pred             HHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------------------
Q 001578          536 AEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLY----------------------------------  579 (1050)
Q Consensus       536 A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~----------------------------------  579 (1050)
                      |++.++.++...  ....+.+..++.++.....++.|.........                                  
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence            888888887732  22234445566666666666666555444322                                  


Q ss_pred             ---------------------------hC--C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 001578          580 ---------------------------ID--K-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-NIECLYLRASC  628 (1050)
Q Consensus       580 ---------------------------~~--p-~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~-~~~~~~~la~~  628 (1050)
                                                 .+  + +.+..+..++.+|...|++.+|+.+|..+....+. +..+|+.+|.|
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence                                       01  1 23456778888888888888888888888776553 35688888888


Q ss_pred             HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578          629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (1050)
Q Consensus       629 ~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~  687 (1050)
                      |..+|.+++|+++|++++.+.|++.++.+.       ++..+..+|+.++|...+....
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~-------Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILAPDNLDARIT-------LASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCchhhhhh-------HHHHHHhcCCHHHHHHHHhccc
Confidence            888888888888888888888888875544       3444555678888888776554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=1.4e-16  Score=195.70  Aligned_cols=397  Identities=11%  Similarity=-0.019  Sum_probs=307.0

Q ss_pred             HhcCCHHHHHHHHHHHHhccCCcHHHH--HHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 001578           47 CSLRNWSKAIRILDSLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALS  124 (1050)
Q Consensus        47 ~~~~~~~~Ai~~y~~ai~~~~~~~~~~--nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~  124 (1050)
                      ...|++++|+.++++++... +...+.  ..|.+|..+|++++|+..++++++.+|++..+++.++.++...++.++|++
T Consensus        79 ~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574         79 GWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             HHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            46799999999999999322 233334  447799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCccccccccc
Q 001578          125 VWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQS  204 (1050)
Q Consensus       125 ~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  204 (1050)
                      .++++....|..              ... ..+  .....                                        
T Consensus       158 ~l~~l~~~dp~~--------------~~~-l~l--ayL~~----------------------------------------  180 (822)
T PRK14574        158 QATELAERDPTV--------------QNY-MTL--SYLNR----------------------------------------  180 (822)
T ss_pred             HHHHhcccCcch--------------HHH-HHH--HHHHH----------------------------------------
Confidence            999995444431              100 000  00000                                        


Q ss_pred             cccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccCC
Q 001578          205 RDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDIC  284 (1050)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~  284 (1050)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (822)
T PRK14574        181 --------------------------------------------------------------------------------  180 (822)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHHH
Q 001578          285 NGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKR  364 (1050)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~  364 (1050)
                                                                                                ......
T Consensus       181 --------------------------------------------------------------------------~~~~~~  186 (822)
T PRK14574        181 --------------------------------------------------------------------------ATDRNY  186 (822)
T ss_pred             --------------------------------------------------------------------------hcchHH
Confidence                                                                                      000000


Q ss_pred             hHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHc---------C---C
Q 001578          365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL--IGRGTARAFQ---------R---E  430 (1050)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~--~~la~~~~~~---------g---~  430 (1050)
                      .....+.++....|.+.+++..+...+...|-...|.+...+--.........+  ...+.-..+.         .   -
T Consensus       187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~  266 (822)
T PRK14574        187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI  266 (822)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            012245666788999999999999999999999999977665332221111111  1111111111         1   2


Q ss_pred             HHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHH
Q 001578          431 LEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAA  502 (1050)
Q Consensus       431 ~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~lg~~~~~~g~~~~A  502 (1050)
                      .+.|+..++..+...+..+       .+....-.++...|++.+++..|+.+.... |--..+....|..|+..+++++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence            4567778888887443322       234455667778899999999999887654 22355788899999999999999


Q ss_pred             HHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------------CcHHHHHHHHHHH
Q 001578          503 VEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NFLEAWGHLTQFY  561 (1050)
Q Consensus       503 ~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p---------------~~~~~~~~la~~~  561 (1050)
                      +.+|+.++.-.|      ........|..++...+++++|..++++..+..|               +...+...++.++
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            999999988653      2334457788999999999999999999988544               3367788899999


Q ss_pred             HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 001578          562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD  641 (1050)
Q Consensus       562 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  641 (1050)
                      ...|++.+|.+.+++.+...|.+..++..+|.++...|.+.+|...++.+..++|++..+...+|.++..+|++.+|...
T Consensus       427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~  506 (822)
T PRK14574        427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL  506 (822)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCHHH
Q 001578          642 YDAALDLELDSMEK  655 (1050)
Q Consensus       642 ~~~al~l~p~~~~~  655 (1050)
                      .+.+++..|+++..
T Consensus       507 ~~~l~~~~Pe~~~~  520 (822)
T PRK14574        507 TDDVISRSPEDIPS  520 (822)
T ss_pred             HHHHHhhCCCchhH
Confidence            99999999999863

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.82  E-value=1.3e-15  Score=170.11  Aligned_cols=316  Identities=15%  Similarity=0.088  Sum_probs=175.5

Q ss_pred             HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001578          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (1050)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (1050)
                      ++....|.....++..+..+...|+...|..++.++++.+|++.+.++..-.+.....+++.|..+|.++....|. ..+
T Consensus       575 kav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv  653 (913)
T KOG0495|consen  575 KAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERV  653 (913)
T ss_pred             HHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chh
Confidence            3334444444444444544445555555555555555555555555544444444445555555555554443332 234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001578          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (1050)
Q Consensus       452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g  531 (1050)
                      |+.-+.....+++.++|+.+++++++..|+...+|..+|+++...++.+.|.+.|...++..|.....|..++.+-...|
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            44444444444555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (1050)
Q Consensus       532 ~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a  611 (1050)
                      ..-.|...++++.-.+|.+...|.....+-.+.|+.+.|...+.+|++..|.+...|..-..+.-.-++-..++..+++ 
T Consensus       734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-  812 (913)
T KOG0495|consen  734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-  812 (913)
T ss_pred             chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-
Confidence            5555555555555555555555554444455555555555555555555554444444333333333333333332222 


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC
Q 001578          612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP  691 (1050)
Q Consensus       612 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p  691 (1050)
                         ...++.++...|.++....++++|.+.|.+++..+|++.++|......+       ...|.-+.-...|++...-+|
T Consensus       813 ---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe-------l~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  813 ---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE-------LRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             ---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH-------HHhCCHHHHHHHHHHHhccCC
Confidence               3445667888999999999999999999999999999999765332222       234556666778888888999


Q ss_pred             CCHHHHHh
Q 001578          692 LFKEYWCK  699 (1050)
Q Consensus       692 ~~~e~w~~  699 (1050)
                      .+-+.|+.
T Consensus       883 ~hG~~W~a  890 (913)
T KOG0495|consen  883 THGELWQA  890 (913)
T ss_pred             CCCcHHHH
Confidence            99999953

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.5e-17  Score=171.88  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=196.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (1050)
                      ..+|.+|+..|-+.+|...++..++..| .++.+..++.+|....+...|+..|...++..|.+...+...|+++..+++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            5678888888888888888888887765 477788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (1050)
Q Consensus       465 ~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al  544 (1050)
                      +++|.++|+.+++.+|.+.++...+|.-|+.-++++-|+.+|++.++..-.+++.+.++|.|++..++++-++..|++++
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence            88888888888888888888877788888888888888888888888888888888888888888888888888888887


Q ss_pred             HhCcC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578          545 QLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (1050)
Q Consensus       545 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~  621 (1050)
                      ....+   -.++|+++|.+....|++..|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..|-...|+-.+.
T Consensus       386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence            76442   267788888888888888888888888888888888888888888888888888888888888888877666


Q ss_pred             HHHHHHH
Q 001578          622 LYLRASC  628 (1050)
Q Consensus       622 ~~~la~~  628 (1050)
                      .++++.+
T Consensus       466 ~~Nl~~~  472 (478)
T KOG1129|consen  466 TTNLQFM  472 (478)
T ss_pred             ccceeEE
Confidence            6665543

>PRK12370 invasion protein regulator; Provisional

Probab=99.81  E-value=1.6e-17  Score=200.66  Aligned_cols=229  Identities=15%  Similarity=0.113  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHH
Q 001578          418 LIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADI  485 (1050)
Q Consensus       418 ~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~l~kal~~~p~~~~~  485 (1050)
                      ++..|..+...   +.+++|+..|+++++++|+++.++..+|.++...         +++++|+..++++++++|+++.+
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a  340 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA  340 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence            34445443332   4568999999999999999999999999987744         34899999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Q 001578          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (1050)
Q Consensus       486 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g  565 (1050)
                      +..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|
T Consensus       341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999888777777788899


Q ss_pred             ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578          566 NSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (1050)
Q Consensus       566 ~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  644 (1050)
                      ++++|+..+++++... |+++.++..+|.++..+|++++|+..+.+.....|....+...++..|...|+  +|...+++
T Consensus       421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~  498 (553)
T PRK12370        421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIRE  498 (553)
T ss_pred             CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence            9999999999999875 78899999999999999999999999999999999988999999999998885  67776666


Q ss_pred             HHHh
Q 001578          645 ALDL  648 (1050)
Q Consensus       645 al~l  648 (1050)
                      .++.
T Consensus       499 ll~~  502 (553)
T PRK12370        499 FLES  502 (553)
T ss_pred             HHHH
Confidence            6554

>TIGR00540 hemY_coli hemY protein

Probab=99.81  E-value=5.7e-17  Score=188.77  Aligned_cols=300  Identities=14%  Similarity=0.025  Sum_probs=255.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQAR  459 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~  459 (1050)
                      .......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            445678899999999999999999999999999888899999999999999999999999999999885 5666679999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 001578          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT----YLGLALSSIGEYKK  535 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~----~la~~~~~~g~~~e  535 (1050)
                      ...|+++.|...+++.++..|+++.++..++.++...|++++|++.+.+..+....++..+.    ....-+...+..++
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~  243 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE  243 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999988655443322    22222244455556


Q ss_pred             HHHHHHHHHHhCc----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHCCCHHHHHHHHH
Q 001578          536 AEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY--HLRGLLLHGLGQHKKAIKDLS  609 (1050)
Q Consensus       536 A~~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~eAi~~l~  609 (1050)
                      +...+.++....|    +++.++..++..+...|++++|...++++++..|++....  ..........++.+.+++.++
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            6678888888777    5899999999999999999999999999999999887532  223333445688999999999


Q ss_pred             HHHhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578          610 SGLGIDPSNI--ECLYLRASCYHAIGEYREAIKDYD--AALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI  685 (1050)
Q Consensus       610 ~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~--~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~  685 (1050)
                      ++++..|+++  ..+..+|.++...|++++|.++|+  .+++..|++..        +...|..+...|+.++|..++++
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--------~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--------LAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999  889999999999999999999999  68888887653        33568888899999999999987


Q ss_pred             hhc
Q 001578          686 DGD  688 (1050)
Q Consensus       686 a~~  688 (1050)
                      ++.
T Consensus       396 ~l~  398 (409)
T TIGR00540       396 SLG  398 (409)
T ss_pred             HHH
Confidence            644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.80  E-value=1.5e-16  Score=182.05  Aligned_cols=287  Identities=16%  Similarity=0.129  Sum_probs=246.5

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578          368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (1050)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p  446 (1050)
                      ..+++....+|.++.+.+.++..|..+++.+.|..+.+++++. ..+++.+|..+|.++-..+++.+|+...+.++...|
T Consensus       465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~  544 (799)
T KOG4162|consen  465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG  544 (799)
T ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence            3566777889999999999999999999999999999999999 456789999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 001578          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---------DILHERGIVNFKFKDFNAAVEDLSACVKL-----  512 (1050)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~l~~al~~-----  512 (1050)
                      ++.........+-...++.++|+..+...+.+-....         ......+.+....++..+|+..++++..+     
T Consensus       545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~  624 (799)
T KOG4162|consen  545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL  624 (799)
T ss_pred             hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence            9887777777777778999999999888877643222         22223333344445666666666655432     


Q ss_pred             ----------------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHH
Q 001578          513 ----------------DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (1050)
Q Consensus       513 ----------------~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  571 (1050)
                                      .|+.     ...|...+..+...+..++|..++.++-.++|..+..|+..|.++...|+..+|.
T Consensus       625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~  704 (799)
T KOG4162|consen  625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAK  704 (799)
T ss_pred             hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence                            1111     2456678888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       572 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~--~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      +.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++|.++++|+.+|.++.++|+.++|.++|..|++++
T Consensus       705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999888888  9999999999999999999999999999999999999999999


Q ss_pred             CCCHH
Q 001578          650 LDSME  654 (1050)
Q Consensus       650 p~~~~  654 (1050)
                      +.+|-
T Consensus       785 ~S~PV  789 (799)
T KOG4162|consen  785 ESNPV  789 (799)
T ss_pred             cCCCc
Confidence            98874

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.80  E-value=2.2e-19  Score=198.73  Aligned_cols=268  Identities=21%  Similarity=0.202  Sum_probs=121.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001578          410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (1050)
Q Consensus       410 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~  487 (1050)
                      ..|. . ..+.+|.+++..|++++|++.+.+.+..  .|++...|..+|.+....++++.|+..|++++..++.++..+.
T Consensus         5 ~~~~-~-~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~   82 (280)
T PF13429_consen    5 FGPS-E-EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE   82 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-c-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455 2 3346799999999999999999766544  4889999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcC
Q 001578          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLA  565 (1050)
Q Consensus       488 ~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~~~~la~~~~~~g  565 (1050)
                      .++.+ ...+++++|+.++.++.+..+ ++..+..+..++...++++++...+.++....  +.++..+..+|.++.+.|
T Consensus        83 ~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G  160 (280)
T PF13429_consen   83 RLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG  160 (280)
T ss_dssp             -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred             ccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence            88888 799999999999999988764 46667778888999999999999999987655  677899999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       566 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  645 (1050)
                      +.++|+.+|++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|+++
T Consensus       161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~  240 (280)
T PF13429_consen  161 DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA  240 (280)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence            99999999999999999999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578          646 LDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD  688 (1050)
Q Consensus       646 l~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~  688 (1050)
                      +..+|+++.       .....+.++...|+.++|...+.++..
T Consensus       241 ~~~~p~d~~-------~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  241 LKLNPDDPL-------WLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHSTT-HH-------HHHHHHHHHT-----------------
T ss_pred             ccccccccc-------ccccccccccccccccccccccccccc
Confidence            999999986       445566777778899999988876643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=9e-18  Score=179.20  Aligned_cols=368  Identities=18%  Similarity=0.196  Sum_probs=273.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001578           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (1050)
Q Consensus        35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~  113 (1050)
                      .+...+.+++.+++...|..|+..|+.||... .+...|.|||.++..+++|++|.-+++..+.++|...+++.+.++|+
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH  127 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence            45566788999999999999999999999999 55666899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCC
Q 001578          114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN  193 (1050)
Q Consensus       114 ~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1050)
                      ..+++..+|...|+..   .+     .           .+.+.+     ..+                            
T Consensus       128 ~a~~~~i~A~~~~~~~---~~-----~-----------~~anal-----~~~----------------------------  155 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSK---QA-----Y-----------KAANAL-----PTL----------------------------  155 (486)
T ss_pred             hhhHHHHHHHHHhhhh---hh-----h-----------HHhhhh-----hhh----------------------------
Confidence            9999999999877633   00     0           000111     000                            


Q ss_pred             CCccccccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCccccccccccc
Q 001578          194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI  273 (1050)
Q Consensus       194 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  273 (1050)
                                                            .   ......                                
T Consensus       156 --------------------------------------~---~~~~s~--------------------------------  162 (486)
T KOG0550|consen  156 --------------------------------------E---KLAPSH--------------------------------  162 (486)
T ss_pred             --------------------------------------h---cccccc--------------------------------
Confidence                                                  0   000000                                


Q ss_pred             ccCCCCCccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhH
Q 001578          274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWD  353 (1050)
Q Consensus       274 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~  353 (1050)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (486)
T KOG0550|consen  163 --------------------------------------------------------------------------------  162 (486)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhhHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001578          354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA  433 (1050)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~  433 (1050)
                                           ...|.-..+.+..+.++...|++++|+..--.++++++.+.++++..|.+++..++.+.
T Consensus       163 ---------------------s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k  221 (486)
T KOG0550|consen  163 ---------------------SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK  221 (486)
T ss_pred             ---------------------cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence                                 00011234455678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Q 001578          434 AISDFTEAIQSNPSAGE------------AWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK  497 (1050)
Q Consensus       434 A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~~~lg~~~~~~g  497 (1050)
                      |+..|++++.++|++..            .+...|.-.++.|++..|.++|..+|.++|++    +.+|.+++.+..++|
T Consensus       222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg  301 (486)
T KOG0550|consen  222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG  301 (486)
T ss_pred             HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence            99999999999998743            46667888889999999999999999999965    567889999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (1050)
Q Consensus       498 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a  577 (1050)
                      +..+|+...+.++.+++....++...|.++..++++++|.+.|+++++...+ ......+..+          ...++++
T Consensus       302 rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A----------~~aLkkS  370 (486)
T KOG0550|consen  302 RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA----------QLALKKS  370 (486)
T ss_pred             CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH----------HHHHHHh
Confidence            9999999999999999999999999999999999999999999999988665 3333322222          1112211


Q ss_pred             HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------HH-HHHHHHHHHHHccCHHHHHHHHHHH
Q 001578          578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IE-CLYLRASCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       578 l~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-------~~-~~~~la~~~~~~g~~~eA~~~~~~a  645 (1050)
                      -.     ..-|..+|....... .+--..+-..+|...|+-       .+ -....|..|..++++.++.+++.-.
T Consensus       371 kR-----kd~ykilGi~~~as~-~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  371 KR-----KDWYKILGISRNASD-DEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             hh-----hhHHHHhhhhhhccc-chhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            11     111222333222211 111111222234334432       12 3456889999999999988876544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.1e-17  Score=172.78  Aligned_cols=304  Identities=17%  Similarity=0.101  Sum_probs=275.0

Q ss_pred             HHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578          386 SRGIAQVNEGK--YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       386 ~~a~~~~~~g~--~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      ..+.+....++  +.-+..++-......|++...+..+|.+++..|++++|+..|+++.-++|......-..|.++...|
T Consensus       201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg  280 (564)
T KOG1174|consen  201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG  280 (564)
T ss_pred             HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence            33444444444  4555556666667789999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (1050)
Q Consensus       464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  543 (1050)
                      +++.-..+....+........-|+.-+..++..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.|
T Consensus       281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            99999999999999888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG-LLLH-GLGQHKKAIKDLSSGLGIDPSNIEC  621 (1050)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la-~~~~-~~g~~~eAi~~l~~al~~~p~~~~~  621 (1050)
                      ..+.|...+.|..+..+|...|++.+|....+.++...|.++.++..+| .++. .-.--++|...+++++.+.|....+
T Consensus       361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A  440 (564)
T KOG1174|consen  361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA  440 (564)
T ss_pred             HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence            9999999999999999999999999999999999999999999999987 4443 3344588999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW  697 (1050)
Q Consensus       622 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w  697 (1050)
                      -..+|.++...|.+++++..+++++...||.        ..+..+|..+.....+.+|+.+|.+++.+||..+...
T Consensus       441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHhhcccc--------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            9999999999999999999999999999987        3456678888888999999999999999999998663

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.79  E-value=4.4e-16  Score=180.41  Aligned_cols=297  Identities=12%  Similarity=0.033  Sum_probs=242.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-GTARAFQRELEAAISDFTEAIQSNPSAGEA-WKRRGQA  458 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~  458 (1050)
                      ....+..|...+..|+++.|.+.+.+..+..+ ++..++.+ +.+....|+++.|..++.++.+.+|+...+ ....+.+
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            45567888899999999999988887655433 34444444 666699999999999999999999988544 3455999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHc
Q 001578          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT--------YLGLALSSI  530 (1050)
Q Consensus       459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~--------~la~~~~~~  530 (1050)
                      +...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+..+.++....        .+.......
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999888766543222        222222233


Q ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (1050)
Q Consensus       531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~  610 (1050)
                      .+.+.....++......|+++.+...++..+...|+.++|...++++++. +.++.....++.+  ..++.++++..+++
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~  319 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ  319 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence            34445555555555566778999999999999999999999999999995 4456555555554  44999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 001578          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI  689 (1050)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l  689 (1050)
                      .++.+|+++..+..+|.++...|++++|.++|+++++..|++..        +...+.++...|+.++|..+|.+++.+
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--------~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--------YAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999998753        445777888899999999999888764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.78  E-value=5.8e-17  Score=179.90  Aligned_cols=231  Identities=17%  Similarity=0.157  Sum_probs=140.7

Q ss_pred             CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578          395 GKYASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (1050)
Q Consensus       395 g~~~~Ai~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  470 (1050)
                      +..+.++..+.+++...|    ..+..++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            456667777777775333    2255677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 001578          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (1050)
Q Consensus       471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  550 (1050)
                      .|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+.+++...+..
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            7777777777777777777777777777777777777777777776532111 122344566777777776655433221


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHH
Q 001578          551 LEAWGHLTQFYQDLANSEKALECLQQVL-------YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIECL  622 (1050)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~l~~al-------~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p-~~~~~~  622 (1050)
                      .  +. .+.++...|+..++ ..++.+.       ++.|...++|+++|.++..+|++++|+.+|+++++.+| +..+..
T Consensus       199 ~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~  274 (296)
T PRK11189        199 Q--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR  274 (296)
T ss_pred             c--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence            1  11 23444445554332 1222222       33444555666666666666666666666666666664 444444


Q ss_pred             HHHHHHHH
Q 001578          623 YLRASCYH  630 (1050)
Q Consensus       623 ~~la~~~~  630 (1050)
                      +.+..+..
T Consensus       275 ~~~~e~~~  282 (296)
T PRK11189        275 YALLELAL  282 (296)
T ss_pred             HHHHHHHH
Confidence            44444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=7.1e-18  Score=187.90  Aligned_cols=233  Identities=19%  Similarity=0.247  Sum_probs=162.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (1050)
                      +..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            56778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHH
Q 001578          465 SVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKK  535 (1050)
Q Consensus       465 ~~eA~~~l~kal~~~p~~~~~~~~-------lg~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~e  535 (1050)
                      -.+|+.++.+-+...|........       ...-......+..-.+.|..+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            888888888887776543221110       00000111122333455555555556  566677777777777777777


Q ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (1050)
Q Consensus       536 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~  615 (1050)
                      |+.+|+.||...|++...|..||-.+..-.+.++|+..|++|+++.|....+++++|..++.+|.|++|+++|-.||.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            77777777777777777777777777666677777777777777777777777777777777777777777777776664


Q ss_pred             CC
Q 001578          616 PS  617 (1050)
Q Consensus       616 p~  617 (1050)
                      +.
T Consensus       529 ~k  530 (579)
T KOG1125|consen  529 RK  530 (579)
T ss_pred             hc
Confidence            43

>TIGR00540 hemY_coli hemY protein

Probab=99.77  E-value=4.6e-16  Score=181.23  Aligned_cols=277  Identities=14%  Similarity=0.027  Sum_probs=235.3

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (1050)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (1050)
                      .+.....|.....++..|..+...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++++.+..|+++
T Consensus       108 ~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~  187 (409)
T TIGR00540       108 AKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK  187 (409)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            444556677778888999999999999999999999999999875 5667779999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHH
Q 001578          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAYT  521 (1050)
Q Consensus       450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~----~lg~~~~~~g~~~~A~~~l~~al~~~p----~~~~~~~  521 (1050)
                      .++..++.++...|++++|.+.+.+..+....++..+.    ....-+...+..+++.+.+..+....|    +++..+.
T Consensus       188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~  267 (409)
T TIGR00540       188 EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKI  267 (409)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence            99999999999999999999999999987554443321    222222444555666778888888877    5899999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHH
Q 001578          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLHG  597 (1050)
Q Consensus       522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~la~~~~~  597 (1050)
                      .++..+...|++++|+..++++++..|++....  ..........++.+.+++.++++++..|+++  ..+..+|.++.+
T Consensus       268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~  347 (409)
T TIGR00540       268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK  347 (409)
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            999999999999999999999999999987532  2233333446888999999999999999999  889999999999


Q ss_pred             CCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          598 LGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       598 ~g~~~eAi~~l~--~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      .|++++|.++|+  .+++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus       348 ~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       348 HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999  57778887655 669999999999999999999998765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=3.5e-17  Score=169.15  Aligned_cols=264  Identities=14%  Similarity=0.069  Sum_probs=240.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578          390 AQVNEGKYASAISIFDQILKED---PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (1050)
Q Consensus       390 ~~~~~g~~~~Ai~~~~~al~~~---p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (1050)
                      +++..++...|-......++.+   |.       +...-..+|.||+.+|-+.+|...++.+++..| .++.+..++.+|
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY  266 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY  266 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence            4556677777777776666543   21       122335799999999999999999999998775 578888999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  539 (1050)
                      .+..+...|+..+.+.++..|.+...+...+.++..++++++|.++|+.+++.+|.+.++...+|.-|+.-++.+-|+.+
T Consensus       267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry  346 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY  346 (478)
T ss_pred             HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 001578          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (1050)
Q Consensus       540 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p  616 (1050)
                      |++.++..-.+++.+.++|.+.+..++++-++..|++++....   .-+++|+++|.+....|++.-|..+|+-++..++
T Consensus       347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA  426 (478)
T ss_pred             HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence            9999999999999999999999999999999999999998754   3368999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ++.+++.++|.+-.+.|+.++|..++..|-...|+-.+
T Consensus       427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE  464 (478)
T ss_pred             chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence            99999999999999999999999999999999998765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.77  E-value=1.4e-16  Score=176.93  Aligned_cols=223  Identities=22%  Similarity=0.246  Sum_probs=183.9

Q ss_pred             cCCHHHHHHHHHHHHHhCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578          428 QRELEAAISDFTEAIQSNP---S-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV  503 (1050)
Q Consensus       428 ~g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~  503 (1050)
                      .+..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3567889999999996444   3 36789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (1050)
Q Consensus       504 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~  583 (1050)
                      ..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.++....+.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            99999999999999999999999999999999999999999999998742222 22345678999999999887755432


Q ss_pred             CHHHHHHHHHHHHHCCCHHHH--HHHHHH----HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHH
Q 001578          584 FSKAYHLRGLLLHGLGQHKKA--IKDLSS----GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSME  654 (1050)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~eA--i~~l~~----al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p-~~~~  654 (1050)
                      ..  +. .+.++...|+..++  +..+.+    ..++.|...++|+++|.++..+|++++|+.+|+++++++| +..+
T Consensus       198 ~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e  272 (296)
T PRK11189        198 EQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE  272 (296)
T ss_pred             cc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence            22  22 35555666766443  333332    2355666778999999999999999999999999999997 4444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.77  E-value=2.9e-15  Score=171.74  Aligned_cols=292  Identities=20%  Similarity=0.189  Sum_probs=251.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSK  474 (1050)
Q Consensus       396 ~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~k  474 (1050)
                      ...+++..++++++.+|+|+.+.+.++.-|..+++.+.|.....++++.+ .+++.+|..+|.++...+++.+|+...+.
T Consensus       459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999994 56789999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT---------YLGLALSSIGEYKKAEEAHLKAIQ  545 (1050)
Q Consensus       475 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~---------~la~~~~~~g~~~eA~~~l~~al~  545 (1050)
                      ++...|+|.........+-...++.++|+..+...+.+-.....+-.         ..+......++..+|+..+.++..
T Consensus       539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~  618 (799)
T KOG4162|consen  539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS  618 (799)
T ss_pred             HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence            99999998888888888888899999999999888877543322222         222233334455556655555443


Q ss_pred             hC-------------c--------Cc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 001578          546 LD-------------R--------NF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (1050)
Q Consensus       546 ~~-------------p--------~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g  599 (1050)
                      .-             |        +.     ...|...+..+...+..++|..++.++-.++|..+..|+..|.++...|
T Consensus       619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~  698 (799)
T KOG4162|consen  619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG  698 (799)
T ss_pred             HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH
Confidence            21             1        11     3567788899999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHH
Q 001578          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK--DYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKIN  677 (1050)
Q Consensus       600 ~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~  677 (1050)
                      +..+|.+.|..|+.++|+++.....+|.++.+.|+..-|..  .+..+++++|.+++       +||..|..+...|+..
T Consensus       699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e-------aW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE-------AWYYLGEVFKKLGDSK  771 (799)
T ss_pred             hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHccchH
Confidence            99999999999999999999999999999999999888888  99999999999997       6777888888999999


Q ss_pred             HHHHHHHHhhccCCCCH
Q 001578          678 SEFCWFDIDGDIDPLFK  694 (1050)
Q Consensus       678 ~A~~~l~~a~~l~p~~~  694 (1050)
                      .|..+|.-+.++++..+
T Consensus       772 ~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  772 QAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHHHhhccCCC
Confidence            99999999999887755

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=1.5e-17  Score=185.21  Aligned_cols=233  Identities=18%  Similarity=0.249  Sum_probs=208.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 001578          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (1050)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~  498 (1050)
                      +..|..+++.|++.+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHcCChHH
Q 001578          499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK  569 (1050)
Q Consensus       499 ~~~A~~~l~~al~~~p~~~~~~~~-------la~~~~~~g~~~eA~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~  569 (1050)
                      -.+|+.++.+-+...|........       ...-......+..-.+.|..+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887754321110       00001111223445667777777788  789999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       570 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      |+++|+.||...|++...|..||-.+..-.+..+|+..|++|+++.|....++|++|.++..+|.|++|.++|-.||.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 001578          650 LD  651 (1050)
Q Consensus       650 p~  651 (1050)
                      +.
T Consensus       529 ~k  530 (579)
T KOG1125|consen  529 RK  530 (579)
T ss_pred             hc
Confidence            76

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.76  E-value=3.7e-16  Score=166.78  Aligned_cols=201  Identities=18%  Similarity=0.139  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  528 (1050)
                      ...+..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            34555555555555566666666665555555555555666666666666666666666666666666566666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 001578          529 SIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~  606 (1050)
                      ..|++++|+..+.+++...  +.....+..+|.++...|++++|...+++++..+|.+..++..+|.++...|++++|+.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666665532  33455666677777777777777777777777777766777777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       607 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      .+++++...|.++..+..++.++...|+.++|..+.+.+....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            7777777666666677777777777777777777666665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=4.6e-17  Score=173.84  Aligned_cols=271  Identities=25%  Similarity=0.307  Sum_probs=243.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      +......|..++...+|.+|+..+..+++..|+++..|...+.+++..|++++|....++.+++.|.....+...++++.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            44456678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHH------------hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001578          461 ALGESVEAIQDLSKAL------------EFE------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal------------~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~  522 (1050)
                      .+++..+|.+.++..-            .+.      |.-..+....+.++...|++++|...--..+++++.+.++++.
T Consensus       129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v  208 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV  208 (486)
T ss_pred             hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence            9998888876665221            011      1123455667899999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcH------------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HH
Q 001578          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL------------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SK  586 (1050)
Q Consensus       523 la~~~~~~g~~~eA~~~l~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~  586 (1050)
                      .|.+++..++.+.|+..|++++.++|++.            ..+..-|.-.++.|++..|.++|..+|.++|++    +.
T Consensus       209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak  288 (486)
T KOG0550|consen  209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK  288 (486)
T ss_pred             cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence            99999999999999999999999999873            445677888999999999999999999999975    56


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       587 ~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      .|.++|.+...+|+..+|+...+.++.++|....++...|.|+..++++++|++.|++++++..+
T Consensus       289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            78999999999999999999999999999999999999999999999999999999999999876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.75  E-value=5.4e-16  Score=165.49  Aligned_cols=201  Identities=21%  Similarity=0.241  Sum_probs=144.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (1050)
                      .+..++.+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            36677777888888888888888888888878887777788888888888888888888888887777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001578          460 AALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  537 (1050)
                      ...|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++..+|.+..++..+|.++...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777777643  3345566666777777777777777777777766666666666666666666666666


Q ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (1050)
Q Consensus       538 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  580 (1050)
                      ..+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            6666666666666666666666666666666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.75  E-value=1.1e-13  Score=174.95  Aligned_cols=269  Identities=14%  Similarity=0.021  Sum_probs=160.6

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHH
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKR  454 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~  454 (1050)
                      +...+..+...|.+.|++++|+.+|+...+.. .-+...|..+...+.+.|++++|...|.++...    .| +...|..
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyna  584 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGA  584 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHH
Confidence            45556666666666666666666666665432 123455666666666666666666666666542    22 2345556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 001578          455 RGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGE  532 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~  532 (1050)
                      +...|.+.|++++|.++|+++.+.+ +.+...|..+...|.+.|++++|+..|.+..+.. .-+...+..+...+...|+
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~  664 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD  664 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            6666666666666666666666654 2345566666666666666666666666666542 1124556666666666666


Q ss_pred             HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578          533 YKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~  610 (1050)
                      +++|.+++.++.+.. +.+...+..+...|.+.|++++|..+|++..... ..+...|..+...|.+.|++++|++.|++
T Consensus       665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e  744 (1060)
T PLN03218        665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE  744 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666666666666543 2345566666666666666666666666654321 12345566666666666666666666666


Q ss_pred             HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          611 GLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       611 al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      ..... ..+...+..+...+.+.|++++|.+++.++++..
T Consensus       745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G  784 (1060)
T PLN03218        745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG  784 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            55431 1234455555566666666666666666666543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.75  E-value=4.7e-16  Score=155.28  Aligned_cols=201  Identities=20%  Similarity=0.187  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 001578          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (1050)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g  497 (1050)
                      ...+|.-|+..|++..|...+++|++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++++.|..++.+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001578          498 DFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ  575 (1050)
Q Consensus       498 ~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~  575 (1050)
                      ++++|...|++++..  .+..+..+.++|.|..+.|+++.|..+|+++++++|+.+.....++..++..|+|..|..+++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            444444444444432  122233444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 001578          576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (1050)
Q Consensus       576 ~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~  618 (1050)
                      +.....+-..+.+.....+....|+-+.|-.+=.+.....|..
T Consensus       198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            4444433334444444444444444444444444444444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.74  E-value=1.4e-14  Score=180.95  Aligned_cols=295  Identities=11%  Similarity=-0.033  Sum_probs=248.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQ  457 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  457 (1050)
                      .+...+..+...|.+.|++++|...|+..   .+.+...|..+...|.+.|++++|+..|++..+.. .-+...+..+..
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~  333 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR  333 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            34566777888999999999999999876   34578899999999999999999999999987653 234568889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578          458 ARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (1050)
Q Consensus       458 ~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA  536 (1050)
                      ++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+   .+...|..+...|...|+.++|
T Consensus       334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A  410 (697)
T PLN03081        334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKA  410 (697)
T ss_pred             HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999875 45778899999999999999999999998754   3567899999999999999999


Q ss_pred             HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578          537 EEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (1050)
Q Consensus       537 ~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAi~~l~~al~  613 (1050)
                      ++.|++..+.. ..+...+..+...+...|+.++|..+|+...+..+  .+...|..+..+|.+.|++++|.+.+++. .
T Consensus       411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~  489 (697)
T PLN03081        411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-P  489 (697)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-C
Confidence            99999988753 22466778888899999999999999999986433  23467888999999999999999999875 2


Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD  688 (1050)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~  688 (1050)
                      ..| +..+|..+...+...|+++.|...+++.+++.|++...       |......+...|++++|...++...+
T Consensus       490 ~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~-------y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        490 FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN-------YVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            334 46789999999999999999999999999999988653       34455567778999999999876543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.74  E-value=4.7e-15  Score=171.81  Aligned_cols=265  Identities=13%  Similarity=0.014  Sum_probs=221.5

Q ss_pred             HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001578          381 VDFRLS-RGIAQVNEGKYASAISIFDQILKEDPMYPEA-LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (1050)
Q Consensus       381 ~~~~~~-~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (1050)
                      +..++. .+......|+++.|..+|.++.+.+|+...+ ....+.++...|++++|+..++++.+.+|+++.++..++.+
T Consensus       117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~  196 (398)
T PRK10747        117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA  196 (398)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            444444 4666699999999999999999999987543 34559999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHH--------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578          459 RAALGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (1050)
Q Consensus       459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~--------~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~  530 (1050)
                      |...|++++|++.+.+..+..+.++....        .+........+-+...+.++..-+..|+++.+...++..+...
T Consensus       197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~  276 (398)
T PRK10747        197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC  276 (398)
T ss_pred             HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC
Confidence            99999999999999999987765544222        2122222333445555555555556678999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (1050)
Q Consensus       531 g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~  610 (1050)
                      |+.++|...++++++. +.++.....++.+  ..++.+++++.+++.++.+|+++..+..+|.++...+++++|..+|++
T Consensus       277 g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        277 DDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             CCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999999994 5456555545544  459999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      +++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus       354 al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        354 ALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999985 456689999999999999999999998865

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.74  E-value=9.2e-16  Score=153.19  Aligned_cols=206  Identities=19%  Similarity=0.108  Sum_probs=196.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  528 (1050)
                      ..+...+|.-|+..|++..|...++++++.+|++..++..++.+|...|+.+.|.+.|++++.++|++.+++++.|..+.
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 001578          529 SIGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~  606 (1050)
                      .+|++++|...|++|+..  .+..+..+.++|.|..+.|+++.|..+|+++++++|+.+.....++..++..|+|-.|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999999974  345578999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       607 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ++++.....+-..+.+.....+-...|+-+.|.++=.+.....|...+
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            999999988888999999999999999999999999999999999876

>PLN02789 farnesyltranstransferase

Probab=99.73  E-value=9.2e-16  Score=169.78  Aligned_cols=265  Identities=17%  Similarity=0.142  Sum_probs=164.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIV  492 (1050)
Q Consensus       414 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~p~~~~~~~~lg~~  492 (1050)
                      ...++-.+-.++...+.+++|+..+.++++++|.+..+|..++.++..+| ++++++..+++++..+|++..+|+.++.+
T Consensus        36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~  115 (320)
T PLN02789         36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHH
Confidence            34444444445555666777777777777777777777777777776666 45677777777777777777777777766


Q ss_pred             HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc---CCh
Q 001578          493 NFKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANS  567 (1050)
Q Consensus       493 ~~~~g~~--~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~  567 (1050)
                      +...|+.  ++++.++.++++.+|.+..+|...+.++...|++++|++++.++++.+|.+..+|...+.++...   |.+
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~  195 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL  195 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence            6666653  55666666777777777777777777777777777777777777777777777777666666554   222


Q ss_pred             ----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578          568 ----EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       568 ----~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  639 (1050)
                          ++++.+..+++..+|++..+|..++.++..    +++..+|+..+.+++...|.++.++..++.+|.......   
T Consensus       196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~---  272 (320)
T PLN02789        196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT---  272 (320)
T ss_pred             cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc---
Confidence                355666666666666666666666666655    334455666666666666666666666666665321110   


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578          640 KDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL  701 (1050)
Q Consensus       640 ~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~r~  701 (1050)
                      ..++..++....                    .....++|...++.....||--+.||..|.
T Consensus       273 ~~~~~~~~~~~~--------------------~~~~~~~a~~~~~~l~~~d~ir~~yw~~~~  314 (320)
T PLN02789        273 AEFRDTVDTLAE--------------------ELSDSTLAQAVCSELEVADPMRRNYWAWRK  314 (320)
T ss_pred             hhhhhhhhcccc--------------------ccccHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence            001111110000                    012356777777777789999999997664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.72  E-value=2.6e-15  Score=174.95  Aligned_cols=224  Identities=17%  Similarity=0.111  Sum_probs=191.1

Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001578          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (1050)
Q Consensus       462 ~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~  541 (1050)
                      ..+...|+..|-+++.+++..+.++..+|.+|...-+...|..+|.+|.++++.+..+.-..+..|....++++|.....
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            34588899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHhCcCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q 001578          542 KAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (1050)
Q Consensus       542 ~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~  619 (1050)
                      .+-+..|..  ...|..+|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|+|..|++.|.++..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            777777654  455677999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI  685 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~  685 (1050)
                      ...+-.|.+...+|+|.+|+..+...+...........-++..+.+.+..++..|-..+|...+++
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek  696 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK  696 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999999999999999999988876555444444555555555555444444444333333

>PLN02789 farnesyltranstransferase

Probab=99.72  E-value=1.7e-15  Score=167.70  Aligned_cols=217  Identities=15%  Similarity=0.145  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (1050)
                      .+++-..-.++...+.+++|+..+.+++..+|.+..++..++.++..+| ++++++..++++++.+|++..+|..++.++
T Consensus        37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            3444333445667889999999999999999999999999999999998 689999999999999999999999999999


Q ss_pred             HHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH-
Q 001578          460 AALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY-  533 (1050)
Q Consensus       460 ~~~g~~--~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~-  533 (1050)
                      ...|+.  ++++.+++++++.+|++..+|..++.++...|++++|++++.++++.+|.+..+|+.++.++...   |.+ 
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~  196 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE  196 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence            999874  78899999999999999999999999999999999999999999999999999999999998776   333 


Q ss_pred             ---HHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578          534 ---KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (1050)
Q Consensus       534 ---~eA~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~  597 (1050)
                         ++++.+..+++..+|++..+|..++.++..    +++..+|+..+.+++...|.++.++..++.+|..
T Consensus       197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence               578889999999999999999999999988    4567789999999999999999999999999975

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=8.3e-14  Score=145.65  Aligned_cols=304  Identities=16%  Similarity=0.098  Sum_probs=225.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (1050)
                      -.+.+|.+.+..-.|++|++.|.+++..+|+....-..+|.||+++.-++-+.+.+.-.++..|+.+-+...++...+++
T Consensus       153 dqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  153 DQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL  232 (557)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence            34556667777778999999999999999998888889999999999999999999999999999988887777666654


Q ss_pred             --CCHH----------------HHHHHHH----------HHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          463 --GESV----------------EAIQDLS----------KALEFEP----NSADILHERGIVNFKFKDFNAAVEDLSACV  510 (1050)
Q Consensus       463 --g~~~----------------eA~~~l~----------kal~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~l~~al  510 (1050)
                        |+..                .+..+++          -+++.-|    .-+++..++...|..+++..+|+...+.  
T Consensus       233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd--  310 (557)
T KOG3785|consen  233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD--  310 (557)
T ss_pred             hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh--
Confidence              2221                1222211          1222223    1367888999999999999999988764  


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCc------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 001578          511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ---LDR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (1050)
Q Consensus       511 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~  581 (1050)
                       ++|..+.-+...|.+....|+--...+.++-|-+   +-.      +.......+|.+++-..++++.+.+++..-...
T Consensus       311 -l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF  389 (557)
T KOG3785|consen  311 -LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF  389 (557)
T ss_pred             -cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             6899999999999999998876555444444332   211      223345567778888889999999999888888


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001578          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (1050)
Q Consensus       582 p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~  660 (1050)
                      .++....+++|+++...|+|.+|.+.|-+.-..+ .+.......+|.||...+..+-|...+-+.   + ++.+.+.++ 
T Consensus       390 ~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~-t~~e~fsLL-  464 (557)
T KOG3785|consen  390 TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---N-TPSERFSLL-  464 (557)
T ss_pred             cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---C-CchhHHHHH-
Confidence            8888899999999999999999999998776554 233455667999999999999999877542   2 233433222 


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHHH
Q 001578          661 LAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC  698 (1050)
Q Consensus       661 ~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~  698 (1050)
                         -..+..+|..+.|--|-..|+....+||. +++|.
T Consensus       465 ---qlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe  498 (557)
T KOG3785|consen  465 ---QLIANDCYKANEFYYAAKAFDELEILDPT-PENWE  498 (557)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC
Confidence               22455667777777777778777777877 66774

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.70  E-value=1.7e-14  Score=150.06  Aligned_cols=267  Identities=18%  Similarity=0.161  Sum_probs=240.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQA  458 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~  458 (1050)
                      -|..|.-++-..+.++|+..|..+++.+|...++.+.+|..+...|..+.|+..-+..+. .|+.     ..+...+|.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence            355777788889999999999999999999999999999999999999999998776654 4543     3478899999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCH
Q 001578          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEY  533 (1050)
Q Consensus       459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~  533 (1050)
                      |+..|-++.|...|....+...--..++..+..+|....++++|++..++..++.+..     +..+..++..+....+.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999999988766667899999999999999999999999999998875     35677889999999999


Q ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (1050)
Q Consensus       534 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAi~~l~~al  612 (1050)
                      +.|...+.+|++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +++...+..+|.++|+.++.+..+.++.
T Consensus       197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999976 5788899999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      +..++ +++...++..-....-.+.|..++.+-+...|+-
T Consensus       277 ~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~  315 (389)
T COG2956         277 ETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM  315 (389)
T ss_pred             HccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence            98876 5666777777777888899999999999999975

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.70  E-value=1.9e-12  Score=163.79  Aligned_cols=257  Identities=13%  Similarity=0.033  Sum_probs=139.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCH
Q 001578          388 GIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGES  465 (1050)
Q Consensus       388 a~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~  465 (1050)
                      ...|.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|+..|.......- -+...|..+...|.+.|++
T Consensus       479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~  558 (1060)
T PLN03218        479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV  558 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            3344555566666666665554332 1345555555556666666666666655544321 1244555555556666666


Q ss_pred             HHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578          466 VEAIQDLSKALEF----EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAH  540 (1050)
Q Consensus       466 ~eA~~~l~kal~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l  540 (1050)
                      ++|.+.+.++...    .| +...+..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|+..|
T Consensus       559 deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf  637 (1060)
T PLN03218        559 DRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY  637 (1060)
T ss_pred             HHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            6666666555432    23 34455555555666666666666666555554 234455555555566666666666666


Q ss_pred             HHHHHh--CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Q 001578          541 LKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--D  615 (1050)
Q Consensus       541 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~--~  615 (1050)
                      .+..+.  .|+ ...|..+...|.+.|++++|.++++.+.+.. +.+...|..+...|.+.|++++|++.|++....  .
T Consensus       638 ~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~  716 (1060)
T PLN03218        638 DDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR  716 (1060)
T ss_pred             HHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            555544  222 4455555555556666666666666555432 233455555556666666666666666555432  2


Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578          616 PSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (1050)
Q Consensus       616 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  647 (1050)
                      | +...|..+...|.+.|++++|.+.|++...
T Consensus       717 P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        717 P-TVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            2 244555556666666666666666665543

>PLN03077 Protein ECB2; Provisional

Probab=99.69  E-value=2.9e-13  Score=173.21  Aligned_cols=293  Identities=11%  Similarity=-0.046  Sum_probs=242.5

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (1050)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (1050)
                      ..+...+..+...|.+.|++++|.++|++..+   .+...|..+...|...|+.++|+..|++.....+.+...+..+-.
T Consensus       421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~  497 (857)
T PLN03077        421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS  497 (857)
T ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence            34566777888899999999999999998643   356678889999999999999999999998765556667777778


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578          458 ARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (1050)
Q Consensus       458 ~~~~~g~~~eA~~~l~kal~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA  536 (1050)
                      ++...|+.+.+.+.+..+++..- .+..+...+...|.+.|+.++|...|+..    +.+...|..+...|...|+.++|
T Consensus       498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A  573 (857)
T PLN03077        498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMA  573 (857)
T ss_pred             HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHH
Confidence            88899999999999999887643 34556778889999999999999999886    56788999999999999999999


Q ss_pred             HHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578          537 EEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (1050)
Q Consensus       537 ~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAi~~l~~al  612 (1050)
                      +..|++..+.  .|+ ...+..+...+.+.|+.++|..+|+...+..+  .+...|..+..++.+.|++++|.+.+++. 
T Consensus       574 ~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-  651 (857)
T PLN03077        574 VELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-  651 (857)
T ss_pred             HHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence            9999998874  354 45566666788999999999999999885432  23578999999999999999999999986 


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578          613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (1050)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~  687 (1050)
                      ...|+ ..+|..+-..+...|+.+.|....+++++++|++...+.       ..+..+...|+|++|....+...
T Consensus       652 ~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~-------ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        652 PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI-------LLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH-------HHHHHHHHCCChHHHHHHHHHHH
Confidence            35565 677878877888899999999999999999999986443       44555667799999988876553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.69  E-value=8.6e-14  Score=173.88  Aligned_cols=265  Identities=10%  Similarity=-0.045  Sum_probs=229.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRG  456 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  456 (1050)
                      .+...|..+...|...|++++|+.+|++..+.. .-+...+..+..++...|++++|...+..+++.. +.+..++..+.
T Consensus       288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li  367 (697)
T PLN03081        288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV  367 (697)
T ss_pred             CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence            356778888999999999999999999997643 2346688899999999999999999999999875 55677889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Q 001578          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKK  535 (1050)
Q Consensus       457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~e  535 (1050)
                      ..|.+.|++++|...|++..+   .+...|..+...|.+.|+.++|++.|++..+... -+...+..+...+...|..++
T Consensus       368 ~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~  444 (697)
T PLN03081        368 DLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ  444 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence            999999999999999998754   3667899999999999999999999999887542 246678888889999999999


Q ss_pred             HHHHHHHHHHhCc--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578          536 AEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (1050)
Q Consensus       536 A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~  613 (1050)
                      |..+|+...+..+  .+...|..+..+|.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.+.
T Consensus       445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            9999999986432  23567888999999999999999998864 2233 467799999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      +.|++...|..++.+|...|++++|.+.++...+.
T Consensus       523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999988765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.68  E-value=2e-14  Score=167.72  Aligned_cols=294  Identities=14%  Similarity=0.125  Sum_probs=227.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (1050)
                      .+..+|..+.+.+++..|+..|+.++..+|.+..+|..+|.+|...|.+..|++.|.++..++|.+..+.+..+.+....
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~  643 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN  643 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence            35558889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHH
Q 001578          463 GESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKL-------D-KENKSAYTYLGLAL  527 (1050)
Q Consensus       463 g~~~eA~~~l~kal~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~-------~-p~~~~~~~~la~~~  527 (1050)
                      |+|.+|+..+...+......       ++.+...+..+...|-+.+|..+++++++.       . -++...|..+|.++
T Consensus       644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac  723 (1238)
T KOG1127|consen  644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC  723 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence            99999999999888765433       445555555555566666666666665543       2 22333333333222


Q ss_pred             HH-----------------------cCCH------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--------cCChHHH
Q 001578          528 SS-----------------------IGEY------KKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------LANSEKA  570 (1050)
Q Consensus       528 ~~-----------------------~g~~------~eA~~~l~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A  570 (1050)
                      .-                       .+..      --|.+++-..+.+.. ++..|+++|..|.+        ..+...|
T Consensus       724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~A  802 (1238)
T KOG1127|consen  724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTA  802 (1238)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence            11                       1111      123344444443322 26678899888776        2344589


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 001578          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       571 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  650 (1050)
                      +.++.+++++..++...|..+|.+ ...|++.-|..+|-+.+...|.....|.++|.++.+..+++-|...|.++..++|
T Consensus       803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP  881 (1238)
T KOG1127|consen  803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP  881 (1238)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCc
Confidence            999999999999999999999998 6669999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578          651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI  685 (1050)
Q Consensus       651 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~  685 (1050)
                      .+..       .|...+.+....|+.-+++..|.-
T Consensus       882 ~nl~-------~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  882 LNLV-------QWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hhhH-------HHHHHHHhHHHHHHHHHHHHHHHh
Confidence            9975       445555555666766667666655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.68  E-value=3.4e-16  Score=162.67  Aligned_cols=107  Identities=29%  Similarity=0.409  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 001578           31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK  109 (1050)
Q Consensus        31 ~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~  109 (1050)
                      +....+.+.|.+||++++.++|++|+..|++||+++ .|+++|+|||.+|.++|.++.|+++|+.||.+||.+.++|.|+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            456678899999999999999999999999999999 7888899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 001578          110 GCAFSALGRKEEALSVWEKGYEHALHQS  137 (1050)
Q Consensus       110 g~~~~~lg~~~~A~~~~~~al~~~~~~~  137 (1050)
                      |.+|+.+|++++|++.|++||++.|+..
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999999977777765

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.68  E-value=8.7e-15  Score=168.50  Aligned_cols=251  Identities=18%  Similarity=0.185  Sum_probs=168.2

Q ss_pred             HhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001578          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (1050)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (1050)
                      ......|.-......+|..|..+|+|+.|+..++.+++.--             ...|             ...|.-...
T Consensus       190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~-------------k~~G-------------~~hl~va~~  243 (508)
T KOG1840|consen  190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILE-------------KTSG-------------LKHLVVASM  243 (508)
T ss_pred             hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-------------HccC-------------ccCHHHHHH
Confidence            33445555555666666666666666666666666665500             0000             002222223


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 001578          452 WKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KE  515 (1050)
Q Consensus       452 ~~~la~~~~~~g~~~eA~~~l~kal~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~--------p~  515 (1050)
                      ...+|.+|..++++.+|+..|++++.+        +|.-+.++.+||.+|...|++++|..++++++++.        |.
T Consensus       244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~  323 (508)
T KOG1840|consen  244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE  323 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence            334555555566666666666655554        12224456666666666666666666666666542        22


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q 001578          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID------  581 (1050)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------  581 (1050)
                      -...+.+++.++...+++++|+.++++++++.        +.-+..+.++|.+|..+|++++|.++|++++.+.      
T Consensus       324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~  403 (508)
T KOG1840|consen  324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK  403 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence            34566777788888888888888888877763        2336778889999999999999999999998764      


Q ss_pred             --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          582 --KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       582 --p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                        +.....+..+|..+.+.+++.+|...|.++..+       .|+....+.+||.+|..+|++++|+++.++++..
T Consensus       404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence              223457888999999999999999998888765       3455678899999999999999999999998854

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.66  E-value=3.8e-14  Score=163.28  Aligned_cols=230  Identities=20%  Similarity=0.185  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHH
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKR  454 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  454 (1050)
                      +...|..--..--+..|++.+.+..-. .|.-......+|.+|..++++.+|+..|++|+.+        +|....++.+
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n  288 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN  288 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            333333333333344455554333322 1222233345788888888888888888888765        3334567788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHH
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEP--------NSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----K---ENKS  518 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-----p---~~~~  518 (1050)
                      ||.+|...|++++|..++++++++..        .-+..+.+++.++...+++++|+.++++++++.     +   .-+.
T Consensus       289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~  368 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK  368 (508)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence            88888888888888888888877632        224467778888888888888888888888763     2   2346


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCC
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKR  583 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~  583 (1050)
                      .+.++|.+|...|++++|.++|++|+.+..        .....+.++|..|.+.+++.+|...|.+++.+       .|+
T Consensus       369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~  448 (508)
T KOG1840|consen  369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD  448 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence            778899999999999999999999988742        23567788888899999999898888888765       234


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 001578          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (1050)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~eAi~~l~~al~  613 (1050)
                      ....+.+||.+|..+|++++|+++.++++.
T Consensus       449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            456788999999999999999999888874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.66  E-value=1.3e-13  Score=143.62  Aligned_cols=268  Identities=19%  Similarity=0.204  Sum_probs=227.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 001578          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVN  493 (1050)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~~~~~lg~~~  493 (1050)
                      +..|.-+.-..+.++|++.|...++.+|...++...+|.+|...|..+.|+..-+..+. .|+.     ..+...+|.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence            45666677788999999999999999999999999999999999999999998877665 4543     34788999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcCChH
Q 001578          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQDLANSE  568 (1050)
Q Consensus       494 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~~  568 (1050)
                      ...|-++.|...|........--..++..|..+|....++++|+..-++..++.++.     +..+..++..+....+.+
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d  197 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD  197 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999887666667899999999999999999999999999998865     567889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALD  647 (1050)
Q Consensus       569 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~  647 (1050)
                      .|...+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+. +++...|..||.++|+.++....+.++.+
T Consensus       198 ~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         198 RARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986 67889999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578          648 LELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE  695 (1050)
Q Consensus       648 l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e  695 (1050)
                      ..++..-..     +.++.   .....-.+.|...+..-+...|.-.-
T Consensus       278 ~~~g~~~~l-----~l~~l---ie~~~G~~~Aq~~l~~Ql~r~Pt~~g  317 (389)
T COG2956         278 TNTGADAEL-----MLADL---IELQEGIDAAQAYLTRQLRRKPTMRG  317 (389)
T ss_pred             ccCCccHHH-----HHHHH---HHHhhChHHHHHHHHHHHhhCCcHHH
Confidence            988754321     11111   11223345555555555555665443

>PLN03077 Protein ECB2; Provisional

Probab=99.65  E-value=1.8e-12  Score=165.97  Aligned_cols=87  Identities=11%  Similarity=-0.036  Sum_probs=72.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCH
Q 001578           42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQAYILKGCAFSALGRK  119 (1050)
Q Consensus        42 ~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~~g~~~~~lg~~  119 (1050)
                      -+..+.+.|++++|...|++...  ++...|..+-..|.+.|++++|+..+.+....  .|+ .-.|..+-.++...|+.
T Consensus       228 Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~g~~  304 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELLGDE  304 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCh
Confidence            45667899999999999998643  56677888888999999999999999998875  465 45777777888999999


Q ss_pred             HHHHHHHHHHHh
Q 001578          120 EEALSVWEKGYE  131 (1050)
Q Consensus       120 ~~A~~~~~~al~  131 (1050)
                      +.|.+.+..+.+
T Consensus       305 ~~a~~l~~~~~~  316 (857)
T PLN03077        305 RLGREMHGYVVK  316 (857)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988843

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.64  E-value=3e-12  Score=144.65  Aligned_cols=437  Identities=14%  Similarity=0.099  Sum_probs=315.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Q 001578           41 IELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (1050)
Q Consensus        41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~  119 (1050)
                      .+.-+.|..++|.+.++..+..++..| ....+.-.|..+..+|+-++|...+..++..|+...--+..+|.++....+|
T Consensus        12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y   91 (700)
T KOG1156|consen   12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY   91 (700)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence            355678899999999999999999774 4455888999999999999999999999999999888999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccc
Q 001578          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (1050)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  199 (1050)
                      ++|++.|+.|+.+.|++...+..+..+.......                                              
T Consensus        92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~----------------------------------------------  125 (700)
T KOG1156|consen   92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY----------------------------------------------  125 (700)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence            9999999999777766654443332222221100                                              


Q ss_pred             ccccccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCC
Q 001578          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (1050)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~  279 (1050)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (700)
T KOG1156|consen  126 --------------------------------------------------------------------------------  125 (700)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccCCCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhh
Q 001578          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (1050)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~  359 (1050)
                                                                                                  ..  
T Consensus       126 ----------------------------------------------------------------------------~~--  127 (700)
T KOG1156|consen  126 ----------------------------------------------------------------------------EG--  127 (700)
T ss_pred             ----------------------------------------------------------------------------hh--
Confidence                                                                                        00  


Q ss_pred             hHHHHhHHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCH
Q 001578          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY-----PEALIGRGTARAFQREL  431 (1050)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~---p~~-----~~a~~~la~~~~~~g~~  431 (1050)
                            ....-.......|..-..|+..|..+...|++..|..+.+...+..   |..     ..+...........|.+
T Consensus       128 ------~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~  201 (700)
T KOG1156|consen  128 ------YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL  201 (700)
T ss_pred             ------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence                  0001122355677788899999999999999999999998887654   322     34566777788888998


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 001578          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACV  510 (1050)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~l~~al  510 (1050)
                      ++|++.+..--..--+........|.++..++++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-
T Consensus       202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls  281 (700)
T KOG1156|consen  202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS  281 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            888888776544433445566778999999999999999999999999999988888888776334444455 5555555


Q ss_pred             HhCCCCHHHHHHHHH--------------HH---HHc-------------CCHHHHHHHHHHHH-------HhC------
Q 001578          511 KLDKENKSAYTYLGL--------------AL---SSI-------------GEYKKAEEAHLKAI-------QLD------  547 (1050)
Q Consensus       511 ~~~p~~~~~~~~la~--------------~~---~~~-------------g~~~eA~~~l~~al-------~~~------  547 (1050)
                      +..|.... ...++.              ++   ...             .+.... ..+++.+       .-.      
T Consensus       282 ~~y~r~e~-p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~  359 (700)
T KOG1156|consen  282 EKYPRHEC-PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFL  359 (700)
T ss_pred             hcCccccc-chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcc
Confidence            54443210 000000              00   001             111111 1222222       111      


Q ss_pred             ------cCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Q 001578          548 ------RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (1050)
Q Consensus       548 ------p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~  619 (1050)
                            |..  ...++.++.-+...|+++.|..+++.|+...|...+.+...|.++...|.+++|...+.++-+++-.+.
T Consensus       360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence                  212  244567888899999999999999999999999999999999999999999999999999999987766


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHHHHHhcCHHHHHHHHHHhhcc
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ--KEIALYTASKINSEFCWFDIDGDI  689 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~--~g~~~~~~~~~~~A~~~l~~a~~l  689 (1050)
                      ..-..-|....+.++.++|.+...+.-+..-+-.......--.||.  -|.++++++++.+|+.-|.....+
T Consensus       440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~  511 (700)
T KOG1156|consen  440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH  511 (700)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence            6655788889999999999998877766543211111111122333  478888999999998877554433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.64  E-value=5.8e-13  Score=152.94  Aligned_cols=312  Identities=12%  Similarity=-0.024  Sum_probs=235.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001578          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (1050)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (1050)
                      +|+.+..+..+|..+...|+.+.|...+.++....|.+   .+..+..|.++...|++++|...++++++.+|.+..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            68889999999999999999999999999998877754   566788899999999999999999999999999988776


Q ss_pred             HHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001578          454 RRGQARAALGESV----EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (1050)
Q Consensus       454 ~la~~~~~~g~~~----eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~  529 (1050)
                      . +..+...|++.    .+...+.......|.....+..+|.++...|++++|+..+++++++.|++..++..+|.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            5 55555555444    444444443355667777888999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHCCC
Q 001578          530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYH---LRGLLLHGLGQ  600 (1050)
Q Consensus       530 ~g~~~eA~~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~---~la~~~~~~g~  600 (1050)
                      .|++++|+.++++++...|..+    ..+..+|.++...|++++|+..|++++...|.  ......   .+...+...|.
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  240 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH  240 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence            9999999999999999887432    35668999999999999999999999866652  221111   22222333443


Q ss_pred             HHHHHHH--H-HHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHh
Q 001578          601 HKKAIKD--L-SSGLGIDPS--NIECLYLRASCYHAIGEYREAIKDYDAALDLELD--SMEKFVLQCLAFYQKEIALYTA  673 (1050)
Q Consensus       601 ~~eAi~~--l-~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~--~~~~~~~~~~~~~~~g~~~~~~  673 (1050)
                      ...+...  + .......+.  ........+.++...|+.++|...++......-.  ...............+++++..
T Consensus       241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~  320 (355)
T cd05804         241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE  320 (355)
T ss_pred             CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence            3333222  1 111111121  2233346888889999999999999888765432  0111222334556678889999


Q ss_pred             cCHHHHHHHHHHhhcc
Q 001578          674 SKINSEFCWFDIDGDI  689 (1050)
Q Consensus       674 ~~~~~A~~~l~~a~~l  689 (1050)
                      |+++.|+..+..++.+
T Consensus       321 g~~~~A~~~L~~al~~  336 (355)
T cd05804         321 GNYATALELLGPVRDD  336 (355)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.59  E-value=1.1e-12  Score=147.93  Aligned_cols=317  Identities=19%  Similarity=0.179  Sum_probs=224.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      -..++..+.-.+..++|...+...+.+++..|.+++.+...|..+..+|+-++|..+...++..++...-+|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34566777777788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l  540 (1050)
                      ...+|++|+.+|+.|+.+.|++..++..++.+..++++++-....-.+.++..|.....|..++..+...|++..|...+
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888887777


Q ss_pred             HHHHHhC---cCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578          541 LKAIQLD---RNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (1050)
Q Consensus       541 ~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al  612 (1050)
                      +...+..   |..     .........+..+.|.+++|++.+..--..--+........|.++..++++++|...|...+
T Consensus       167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll  246 (700)
T KOG1156|consen  167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL  246 (700)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence            7666554   221     33444555666677777777766654332222333445566777777778888888888777


Q ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhcCC----------------------------------------
Q 001578          613 GIDPSNIECLYLRASCYHAIGEYREAI-KDYDAALDLELD----------------------------------------  651 (1050)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~p~----------------------------------------  651 (1050)
                      ..+|++...+..+-.++..-.+--+++ ..|...-+..|.                                        
T Consensus       247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl  326 (700)
T KOG1156|consen  247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL  326 (700)
T ss_pred             hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence            777777766665555553111112222 222222111110                                        


Q ss_pred             -----C-------------------------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578          652 -----S-------------------------------MEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE  695 (1050)
Q Consensus       652 -----~-------------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e  695 (1050)
                           +                               .+.-....+.+|..+..+...|.++.|..+++.|++--|...|
T Consensus       327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE  406 (700)
T KOG1156|consen  327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE  406 (700)
T ss_pred             HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence                 0                               0011223356677777888899999999999999999999887


Q ss_pred             HH
Q 001578          696 YW  697 (1050)
Q Consensus       696 ~w  697 (1050)
                      .+
T Consensus       407 ly  408 (700)
T KOG1156|consen  407 LY  408 (700)
T ss_pred             HH
Confidence            76

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.1e-09  Score=119.46  Aligned_cols=432  Identities=16%  Similarity=0.099  Sum_probs=330.6

Q ss_pred             HhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 001578           47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (1050)
Q Consensus        47 ~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~  125 (1050)
                      ..++++.+|-..|.+|+..+ .+.+++..-|.+-++.....+|-..+++|+.+=|.--+.+|..-..--.+|+...|.+.
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            57789999999999999999 88888999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccccccc
Q 001578          126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSR  205 (1050)
Q Consensus       126 ~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~  205 (1050)
                      |++-++..|+.......+ ..+.-....                                                    
T Consensus       164 ferW~~w~P~eqaW~sfI-~fElRykei----------------------------------------------------  190 (677)
T KOG1915|consen  164 FERWMEWEPDEQAWLSFI-KFELRYKEI----------------------------------------------------  190 (677)
T ss_pred             HHHHHcCCCcHHHHHHHH-HHHHHhhHH----------------------------------------------------
Confidence            999988777764432211 000000000                                                    


Q ss_pred             ccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccCCC
Q 001578          206 DVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICN  285 (1050)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~~  285 (1050)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (677)
T KOG1915|consen  191 --------------------------------------------------------------------------------  190 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHHHh
Q 001578          286 GPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRN  365 (1050)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~  365 (1050)
                                                                                            ..        
T Consensus       191 ----------------------------------------------------------------------er--------  192 (677)
T KOG1915|consen  191 ----------------------------------------------------------------------ER--------  192 (677)
T ss_pred             ----------------------------------------------------------------------HH--------
Confidence                                                                                  00        


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAI  442 (1050)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al  442 (1050)
                      ..-.+.+..-.+ ..+..++..|..-...|+..-|...|..+++.-.++.   ..+...|..-..+..++.|...|.-|+
T Consensus       193 aR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl  271 (677)
T KOG1915|consen  193 ARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL  271 (677)
T ss_pred             HHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000112222223 2367788888889999999999999999998655442   234445555566778999999999999


Q ss_pred             HhCCCc--HHHHHHHHHHHHHcCCHH---HHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          443 QSNPSA--GEAWKRRGQARAALGESV---EAI-----QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (1050)
Q Consensus       443 ~~~p~~--~~~~~~la~~~~~~g~~~---eA~-----~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~  512 (1050)
                      ..-|.+  .+.+..+...-.+-|+..   .++     --|++.+..+|.+.+.|+.+-.+....|+.+.-.+.|++|+..
T Consensus       272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan  351 (677)
T KOG1915|consen  272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN  351 (677)
T ss_pred             HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence            999987  444444444444556543   332     2477888889999999999999999999999999999999998


Q ss_pred             CCCCHH-------HHHHHHHHH---HHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001578          513 DKENKS-------AYTYLGLAL---SSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVL  578 (1050)
Q Consensus       513 ~p~~~~-------~~~~la~~~---~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al  578 (1050)
                      .|....       +|..+-.++   ....+.+.+.+.|+.++++-|..    +..|...|....++.+...|.+.+-.|+
T Consensus       352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI  431 (677)
T KOG1915|consen  352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI  431 (677)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence            776432       222222222   35688999999999999998864    7889999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 001578          579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL  658 (1050)
Q Consensus       579 ~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~  658 (1050)
                      ...|.+ ..+.....+-.++++++.....|++.++..|.+-.+|...|.+-..+|+.+.|...|+-|+....-+....  
T Consensus       432 G~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel--  508 (677)
T KOG1915|consen  432 GKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL--  508 (677)
T ss_pred             ccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH--
Confidence            999974 45556667778899999999999999999999999999999999999999999999999987653332211  


Q ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578          659 QCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW  697 (1050)
Q Consensus       659 ~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w  697 (1050)
                      +..+|..-.   ...+.++.|..+|++.++..+-.+ -|
T Consensus       509 lwkaYIdFE---i~~~E~ekaR~LYerlL~rt~h~k-vW  543 (677)
T KOG1915|consen  509 LWKAYIDFE---IEEGEFEKARALYERLLDRTQHVK-VW  543 (677)
T ss_pred             HHHHhhhhh---hhcchHHHHHHHHHHHHHhcccch-HH
Confidence            112222222   345889999999999998887766 55

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.53  E-value=9.9e-12  Score=142.74  Aligned_cols=274  Identities=15%  Similarity=0.057  Sum_probs=206.9

Q ss_pred             ccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHH
Q 001578          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGE  450 (1050)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~  450 (1050)
                      .......+..+..|..+...|++++|+..++++++.+|.+..++.. +..+...|++..+.....+++    ..+|....
T Consensus        37 ~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (355)
T cd05804          37 AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY  115 (355)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH
Confidence            3344556778889999999999999999999999999999987775 666665555444444444444    55677778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Q 001578          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLA  526 (1050)
Q Consensus       451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~la~~  526 (1050)
                      ++..+|.++...|++++|+..+++++++.|+++.++..+|.++...|++++|+.++++++...|..+    ..+..+|.+
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~  195 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999999887433    346689999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcC--cHHHHH---HHHHHHHHcCChHHHHHH--H-HHHHhhCCC--CHHHHHHHHHHHH
Q 001578          527 LSSIGEYKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLH  596 (1050)
Q Consensus       527 ~~~~g~~~eA~~~l~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~--l-~~al~~~p~--~~~~~~~la~~~~  596 (1050)
                      +...|++++|+..|++++...|.  ......   .+...+...|....+...  + .......+.  ........+.++.
T Consensus       196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~  275 (355)
T cd05804         196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA  275 (355)
T ss_pred             HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence            99999999999999999876662  222111   222233334433333332  1 111111121  1223346788888


Q ss_pred             HCCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          597 GLGQHKKAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       597 ~~g~~~eAi~~l~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      ..|+.++|...++........         ........|.++...|++++|.+.+..++.+.
T Consensus       276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999999887654322         24567788999999999999999999999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.7e-10  Score=129.45  Aligned_cols=316  Identities=13%  Similarity=0.005  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQAR  459 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~  459 (1050)
                      ...+...|.+++++|+|++|+.+|+.+++.+.++.+.............  -.+ . ..+.....|. ..+.+++.|.++
T Consensus       110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~  185 (652)
T KOG2376|consen  110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACIL  185 (652)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHH
Confidence            4455667778888888888888888887665444333322221111000  000 0 1222222232 344556666666


Q ss_pred             HHcCCHHHHHHHHHHHHhhCC-------CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Q 001578          460 AALGESVEAIQDLSKALEFEP-------NS--------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS------  518 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p-------~~--------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~------  518 (1050)
                      ...|+|.+|++.+++++.+..       .+        ..+...++.++..+|+..+|...|...++.+|.+..      
T Consensus       186 i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~  265 (652)
T KOG2376|consen  186 IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAV  265 (652)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHh
Confidence            666666666666666633210       00        124445556666666666666666666655544321      


Q ss_pred             -------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Q 001578          519 -------------------------------------------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (1050)
Q Consensus       519 -------------------------------------------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~  555 (1050)
                                                                 .+.+.+.+.+..+.-+.+.+.....-...|.......
T Consensus       266 NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l  345 (652)
T KOG2376|consen  266 NNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL  345 (652)
T ss_pred             cchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH
Confidence                                                       2233333333334433333333332222333322222


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH--------HhcCCCCHHHHHHHH
Q 001578          556 HLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSG--------LGIDPSNIECLYLRA  626 (1050)
Q Consensus       556 ~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eAi~~l~~a--------l~~~p~~~~~~~~la  626 (1050)
                      .......+...+.+|.+++....+.+|.. ..+...++.+...+|+++.|++.+...        .+.. ..+.+-..+-
T Consensus       346 l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv  424 (652)
T KOG2376|consen  346 LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIV  424 (652)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHH
Confidence            23333333346888888888888888876 667888899999999999999999833        3322 2244444555


Q ss_pred             HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578          627 SCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL  701 (1050)
Q Consensus       627 ~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~r~  701 (1050)
                      ..+...++.+-|...+..|+.---.....-..+...+-..+......|+-.+|...++....++|+..+..+...
T Consensus       425 ~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV  499 (652)
T KOG2376|consen  425 ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLV  499 (652)
T ss_pred             HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            566667776667777777665322211111111122333333445569999999999999999999998865543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.52  E-value=1.3e-11  Score=144.23  Aligned_cols=305  Identities=16%  Similarity=0.096  Sum_probs=229.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      .+.++..+.++...|++++|+++++.....-.+....+-.+|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            56788889999999999999999999988888889999999999999999999999999999999999999999988884


Q ss_pred             HcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001578          461 ALG-----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA-AVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (1050)
Q Consensus       461 ~~g-----~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~  534 (1050)
                      ...     +.+.-...|++.....|....+. .+...+..-..+.. +..++...+..  .-+.....+-.+|....+..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence            333     56777888888888888543322 12222222123333 33444444433  34555555555555333332


Q ss_pred             HHHHHHHHHHHh---------------CcCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578          535 KAEEAHLKAIQL---------------DRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (1050)
Q Consensus       535 eA~~~l~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~  597 (1050)
                      -....+......               .|..  ..+++.+|..|...|++++|+.+++++++..|..++.|...|.++..
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh  240 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            222222222211               1111  34668899999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH-HHHHHH-HHHHHHHHHHHhcC
Q 001578          598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK-FVLQCL-AFYQKEIALYTASK  675 (1050)
Q Consensus       598 ~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~-~~~~~~-~~~~~g~~~~~~~~  675 (1050)
                      .|++.+|...++.|-.+++.+-.+-...+..+.+.|+.++|.+.+......+-+.... .-.++. ....-|.++++.|+
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998888889999999999999999988876655322111 222222 23345888999999


Q ss_pred             HHHHHHHHHHhhc
Q 001578          676 INSEFCWFDIDGD  688 (1050)
Q Consensus       676 ~~~A~~~l~~a~~  688 (1050)
                      +..|+..|.....
T Consensus       321 ~~~ALk~~~~v~k  333 (517)
T PF12569_consen  321 YGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=2.6e-13  Score=131.72  Aligned_cols=122  Identities=21%  Similarity=0.236  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCc------HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh
Q 001578           31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ  104 (1050)
Q Consensus        31 ~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~------~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~  104 (1050)
                      .-...+.+.+.+||++|..|+|++|..-|+.||+..|..      .+|.|||.|+++++.++.||.+|.+||+++|+|.+
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k  169 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK  169 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence            335567888899999999999999999999999998543      45999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHH
Q 001578          105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA  152 (1050)
Q Consensus       105 a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~  152 (1050)
                      |+.|++.+|..+.+|++|+.+|++.+++.|......+.+.++.|....
T Consensus       170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e  217 (271)
T KOG4234|consen  170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE  217 (271)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence            999999999999999999999999999999999888888888886554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=2.7e-10  Score=127.75  Aligned_cols=279  Identities=15%  Similarity=0.080  Sum_probs=186.5

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPM-------YPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~--------~p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~al~  443 (1050)
                      .+.+.+|+.|..+...|+|.+|++.++.++.+        +.+       -..+...++.++..+|+.++|...|...+.
T Consensus       173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~  252 (652)
T KOG2376|consen  173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK  252 (652)
T ss_pred             chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            46788999999999999999999999999542        111       124567899999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcC---C-HH-HHHHHHHHHHhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          444 SNPSAGEAWKRRGQARAALG---E-SV-EAIQDLSKALEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSA  508 (1050)
Q Consensus       444 ~~p~~~~~~~~la~~~~~~g---~-~~-eA~~~l~kal~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~l~~  508 (1050)
                      .+|.+.........-+....   + ++ .++..++......+          .-..++.+.+.+.+..+.-+.+.+....
T Consensus       253 ~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~  332 (652)
T KOG2376|consen  253 RNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS  332 (652)
T ss_pred             hcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            99877544332222222111   1 11 11222222111111          1133566777777777777766666555


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHcCChHHHHHHHHHHH--------h
Q 001578          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVL--------Y  579 (1050)
Q Consensus       509 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al--------~  579 (1050)
                      .-...|..............+...+.+|+.++....+.+|.. ..+.+.++.+.+.+|+++.|++.+...+        +
T Consensus       333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~  412 (652)
T KOG2376|consen  333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE  412 (652)
T ss_pred             CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence            444444433322333333333347889999999999999987 6778888999999999999999998433        2


Q ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       580 ~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      . ...+.+-..+-.+++..++.+.|...+.+|+.-       .+.....+...+..-.+.|+-++|...+++.++.+|++
T Consensus       413 ~-~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d  491 (652)
T KOG2376|consen  413 A-KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND  491 (652)
T ss_pred             h-ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence            2 123444444555566666666666666666543       33333456667778888899999999999999999999


Q ss_pred             HHHHHH
Q 001578          653 MEKFVL  658 (1050)
Q Consensus       653 ~~~~~~  658 (1050)
                      .+....
T Consensus       492 ~~~l~~  497 (652)
T KOG2376|consen  492 TDLLVQ  497 (652)
T ss_pred             HHHHHH
Confidence            886543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.50  E-value=2.2e-12  Score=138.84  Aligned_cols=190  Identities=16%  Similarity=0.162  Sum_probs=157.8

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--
Q 001578          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--  450 (1050)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--  450 (1050)
                      ..+..++.++.+|..++..|++++|+..|++++..+|.++   .+++.+|.++...|++++|+..|+++++..|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4466788999999999999999999999999999999876   67899999999999999999999999999998765  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001578          451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (1050)
Q Consensus       451 -~~~~la~~~~~~--------g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~  521 (1050)
                       +++.+|.++...        |++++|+..+++++..+|++......+..+....+    .             ......
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~  170 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL  170 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence             788999999876        78999999999999999988665433322211110    0             012335


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (1050)
Q Consensus       522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p  582 (1050)
                      .+|.++...|++.+|+..+++++...|+.   +.+++.+|.++...|++++|..+++.+....|
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            78888999999999999999999997754   68999999999999999999998888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.50  E-value=2e-12  Score=139.24  Aligned_cols=190  Identities=16%  Similarity=0.061  Sum_probs=155.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 001578          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---  518 (1050)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~---  518 (1050)
                      ++..+..++.+|..+...|++++|+..+++++...|.++   .+++.+|.++...|++++|+..|+++++..|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            455678899999999999999999999999999999775   57899999999999999999999999999998765   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 001578          519 AYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (1050)
Q Consensus       519 ~~~~la~~~~~~--------g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~  590 (1050)
                      +++.+|.++...        |++++|+..+++++..+|++..++..+..+....    ..             .......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHHHH
Confidence            688899999876        7889999999999999998865543332221110    00             0123457


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       591 la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      +|.++...|++.+|+..|++++...|+.   +++++.+|.++..+|++++|..+++......|+
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            8889999999999999999999997764   589999999999999999999998888776653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.49  E-value=4e-13  Score=143.07  Aligned_cols=265  Identities=19%  Similarity=0.192  Sum_probs=212.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHH
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSN------PSAGEAWKR  454 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~  454 (1050)
                      -.-|.-+++.|++...+.+|+.+++...++    ..+|..+|.+|+.+++|++|+++-..-+.+.      -..+...-+
T Consensus        21 alEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN  100 (639)
T KOG1130|consen   21 ALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN  100 (639)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence            345788999999999999999999988776    3567889999999999999999865544321      123445678


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSA  508 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~lg~~~~~~g~--------------------~~~A~~~l~~  508 (1050)
                      +|.++..+|.|++|+.+..+-+.+...      ...+++++|.+|...|+                    ++.|.++|..
T Consensus       101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e  180 (639)
T KOG1130|consen  101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME  180 (639)
T ss_pred             ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence            999999999999999999888776432      36689999999998765                    3445566665


Q ss_pred             HHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578          509 CVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQ  576 (1050)
Q Consensus       509 al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~  576 (1050)
                      -+++....      ..++-+||..|+.+|+|+.|+...+.-+.+....      ..++.++|.++.-+|+++.|+++|++
T Consensus       181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            55553322      2467788999999999999999988888776544      46889999999999999999999999


Q ss_pred             HHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578          577 VLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDA  644 (1050)
Q Consensus       577 al~~~p------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~  644 (1050)
                      .+.+.-      -.+...+.+|..|.-..++++||.++.+-+.+..      ....+++.+|.++..+|..++|+.+.+.
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            875532      2356688999999999999999999999877643      2356899999999999999999999888


Q ss_pred             HHHhc
Q 001578          645 ALDLE  649 (1050)
Q Consensus       645 al~l~  649 (1050)
                      .+++.
T Consensus       341 hl~~s  345 (639)
T KOG1130|consen  341 HLRSS  345 (639)
T ss_pred             HHHHH
Confidence            87754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.47  E-value=1.6e-12  Score=127.86  Aligned_cols=122  Identities=14%  Similarity=0.052  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 001578          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (1050)
Q Consensus       537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p  616 (1050)
                      ...++++++++|++   +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            45677777777764   456677777788888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001578          617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL  661 (1050)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~  661 (1050)
                      +++.+++++|.++..+|++++|+..|++++++.|+++..+...+.
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~  134 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN  134 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            888888888888888888888888888888888887765544433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.45  E-value=3.5e-11  Score=146.31  Aligned_cols=278  Identities=14%  Similarity=-0.012  Sum_probs=199.6

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001578          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (1050)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (1050)
                      ...+..-.|.+..++..++..+...+++++|+..++.+++.+|+...+++.+|.++.+.+++..|...  .++...+.+.
T Consensus        20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~   97 (906)
T PRK14720         20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL   97 (906)
T ss_pred             hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence            34445667889999999999999999999999999999999999999999999999999997777665  5555544432


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001578          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (1050)
Q Consensus       450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~  529 (1050)
                                    ++ .+.+++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|..
T Consensus        98 --------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720         98 --------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             --------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence                          33 344444444444555666777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH--------------------HH
Q 001578          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------YH  589 (1050)
Q Consensus       530 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~--------------------~~  589 (1050)
                      . +.++|+.++.+|+..              +...++|.++.++..+.+..+|++.+.                    +.
T Consensus       163 ~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~  227 (906)
T PRK14720        163 E-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE  227 (906)
T ss_pred             h-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence            7 777777777777654              444556666666666666666654332                    33


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 001578          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQKEI  668 (1050)
Q Consensus       590 ~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p-~~~~~~~~~~~~~~~~g~  668 (1050)
                      -+=..|...+++++++.+++.+++.+|.+..+...++.||.  +.|.. ...|+.++++.. .+.               
T Consensus       228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~---------------  289 (906)
T PRK14720        228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN---------------  289 (906)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC---------------
Confidence            33467778888999999999999999999999999999887  44444 555666655431 010               


Q ss_pred             HHHHhcCHHHHHHHHHHhhccCCCCHHHHHhhc
Q 001578          669 ALYTASKINSEFCWFDIDGDIDPLFKEYWCKRL  701 (1050)
Q Consensus       669 ~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~~r~  701 (1050)
                          ...+..|+..|++-..+++|.--+.+.|+
T Consensus       290 ----~~~~~~~i~~fek~i~f~~G~yv~H~~WG  318 (906)
T PRK14720        290 ----RKPVKDCIADFEKNIVFDTGNFVYHRTWG  318 (906)
T ss_pred             ----CccHHHHHHHHHHHeeecCCCEEEEcCCC
Confidence                13567788899999999999766644443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.44  E-value=1.8e-12  Score=127.42  Aligned_cols=125  Identities=15%  Similarity=0.129  Sum_probs=77.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (1050)
Q Consensus       504 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~  583 (1050)
                      .+++++++++|++   +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4555556555543   3445666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (1050)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~  631 (1050)
                      ++.+++.+|.++..+|++++|+..|++++.+.|+++..+..++.+...
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666555555443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.43  E-value=1.2e-12  Score=139.51  Aligned_cols=268  Identities=17%  Similarity=0.166  Sum_probs=211.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHH
Q 001578          420 GRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFE------PNSADILHER  489 (1050)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~------p~~~~~~~~l  489 (1050)
                      .-|.-+++.|++...+.+|+.|++...++    ..+|..+|.+|..+++|++|+++-..-+.+.      -..+..--++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            34677889999999999999999988776    4478899999999999999999765544332      1235567789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHH
Q 001578          490 GIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGE--------------------YKKAEEAHLKA  543 (1050)
Q Consensus       490 g~~~~~~g~~~~A~~~l~~al~~~p~------~~~~~~~la~~~~~~g~--------------------~~eA~~~l~~a  543 (1050)
                      |..+-..|.|++|+.+..+-+.+...      ...+++++|.+|...|+                    ++.|.++|..-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887765432      35789999999988765                    34555666665


Q ss_pred             HHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578          544 IQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (1050)
Q Consensus       544 l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~eAi~~l~~a  611 (1050)
                      +++....      ..++-+||..|+-+|+|+.|+..-+.-+.+....      -.++.++|.++.-+|+++.|+++|++.
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            5554322      3567789999999999999999988877765432      357899999999999999999999998


Q ss_pred             HhcC----CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001578          612 LGID----PS--NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI  685 (1050)
Q Consensus       612 l~~~----p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~  685 (1050)
                      +.+.    ..  .+...|.+|..|.-+.++++|+.++.+-+.+...-. -.+-.+.+++.+|.++...+..++|+.+..+
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            7652    22  246788999999999999999999999988865432 2445567888999999999999999887766


Q ss_pred             hhc
Q 001578          686 DGD  688 (1050)
Q Consensus       686 a~~  688 (1050)
                      .++
T Consensus       341 hl~  343 (639)
T KOG1130|consen  341 HLR  343 (639)
T ss_pred             HHH
Confidence            543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.40  E-value=1.6e-09  Score=117.13  Aligned_cols=296  Identities=14%  Similarity=0.037  Sum_probs=227.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQAR  459 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~  459 (1050)
                      +......|..-+..|+|.+|.....+.-+..+...-++..-+.+..+.|+++.|-.++.++-+..+++ ..+...++.+.
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            44566778888889999999999999888887777888888999999999999999999999985543 56778899999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH--HHHcCCHH
Q 001578          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLA--LSSIGEYK  534 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~--~~~~g~~~  534 (1050)
                      ...|++..|..-..++++..|.++.++.....+|...|++.+...++.+.-+..--+.   .-+-+.+..  +.+..+-.
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~  243 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN  243 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999888776543222   112222211  12222222


Q ss_pred             HHH---HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578          535 KAE---EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (1050)
Q Consensus       535 eA~---~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a  611 (1050)
                      .+.   .+++..-..-..++.....++.-+...|+.++|.+..+.+++..-+. .....++  ...-+++..=++..++.
T Consensus       244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~--~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIP--RLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHh--hcCCCCchHHHHHHHHH
Confidence            222   23333333334557778888888899999999999999998775443 2222222  23567888888889999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578          612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (1050)
Q Consensus       612 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~  687 (1050)
                      ++..|+++..+..+|.++.+.+.+.+|..+|+.++...|+..        .+...+.++...|+..+|-..++.++
T Consensus       321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~--------~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS--------DYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh--------hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888754        34456666777777777777776554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=4e-12  Score=138.12  Aligned_cols=125  Identities=21%  Similarity=0.265  Sum_probs=111.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC----------------CcHHHHHHHHHHHHhhCHHHHHHHH
Q 001578           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY----------------EIQDICNRAFCYSQLELHKHVIRDC   92 (1050)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~----------------~~~~~~nra~~~~~~~~~~~Ai~~~   92 (1050)
                      ..+.++.+...|..||.+|+.|+|..|+..|++|+..-.                ...++.|+|.||+++++|.+|+..|
T Consensus       201 ~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c  280 (397)
T KOG0543|consen  201 AEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESC  280 (397)
T ss_pred             hHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Confidence            445788889999999999999999999999999985531                1245889999999999999999999


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHH
Q 001578           93 DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (1050)
Q Consensus        93 ~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~  153 (1050)
                      +++|.++|+|++|+||+|+|++.+|+|+.|+.+|++++++.|.+.....+|..+.......
T Consensus       281 ~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  281 NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988888888777665543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.40  E-value=6.3e-09  Score=122.03  Aligned_cols=133  Identities=14%  Similarity=0.069  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001578          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (1050)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (1050)
                      -+++.+|..+-..|++++|+++++++|+..|..++.++..|.++.+.|++.+|...++.|-.+++.+-.+-...+..+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            35578899999999999999999999999999999999999999999999999999999999999988888888999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001578          462 LGESVEAIQDLSKALEFEPN---S------ADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (1050)
Q Consensus       462 ~g~~~eA~~~l~kal~~~p~---~------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p  514 (1050)
                      .|+.++|...+..-...+.+   +      .......|.+|.+.|++..|+..|..+.+...
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999888776554411   1      12334568889999999999999988877643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=8.4e-11  Score=119.25  Aligned_cols=186  Identities=18%  Similarity=0.152  Sum_probs=136.1

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001578          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (1050)
Q Consensus       446 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~  525 (1050)
                      ++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+...+...-.
T Consensus        49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA  128 (289)
T KOG3060|consen   49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA  128 (289)
T ss_pred             chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence            34444555566666677777777777777777777777777777777777777777777777777777777777777767


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHH
Q 001578          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHK  602 (1050)
Q Consensus       526 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~  602 (1050)
                      +...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+|   ++.
T Consensus       129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777776655   456


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578          603 KAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (1050)
Q Consensus       603 eAi~~l~~al~~~p~~~~~~~~la~~~~~  631 (1050)
                      -|.++|.++++++|.+..+++.+-.+-..
T Consensus       209 ~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  209 LARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            67777777777777666666655544433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.38  E-value=1.5e-12  Score=135.75  Aligned_cols=115  Identities=19%  Similarity=0.169  Sum_probs=104.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHH
Q 001578           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI  107 (1050)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  107 (1050)
                      .++++..+...+.+||.||++|.|++||.||+++|..+| |+.++.|||.+|+++..|..|..+|+.|+.+|-.|++||-
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS  169 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS  169 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            556666666669999999999999999999999999995 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHH
Q 001578          108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF  143 (1050)
Q Consensus       108 ~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l  143 (1050)
                      |+|.+...+|...+|.++++.+|++.|+.-.-.+.+
T Consensus       170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence            999999999999999999999998888854443333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.38  E-value=2.4e-11  Score=126.10  Aligned_cols=125  Identities=21%  Similarity=0.268  Sum_probs=108.5

Q ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--HHHHHH
Q 001578          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-HGLGQ--HKKAIK  606 (1050)
Q Consensus       530 ~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~--~~eAi~  606 (1050)
                      .++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++.+.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567788888888889999999999999999998999999999999999999998888888888874 66677  588999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       607 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      .++++++.+|+++.+++.+|.++...|++++|+.++++++++.|.+.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999988887654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.37  E-value=5.9e-11  Score=121.90  Aligned_cols=175  Identities=20%  Similarity=0.193  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (1050)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~  513 (1050)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..++..+|...+..|++..|+..++++..+.
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            444444444555555555 5555555555555555555555555555555555555555566666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (1050)
Q Consensus       514 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~  593 (1050)
                      |++..+|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..|.-.|+++.|..++..+....+.+..+..+++.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666665555555555555556666


Q ss_pred             HHHHCCCHHHHHHHHH
Q 001578          594 LLHGLGQHKKAIKDLS  609 (1050)
Q Consensus       594 ~~~~~g~~~eAi~~l~  609 (1050)
                      +....|++++|.....
T Consensus       211 ~~~~~g~~~~A~~i~~  226 (257)
T COG5010         211 VVGLQGDFREAEDIAV  226 (257)
T ss_pred             HHhhcCChHHHHhhcc
Confidence            6556666555555443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=3.7e-10  Score=114.62  Aligned_cols=185  Identities=18%  Similarity=0.125  Sum_probs=165.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (1050)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (1050)
                      .+.....+-....+.+..|+.+-|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+..++...-
T Consensus        48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl  127 (289)
T KOG3060|consen   48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL  127 (289)
T ss_pred             CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence            34445556667778888999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---H
Q 001578          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE---Y  533 (1050)
Q Consensus       457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~---~  533 (1050)
                      .+...+|+.-+|++.+...++..+.+.++|..++.+|+..|+|++|.-++++++-+.|.++..+..+|.+++-+|.   +
T Consensus       128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~  207 (289)
T KOG3060|consen  128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL  207 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999888764   5


Q ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 001578          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFY  561 (1050)
Q Consensus       534 ~eA~~~l~~al~~~p~~~~~~~~la~~~  561 (1050)
                      .-|.++|.++++++|.+..+++.+-.+-
T Consensus       208 ~~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  208 ELARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence            6789999999999998887777665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.35  E-value=8.9e-11  Score=120.64  Aligned_cols=179  Identities=17%  Similarity=0.147  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001578          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (1050)
Q Consensus       398 ~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~  477 (1050)
                      ..+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++.+|+..++++..
T Consensus        50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            33666666667778888888 88888888888888888888888888888888888888888888888888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 001578          478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL  557 (1050)
Q Consensus       478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l  557 (1050)
                      +.|++..++..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+...|+++.|..++..+....+.+..+..++
T Consensus       129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NL  208 (257)
T COG5010         129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNL  208 (257)
T ss_pred             cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCChHHHHHHHHHH
Q 001578          558 TQFYQDLANSEKALECLQQV  577 (1050)
Q Consensus       558 a~~~~~~g~~~~A~~~l~~a  577 (1050)
                      +.+....|++++|..+..+-
T Consensus       209 Al~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         209 ALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHhhcCChHHHHhhcccc
Confidence            88888888888888766543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=8.9e-09  Score=112.42  Aligned_cols=318  Identities=14%  Similarity=0.132  Sum_probs=266.0

Q ss_pred             hhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001578          373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (1050)
Q Consensus       373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (1050)
                      .+..+..+...+...|..-..++++..|..+|+++|..+..+...|+..+.+-++......|...+++|+.+-|.-...|
T Consensus        65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW  144 (677)
T KOG1915|consen   65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW  144 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence            34444556788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001578          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (1050)
Q Consensus       453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~  532 (1050)
                      +....+-..+|+...|.+.|++-+...| +..+|......-.+.+..+.|...|++.+-.+|+ ...|...+..-...|+
T Consensus       145 yKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~  222 (677)
T KOG1915|consen  145 YKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN  222 (677)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999 6778888888888999999999999999998875 5778889999999999


Q ss_pred             HHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCH---HHH
Q 001578          533 YKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQH---KKA  604 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~---~eA  604 (1050)
                      ..-|...|.+|++...++   ...+...|..-..++.++.|..+|+-|+..-|.+  ...+..+-..-.+-|+.   +++
T Consensus       223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~  302 (677)
T KOG1915|consen  223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA  302 (677)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence            999999999999886655   2344556666667889999999999999998876  44454544444555654   334


Q ss_pred             HH-----HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HhcCH
Q 001578          605 IK-----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY---TASKI  676 (1050)
Q Consensus       605 i~-----~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~---~~~~~  676 (1050)
                      +-     .|+..+..+|.|.++|+.+-.+....|+.+.-.+.|++|+..-|-..+..+.....|+....++|   ...+.
T Consensus       303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~  382 (677)
T KOG1915|consen  303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV  382 (677)
T ss_pred             HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            32     47788889999999999999999999999999999999999888766655445555555555554   35677


Q ss_pred             HHHHHHHHHhhccCCC
Q 001578          677 NSEFCWFDIDGDIDPL  692 (1050)
Q Consensus       677 ~~A~~~l~~a~~l~p~  692 (1050)
                      +.+...|+.++++=|-
T Consensus       383 ertr~vyq~~l~lIPH  398 (677)
T KOG1915|consen  383 ERTRQVYQACLDLIPH  398 (677)
T ss_pred             HHHHHHHHHHHhhcCc
Confidence            7788888877777665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.35  E-value=7.9e-11  Score=122.18  Aligned_cols=154  Identities=18%  Similarity=0.231  Sum_probs=107.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001578          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (1050)
Q Consensus       387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (1050)
                      -+..|+..|+++......++..  +|..         -+...++.++++..++++++.+|++.+.|..+|.+|...|+++
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence            3445677777776544432221  1111         0112456677777778888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          467 EAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (1050)
Q Consensus       467 eA~~~l~kal~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  543 (1050)
                      +|+..|++++.+.|+++.++..+|.++ ...|+  +++|...++++++.+|++..++..+|.+++..|++++|+.+++++
T Consensus        91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370         91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888888888887777777777764 56566  477778888888877777777777777777777777777777777


Q ss_pred             HHhCcCcH
Q 001578          544 IQLDRNFL  551 (1050)
Q Consensus       544 l~~~p~~~  551 (1050)
                      ++..|.+.
T Consensus       171 L~l~~~~~  178 (198)
T PRK10370        171 LDLNSPRV  178 (198)
T ss_pred             HhhCCCCc
Confidence            77776553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.34  E-value=1.3e-10  Score=140.96  Aligned_cols=154  Identities=14%  Similarity=-0.008  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (1050)
Q Consensus       501 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  580 (1050)
                      +++.-+.......|.++.++..||.+....|.+++|...++.++++.|++..+..+++.++.+.+++++|+..+++++..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            33344444455578889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       581 ~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      +|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-..
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~  223 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR  223 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence            99999999999999999999999999999999988999999999999999999999999999999998766543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=5.4e-10  Score=117.53  Aligned_cols=292  Identities=14%  Similarity=0.100  Sum_probs=136.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (1050)
                      ..+.+|.+++..|+|++|+..|..+.+.+.-+.+...++|.|++.+|.|.+|.....+    .|+.+-....+-.+..+.
T Consensus        59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen   59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHh
Confidence            3344455555555555555555554444433444455555555555555554443333    233333333333333334


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (1050)
Q Consensus       463 g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~  542 (1050)
                      ++-++-...-+. +.   +..+-...++.+++..-.|.+|++.|.+.+.-+|+......++|.+|+++.-++-+.+.+.-
T Consensus       135 ndEk~~~~fh~~-Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v  210 (557)
T KOG3785|consen  135 NDEKRILTFHSS-LQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV  210 (557)
T ss_pred             CcHHHHHHHHHH-Hh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence            433332222111 11   11122233444444444555555555555555555555555555555555555555555555


Q ss_pred             HHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (1050)
Q Consensus       543 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~  621 (1050)
                      -+...|+..-+....+...++.=+-..|..-....... +...+.+-...-.-+.--.+-+.|++.+-..+..   -|++
T Consensus       211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEA  287 (557)
T KOG3785|consen  211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEA  287 (557)
T ss_pred             HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHh
Confidence            55555555555544444444332222222222222111 1111111000000000001112233333322222   2467


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD  688 (1050)
Q Consensus       622 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~  688 (1050)
                      ..++...|..+++.++|+...+   +++|..|.-++..+..+...|.......+..-|...|+..++
T Consensus       288 RlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~  351 (557)
T KOG3785|consen  288 RLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE  351 (557)
T ss_pred             hhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence            7788888888888888877654   467888877777777766666665555566666666665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.33  E-value=1.7e-10  Score=140.39  Aligned_cols=223  Identities=16%  Similarity=0.077  Sum_probs=188.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 001578          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE  488 (1050)
Q Consensus       409 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~  488 (1050)
                      ..+|.+..++..++..+...+++++|+..++.+++..|+...+++.+|.++.+.+++..|...  .++...+        
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------   94 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------   94 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence            356888999999999999999999999999999999999999999999999999987666555  4444443        


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChH
Q 001578          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (1050)
Q Consensus       489 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~  568 (1050)
                            ...++ .+++++...+...+.+..+++.+|.||..+|+.++|...|+++++.+|+++.++.++|..|... +.+
T Consensus        95 ------~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         95 ------QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             ------cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence                  33344 5666666677778888889999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH--------------------HHHHH
Q 001578          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY--------------------LRASC  628 (1050)
Q Consensus       569 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~--------------------~la~~  628 (1050)
                      +|+.++.+|+..              +...++|.++.++..+.+..+|++.+.+.                    -+-.+
T Consensus       167 KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~  232 (906)
T PRK14720        167 KAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP  232 (906)
T ss_pred             HHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            999999999876              66677899999999999999988765422                    23377


Q ss_pred             HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001578          629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAF  663 (1050)
Q Consensus       629 ~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~  663 (1050)
                      |...+++++++..++.+++.+|++..+....+.+|
T Consensus       233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y  267 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFY  267 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence            88899999999999999999999876544444333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=5.4e-09  Score=113.07  Aligned_cols=276  Identities=16%  Similarity=0.050  Sum_probs=219.3

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001578          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (1050)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (1050)
                      ..+..+..+...-.++.-+...-..|+++.|-.++.++-+..++ ...+...++......|+++.|.....++++..|.+
T Consensus       107 ~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~  186 (400)
T COG3071         107 LRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH  186 (400)
T ss_pred             HHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence            34444555666677778888899999999999999999988444 35678889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HH--HHHHHHHH--HHHcCCHHHHH---HHHHHHHHhCCCCHHHH
Q 001578          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-AD--ILHERGIV--NFKFKDFNAAV---EDLSACVKLDKENKSAY  520 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~--~~~~lg~~--~~~~g~~~~A~---~~l~~al~~~p~~~~~~  520 (1050)
                      +.+.....++|...|++.+...++.+.-+..--+ .+  -+-+.+..  +.+.++-..+.   .+++..-..-..++...
T Consensus       187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~  266 (400)
T COG3071         187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV  266 (400)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH
Confidence            9999999999999999999999998877654322 22  12222211  12222222222   34444444444567888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 001578          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (1050)
Q Consensus       521 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~  600 (1050)
                      ..++.-+...|+.++|.+....+++..-+.. ....++  ...-+++..=++..++.+...|+++..+..+|.++.+.+.
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~  343 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL  343 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence            8899999999999999999999998765433 222222  2357889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       601 ~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      +.+|..+|+.+++..|+ ...+..+|.++.++|+..+|.+.++.++.+.
T Consensus       344 w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         344 WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            99999999999998886 6788899999999999999999999998543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.31  E-value=2.2e-09  Score=139.10  Aligned_cols=311  Identities=13%  Similarity=0.010  Sum_probs=234.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---  448 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  448 (1050)
                      +......+..+...|++++|...+..+....+.         .......+|.++...|++++|...+++++...+..   
T Consensus       409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (903)
T PRK04841        409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY  488 (903)
T ss_pred             cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence            445567788888999999999999988764321         13445567888899999999999999999865542   


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 001578          449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----  515 (1050)
Q Consensus       449 --~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~-----  515 (1050)
                        ..+...+|.++...|++++|...+++++......      ...+..+|.++...|++++|...+++++.....     
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  568 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ  568 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence              2356778889999999999999999998764321      245677899999999999999999999886321     


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 001578          516 ---NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---  584 (1050)
Q Consensus       516 ---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---  584 (1050)
                         ....+..+|.++...|++++|...+.+++.....     ...++..+|.++...|++++|...+.++..+.+..   
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence               1234567888999999999999999999876332     24566678999999999999999999997763321   


Q ss_pred             HHHH----HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578          585 SKAY----HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (1050)
Q Consensus       585 ~~~~----~~la~~~~~~g~~~eAi~~l~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  656 (1050)
                      ....    ......+...|+.+.|...+.......+...    ..+..++.++...|++++|...+++++........ .
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~-~  727 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL-M  727 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc-h
Confidence            1111    1123445568999999999877665333222    22567899999999999999999999987543222 1


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 001578          657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL  692 (1050)
Q Consensus       657 ~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~  692 (1050)
                      ......+...|.++...|+.++|...+.+++++...
T Consensus       728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            234456777899999999999999999999887644

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.31  E-value=2.8e-10  Score=138.02  Aligned_cols=140  Identities=10%  Similarity=-0.001  Sum_probs=88.6

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 001578          478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL  557 (1050)
Q Consensus       478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~l  557 (1050)
                      ..|++++++.++|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578          558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (1050)
Q Consensus       558 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~  617 (1050)
                      |.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence            666666666666666666666666666666666666666666666666666666665443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.30  E-value=1.2e-10  Score=133.48  Aligned_cols=224  Identities=17%  Similarity=0.139  Sum_probs=191.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (1050)
Q Consensus       414 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~  493 (1050)
                      .......+|..+...|-...|+..|++.        ..|.....||...|+..+|.....+-++ .|.++..|..+|.+.
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL  467 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence            3455677889999999999999999885        5566788899999999999999888888 666888888888887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHH
Q 001578          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (1050)
Q Consensus       494 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  573 (1050)
                      ....-|++|.++.+..      +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|.++
T Consensus       468 ~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             cChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence            7776666666666543      3446677788788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       574 l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      |..++..+|++.++|.+++.+|...++-.+|...+++|++.+-++..+|.+.-.+....|.+++|++.|.+.+.+.-+.
T Consensus       542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~  620 (777)
T KOG1128|consen  542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY  620 (777)
T ss_pred             HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999999999998888999999999999999999999999988875443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.28  E-value=4.1e-10  Score=129.36  Aligned_cols=224  Identities=17%  Similarity=0.144  Sum_probs=199.6

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001578          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (1050)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (1050)
                      .|........+|..++..|-...|+.+|++.        ..+-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG  464 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG  464 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence            4556677788999999999999999999985        4566788999999999999999999888 777788888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (1050)
Q Consensus       457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA  536 (1050)
                      .+.....-|++|.++.+..      ++.+...+|......++|.++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus       465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            7776665555555554433      4557788888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (1050)
Q Consensus       537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~  615 (1050)
                      .++|..++.++|++..+|.+++.+|...++-.+|...+.++++.+-++..+|.+...+....|.+++|+..|.+.+.+.
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.27  E-value=1.9e-08  Score=130.42  Aligned_cols=268  Identities=17%  Similarity=0.058  Sum_probs=205.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 001578          386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR  454 (1050)
Q Consensus       386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  454 (1050)
                      .+|..+...|++++|...+++++...+..     ..+...+|.++...|++++|...+.+++......      ..++..
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~  536 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ  536 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            45677888999999999999998854432     2356778889999999999999999998764321      245677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----NKSAYT  521 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~  521 (1050)
                      +|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++.....     ....+.
T Consensus       537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  616 (903)
T PRK04841        537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA  616 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence            899999999999999999999886321        1234567889999999999999999999876332     245566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHH----HHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHH
Q 001578          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWG----HLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHL  590 (1050)
Q Consensus       522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~  590 (1050)
                      .+|.++...|++++|...+.++..+.+..   .....    .....+...|+.+.|...+.......+...    ..+..
T Consensus       617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~  696 (903)
T PRK04841        617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN  696 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence            78999999999999999999997764322   11111    122445568899999998877654332222    22567


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          591 RGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       591 la~~~~~~g~~~eAi~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      ++.++...|++++|+..+++++....      ....++..+|.++...|+.++|...+.+++++.....
T Consensus       697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence            89999999999999999999987632      2245788899999999999999999999999886543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.26  E-value=5.2e-11  Score=130.52  Aligned_cols=258  Identities=13%  Similarity=0.049  Sum_probs=196.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001578          388 GIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (1050)
Q Consensus       388 a~~~~~~g~~~~Ai~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  466 (1050)
                      .+.++..|+|..++..++ ....++ ........+.+++..+|+++..+......   .+....+...++..+...++.+
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchH
Confidence            345677899999998777 323333 23456788899999999988776555332   2333445566777666556677


Q ss_pred             HHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          467 EAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (1050)
Q Consensus       467 eA~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al  544 (1050)
                      .++..++..+....  .++.+....|.++...|++++|++.+.+.     .+.+.......++...++++.|.+.++.+.
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77777666543322  24556677788888899999999988764     567888888899999999999999999999


Q ss_pred             HhCcCcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Q 001578          545 QLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (1050)
Q Consensus       545 ~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~  622 (1050)
                      +.+.+..-.....+.+....|  .+.+|...|++..+..+..+..+..+|.++..+|+|++|...+.+++..+|++++++
T Consensus       159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L  238 (290)
T PF04733_consen  159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL  238 (290)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            888876655555555655555  699999999999888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCH-HHHHHHHHHHHHhcCCCHH
Q 001578          623 YLRASCYHAIGEY-REAIKDYDAALDLELDSME  654 (1050)
Q Consensus       623 ~~la~~~~~~g~~-~eA~~~~~~al~l~p~~~~  654 (1050)
                      .+++.+...+|+. +.+.+++.+....+|+++-
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            9999999999998 6677888998899999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.24  E-value=1.6e-10  Score=112.71  Aligned_cols=117  Identities=21%  Similarity=0.213  Sum_probs=97.4

Q ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (1050)
Q Consensus       538 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~  617 (1050)
                      +.+++++..+|++..+.+.+|..+...|++++|+..+++++..+|.++.++..+|.++..+|++++|+.++++++..+|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          618 NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       618 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ++..++.+|.++...|++++|+..|+++++++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            8888888888888888888888888888888887765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=2.6e-08  Score=102.96  Aligned_cols=384  Identities=17%  Similarity=0.155  Sum_probs=262.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Q 001578           45 KLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (1050)
Q Consensus        45 ~~~~~~~~~~Ai~~y~~ai~~~~-~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~  123 (1050)
                      .+.+...|..||++...-.+.+| +...+..+|.||...++|..|-..+++.=.+.|...+..+--++.+...+.+.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            45677889999999999988885 66669999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhhhhhhhhcccccCCCcccccCCCCCCCCCchhhhcCCCCcccccccc
Q 001578          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (1050)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~  203 (1050)
                      .+.....    +++.-..+.+++...+.           +.. +                                    
T Consensus        99 rV~~~~~----D~~~L~~~~lqLqaAIk-----------Yse-~------------------------------------  126 (459)
T KOG4340|consen   99 RVAFLLL----DNPALHSRVLQLQAAIK-----------YSE-G------------------------------------  126 (459)
T ss_pred             HHHHHhc----CCHHHHHHHHHHHHHHh-----------ccc-c------------------------------------
Confidence            8887772    22222222222221111           000 0                                    


Q ss_pred             ccccccccccCCCCCCCCCCCccccCCCCCCCccccccccCCccccccccCCCCCCCCCcccccccccccccCCCCCccC
Q 001578          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (1050)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~  283 (1050)
                                                          ++                                        .-
T Consensus       127 ------------------------------------Dl----------------------------------------~g  130 (459)
T KOG4340|consen  127 ------------------------------------DL----------------------------------------PG  130 (459)
T ss_pred             ------------------------------------cC----------------------------------------cc
Confidence                                                00                                        00


Q ss_pred             CCCCCCccccccccCcCCCCccccccCcccCcccCCCCccccccccccccccCCCCCcHHhhhhhhhhhHHHHHhhhHHH
Q 001578          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK  363 (1050)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~  363 (1050)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (459)
T KOG4340|consen  131 --------------------------------------------------------------------------------  130 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhHHHHHHHhhccC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          364 RNKKFCVTRISKSK--SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (1050)
Q Consensus       364 ~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  441 (1050)
                            ...+..+.  ..+++.....|...++.|+|++|++-|+.+++....++-.-+++|.++++.|+++.|+++....
T Consensus       131 ------~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  131 ------SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             ------hHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                  00001111  2346667788999999999999999999999999889999999999999999999999998887


Q ss_pred             HHh----CCCc-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHH
Q 001578          442 IQS----NPSA-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERG  490 (1050)
Q Consensus       442 l~~----~p~~-------------------------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~~~~~~~lg  490 (1050)
                      ++.    .|+.                         .+++...+.++++.++++.|.+.+...--...  -++..+.+++
T Consensus       205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A  284 (459)
T KOG4340|consen  205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA  284 (459)
T ss_pred             HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence            754    3321                         23566778888899999988876643321111  2355677776


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHH-Hc
Q 001578          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQ-DL  564 (1050)
Q Consensus       491 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-----~~~~~~la~~~~-~~  564 (1050)
                      ..- ..+++.+...-+.-.+.++|--.+...++-.+|.+..-++-|...+-+    +|+.     ....+.+-..+. ..
T Consensus       285 l~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~q  359 (459)
T KOG4340|consen  285 LMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQ  359 (459)
T ss_pred             Hhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCC
Confidence            543 346677778888888889998888888888889888888877765543    3432     122233333332 34


Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHH-HHHHH--HCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 001578          565 ANSEKALECLQQVLYIDKRFSKAYHLR-GLLLH--GLG---QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (1050)
Q Consensus       565 g~~~~A~~~l~~al~~~p~~~~~~~~l-a~~~~--~~g---~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA  638 (1050)
                      -..++|.+-+...-....   .-+..+ +.+..  ..+   ....|++.|+.++++.   -.+....|.+|....+|..+
T Consensus       360 T~pEea~KKL~~La~~l~---~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~v  433 (459)
T KOG4340|consen  360 TAPEEAFKKLDGLAGMLT---EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMV  433 (459)
T ss_pred             CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHH
Confidence            456666665554332111   111111 11111  111   2334566666666652   45778889999999999999


Q ss_pred             HHHHHHHHHhcCCCH
Q 001578          639 IKDYDAALDLELDSM  653 (1050)
Q Consensus       639 ~~~~~~al~l~p~~~  653 (1050)
                      .+.|+...+...++.
T Consensus       434 Ek~Fr~SvefC~ehd  448 (459)
T KOG4340|consen  434 EKIFRKSVEFCNDHD  448 (459)
T ss_pred             HHHHHHHHhhhcccc
Confidence            999999988876553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.21  E-value=2.8e-10  Score=110.91  Aligned_cols=116  Identities=23%  Similarity=0.233  Sum_probs=75.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 001578          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (1050)
Q Consensus       505 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~  584 (1050)
                      .+++++..+|++..+.+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Q 001578          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~  620 (1050)
                      +..++.+|.++...|++++|+..|+++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666666666666666665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=2.1e-09  Score=110.80  Aligned_cols=265  Identities=15%  Similarity=0.081  Sum_probs=196.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (1050)
Q Consensus       391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  470 (1050)
                      +.+..+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|++.-.+.|.........++.+++.+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46778899999999999999998888999999999999999999999999999999988888888999999999999988


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 001578          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (1050)
Q Consensus       471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  548 (1050)
                      ..........-..++...-+-+.+..+++..+....++    -|  +.+....+.|.+.++.|++++|.+-|+.+++...
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            87766543111233444556666667777666555544    34  4567788888888888888888888888888888


Q ss_pred             CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHHHHCC
Q 001578          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYI----DKRF-------------------------SKAYHLRGLLLHGLG  599 (1050)
Q Consensus       549 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~-------------------------~~~~~~la~~~~~~g  599 (1050)
                      -.+-.-++++.++++.++++.|+++..+.++.    .|..                         .+++...+.++++.|
T Consensus       176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~  255 (459)
T KOG4340|consen  176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR  255 (459)
T ss_pred             CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            88888888888888888888888887776643    2311                         245666778888888


Q ss_pred             CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001578          600 QHKKAIKDLSSGLGID--PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (1050)
Q Consensus       600 ~~~eAi~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~  660 (1050)
                      +++.|.+.+...--..  .-+|..+.++|..-. .+++.+..+-+.-.+.++|-.++.+.++.
T Consensus       256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlL  317 (459)
T KOG4340|consen  256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLL  317 (459)
T ss_pred             cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence            8888877654321111  113556667665433 46677777778888888887766554443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=3.2e-10  Score=118.63  Aligned_cols=120  Identities=25%  Similarity=0.343  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      ++-+-..|.-++..++|.+|+..|.+||+++|.++..|.++|.+|.++|.++.|++.++.++.++|.+..+|.++|.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44556778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~  500 (1050)
                      .+|++++|++.|+++++++|++.....+|..+-..+++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999877777766666555444

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=5.6e-11  Score=119.17  Aligned_cols=103  Identities=26%  Similarity=0.327  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001578           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (1050)
Q Consensus        34 ~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~-~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~  112 (1050)
                      +.+...+.+++++|..+.|+.||.+|.+||..+|+. .+|.|||.||+++.+|+.+..+|.+|++++|+.++++|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            345666789999999999999999999999999766 6688999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCC
Q 001578          113 FSALGRKEEALSVWEKGYEHALHQ  136 (1050)
Q Consensus       113 ~~~lg~~~~A~~~~~~al~~~~~~  136 (1050)
                      ++....|++|+..+++|+++...+
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcC
Confidence            999999999999999998886444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.14  E-value=5.3e-10  Score=127.09  Aligned_cols=112  Identities=23%  Similarity=0.254  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Q 001578           39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (1050)
Q Consensus        39 ~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg  117 (1050)
                      .+.++..+|..|+|++|+.+|++||+.+ .++.+++++|.+|+++|++++|+.++++||+++|++..+|+++|.+|+.+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            5678999999999999999999999999 566779999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHhHHHHHHHHHHH
Q 001578          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (1050)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~  150 (1050)
                      ++++|+..|++++++.|+.+.....+..+...+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999987766655554444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.10  E-value=3.2e-09  Score=102.57  Aligned_cols=112  Identities=16%  Similarity=0.090  Sum_probs=96.6

Q ss_pred             HHHhC-cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578          543 AIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (1050)
Q Consensus       543 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~  621 (1050)
                      ...+. ++..+..+.+|..+...|++++|...|+-+..++|.+...|+++|.++..+|++++|+..|.+++.++|+++.+
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34556 67778888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          622 LYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       622 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ++++|.|+...|+.+.|.+.|+.++...-+.++
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence            999999999999999999999999888754443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.07  E-value=3.6e-08  Score=109.56  Aligned_cols=153  Identities=20%  Similarity=0.164  Sum_probs=115.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (1050)
Q Consensus       412 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~  491 (1050)
                      |....+.+..+..++..|++++|+..+...+...|+++..+...+.++...++..+|.+.+++++.+.|+...+..++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            66777778888888888888888888888877788887777777888888888888888888888888877777777788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHH
Q 001578          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (1050)
Q Consensus       492 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  571 (1050)
                      .+++.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+                 +..|...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence            8888888888887777777777777777777777777777766654433                 34455567777777


Q ss_pred             HHHHHHHhhC
Q 001578          572 ECLQQVLYID  581 (1050)
Q Consensus       572 ~~l~~al~~~  581 (1050)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            7777776654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.07  E-value=3.6e-08  Score=109.55  Aligned_cols=153  Identities=20%  Similarity=0.170  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001578          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (1050)
Q Consensus       480 p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~  559 (1050)
                      |....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++.++|..+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            44555556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578          560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       560 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  639 (1050)
                      +|.+.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|..                 ..|..|...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence            66666666666666666666666666666666666666655544433                 2334444455555555


Q ss_pred             HHHHHHHHhc
Q 001578          640 KDYDAALDLE  649 (1050)
Q Consensus       640 ~~~~~al~l~  649 (1050)
                      ..+.++.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            5555555544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.06  E-value=7.7e-06  Score=93.22  Aligned_cols=135  Identities=16%  Similarity=0.076  Sum_probs=87.4

Q ss_pred             hccccchhHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC
Q 001578           23 IDELVRVDSVMASAITARIELAKL--CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (1050)
Q Consensus        23 ~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~   99 (1050)
                      +..++..-.+.-.....|.+..+.  -....|+.--.+|++++..- .-|..+.--.....++|+...--..+++||-.=
T Consensus        53 l~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL  132 (835)
T KOG2047|consen   53 LKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRAL  132 (835)
T ss_pred             HHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence            344555555555666555444332  23345556667777777654 555665555667788888888888999998766


Q ss_pred             CC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHHHHhhh
Q 001578          100 PT--LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR  157 (1050)
Q Consensus       100 P~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~~~~~l  157 (1050)
                      |-  +.+.+-..-.-...-+-.+-++..|++-|+++|......-..+.....+.++++.+
T Consensus       133 pvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~l  192 (835)
T KOG2047|consen  133 PVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRL  192 (835)
T ss_pred             chHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHH
Confidence            62  23333333344455677789999999999999998877666555555555555555

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.06  E-value=1.6e-05  Score=90.78  Aligned_cols=317  Identities=15%  Similarity=0.135  Sum_probs=238.0

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQS  444 (1050)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~-~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~  444 (1050)
                      .-++.++|.++..+..+..+  ..|+..+-+..|..++. .+|..     ...+...|..|...|+.+.|...|+++.+.
T Consensus       339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence            44567889999999887655  47889999999999886 46643     467899999999999999999999999987


Q ss_pred             CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCCHHHH
Q 001578          445 NPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------------------SADILHERGIVNFKFKDFNAA  502 (1050)
Q Consensus       445 ~p~----~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------------------~~~~~~~lg~~~~~~g~~~~A  502 (1050)
                      .-.    -..+|...|..-....+++.|+.++++|......                  +..+|..++.+....|-++..
T Consensus       417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest  496 (835)
T KOG2047|consen  417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST  496 (835)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            533    3678999999999999999999999998765221                  134677888888899999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHH---HHcCChHHHHHHHHHH
Q 001578          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFY---QDLANSEKALECLQQV  577 (1050)
Q Consensus       503 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~~~~~~~la~~~---~~~g~~~~A~~~l~~a  577 (1050)
                      ...|++.+.+.--.+....+.|..+....-+++|.+.|++.+.+.+  .-.++|...-..+   +.-...+.|..+|++|
T Consensus       497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            9999999999988999999999999999999999999999998864  4456665433322   2345789999999999


Q ss_pred             HhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHhcC
Q 001578          578 LYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH-----AIGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       578 l~~~p~~--~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~-----~~g~~~eA~~~~~~al~l~p  650 (1050)
                      ++..|..  -.++...|.+-..-|--..|+..|++|-..-+.  .-.+.+-.+|.     ..| ...-...|++|++.-|
T Consensus       577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~--a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp  653 (835)
T KOG2047|consen  577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLP  653 (835)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCC
Confidence            9988832  245667788888889999999999998765433  22222222222     222 3456788999999988


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-CCC-CHHHH
Q 001578          651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI-DPL-FKEYW  697 (1050)
Q Consensus       651 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l-~p~-~~e~w  697 (1050)
                      +....-     ....-+...-..|..+.|...|.-+-++ +|. ..++|
T Consensus       654 ~~~~r~-----mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW  697 (835)
T KOG2047|consen  654 DSKARE-----MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW  697 (835)
T ss_pred             hHHHHH-----HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence            764311     1122233345678999999888666554 443 44555

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.06  E-value=4.6e-09  Score=101.46  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=94.2

Q ss_pred             hhccC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001578          373 ISKSK-SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (1050)
Q Consensus       373 ~~~~~-~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (1050)
                      +.... +...+..+..|..++..|++++|...|+-+...+|.++..++++|.++..+|++++|+..|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34445 66678888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001578          452 WKRRGQARAALGESVEAIQDLSKALEFEP  480 (1050)
Q Consensus       452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p  480 (1050)
                      +.+.|.++...|+.+.|...|+.++....
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998888763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.01  E-value=2.9e-09  Score=116.79  Aligned_cols=235  Identities=16%  Similarity=0.068  Sum_probs=181.1

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--PSAGEAWKRRG  456 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la  456 (1050)
                      ...+..+.+.+.++.+|+++..+.-...   ..+....+...++..+...++.+.++..+...+...  +.++......|
T Consensus        33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A  109 (290)
T PF04733_consen   33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA  109 (290)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            3466677888899999998877655433   223334555666666655456667776665544332  23455666777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHH
Q 001578          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYK  534 (1050)
Q Consensus       457 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~  534 (1050)
                      .++...|++++|++.+.+.     .+.++......++...++++.|.+.++.+.+.+.+..-.....+++....|  .+.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence            8888899999999988764     578888889999999999999999999998888877766667777777766  589


Q ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Q 001578          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLG  613 (1050)
Q Consensus       535 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~-~eAi~~l~~al~  613 (1050)
                      +|...|++..+..+..+..+..++.++..+|++++|...+++++..+|.++.++.+++.+...+|+. +.+.+++.+...
T Consensus       185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            9999999988888888999999999999999999999999999999999999999999999999998 667778888888


Q ss_pred             cCCCCHHH
Q 001578          614 IDPSNIEC  621 (1050)
Q Consensus       614 ~~p~~~~~  621 (1050)
                      .+|+++.+
T Consensus       265 ~~p~h~~~  272 (290)
T PF04733_consen  265 SNPNHPLV  272 (290)
T ss_dssp             HTTTSHHH
T ss_pred             hCCCChHH
Confidence            89987644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.99  E-value=7.7e-09  Score=117.63  Aligned_cols=107  Identities=22%  Similarity=0.299  Sum_probs=54.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (1050)
                      ...|..++..|+|++|+.+|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578          465 SVEAIQDLSKALEFEPNSADILHERGI  491 (1050)
Q Consensus       465 ~~eA~~~l~kal~~~p~~~~~~~~lg~  491 (1050)
                      +++|+..|++++.++|++..+...++.
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~  112 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            555555555555555544444444333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.99  E-value=2.1e-06  Score=90.15  Aligned_cols=223  Identities=32%  Similarity=0.408  Sum_probs=138.6

Q ss_pred             CCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578          429 RELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVE  504 (1050)
Q Consensus       429 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~--~~p~~~~~~~~lg~~~~~~g~~~~A~~  504 (1050)
                      +.+..+...+..++...+.  ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444444444444444443  244455555555555555555555555554  444455555555555555555666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578          505 DLSACVKLDKENKSAYTYLGL-ALSSIGEYKKAEEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (1050)
Q Consensus       505 ~l~~al~~~p~~~~~~~~la~-~~~~~g~~~eA~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  580 (1050)
                      .+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            666665555554433444444 56666666666666666666554   23444555555566667777777777777777


Q ss_pred             CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          581 DKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       581 ~p~-~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      .+. ....+..++..+...+++++|+..+..++...|.....+..++..+...+.+++|...+.+++...|.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            766 56777777777777777777777777777777776666677777777666678888888888877776

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6.6e-09  Score=104.58  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------------------CCcHHHHHHHHHHHHhhCHHHHH
Q 001578           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-------------------YEIQDICNRAFCYSQLELHKHVI   89 (1050)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-------------------~~~~~~~nra~~~~~~~~~~~Ai   89 (1050)
                      .++-|......|.+||.+|..|+|.+|+..|..||..-                   ...+++.|.+.|++..|+|-+++
T Consensus       171 ddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl  250 (329)
T KOG0545|consen  171 DDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL  250 (329)
T ss_pred             chHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence            34556666678899999999999999999999998331                   22456889999999999999999


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHH
Q 001578           90 RDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (1050)
Q Consensus        90 ~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l  146 (1050)
                      ..|...|..+|++++|||++|.+....=+.++|..+|.+++++.|.....+..-+.+
T Consensus       251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~  307 (329)
T KOG0545|consen  251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRL  307 (329)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988888776555443333

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3.1e-09  Score=111.68  Aligned_cols=99  Identities=25%  Similarity=0.264  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCc----HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHH
Q 001578           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEI----QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK  109 (1050)
Q Consensus        35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~----~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~  109 (1050)
                      .|...|.+||.+|+.++|..|+.+|+++|... +++    .+|.|||+|.+.+|+|..|+.+|.+|+.++|++++|++|=
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            56778999999999999999999999999887 444    4599999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhc
Q 001578          110 GCAFSALGRKEEALSVWEKGYEHA  133 (1050)
Q Consensus       110 g~~~~~lg~~~~A~~~~~~al~~~  133 (1050)
                      +.|++.+.++++|+...+..+.+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhh
Confidence            999999999999999888885443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.96  E-value=2e-06  Score=90.29  Aligned_cols=224  Identities=29%  Similarity=0.351  Sum_probs=199.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001578          394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI  469 (1050)
Q Consensus       394 ~g~~~~Ai~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~  469 (1050)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            57788888888888888876  478888999999999999999999999987  68888899999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (1050)
Q Consensus       470 ~~l~kal~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  545 (1050)
                      ..+.+++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999999988877555666666 89999999999999999988776   3556677777778899999999999999999


Q ss_pred             hCcC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 001578          546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (1050)
Q Consensus       546 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~  617 (1050)
                      ..+. ....+..++..+...++++.|...+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999 69999999999999999999999999999999987778888888888888899999999999999887

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.96  E-value=1.3e-07  Score=101.27  Aligned_cols=178  Identities=16%  Similarity=0.118  Sum_probs=134.1

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  452 (1050)
                      .++..++..|..++..|+|++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            468889999999999999999999999999999988654   4899999999999999999999999999876   5578


Q ss_pred             HHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          453 KRRGQARAALG---------------E---SVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVK  511 (1050)
Q Consensus       453 ~~la~~~~~~g---------------~---~~eA~~~l~kal~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~l~~al~  511 (1050)
                      +.+|.++...+               +   ..+|+..|++.++..|+..-+   ...+..+...                
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----------------  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----------------  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----------------
Confidence            88888765443               1   346778888888888876421   1111111110                


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578          512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQ  576 (1050)
Q Consensus       512 ~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~  576 (1050)
                          -..--+..|..|.+.|.+..|+.-++.+++..|+.   .+++..++.+|..+|..++|......
T Consensus       174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence                01222456777788888888888888888877765   56777788888888888887776554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.93  E-value=1.1e-07  Score=99.38  Aligned_cols=172  Identities=20%  Similarity=0.220  Sum_probs=119.0

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  452 (1050)
                      .++..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|+++.|+..+++.++..|++   +.++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            357789999999999999999999999999998875   6789999999999999999999999999999886   4678


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001578          453 KRRGQARAALG-----------ESVEAIQDLSKALEFEPNSADIL---HERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (1050)
Q Consensus       453 ~~la~~~~~~g-----------~~~eA~~~l~kal~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~  518 (1050)
                      +.+|.++..+.           ...+|+..|+..+...|++..+-   ..+..+-              ..+      ..
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~--------------~~l------a~  142 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR--------------NRL------AE  142 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH--------------HHH------HH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH--------------HHH------HH
Confidence            88888876542           23477778888888877663221   1111110              000      12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHH
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA  570 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A  570 (1050)
                      --+.+|..|.+.|.+..|+..++.+++..|+.   .+++..++.+|..+|..+.|
T Consensus       143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            22456777777777777777777777777766   45667777777777777644

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.93  E-value=1.3e-09  Score=120.85  Aligned_cols=118  Identities=24%  Similarity=0.282  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001578           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (1050)
Q Consensus        35 ~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~  113 (1050)
                      .+...+.+++.+|.-+.|+.|+..|++||+++|| ..++.|||.++++.+++..|+.++.+||+++|.+.++|+++|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            4455667899999999999999999999999965 455889999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHHHHH
Q 001578          114 SALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA  152 (1050)
Q Consensus       114 ~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~~~~  152 (1050)
                      +.++++.+|+.+|++...+.|+.+...+.+.+.+-...+
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888777766553

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.90  E-value=2.6e-07  Score=99.08  Aligned_cols=182  Identities=15%  Similarity=0.057  Sum_probs=128.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 001578          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAY  520 (1050)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~  520 (1050)
                      ..+..++..|..+...|++++|+..|++++...|..+.+   .+.+|.++++.+++++|+..+++.++.+|+++   .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            356667778888888888888888888888888876543   47788888888888888888888888877763   567


Q ss_pred             HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578          521 TYLGLALSSIGE------------------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (1050)
Q Consensus       521 ~~la~~~~~~g~------------------~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p  582 (1050)
                      +.+|.++...+.                  ..+|+..|++.++..|+...+              .+|...+..+   ..
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l---~~  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL---KD  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH---HH
Confidence            777777644431                  245667777777777776321              1111111111   00


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~a  645 (1050)
                      ....--...|..|.+.|.|..|+.-++.+++..|+.   .++++.++.+|..+|..++|.......
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            111223467888899999999999999999988775   578899999999999999988766543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.87  E-value=4.7e-07  Score=96.19  Aligned_cols=302  Identities=14%  Similarity=0.144  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--cHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQS----NPS--AGEA  451 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~  451 (1050)
                      +.-....|.-++...++++|+..+.+.+..-.+.   ...+-.+..+...+|.|++++.+---.+..    +..  ..++
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea   85 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA   85 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677888999999999999999998754333   234455667788888888877765444433    222  2467


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 001578          452 WKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAY  520 (1050)
Q Consensus       452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~  520 (1050)
                      +.+++..+....++.+++.+-.-.+.+....     ......+|..+..++.++++++.|+.+++...++      ..++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            8899999999999999999988888764333     3567779999999999999999999999885443      2567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCC
Q 001578          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF  584 (1050)
Q Consensus       521 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------p~~  584 (1050)
                      ..+|..+....++++|.-+..+|.++....          .-+++.++..+..+|..-.|.++.+++.++.      +-.
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            889999999999999999999998875432          3567889999999999999999999987653      223


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHH-----HHHHHHHHHHhcCCCH
Q 001578          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYRE-----AIKDYDAALDLELDSM  653 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~~~~al~l~p~~~  653 (1050)
                      .....-+|.+|...|+.+.|..-|+.|...-..      ..+++...|.++....-..+     |++.-.+++++...-.
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG  325 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIG  325 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhh
Confidence            456778899999999999999999999865321      24567777777776655555     8888888888764332


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 001578          654 EKFVLQCLAFYQKEIALYTASKINSEFCWF  683 (1050)
Q Consensus       654 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l  683 (1050)
                       ............+..|...|.-++--..+
T Consensus       326 -~K~~vlK~hcrla~iYrs~gl~d~~~~h~  354 (518)
T KOG1941|consen  326 -AKLSVLKLHCRLASIYRSKGLQDELRAHV  354 (518)
T ss_pred             -hhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence             22222233444444444444333333333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.86  E-value=1.9e-07  Score=97.67  Aligned_cols=175  Identities=22%  Similarity=0.159  Sum_probs=108.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 001578          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT  521 (1050)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~  521 (1050)
                      .+..++..|..++..|++.+|+..|++++...|..   +.+.+.+|.+++..|++++|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            35567777777777777777777777777776654   55777777777777777777777777777777653   4666


Q ss_pred             HHHHHHHHcCC-----------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 001578          522 YLGLALSSIGE-----------YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (1050)
Q Consensus       522 ~la~~~~~~g~-----------~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~  590 (1050)
                      .+|.+++....           ..+|+..|+..+...|++..+-              +|...+..+-.   ....--+.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~  146 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY  146 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence            77776655421           2355556666666665542111              11111110000   00122345


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHH
Q 001578          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       591 la~~~~~~g~~~eAi~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~  639 (1050)
                      +|..|.+.|.+..|+..++.+++..|+..   +++..++.+|..+|..+.|.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            78888889999999999999998888874   57888888888888887544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.83  E-value=6.6e-09  Score=92.01  Aligned_cols=80  Identities=30%  Similarity=0.352  Sum_probs=72.2

Q ss_pred             cCCHHHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 001578           49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (1050)
Q Consensus        49 ~~~~~~Ai~~y~~ai~~~~---~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~  125 (1050)
                      +|+|+.|+..|+++++..|   +...++++|.||+++|+|++|+..+++ ++.+|.+...++.+|.|++.+|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6899999999999999996   345577899999999999999999999 889999999999999999999999999999


Q ss_pred             HHHH
Q 001578          126 WEKG  129 (1050)
Q Consensus       126 ~~~a  129 (1050)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.81  E-value=3.8e-07  Score=90.62  Aligned_cols=197  Identities=18%  Similarity=0.126  Sum_probs=126.7

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (1050)
                      ..+..++.+|..|-..|-..-|..-|.+++.+.|.-+.++..+|..+...|+++.|.+.|+..++++|.+..+..+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            34667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001578          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (1050)
Q Consensus       459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  538 (1050)
                      ++--|++.-|.+.+.+-.+.+|+++---..+-.. ...-++.+|...+.+-.+...+....++..+   +.+|+..+ ..
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS~-e~  217 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKISE-ET  217 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhccH-HH
Confidence            8888888888888888888888776422222111 1223455555444332222222222222211   12222221 12


Q ss_pred             HHHHHHHhCcCc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578          539 AHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (1050)
Q Consensus       539 ~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~  580 (1050)
                      .++++.+...++       .+.++.+|..+...|+.++|...|+-++..
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            233333222222       345666666666666666666666666554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.80  E-value=4.3e-09  Score=110.41  Aligned_cols=237  Identities=16%  Similarity=0.127  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      +-..|..|+.+|.|++|+.+|.+++..+|.++-.+.++|.+|+++..|..|...+..|+.++.....+|.+.+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (1050)
Q Consensus       464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  543 (1050)
                      +..+|.+.++.++.+.|++.++...++.+..    ..++    +-+.+..|..                 -+|.+-..++
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~-----------------~~A~Q~~~Q~  234 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGF-----------------TPARQGMIQI  234 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCC-----------------Cccccchhhh
Confidence            9999999999999999987766554444322    1111    1111112221                 1122222222


Q ss_pred             HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q 001578          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (1050)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~  623 (1050)
                      +.+        -.-|..+...|.++.++.++.+-+....++.....+ +..+.+.-++++|+....+++..+|......-
T Consensus       235 l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s  305 (536)
T KOG4648|consen  235 LPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS  305 (536)
T ss_pred             ccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccC
Confidence            211        112344556677777777776666555444443333 56666777788888888888888777655556


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          624 LRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       624 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ..+.+-.-+|...++...++.++.+.|.+..
T Consensus       306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648|consen  306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             CCchhHHHHhhhhhcCcchhheeeecccccc
Confidence            6666666677888888999999999888765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.80  E-value=1.6e-08  Score=85.77  Aligned_cols=67  Identities=30%  Similarity=0.335  Sum_probs=62.4

Q ss_pred             CcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 001578           68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL  134 (1050)
Q Consensus        68 ~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~~~~  134 (1050)
                      ++..+.++|.+++..|+|++|+..|++||+++|+++.+++.+|.++..+| ++++|+++|++++++.|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45678899999999999999999999999999999999999999999999 79999999999977665

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.80  E-value=9.6e-08  Score=90.42  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 001578          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLR  625 (1050)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~l  625 (1050)
                      ..++.+|..+...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            456777777778888888888888887777665   4577778888888888888888888888777764   5677888


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          626 ASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       626 a~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      |.++..+|++++|..+++++++..|++..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            88888888888888888888888887754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.80  E-value=1.2e-07  Score=89.78  Aligned_cols=105  Identities=24%  Similarity=0.322  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR  454 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  454 (1050)
                      ++.++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+..|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3556677777777777777777777777766655   4566777777777777777777777777766654   456667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEPNSADI  485 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~  485 (1050)
                      +|.++...|++++|+..+++++...|++..+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            7777777777777777777777776665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.80  E-value=1.5e-07  Score=111.28  Aligned_cols=124  Identities=13%  Similarity=0.142  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Q 001578          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHK  602 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~  602 (1050)
                      ...|+.+|+++++++|+++.++..++.++...        .+...+....++++..  ++..+.++..+|..+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            44555555555555555555555555444332        2234556666666654  6777888999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (1050)
Q Consensus       603 eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  657 (1050)
                      +|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++..+.
T Consensus       438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~  491 (517)
T PRK10153        438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW  491 (517)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence            99999999999999 4889999999999999999999999999999999986443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.79  E-value=1.2e-07  Score=104.70  Aligned_cols=172  Identities=19%  Similarity=0.218  Sum_probs=113.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CC----HHHHHHH
Q 001578          524 GLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RF----SKAYHLR  591 (1050)
Q Consensus       524 a~~~~~~g~~~eA~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~----~~~~~~l  591 (1050)
                      |.+|...+++++|...|.++......      -...+...+.+|.+. ++++|+.+|++++.+.-  +.    +..+..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34444444555555554444433211      123344444555444 66777777777766532  11    3567788


Q ss_pred             HHHHHHC-CCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001578          592 GLLLHGL-GQHKKAIKDLSSGLGIDP--SN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY  664 (1050)
Q Consensus       592 a~~~~~~-g~~~eAi~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~  664 (1050)
                      |.+|... |++++|+++|++|+++..  +.    ..++..+|.++..+|+|++|++.|+++....-++....+.....++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            9999888 999999999999998732  12    3577889999999999999999999999865444332333334567


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          665 QKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       665 ~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                      ..++++...++...|...|+.....+|+|..-
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            78889999999999999999999999987643

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.79  E-value=1.5e-07  Score=103.97  Aligned_cols=200  Identities=18%  Similarity=0.127  Sum_probs=119.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHH
Q 001578          490 GIVNFKFKDFNAAVEDLSACVKLDK--EN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHL  557 (1050)
Q Consensus       490 g~~~~~~g~~~~A~~~l~~al~~~p--~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~l  557 (1050)
                      |..|...+++++|.+.|.++....-  ++    ...+...+.++... ++++|+.+|++++.+.-..      ..++..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3444444444444444444433321  00    12333444444443 6677777777776653211      4567778


Q ss_pred             HHHHHHc-CChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 001578          558 TQFYQDL-ANSEKALECLQQVLYIDKR--F----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-------IECLY  623 (1050)
Q Consensus       558 a~~~~~~-g~~~~A~~~l~~al~~~p~--~----~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-------~~~~~  623 (1050)
                      |.+|... |++++|+++|++|++....  .    ...+..+|.++...|+|++|+..|++.....-++       ...++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            8888888 8999999999999876431  1    3467788999999999999999999988753221       23556


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 001578          624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (1050)
Q Consensus       624 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~  690 (1050)
                      ..+.|+...|+...|...+++....+|......-...+.-.-.+.--.....+..++..|+....+|
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence            7788999999999999999999999986544332222222222222223445666666665444433

>PRK11906 transcriptional regulator; Provisional

Probab=98.78  E-value=3e-07  Score=103.12  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC
Q 001578          383 FRLSRGIAQVNEG---KYASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS  447 (1050)
Q Consensus       383 ~~~~~a~~~~~~g---~~~~Ai~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~  447 (1050)
                      .++.+|...+..+   ..+.|+.+|.+++   +.+|+.+.++..+|.|++..         .+..+|....++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4477787776665   4568888899999   88899999999998888764         2345667777777777777


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 001578          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-  526 (1050)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-  526 (1050)
                      ++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-.+ 
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~  416 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD  416 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777777777777777655443333333 


Q ss_pred             HHHcCCHHHHHHHHHH
Q 001578          527 LSSIGEYKKAEEAHLK  542 (1050)
Q Consensus       527 ~~~~g~~~eA~~~l~~  542 (1050)
                      .+.....++|+..|-+
T Consensus       417 ~~~~~~~~~~~~~~~~  432 (458)
T PRK11906        417 MYVPNPLKNNIKLYYK  432 (458)
T ss_pred             HHcCCchhhhHHHHhh
Confidence            3444455666665544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.77  E-value=3.5e-07  Score=108.24  Aligned_cols=137  Identities=18%  Similarity=0.158  Sum_probs=82.3

Q ss_pred             cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHh--CC
Q 001578          380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--------LEAAISDFTEAIQS--NP  446 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~---~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~--------~~~A~~~~~~al~~--~p  446 (1050)
                      ++..++.+|..++..++   +..|+.+|+++++.+|+++.++..++.++.....        ...+.....+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            34455777877776655   7788888888888888888888887777655321        23333344443332  44


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001578          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (1050)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~  517 (1050)
                      .++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++|+.++|.++
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            4455555555555555555555555555555555 345555555555555555555555555555555544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.76  E-value=9.5e-07  Score=87.82  Aligned_cols=196  Identities=22%  Similarity=0.211  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  528 (1050)
                      +..++..|..|-..|-..-|...|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|...++++|.+..+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            34556667777777778888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 001578          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l  608 (1050)
                      .-|++.-|.+-+.+-.+.+|+++---..+-.. ...-+..+|...+.+-.+...+....+...+..   +|+..+ ...+
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~-e~l~  219 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE-ETLM  219 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH-HHHH
Confidence            88888888888888888888775322221111 123345555544433322222222333322222   222211 1233


Q ss_pred             HHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          609 SSGLGIDPSN-------IECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       609 ~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      +++.+-..++       .++++.+|..+...|+.++|...|+-++..+
T Consensus       220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            3333333332       3678889999999999999999998888754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.76  E-value=2.5e-07  Score=94.19  Aligned_cols=121  Identities=22%  Similarity=0.271  Sum_probs=82.7

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001578          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (1050)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (1050)
                      ..+..+..++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            344556677788888888888888888888887765543   35677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001578          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (1050)
Q Consensus       453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~  516 (1050)
                      ..+|.++...|+...+...+..++.                    .+++|++++++++..+|++
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            7777777777776665555444432                    2455666666666666654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.75  E-value=3.7e-07  Score=93.00  Aligned_cols=90  Identities=19%  Similarity=0.259  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001578          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (1050)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~  559 (1050)
                      +..++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..+|.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3344555555555555555555555555443332   2344444555555555555555555555544444444444444


Q ss_pred             HHHHcCChHHHHH
Q 001578          560 FYQDLANSEKALE  572 (1050)
Q Consensus       560 ~~~~~g~~~~A~~  572 (1050)
                      ++...|+...+..
T Consensus       115 ~~~~~g~~~~a~~  127 (172)
T PRK02603        115 IYHKRGEKAEEAG  127 (172)
T ss_pred             HHHHcCChHhHhh
Confidence            4444444444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.74  E-value=1e-07  Score=84.90  Aligned_cols=98  Identities=30%  Similarity=0.486  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 001578          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (1050)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~  632 (1050)
                      +++.+|.++...|++++|+..+++++...|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            35566666677777777777777777776666666777777777777777777777777777777667777777777777


Q ss_pred             cCHHHHHHHHHHHHHhcC
Q 001578          633 GEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       633 g~~~eA~~~~~~al~l~p  650 (1050)
                      |++++|...+.++++..|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            777777777777776665

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=2.7e-07  Score=97.81  Aligned_cols=116  Identities=25%  Similarity=0.315  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 001578          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACV  510 (1050)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~l~~al  510 (1050)
                      .+.-++.-+..+|++.+.|..+|.+|..+|++..|...|.+++++.|++++.+..+|.+++...   ...++...+++++
T Consensus       141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            3333444444455555555555555555555555555555555555555555555554444332   2334455555555


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 001578          511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (1050)
Q Consensus       511 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  549 (1050)
                      ..+|.+..+...||..++..|+|.+|...++..+...|.
T Consensus       221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            555555555555555555555555555555555554443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.73  E-value=3.8e-08  Score=83.43  Aligned_cols=67  Identities=30%  Similarity=0.530  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcC
Q 001578          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG-EYREAIKDYDAALDLEL  650 (1050)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~p  650 (1050)
                      ++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46677888888888888888888888888888888888888888888888 68888888888888876

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.73  E-value=4.4e-06  Score=102.40  Aligned_cols=234  Identities=12%  Similarity=0.062  Sum_probs=180.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHH
Q 001578          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQ  470 (1050)
Q Consensus       396 ~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~eA~~  470 (1050)
                      +-.+..+-|++.+..+|+..-.|...-..+...++.++|.+.+++|+.. ++..    ..+|..+-.+...-|.-+.-.+
T Consensus      1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            3344556777788888888888888888888888888898888888863 3332    2345555555555566777778


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Q 001578          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-  549 (1050)
Q Consensus       471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-  549 (1050)
                      .|++|.+... ...++..|..+|...+++++|.++|+..++...+....|..+|..++.+.+-++|...+.+|++.-|. 
T Consensus      1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            8888887653 45577788888888888888888888888888877888888888888888888888888888888887 


Q ss_pred             -cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q 001578          550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID--PSNIECLYLRA  626 (1050)
Q Consensus       550 -~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~--p~~~~~~~~la  626 (1050)
                       +.......|.+-++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.  |.....+|..=
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence             677777888888888888888888888888888888888888888888888888888888888764  33334444433


Q ss_pred             HHHH
Q 001578          627 SCYH  630 (1050)
Q Consensus       627 ~~~~  630 (1050)
                      .-|.
T Consensus      1678 LeyE 1681 (1710)
T KOG1070|consen 1678 LEYE 1681 (1710)
T ss_pred             HHHH
Confidence            3333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=7.7e-06  Score=84.42  Aligned_cols=256  Identities=15%  Similarity=0.047  Sum_probs=191.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001578          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (1050)
Q Consensus       388 a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  467 (1050)
                      .+-++..|+|..++..-.+.-... ........+.+.|..+|++...+......-   .....+...++.+...-++.++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            445677899999998877765443 677788889999999999876655443322   1223445555665555566555


Q ss_pred             HHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          468 AIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (1050)
Q Consensus       468 A~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  545 (1050)
                      -+.-+.+.+....  .+......-|.++...+++++|+......     .+.++...--.++.+..+.+-|...++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5555544443322  23345666788899999999999988763     3445666667788899999999999999988


Q ss_pred             hCcCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Q 001578          546 LDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (1050)
Q Consensus       546 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~  621 (1050)
                      ++.+  ..+..||.++..    .+++.+|.-+|+..-+..|..+.....++.+...+|+|++|...++.++..+++++++
T Consensus       166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            8755  334445555443    3568899999999998888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCHHHHHH-HHHHHHHhcCCCHH
Q 001578          622 LYLRASCYHAIGEYREAIK-DYDAALDLELDSME  654 (1050)
Q Consensus       622 ~~~la~~~~~~g~~~eA~~-~~~~al~l~p~~~~  654 (1050)
                      +.++..+-...|...++.. .+.+....+|+++-
T Consensus       244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            9999999999998877765 55666677787763

>PRK11906 transcriptional regulator; Provisional

Probab=98.71  E-value=6.6e-07  Score=100.47  Aligned_cols=158  Identities=12%  Similarity=0.032  Sum_probs=116.2

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 001578          419 IGRGTARAFQRE---LEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA  483 (1050)
Q Consensus       419 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~l~kal~~~p~~~  483 (1050)
                      +.+|...+..+.   .+.|+.+|.+++   +++|+...+|..+|.++...         .+..+|.+..+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            666666665553   467888899999   88999999998888888754         234567777888888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-HH
Q 001578          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQ  562 (1050)
Q Consensus       484 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~-~~  562 (1050)
                      .++..+|.++...++++.|+..|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~  418 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY  418 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888764433322222 23


Q ss_pred             HcCChHHHHHHHHH
Q 001578          563 DLANSEKALECLQQ  576 (1050)
Q Consensus       563 ~~g~~~~A~~~l~~  576 (1050)
                      .....++|+..|-+
T Consensus       419 ~~~~~~~~~~~~~~  432 (458)
T PRK11906        419 VPNPLKNNIKLYYK  432 (458)
T ss_pred             cCCchhhhHHHHhh
Confidence            34555666666544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.1e-07  Score=97.40  Aligned_cols=122  Identities=23%  Similarity=0.203  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Q 001578          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLS  609 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~eAi~~l~  609 (1050)
                      .+..+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.+++.+.   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            5566677778888889999999999999999999999999999999999999988888888876543   4567888999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      +++..+|.+..+++.||..+++.|+|.+|...++..++..|.+..
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999999999999999999988876644

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.69  E-value=3e-07  Score=93.27  Aligned_cols=77  Identities=22%  Similarity=0.210  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (1050)
Q Consensus       520 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  596 (1050)
                      ++.+|.++...|++++|+..|++++.+.|+.   +.++.++|.++...|++++|+.++++++.+.|.....+..+|.++.
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            3444444444444444444444444443321   2244444444444444444444444444444444444444444444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.69  E-value=7.7e-07  Score=87.82  Aligned_cols=128  Identities=18%  Similarity=0.147  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001578          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRR  455 (1050)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  455 (1050)
                      ...+..+...+..++...+...++.++..+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   ..+...+
T Consensus        12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344555555667888888888888888888887   4567778888888888888888888888877554   3467778


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (1050)
Q Consensus       456 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al  510 (1050)
                      |.++...|++++|+..++.. .-.+..+.++..+|.++...|++++|+..|++++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            88888888888888888652 3333456677778888888888888888887764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.68  E-value=2.3e-07  Score=82.61  Aligned_cols=97  Identities=28%  Similarity=0.414  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      ++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44556666666666666666666666666665566666666666666666666666666666665555666666666666


Q ss_pred             CHHHHHHHHHHHHhhCC
Q 001578          464 ESVEAIQDLSKALEFEP  480 (1050)
Q Consensus       464 ~~~eA~~~l~kal~~~p  480 (1050)
                      ++++|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            66666666666555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.67  E-value=2.4e-06  Score=91.02  Aligned_cols=236  Identities=17%  Similarity=0.190  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHH
Q 001578          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADIL  486 (1050)
Q Consensus       416 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~  486 (1050)
                      .-....|.-++...++++|+....+.+..-.+.   ...+-.+..+...+|.|++++.+--..+...-+      .-+++
T Consensus         7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~   86 (518)
T KOG1941|consen    7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY   86 (518)
T ss_pred             HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888899999999998888764443   234555677888889998887765544443221      14578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHH
Q 001578          487 HERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWG  555 (1050)
Q Consensus       487 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~  555 (1050)
                      .+++..+....++.+++.+-+..+.+....     ......+|.++..++.++++++.|+.|+.+..++      ..++.
T Consensus        87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv  166 (518)
T KOG1941|consen   87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV  166 (518)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence            889999999999999999998888774333     2567779999999999999999999999886544      35678


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCC----C------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCH
Q 001578          556 HLTQFYQDLANSEKALECLQQVLYIDKR----F------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID------PSNI  619 (1050)
Q Consensus       556 ~la~~~~~~g~~~~A~~~l~~al~~~p~----~------~~~~~~la~~~~~~g~~~eAi~~l~~al~~~------p~~~  619 (1050)
                      .+|.+|....++++|+-+..++.++...    +      ..+++.++..+..+|+.-.|.++.+++.++.      +-..
T Consensus       167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a  246 (518)
T KOG1941|consen  167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA  246 (518)
T ss_pred             hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence            9999999999999999999999877432    1      3467788999999999999999999997763      2234


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      ....-+|.+|...|+.+.|..-|+.|......
T Consensus       247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~  278 (518)
T KOG1941|consen  247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMAS  278 (518)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence            56777999999999999999999999877543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.65  E-value=1.1e-06  Score=86.69  Aligned_cols=117  Identities=22%  Similarity=0.142  Sum_probs=80.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHH
Q 001578          529 SIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHK  602 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~  602 (1050)
                      ..++...+...++..+..+|+.   ..+.+.+|.++...|++++|...|+.++...|+.   ..+...+|.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4666667766777777777766   4556667777777777777777777777766443   345666777777777777


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001578          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (1050)
Q Consensus       603 eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  646 (1050)
                      +|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            77777755 22333445667777777777777777777777664

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.65  E-value=7e-05  Score=80.94  Aligned_cols=261  Identities=18%  Similarity=0.106  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (1050)
                      +-+++.-+...+-.|+++.|.+-|+..+. +|.. .-.+..+-......|..+.|+.+-+++....|.-+.++...-...
T Consensus       120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            55566667777777777777777776653 2221 111222222234567777777777777777777777776666667


Q ss_pred             HHcCCHHHHHHHHHHHHhh---CCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001578          460 AALGESVEAIQDLSKALEF---EPNSAD---ILHERGIVN-FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~---~p~~~~---~~~~lg~~~-~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~  532 (1050)
                      ...|+++.|+++.+.....   .++..+   +-..-+... .-.-+...|.....+++++.|+...+-..-+..++..|+
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~  278 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN  278 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence            7777777777777655432   221111   111111111 122356677777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV---LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a---l~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~  609 (1050)
                      ..++-..++.+.+..|. +.    ++.+|....--+.++.-++++   ..+.|++.+.....+...+..|++..|..--+
T Consensus       279 ~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae  353 (531)
T COG3898         279 LRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE  353 (531)
T ss_pred             hhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence            77777777777776664 22    223333333333344444433   34456777777777777777777777777777


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh
Q 001578          610 SGLGIDPSNIECLYLRASCYHAI-GEYREAIKDYDAALDL  648 (1050)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l  648 (1050)
                      .+....|. ..++..++.+-... |+-.++...+-+++.-
T Consensus       354 aa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         354 AAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            77777665 45566666666555 7777777777777653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=5.4e-07  Score=91.40  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 001578          395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI  469 (1050)
Q Consensus       395 g~~~~Ai~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~  469 (1050)
                      +.|..+...+...++..+..  ..+++.+|.++...|++++|+..|.+++.+.|+.   +.++.++|.++...|++++|+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            34555555555554444433  4555667777777777777777777776665542   346667777777777777777


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578          470 QDLSKALEFEPNSADILHERGIVNF  494 (1050)
Q Consensus       470 ~~l~kal~~~p~~~~~~~~lg~~~~  494 (1050)
                      .++++++.+.|.....+..+|.++.
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            7777777777766666666666666

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.64  E-value=7.6e-06  Score=100.39  Aligned_cols=219  Identities=13%  Similarity=0.088  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 001578          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS----ADILHERGIVNFKFKDFNAAVEDL  506 (1050)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p~~----~~~~~~lg~~~~~~g~~~~A~~~l  506 (1050)
                      .+..+.|++.+..+|+..-.|..+...+.+.++.++|.+..++|+.. ++..    ..+|..+-++...-|.-+.-.+.|
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            34567889999999999999999999999999999999999999974 4433    235555555555667777788888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C
Q 001578          507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--F  584 (1050)
Q Consensus       507 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~  584 (1050)
                      ++|.+... ....+..|..+|...+.+++|.++|+..++...+....|..+|..++.+.+-+.|...+.+|+..-|.  +
T Consensus      1521 eRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred             HHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence            88887642 34678889999999999999999999999999988999999999999999999999999999999997  7


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      .+.....|.+.++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.-.
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            7888889999999999999999999999999999999999999999999999999999999988643

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=5.4e-07  Score=98.66  Aligned_cols=148  Identities=27%  Similarity=0.274  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Q 001578          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (1050)
Q Consensus       484 ~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~  563 (1050)
                      ......|..|++.|+|..|...|++++..-....            .-+.++....  .++     -..++.+++.++.+
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~--~~~-----k~~~~lNlA~c~lK  269 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA--EAL-----KLACHLNLAACYLK  269 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH--HHH-----HHHHhhHHHHHHHh
Confidence            3445677788888888888888887766432110            0000111100  001     13467788888888


Q ss_pred             cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH-HHHH
Q 001578          564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA-IKDY  642 (1050)
Q Consensus       564 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~  642 (1050)
                      +++|.+|+...+++|..+|++..+++..|.++..+|+|+.|+..|+++++++|+|..+...+..+-.+..++.+. .+.|
T Consensus       270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888777776665554 5667


Q ss_pred             HHHHHhcC
Q 001578          643 DAALDLEL  650 (1050)
Q Consensus       643 ~~al~l~p  650 (1050)
                      .+.+..-+
T Consensus       350 ~~mF~k~~  357 (397)
T KOG0543|consen  350 ANMFAKLA  357 (397)
T ss_pred             HHHhhccc
Confidence            77666544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.61  E-value=0.00014  Score=78.82  Aligned_cols=297  Identities=16%  Similarity=0.099  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARA  460 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~  460 (1050)
                      -+..|.+....|+-..|.+.-.+.-++-..+  +-++..-+....-.|+++.|.+-|+..+. +|+. .-.+..+-.-..
T Consensus        87 ALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAq  165 (531)
T COG3898          87 ALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQ  165 (531)
T ss_pred             HHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHH
Confidence            3556777778899999999988876543333  45666678888889999999999998764 3332 222333334445


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHH-HHHcCCH
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---DKENK---SAYTYLGLA-LSSIGEY  533 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~---~p~~~---~~~~~la~~-~~~~g~~  533 (1050)
                      ..|..+.|..+-+++....|.-+.+....-...+..|+++.|+++.+.....   .++..   .+...-+.. -....+.
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            7899999999999999999999988888888889999999999999876553   23221   111112222 2223568


Q ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Q 001578          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG--  611 (1050)
Q Consensus       534 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a--  611 (1050)
                      ..|...-.+++++.|+...+-..-+..+++.|+..++-.+++.+.+..|. +.    ++.+|....--+.++.-++++  
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta~dRlkRa~~  320 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTALDRLKRAKK  320 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999998885 33    334444444444555555544  


Q ss_pred             -HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhhc-
Q 001578          612 -LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY-TASKINSEFCWFDIDGD-  688 (1050)
Q Consensus       612 -l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~l~~a~~-  688 (1050)
                       ..+.|++.+.....+..-...|++..|..--+.+....|...        .|..++.... ..|+-.+...++.++.. 
T Consensus       321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--------~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--------AYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--------HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence             456899999999999999999999999999999999998753        2223333332 34777888888877765 


Q ss_pred             -cCCCCH
Q 001578          689 -IDPLFK  694 (1050)
Q Consensus       689 -l~p~~~  694 (1050)
                       .+|.|.
T Consensus       393 PrdPaW~  399 (531)
T COG3898         393 PRDPAWT  399 (531)
T ss_pred             CCCCccc
Confidence             344443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.61  E-value=6.1e-05  Score=89.49  Aligned_cols=226  Identities=15%  Similarity=0.043  Sum_probs=134.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (1050)
Q Consensus       391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  470 (1050)
                      ....+++.+|+....++++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..++++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            34556777777777777777777777777777777777777777766666555566666666677777777777777777


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHH---------HHHHHH
Q 001578          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIGEYK---------KAEEAH  540 (1050)
Q Consensus       471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~-~~~la~~~~~~g~~~---------eA~~~l  540 (1050)
                      +|++++..+|. .+.+..+-.+|.+.+.|.+-.+.--+..+..|.++.. |.-+..++......+         -|....
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            77777777776 6666666666666666665555544555556665533 233333333322222         233444


Q ss_pred             HHHHHhC-cCc--HHHHHHHHHHHHHcCChHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578          541 LKAIQLD-RNF--LEAWGHLTQFYQDLANSEKALECLQQVL-YID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (1050)
Q Consensus       541 ~~al~~~-p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al-~~~-p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~  615 (1050)
                      ++.++.. +-.  .++. ..-.++..+|++++|.+.+..-+ +.. +.+...-......+...+++.+-.+...+++...
T Consensus       178 ~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            4444444 111  1221 22234556677777777773322 222 2333333444556666777777777777777776


Q ss_pred             CCC
Q 001578          616 PSN  618 (1050)
Q Consensus       616 p~~  618 (1050)
                      +++
T Consensus       257 ~Dd  259 (932)
T KOG2053|consen  257 NDD  259 (932)
T ss_pred             Ccc
Confidence            665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.60  E-value=1.7e-07  Score=78.35  Aligned_cols=64  Identities=31%  Similarity=0.408  Sum_probs=51.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       590 ~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      .+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5677888888888888888888888888888888888888888888888888888888888764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.59  E-value=1.6e-07  Score=78.59  Aligned_cols=65  Identities=26%  Similarity=0.281  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 001578           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (1050)
Q Consensus        73 ~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~  137 (1050)
                      +.+|..+++.|++++|+..++++++.+|++..+++.+|.++..+|++++|+..|++++++.|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35789999999999999999999999999999999999999999999999999999988888764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.58  E-value=1.3e-07  Score=83.71  Aligned_cols=81  Identities=32%  Similarity=0.423  Sum_probs=48.3

Q ss_pred             cCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 001578          564 LANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD  641 (1050)
Q Consensus       564 ~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~  641 (1050)
                      .|+++.|+.+++++++..|.  +...++.+|.+++..|++++|+..+++ ...++.+....+.+|.++..+|++++|++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            45666666666666666663  234455566666666666666666666 555555556666666666666666666666


Q ss_pred             HHHH
Q 001578          642 YDAA  645 (1050)
Q Consensus       642 ~~~a  645 (1050)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            6553

>PRK15331 chaperone protein SicA; Provisional

Probab=98.57  E-value=9e-07  Score=86.05  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=101.2

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (1050)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  450 (1050)
                      ..+....+...+..+..|..++..|++++|..+|+-+.-.+|.+++.+..+|.++..+++|++|+..|..+..++++++.
T Consensus        27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            34455566678889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 001578          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (1050)
Q Consensus       451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~  483 (1050)
                      ..+..|.|+..+|+...|+.+|+.++. .|.+.
T Consensus       107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             ccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            999999999999999999999999998 45443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=3.6e-05  Score=89.62  Aligned_cols=281  Identities=16%  Similarity=0.073  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      -...|......|-.++|..+|++.-..        -.+-..|...|.+++|.+..+.-=.+  .-...|++.|..+...+
T Consensus       803 eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~  872 (1416)
T KOG3617|consen  803 EAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARR  872 (1416)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhc
Confidence            344566677788888888888887543        24556677778888877665431111  12456788888888888


Q ss_pred             CHHHHHHHHHHH----------HhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001578          464 ESVEAIQDLSKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (1050)
Q Consensus       464 ~~~eA~~~l~ka----------l~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l  523 (1050)
                      +.+.|+++|+++          +..+|          .+..+|...|..+...|+.+.|+.+|..+-.        |+.+
T Consensus       873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~  944 (1416)
T KOG3617|consen  873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSM  944 (1416)
T ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhh
Confidence            888888888865          22233          2345677778888888888888888877633        2333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC-------------
Q 001578          524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-------------  584 (1050)
Q Consensus       524 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~-------------  584 (1050)
                      ..+..-+|+.++|-...++     ..+..+-+.+|+.|...|++.+|+..|.+|-..      ...+             
T Consensus       945 VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen  945 VRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred             eeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence            3344444444444332222     233344455555555555555555555444211      1100             


Q ss_pred             -HHHHHHHH--------------HHHHHCCCHHHHHHHHHH----------HHhcCC-CCHHHHHHHHHHHHHccCHHHH
Q 001578          585 -SKAYHLRG--------------LLLHGLGQHKKAIKDLSS----------GLGIDP-SNIECLYLRASCYHAIGEYREA  638 (1050)
Q Consensus       585 -~~~~~~la--------------~~~~~~g~~~eAi~~l~~----------al~~~p-~~~~~~~~la~~~~~~g~~~eA  638 (1050)
                       +.-....|              .+|.+.|.+.+|++..=+          +-.++| .++..+..-+..+....+|++|
T Consensus      1020 ~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred             CchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence             00011112              233444444444432111          112244 3577778888888888999998


Q ss_pred             HHHHH------HHHHhcCC-------------------CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578          639 IKDYD------AALDLELD-------------------SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGD  688 (1050)
Q Consensus       639 ~~~~~------~al~l~p~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~  688 (1050)
                      ...+-      .|+.+..+                   .+. -...-..+-+.|.++.++|.|..|-+-|..|++
T Consensus      1100 V~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~-e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1100 VNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPN-EQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCcc-HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence            87654      44443211                   111 112234566678888888888888887777654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.53  E-value=1.1e-06  Score=85.52  Aligned_cols=109  Identities=6%  Similarity=0.027  Sum_probs=88.5

Q ss_pred             HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q 001578          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (1050)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~  623 (1050)
                      ..+.++..+..+..|.-++..|++++|...|+-....+|.+++.+..+|.++..+++|++|+..|..+..++++++...+
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            33455556777788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          624 LRASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       624 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      ..|.||..+|+.+.|+.+|+.+++ .|.+.
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            888888888888888888888887 35443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.50  E-value=3.3e-06  Score=91.12  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=92.8

Q ss_pred             cHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 001578          380 SVDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (1050)
Q Consensus       380 ~~~~~~~~a~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  452 (1050)
                      +....+..|..+ +..|+|++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|.+++...|++   ++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            356667777776 56799999999999999999988   5899999999999999999999999999988874   7788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 001578          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADI  485 (1050)
Q Consensus       453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~  485 (1050)
                      +.+|.++..+|++++|...|+++++..|+...+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            889999999999999999999999999977643

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=4.7e-05  Score=78.77  Aligned_cols=230  Identities=15%  Similarity=0.047  Sum_probs=168.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 001578          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (1050)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~  501 (1050)
                      .+-++..|+|..++..-.+.-... ...+....+.+.|..+|++...+.-....-   .....+...++.+...-++.++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            345667799999888777654433 667777888999999998876555433322   1123455566666666666666


Q ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 001578          502 AVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (1050)
Q Consensus       502 A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  579 (1050)
                      -+.-+.+.+....  .+......-|.++...|++++|+......     .+.++...-..++.++.+.+-|...++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5555555444332  23345566678899999999999888773     3455666666788899999999999999988


Q ss_pred             hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 001578          580 IDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (1050)
Q Consensus       580 ~~p~~~~~~~~la~~~~~----~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  655 (1050)
                      ++.+  ..+..+|..+..    .+++.+|.-+|+..-+..|..+..+...+.|...+|++++|...++.++..++++++.
T Consensus       166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            8665  444445555443    4578999999999999888889999999999999999999999999999999999987


Q ss_pred             HHHHHHH
Q 001578          656 FVLQCLA  662 (1050)
Q Consensus       656 ~~~~~~~  662 (1050)
                      ..++..+
T Consensus       244 L~Nliv~  250 (299)
T KOG3081|consen  244 LANLIVL  250 (299)
T ss_pred             HHHHHHH
Confidence            6655443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.45  E-value=4.1e-05  Score=79.81  Aligned_cols=190  Identities=15%  Similarity=0.153  Sum_probs=131.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---H
Q 001578          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---A  451 (1050)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  451 (1050)
                      ...+..++..|...++.|++++|+..|+.+...+|..   ..+.+.++.++++.+++++|+..+++-+.+.|.++.   +
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            4458899999999999999999999999999988875   578899999999999999999999999999988744   6


Q ss_pred             HHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001578          452 WKRRGQARAALG--------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (1050)
Q Consensus       452 ~~~la~~~~~~g--------~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l  523 (1050)
                      ++..|.++...=        -..+|+..++..+...|++.-+-.....+           ..++..+      ..--..+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~I  173 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAI  173 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHH
Confidence            677777765431        24567777888888888663221111000           0000000      1112345


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 001578          524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (1050)
Q Consensus       524 a~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~  584 (1050)
                      |..|.+.|.+..|+..++.+++..|+.   .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            666777777777777777777766554   4566666777777777777766544433334443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.45  E-value=1.1e-07  Score=101.16  Aligned_cols=107  Identities=21%  Similarity=0.300  Sum_probs=98.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHH
Q 001578           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI  107 (1050)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~  107 (1050)
                      .++.+..+...|.+...++..|++++||+.|+++|+++ +....|.+|+.+++++++...|+++|..|++++|+..+.|-
T Consensus       107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk  186 (377)
T KOG1308|consen  107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK  186 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc
Confidence            45567778888899999999999999999999999999 66677999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 001578          108 LKGCAFSALGRKEEALSVWEKGYEHALH  135 (1050)
Q Consensus       108 ~~g~~~~~lg~~~~A~~~~~~al~~~~~  135 (1050)
                      .+|.+...+|++++|..+|..+.++.-+
T Consensus       187 frg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  187 FRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            9999999999999999999999766533

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.44  E-value=5.9e-06  Score=89.22  Aligned_cols=102  Identities=17%  Similarity=0.058  Sum_probs=54.9

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHH
Q 001578          484 DILHERGIVN-FKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGH  556 (1050)
Q Consensus       484 ~~~~~lg~~~-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~  556 (1050)
                      ...+..|..+ ...|+|++|+..|+..++..|++   +.+++.+|.+|+..|++++|+..|++++...|++   +++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3444444433 33455555555555555555554   3455555555555555555555555555555443   455555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 001578          557 LTQFYQDLANSEKALECLQQVLYIDKRFS  585 (1050)
Q Consensus       557 la~~~~~~g~~~~A~~~l~~al~~~p~~~  585 (1050)
                      +|.++...|++++|...|+++++..|+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            55555555555555555555555555543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.42  E-value=5e-06  Score=94.24  Aligned_cols=119  Identities=22%  Similarity=0.267  Sum_probs=103.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Q 001578          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (1050)
Q Consensus       523 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~  602 (1050)
                      +-.++...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.+++...|.+...+...+..+...++++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            344455567788888888888777764   55668888888888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (1050)
Q Consensus       603 eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  644 (1050)
                      .|+...+++..+.|++...|+.|+.+|..+|++++|+..+..
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999966553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.41  E-value=5.6e-06  Score=93.86  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=79.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578          423 TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (1050)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A  502 (1050)
                      .++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+..++...+..+...++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3444456677777777776666553   4445666666666777777777777777776777777777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (1050)
Q Consensus       503 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  543 (1050)
                      +...++++...|.+...|+.|+.+|...|++++|+..++.+
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            77777777777777777777777777777777776665544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=0.00011  Score=85.66  Aligned_cols=205  Identities=15%  Similarity=0.045  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578          383 FRLSRGIAQVNEGKYASAISI------------FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~------------~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  450 (1050)
                      .|-.+|.......+.+-|.-+            ++++.+ +|+  +.-...|.+...+|-.++|...|.+.-..      
T Consensus       759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~------  829 (1416)
T KOG3617|consen  759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRY------  829 (1416)
T ss_pred             HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence            445555555555555444433            333332 333  23334566777889999999999987553      


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC------
Q 001578          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC----------VKLDK------  514 (1050)
Q Consensus       451 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~a----------l~~~p------  514 (1050)
                        -.+-..|...|.+++|.+..+.-=.+  .--..|++.|..+...++.+.|+++|+++          +.-+|      
T Consensus       830 --DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y  905 (1416)
T KOG3617|consen  830 --DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY  905 (1416)
T ss_pred             --HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence              35667888899999998876543222  13457889999999999999999999884          22233      


Q ss_pred             ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 001578          515 ----ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (1050)
Q Consensus       515 ----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~  590 (1050)
                          .+...|...|..+...|+.+.|+.+|..|-        -|+.+..+..-+|+.++|..+.++     ..+..+.+.
T Consensus       906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYh  972 (1416)
T KOG3617|consen  906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYH  972 (1416)
T ss_pred             HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHH
Confidence                234567777888888999999999988763        366677777888999988876654     356678899


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHh
Q 001578          591 RGLLLHGLGQHKKAIKDLSSGLG  613 (1050)
Q Consensus       591 la~~~~~~g~~~eAi~~l~~al~  613 (1050)
                      +|..|...|+..+|+..|.+|-.
T Consensus       973 laR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  973 LARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.39  E-value=7.3e-05  Score=73.01  Aligned_cols=151  Identities=17%  Similarity=0.134  Sum_probs=120.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHcCChHHHHHH
Q 001578          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALEC  573 (1050)
Q Consensus       495 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~  573 (1050)
                      +.=+++.+..-..+.+...|.. .-.+.+|..+...|++.||...|++++. +...++..+..+++..+..+++..|...
T Consensus        68 q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t  146 (251)
T COG4700          68 QKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT  146 (251)
T ss_pred             HhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence            3334555555555556666654 3457788889999999999999998875 4567788888999999999999999999


Q ss_pred             HHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578          574 LQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (1050)
Q Consensus       574 l~~al~~~p--~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  647 (1050)
                      +++..+.+|  ..+.....+|..+..+|++.+|...|+.++...|+ +++....+..+.++|+..+|..-+....+
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            999998887  34677888899999999999999999999998887 77888888999999988888776655544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.39  E-value=6.3e-06  Score=75.45  Aligned_cols=107  Identities=20%  Similarity=0.275  Sum_probs=91.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChh----HHHHHHHHHHH
Q 001578           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILKGCAFSA  115 (1050)
Q Consensus        41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~----a~~~~g~~~~~  115 (1050)
                      .++-.+-..|+.+.|++.|.++|.+. .+++.|.|||.++--.|+-++|+.++++|+++.-+..+    +|..+|.+|..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            44555667899999999999999999 77888999999999999999999999999998855443    99999999999


Q ss_pred             cCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHH
Q 001578          116 LGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (1050)
Q Consensus       116 lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~  149 (1050)
                      +|+.+.|..+|+.|-.  .+++=...+|.+++|-
T Consensus       128 ~g~dd~AR~DFe~AA~--LGS~FAr~QLV~lNPY  159 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQ--LGSKFAREQLVELNPY  159 (175)
T ss_pred             hCchHHHHHhHHHHHH--hCCHHHHHHHHhcChH
Confidence            9999999999999944  3455566677777664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.36  E-value=7.1e-06  Score=77.01  Aligned_cols=56  Identities=21%  Similarity=0.145  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHH
Q 001578          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREAIKDYD  643 (1050)
Q Consensus       588 ~~~la~~~~~~g~~~eAi~~l~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~  643 (1050)
                      +..+|..+..+|++++|+..+++++...|+   +..+...++.++...|+.++|+..+-
T Consensus        41 ~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   41 LIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            333333333444444444444433333333   23333333333334444444443333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.35  E-value=1.5e-05  Score=74.86  Aligned_cols=96  Identities=23%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q 001578          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLR  591 (1050)
Q Consensus       518 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~l  591 (1050)
                      .+++.+|.++...|+.++|+.+|++++......   ..++..+|..+..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            468899999999999999999999999975443   678999999999999999999999999999888   77888889


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHh
Q 001578          592 GLLLHGLGQHKKAIKDLSSGLG  613 (1050)
Q Consensus       592 a~~~~~~g~~~eAi~~l~~al~  613 (1050)
                      +.++...|++++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988775

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.32  E-value=0.00011  Score=76.67  Aligned_cols=189  Identities=19%  Similarity=0.082  Sum_probs=131.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 001578          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYT  521 (1050)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~  521 (1050)
                      .+..++.-|...+..|++++|...|+.+....|..   ..+...++..+++.+++++|+...++.+.+.|.++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            45677888888888888888888888888877754   56778888888888888888888888888887764   3566


Q ss_pred             HHHHHHHHcC--------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578          522 YLGLALSSIG--------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (1050)
Q Consensus       522 ~la~~~~~~g--------~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~  593 (1050)
                      ..|.+++..=        -..+|+..++..+...|++.-+-.....           +..++..+      +.--...|.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~Iar  175 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAIAR  175 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHHHH
Confidence            6666655421        2346677777777777776322111111           01111111      122345788


Q ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          594 LLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       594 ~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      .|.+.|.+..|+.-++.+++..|+.   .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            8999999999999999999887665   46888899999999999998876655555555553

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=1.1e-05  Score=79.44  Aligned_cols=112  Identities=27%  Similarity=0.331  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (1050)
                      ++.+-.-|.-++..|+|++|..-|..+|...|..+     ..|.+.|.++++++.++.|+..+.++++++|.+..++.+.
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            45566778899999999999999999999988753     4677889999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (1050)
Q Consensus       456 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~  492 (1050)
                      |.+|..+..+++|++.|.++++.+|....+....+.+
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            9999999999999999999999999776655444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.31  E-value=0.00024  Score=84.62  Aligned_cols=226  Identities=16%  Similarity=0.095  Sum_probs=173.9

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (1050)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  505 (1050)
                      ...+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            34688999999999999999999999999999999999999999888888778888888999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHHHcCCh---------HHHHHHHH
Q 001578          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH-LTQFYQDLANS---------EKALECLQ  575 (1050)
Q Consensus       506 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~-la~~~~~~g~~---------~~A~~~l~  575 (1050)
                      |++++..+|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|..+..+.. +..+.......         .-|...++
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~  178 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ  178 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence            9999999999 8888889999999998887666666666678887654433 33333333332         23555566


Q ss_pred             HHHhhC-CCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHH-h-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          576 QVLYID-KRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGL-G-IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       576 ~al~~~-p~~~-~~~~~la~~~~~~g~~~eAi~~l~~al-~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      +.++.. +-.. .-....-.++..+|++++|...+..-+ + ..+.+..........+...+++.+-.+...+++...+|
T Consensus       179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND  258 (932)
T ss_pred             HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence            666555 2111 123334456778899999999994332 3 33444444455667777888898888888888888888


Q ss_pred             C
Q 001578          652 S  652 (1050)
Q Consensus       652 ~  652 (1050)
                      +
T Consensus       259 d  259 (932)
T KOG2053|consen  259 D  259 (932)
T ss_pred             c
Confidence            7

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.31  E-value=6.6e-05  Score=73.33  Aligned_cols=146  Identities=10%  Similarity=0.102  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (1050)
Q Consensus       464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~  542 (1050)
                      +.+....-..+.++..| ...-.+.+|..+.+.|++.+|..+|++++. +..+++..+..++...+..+++..|...+++
T Consensus        71 dP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          71 DPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             ChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            44445555555555555 334556677777777777777777777765 3556677777777777777777777777777


Q ss_pred             HHHhCcCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578          543 AIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (1050)
Q Consensus       543 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a  611 (1050)
                      ..+.+|..  ++....+|..+...|++.+|...|+.++...|+ +.+....+..+..+|+..+|...+...
T Consensus       150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            77776643  566677777777777777777777777777765 566666777777777777666555443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.0018  Score=72.24  Aligned_cols=323  Identities=15%  Similarity=0.092  Sum_probs=209.6

Q ss_pred             HHHHHhhccCC---CcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHH
Q 001578          368 FCVTRISKSKS---ISVDFRLSRGIAQV-NEGKYASAISIFDQILKED---PMY----PEALIGRGTARAFQR-ELEAAI  435 (1050)
Q Consensus       368 ~~~~~~~~~~~---~~~~~~~~~a~~~~-~~g~~~~Ai~~~~~al~~~---p~~----~~a~~~la~~~~~~g-~~~~A~  435 (1050)
                      .|+..+....+   ..+...+.+|..++ ...+++.|...++++..+.   |..    .++...++.+|.... .+..|.
T Consensus        30 kClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~K  109 (629)
T KOG2300|consen   30 KCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAK  109 (629)
T ss_pred             HHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHH
Confidence            34444444333   34566777887665 5678999999999998653   333    356778899998877 888999


Q ss_pred             HHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------------CCCCHH----
Q 001578          436 SDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALEF-----------------------EPNSAD----  484 (1050)
Q Consensus       436 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~~-----------------------~p~~~~----  484 (1050)
                      ..+.+++++....+    ...+.+++++.-..++..|++.+.-..+.                       .+++.+    
T Consensus       110 alLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~l  189 (629)
T KOG2300|consen  110 ALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKL  189 (629)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            99999999977654    45678999999999999999875321111                       111110    


Q ss_pred             -----------------------HHHHHH-HHHHHcCCHHHHHHHHHHH---HHh-CCC-----------C-H-------
Q 001578          485 -----------------------ILHERG-IVNFKFKDFNAAVEDLSAC---VKL-DKE-----------N-K-------  517 (1050)
Q Consensus       485 -----------------------~~~~lg-~~~~~~g~~~~A~~~l~~a---l~~-~p~-----------~-~-------  517 (1050)
                                             .+..+- ..|...|+...+...+++.   +.. .+.           + +       
T Consensus       190 l~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlp  269 (629)
T KOG2300|consen  190 LQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLP  269 (629)
T ss_pred             HHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhcc
Confidence                                   111111 1233445555444444432   211 110           0 0       


Q ss_pred             ----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCcC------cH--------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578          518 ----SAYTYLGLA--LSSIGEYKKAEEAHLKAIQLDRN------FL--------EAWGHLTQFYQDLANSEKALECLQQV  577 (1050)
Q Consensus       518 ----~~~~~la~~--~~~~g~~~eA~~~l~~al~~~p~------~~--------~~~~~la~~~~~~g~~~~A~~~l~~a  577 (1050)
                          .++..+-.+  -...|-+++|.++-++++.....      ..        ..+-++..+-.-.|++.+|++....+
T Consensus       270 keqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm  349 (629)
T KOG2300|consen  270 KEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDM  349 (629)
T ss_pred             HhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                011111111  12356678888887777765221      11        22345566667789999999988877


Q ss_pred             Hhh---CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578          578 LYI---DKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-N--IECLYLRASCYHAIGEYREAIKDYDA  644 (1050)
Q Consensus       578 l~~---~p~-------~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~-~--~~~~~~la~~~~~~g~~~eA~~~~~~  644 (1050)
                      .+.   .|.       .+.++..+|.....-+.++.|...|..|.++... +  ..+-.++|.+|...|+-+.-.+.++.
T Consensus       350 ~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~  429 (629)
T KOG2300|consen  350 KNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL  429 (629)
T ss_pred             HHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh
Confidence            654   333       2456778888888899999999999999887543 2  33556789999998876665555554


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 001578          645 ALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (1050)
Q Consensus       645 al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~  690 (1050)
                      .-..+..........+..+|-.|...+..+++++|...+...++..
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            4333333344456677889999999999999999999998888766

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=0.00012  Score=81.29  Aligned_cols=274  Identities=15%  Similarity=0.052  Sum_probs=176.0

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 001578          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQIL-KEDPM--------YPEALIGRGTARAFQRELEAAISDFTEAIQS--  444 (1050)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al-~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~--  444 (1050)
                      ...+++.+++..+..++..|+|.+|.+.+...- ...|.        ....+.++|.++++.|.|..+..+|.+|++-  
T Consensus       235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            345778899999999999999999999876542 22332        1234578999999999999999999999961  


Q ss_pred             -------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 001578          445 -------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAVED  505 (1050)
Q Consensus       445 -------~p---------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~  505 (1050)
                             .|         ...++.++.|..|...|+.-.|.++|.++......++.+|..++.++....+   .++....
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s  394 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSS  394 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence                   11         2356889999999999999999999999999999999999999998875321   1111111


Q ss_pred             HHH--------------HH--Hh-----CCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-----------
Q 001578          506 LSA--------------CV--KL-----DKEN---KSAYTYLGLALSS-----IGEYKKAEEAHLKAIQ-----------  545 (1050)
Q Consensus       506 l~~--------------al--~~-----~p~~---~~~~~~la~~~~~-----~g~~~eA~~~l~~al~-----------  545 (1050)
                      ..+              .+  +.     .+..   +..-..+|.++.+     ...-..--..+.-+..           
T Consensus       395 ~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~  474 (696)
T KOG2471|consen  395 LSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHE  474 (696)
T ss_pred             cccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCC
Confidence            100              00  00     0000   0111112222211     1100000000000000           


Q ss_pred             -----------------hCc-Cc-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-
Q 001578          546 -----------------LDR-NF-----------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-  595 (1050)
Q Consensus       546 -----------------~~p-~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-  595 (1050)
                                       -.| ..           ..++.+.+.+-.++|+.-.|+..-++.++. |+...++..+|.+| 
T Consensus       475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYA  553 (696)
T KOG2471|consen  475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYA  553 (696)
T ss_pred             CCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHH
Confidence                             001 11           134556677778899999999999998865 44456666665555 


Q ss_pred             ----HHCCCHHHHHHHHHHHH------h-----------------cCCC----------C-----HHHHHHHHHHHHHcc
Q 001578          596 ----HGLGQHKKAIKDLSSGL------G-----------------IDPS----------N-----IECLYLRASCYHAIG  633 (1050)
Q Consensus       596 ----~~~g~~~eAi~~l~~al------~-----------------~~p~----------~-----~~~~~~la~~~~~~g  633 (1050)
                          ..+.+..+|..++.--+      .                 ++|.          .     ...++++|.+|.-+|
T Consensus       554 aEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~  633 (696)
T KOG2471|consen  554 AEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQG  633 (696)
T ss_pred             HHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhc
Confidence                45778888887665421      0                 0111          1     136789999999999


Q ss_pred             CHHHHHHHHHHHHHhcC
Q 001578          634 EYREAIKDYDAALDLEL  650 (1050)
Q Consensus       634 ~~~eA~~~~~~al~l~p  650 (1050)
                      ++++|..++..|..+-|
T Consensus       634 ~~dqAk~ll~~aatl~h  650 (696)
T KOG2471|consen  634 HHDQAKSLLTHAATLLH  650 (696)
T ss_pred             ccHHHHHHHHHHHHhhh
Confidence            99999999999998877

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=6.7e-05  Score=75.97  Aligned_cols=144  Identities=15%  Similarity=0.181  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCC------
Q 001578          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK------AYHLRGLLLHGL-GQHKKAIKDLSSGLGIDPSN------  618 (1050)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~------~~~~la~~~~~~-g~~~eAi~~l~~al~~~p~~------  618 (1050)
                      ..|...+.+|. ..+..+|+.++++++++..+...      .+..+|.+|... .++++|+.+|+++-+.....      
T Consensus        75 t~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA  153 (288)
T KOG1586|consen   75 TTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA  153 (288)
T ss_pred             HHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence            34444455554 44778888888888777654432      345788888664 88999999999987764432      


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                      ..++...|..-..+++|.+|+..|++.....-+++-..+..-..++..|+|+....+.-.+...+++-.+++|.|.+-
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            246667777888899999999999999988888776555555667788888888788877888888888999999866

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.26  E-value=2.8e-06  Score=71.63  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=47.1

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (1050)
Q Consensus       392 ~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (1050)
                      +..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777777666655554

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.23  E-value=4.1e-06  Score=71.76  Aligned_cols=64  Identities=27%  Similarity=0.325  Sum_probs=54.6

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHh
Q 001578           76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (1050)
Q Consensus        76 a~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~  139 (1050)
                      +.+|++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+.+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            4578888899999999999999999988899999999999999999999999998888866543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.20  E-value=3.4e-05  Score=81.17  Aligned_cols=104  Identities=22%  Similarity=0.289  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ  457 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  457 (1050)
                      .|..|..++..|+|..|...|..-++..|+.   +.+++.||.+++.+|+++.|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999886   6899999999999999999999999999988765   688999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 001578          458 ARAALGESVEAIQDLSKALEFEPNSADILH  487 (1050)
Q Consensus       458 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~  487 (1050)
                      +...+|+.++|...|+++++..|+...+..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999999999997765543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.19  E-value=4.3e-05  Score=72.90  Aligned_cols=86  Identities=21%  Similarity=0.223  Sum_probs=75.1

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW  452 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~  452 (1050)
                      ..+..++..|...+..|+|.+|++.|+.+....|..   ..+.+.+|.+|+..+++++|+..+++-++++|.++   .++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            457889999999999999999999999999988765   57889999999999999999999999999999874   477


Q ss_pred             HHHHHHHHHcCC
Q 001578          453 KRRGQARAALGE  464 (1050)
Q Consensus       453 ~~la~~~~~~g~  464 (1050)
                      +..|.+++.+..
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            888888877654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.19  E-value=7.7e-06  Score=70.04  Aligned_cols=64  Identities=28%  Similarity=0.475  Sum_probs=50.9

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 001578          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (1050)
Q Consensus       592 a~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  655 (1050)
                      ..+|...+++++|+.++++++.++|+++..++.+|.++..+|++.+|++.|+++++..|+++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            4567778888888888888888888888888888888888888888888888888888877664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0025  Score=65.82  Aligned_cols=226  Identities=13%  Similarity=0.069  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------------------GEAWKRRGQARAALGESVEAIQDLSKA  475 (1050)
Q Consensus       415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~eA~~~l~ka  475 (1050)
                      ...|...-.++.++..+++|..-+...-+++..+                   .......|.+....|+..+.+.-+...
T Consensus        69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L  148 (366)
T KOG2796|consen   69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL  148 (366)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3444445555555666666655554433332111                   011223455555566666665554443


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHH
Q 001578          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAW  554 (1050)
Q Consensus       476 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~~  554 (1050)
                      ...       ...+-.........+..++.+++-+      ..+.+.+..++...|.|.-....+.+.++.+ |..+...
T Consensus       149 ~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~  215 (366)
T KOG2796|consen  149 KTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL  215 (366)
T ss_pred             HHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence            321       1111222222233355555555543      3466778888888999999999999999988 5667888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001578          555 GHLTQFYQDLANSEKALECLQQVLYID------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (1050)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~  628 (1050)
                      ..+|.+..+.|+.+.|..+|++.-+..      .....+..+.+.++.-.+++.+|...|.+++..+|.++.+-.+.|.|
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            899999999999999999998654332      23345677888899999999999999999999999999999999999


Q ss_pred             HHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          629 YHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       629 ~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      +..+|+..+|++.++.+++..|...
T Consensus       296 llYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999753

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.17  E-value=5.4e-06  Score=69.90  Aligned_cols=57  Identities=32%  Similarity=0.410  Sum_probs=26.3

Q ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       597 ~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      ..|++++|+..|++++..+|++.++++.+|.+|...|++++|...+++++..+|+++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            344444444444444444444444444444444444444444444444444444443

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00036  Score=70.77  Aligned_cols=139  Identities=15%  Similarity=0.060  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HH
Q 001578          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRF------SK  586 (1050)
Q Consensus       520 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~l~~al~~~p~~------~~  586 (1050)
                      |...+.+| +.++.++|+.++++++++..+..      ..+..+|.+|... .++++|+.+|+++-+.....      ..
T Consensus        77 YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK  155 (288)
T KOG1586|consen   77 YVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK  155 (288)
T ss_pred             HHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence            33334444 44588888888888888765542      3345788888765 89999999999998765432      23


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001578          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (1050)
Q Consensus       587 ~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~  659 (1050)
                      .+...+..-...++|.+|+..|++.....-++.       +.++.-|.|++...+.-.+...+++..+++|...+..-..
T Consensus       156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck  235 (288)
T KOG1586|consen  156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK  235 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence            566677777889999999999999887655553       3456678888888999999999999999999887755433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=5.6e-05  Score=79.60  Aligned_cols=100  Identities=23%  Similarity=0.246  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHH
Q 001578          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQ  559 (1050)
Q Consensus       486 ~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---~~~~~~la~  559 (1050)
                      .++.|.-++..|+|..|...|...++..|+.   +++++.||.+++.+|++++|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            3344444444444444444444444444433   2344444444444444444444444444444333   344444444


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCH
Q 001578          560 FYQDLANSEKALECLQQVLYIDKRFS  585 (1050)
Q Consensus       560 ~~~~~g~~~~A~~~l~~al~~~p~~~  585 (1050)
                      +..++|+.++|...|+++++..|+..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            44444444444444444444444433

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=0.0005  Score=76.42  Aligned_cols=263  Identities=18%  Similarity=0.173  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          383 FRLSRGIAQVNEGKYASAISIFDQILKE---------DP---------MYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~---------~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  444 (1050)
                      ++..+|.++++.|.|.-+..+|.+++..         .|         ...+.+++.|..|...|+.-.|.++|.++...
T Consensus       285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v  364 (696)
T KOG2471|consen  285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV  364 (696)
T ss_pred             eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence            4468899999999999999999999951         11         23578899999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------HHhh-------CCCC---HHHHHHHHHHHHHcC
Q 001578          445 NPSAGEAWKRRGQARAALGE---SVEAIQDLSK--------------ALEF-------EPNS---ADILHERGIVNFKFK  497 (1050)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~---~~eA~~~l~k--------------al~~-------~p~~---~~~~~~lg~~~~~~g  497 (1050)
                      ...++..|.++|.+.+...+   .++......+              .+-+       .+..   +..-..++.++.+.+
T Consensus       365 fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrna  444 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNA  444 (696)
T ss_pred             HhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhh
Confidence            99999999999999875321   1111111111              0000       0000   111112222222111


Q ss_pred             --------CHHHHHHHHHHHHH-------------------------hCC-CC-----------HHHHHHHHHHHHHcCC
Q 001578          498 --------DFNAAVEDLSACVK-------------------------LDK-EN-----------KSAYTYLGLALSSIGE  532 (1050)
Q Consensus       498 --------~~~~A~~~l~~al~-------------------------~~p-~~-----------~~~~~~la~~~~~~g~  532 (1050)
                              ++..-+..-...-+                         -.| ..           ..++.+.+.+-..+|+
T Consensus       445 l~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd  524 (696)
T KOG2471|consen  445 LYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGD  524 (696)
T ss_pred             hhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    00000000000000                         001 11           1234556777788999


Q ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHH-----HHcCChHHHHHHHHHHHh-----------------------hCC--
Q 001578          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFY-----QDLANSEKALECLQQVLY-----------------------IDK--  582 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~~~l~~al~-----------------------~~p--  582 (1050)
                      .-.|+..-.+.++. |+...++..+|.+|     +-+.+..+|...+.--+-                       ++|  
T Consensus       525 ~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~  603 (696)
T KOG2471|consen  525 PIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPST  603 (696)
T ss_pred             hhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcC
Confidence            99999999988875 45556666666554     456777777766654210                       011  


Q ss_pred             ----C----C-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001578          583 ----R----F-----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (1050)
Q Consensus       583 ----~----~-----~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al  646 (1050)
                          +    .     ...++++|.++.-+|++++|..++..|..+-+  .++++....-.+-..+|+...|...+++.-
T Consensus       604 ~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~  682 (696)
T KOG2471|consen  604 GRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT  682 (696)
T ss_pred             CCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence                0    1     12478999999999999999999999988877  456676666667778999999998887753

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.05  E-value=0.0001  Score=70.38  Aligned_cols=104  Identities=17%  Similarity=0.099  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 001578          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYL  624 (1050)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~---~~~~~  624 (1050)
                      +..++.-|...++.|+|++|++.|+.+....|..   ..+...++.+|+..+++++|+..+++.++++|.++   .+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4455566666666666666666666666665533   35566666666666777777777776666666653   45666


Q ss_pred             HHHHHHHccC---------------HHHHHHHHHHHHHhcCCCHH
Q 001578          625 RASCYHAIGE---------------YREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       625 la~~~~~~g~---------------~~eA~~~~~~al~l~p~~~~  654 (1050)
                      .|.++..+..               ..+|...|++.+...|++..
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            6666666655               77999999999999999864

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.0029  Score=65.36  Aligned_cols=226  Identities=15%  Similarity=0.115  Sum_probs=163.3

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------------------PEALIGRGTARAFQRELEAAISDFTE  440 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-------------------~~a~~~la~~~~~~g~~~~A~~~~~~  440 (1050)
                      ....|-.+-.++.+...+++|..-+...-+.+..+                   .......|.+....|+..+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            45566666777778888888887776655443211                   12234556677778888877766655


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q 001578          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSA  519 (1050)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~-p~~~~~  519 (1050)
                      ....       ...+-.........+..++..++-+      ..+.+.+..++.-.|.|.-.+..+.+.++.+ |..+..
T Consensus       148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L  214 (366)
T KOG2796|consen  148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL  214 (366)
T ss_pred             HHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence            4321       1112222222223355555555543      3466778888888889999999999999888 557777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578          520 YTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (1050)
Q Consensus       520 ~~~la~~~~~~g~~~eA~~~l~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~  593 (1050)
                      ...+|.+..+.|+.+.|..++++.-+..      ....-+..+.+.+|.-.+++.+|...+.+++..+|.++.+-.+.|.
T Consensus       215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL  294 (366)
T KOG2796|consen  215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL  294 (366)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence            8889999999999999998888554332      2234566677888888899999999999999999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCC
Q 001578          594 LLHGLGQHKKAIKDLSSGLGIDPSN  618 (1050)
Q Consensus       594 ~~~~~g~~~eAi~~l~~al~~~p~~  618 (1050)
                      |+...|+..+|++.++.++...|..
T Consensus       295 cllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  295 CLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999998874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.02  E-value=2e-05  Score=88.66  Aligned_cols=69  Identities=25%  Similarity=0.290  Sum_probs=59.7

Q ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC---LYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       580 ~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      .+|+++.+++++|.+|..+|+|++|+..|+++++++|++.++   |+++|.+|..+|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            457788888888988888899999999999999988888754   889999999999999999999999887

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.00  E-value=0.00023  Score=65.50  Aligned_cols=98  Identities=24%  Similarity=0.301  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHH
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQAR  459 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  459 (1050)
                      +-..|..+...|+.+.|++.|.+++...|..+.+|.+.+..+..+|+.++|++.+++++++....    ..++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            44568888899999999999999999999999999999999999999999999999999986554    45788899999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCC
Q 001578          460 AALGESVEAIQDLSKALEFEPN  481 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p~  481 (1050)
                      ..+|+.+.|...|+.+-++...
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCH
Confidence            9999999999999988877643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.93  E-value=7.5e-05  Score=73.42  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 001578          601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE----------YREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL  670 (1050)
Q Consensus       601 ~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~  670 (1050)
                      ++.|.+.++.....+|.+++.+++-|.++..+.+          +++|+.-|++|+.++|+..++++..+.++...|...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            3556666666666666666666666655554432          456677777777777777777777777777666543


Q ss_pred             H----HhcCHHHHHHHHHHhhccCCCCHHHH
Q 001578          671 Y----TASKINSEFCWFDIDGDIDPLFKEYW  697 (1050)
Q Consensus       671 ~----~~~~~~~A~~~l~~a~~l~p~~~e~w  697 (1050)
                      -    ....|++|..+|+++.+.+|++..|+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~  117 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYR  117 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            2    23568999999999999999999986

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.92  E-value=6.3e-05  Score=84.76  Aligned_cols=68  Identities=28%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 001578          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA---WGHLTQFYQDLANSEKALECLQQVLYI  580 (1050)
Q Consensus       513 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~l~~al~~  580 (1050)
                      +|+++.+++++|.+|+..|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34445555555555555555555555555555555555432   555555555555555555555555543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.00062  Score=72.37  Aligned_cols=161  Identities=14%  Similarity=0.053  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHH
Q 001578          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVN  493 (1050)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p~~---~~~~~~lg~~~  493 (1050)
                      ....+.+....|++.+|....++.++..|.+.-++..--.++...|+...-...+++.+.. +++.   ..+.-.++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3444556667788889989999999999999888888888889999999999999998877 6655   44555677778


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHH
Q 001578          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEK  569 (1050)
Q Consensus       494 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~  569 (1050)
                      ...|-|++|.+..++++++++.+.-+...++.++...|++.++.+...+.-..-...    ..-|...|.++.+.+.|+.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~  265 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK  265 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence            889999999999999999999999999999999999999999998887653322211    2334567788888899999


Q ss_pred             HHHHHHHHH
Q 001578          570 ALECLQQVL  578 (1050)
Q Consensus       570 A~~~l~~al  578 (1050)
                      |+++|.+-+
T Consensus       266 aleIyD~ei  274 (491)
T KOG2610|consen  266 ALEIYDREI  274 (491)
T ss_pred             HHHHHHHHH
Confidence            999998765

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.004  Score=63.85  Aligned_cols=69  Identities=12%  Similarity=-0.002  Sum_probs=44.4

Q ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQS  444 (1050)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~  444 (1050)
                      .....+..+..-+.++...++|++|..++.++.+-..++      +.++-..|........+.++..+|++|..+
T Consensus        26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333445666677777778888888888888887544333      234444555555666677777777776543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.86  E-value=0.00011  Score=72.32  Aligned_cols=98  Identities=15%  Similarity=0.211  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al  612 (1050)
                      ++.|.+.++.....+|.+++.+++.|.++.++.++...-+.                        ..-+++|+.-|++|+
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es------------------------~~miedAisK~eeAL   62 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPES------------------------KKMIEDAISKFEEAL   62 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHH------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchH------------------------HHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666554333110000                        012456667777777


Q ss_pred             hcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhcCCCHH
Q 001578          613 GIDPSNIECLYLRASCYHAIGE-----------YREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~-----------~~eA~~~~~~al~l~p~~~~  654 (1050)
                      .++|+..++++.+|.+|..++.           |++|..+|++|.+.+|++..
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            7777777777777777765543           78899999999999999854

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00091  Score=71.17  Aligned_cols=161  Identities=16%  Similarity=0.051  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHH
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA---GEAWKRRGQAR  459 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~  459 (1050)
                      ....+..+...|++.+|...++++++..|.+.-++..--.+++..|+.+.-...+++++.. +++.   ..+.-.++-.+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3445667788899999999999999999999999988889999999999999999999877 6655   45566778888


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHH
Q 001578          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSSIGEYKK  535 (1050)
Q Consensus       460 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~e  535 (1050)
                      ...|-|++|.+..++++++++.+..+...++.++...+++.++.++..+.-..-...    ..-|...|.++..-+.|+.
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~  265 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK  265 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence            999999999999999999999999999999999999999999999987754332211    1234456778888899999


Q ss_pred             HHHHHHHHH
Q 001578          536 AEEAHLKAI  544 (1050)
Q Consensus       536 A~~~l~~al  544 (1050)
                      |++.|.+-+
T Consensus       266 aleIyD~ei  274 (491)
T KOG2610|consen  266 ALEIYDREI  274 (491)
T ss_pred             HHHHHHHHH
Confidence            999998754

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.83  E-value=0.063  Score=61.31  Aligned_cols=318  Identities=12%  Similarity=0.063  Sum_probs=175.8

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001578          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (1050)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  450 (1050)
                      .+.++.+|.+.+.|+.+-..+..+ .++++.+.|++.+...|..+.+|.......+...+|+.....|.+++..--+ .+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence            344678999999999999888776 9999999999999999999999999999999999999999999998864322 33


Q ss_pred             HHHH-HHHHHHHcCCHHHHHHHHHHHH----h---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhC
Q 001578          451 AWKR-RGQARAALGESVEAIQDLSKAL----E---FEPNSADILHERGIVNF---------KFKDFNAAVEDLSACVKLD  513 (1050)
Q Consensus       451 ~~~~-la~~~~~~g~~~eA~~~l~kal----~---~~p~~~~~~~~lg~~~~---------~~g~~~~A~~~l~~al~~~  513 (1050)
                      .|.. +..+....|+...+....-++.    .   .++....+|...+..+.         ...+.+.-...|++++..-
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP  167 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP  167 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence            3322 3333333444333333322222    2   24444445554444332         2224445556666665432


Q ss_pred             CCCHH-HHH-------------HHHHHHHHcCCHHHHHHH----------------------------------------
Q 001578          514 KENKS-AYT-------------YLGLALSSIGEYKKAEEA----------------------------------------  539 (1050)
Q Consensus       514 p~~~~-~~~-------------~la~~~~~~g~~~eA~~~----------------------------------------  539 (1050)
                      -.+.+ .|.             ..-.+......|..|...                                        
T Consensus       168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE  247 (656)
T KOG1914|consen  168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE  247 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence            22211 000             000111111222333333                                        


Q ss_pred             --------------------HHHHHHhCcCcHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhhCC-CC
Q 001578          540 --------------------HLKAIQLDRNFLEAWGHLTQFYQDLAN--------------SEKALECLQQVLYIDK-RF  584 (1050)
Q Consensus       540 --------------------l~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~al~~~p-~~  584 (1050)
                                          |++++..-+-.+++|+..+..+...++              .+++..+|++++.... .+
T Consensus       248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~  327 (656)
T KOG1914|consen  248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN  327 (656)
T ss_pred             hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence                                333333334445555554444444444              4566666666654322 22


Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001578          585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQC  660 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g---~~~eAi~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~  660 (1050)
                      ...++.++..-...-   .++..-.++++++.+...++ -++..+-..-.+..-.+.|...|.+|-+..-...+.++..+
T Consensus       328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A  407 (656)
T KOG1914|consen  328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA  407 (656)
T ss_pred             HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence            233333333322221   24455555666555433222 23444444444555566677777777654433322222211


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHHH
Q 001578          661 LAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEY  696 (1050)
Q Consensus       661 ~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e~  696 (1050)
                            -+.++..++..-|+..|+..+...++.++|
T Consensus       408 ------~mEy~cskD~~~AfrIFeLGLkkf~d~p~y  437 (656)
T KOG1914|consen  408 ------LMEYYCSKDKETAFRIFELGLKKFGDSPEY  437 (656)
T ss_pred             ------HHHHHhcCChhHHHHHHHHHHHhcCCChHH
Confidence                  123456688888999998888888888877

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.80  E-value=2.2e-05  Score=68.14  Aligned_cols=63  Identities=29%  Similarity=0.510  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C-C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGID---P-S---NIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       586 ~~~~~la~~~~~~g~~~eAi~~l~~al~~~---p-~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      .++.++|.+|..+|++++|+.+|++++.+.   + +   ...++.++|.++..+|++++|++++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            445555555555555555555555555431   1 1   1345556666666666666666666666554

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.78  E-value=5.8e-05  Score=84.29  Aligned_cols=106  Identities=22%  Similarity=0.066  Sum_probs=91.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHh---hCHHHHHHHHHHHHHhCCCChh
Q 001578           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQ  104 (1050)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-~~~~~~~nra~~~~~~---~~~~~Ai~~~~~Al~l~P~~~~  104 (1050)
                      .-++.+.+...+.+++..|-.+.+..||..|.+++... ....+|.|||.++++.   |+.-.|+.+|..|+.+||...+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k  446 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK  446 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence            44555556666789999999999999999999999998 5566699999999985   4888999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 001578          105 AYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (1050)
Q Consensus       105 a~~~~g~~~~~lg~~~~A~~~~~~al~~~~  134 (1050)
                      ||++++.++..++++.+|++....+.-..|
T Consensus       447 ah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  447 AHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            999999999999999999988776643344

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.74  E-value=0.0025  Score=72.12  Aligned_cols=192  Identities=17%  Similarity=0.124  Sum_probs=119.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 001578          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (1050)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~  498 (1050)
                      ..+..-..+..+.+.-++...+|++++|+.+++|..+|.-.  ..-..+|.++|+++++......    .........|.
T Consensus       172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~  245 (539)
T PF04184_consen  172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGH  245 (539)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccc
Confidence            34444555678888899999999999999988887776532  2346788888888887643211    11111111111


Q ss_pred             HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCChHHHHHHH
Q 001578          499 FNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECL  574 (1050)
Q Consensus       499 ~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l  574 (1050)
                      .-+       .......+  ..+...+|.+..++|+.++|++.++..++..|.  +..++.++..++..++.|.++...+
T Consensus       246 ~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  246 FWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             hhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            111       11111111  344567888888888888888888888887765  3567888888888888888888888


Q ss_pred             HHHHhh-CCCCHHHHHHHHHHHHH-CCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q 001578          575 QQVLYI-DKRFSKAYHLRGLLLHG-LGQ---------------HKKAIKDLSSGLGIDPSNIECLY  623 (1050)
Q Consensus       575 ~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eAi~~l~~al~~~p~~~~~~~  623 (1050)
                      .+.-++ -|..+...+..|.+..+ .++               -..|++.+.+|++.+|.-+..+.
T Consensus       319 ~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  319 AKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            775333 24455555554444322 111               12356677777777777665443

The molecular function of this protein is uncertain.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0048  Score=63.95  Aligned_cols=234  Identities=16%  Similarity=0.226  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 001578          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK-KAEEAHLKA  543 (1050)
Q Consensus       466 ~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~-eA~~~l~~a  543 (1050)
                      ..|+.+...++.++|.+-.+|...-.++..++ +..+-++++.+.++-+|.+..+|...-.+....|++. .-++..+.+
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~  139 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM  139 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence            33444555555555555544444444443332 3444455555555555555555555555555555554 445555555


Q ss_pred             HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC-----CHHHHHHHHHHHHhcCCC
Q 001578          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG-----QHKKAIKDLSSGLGIDPS  617 (1050)
Q Consensus       544 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g-----~~~eAi~~l~~al~~~p~  617 (1050)
                      +..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.+|..+-.+... .|     ..+.-+.+..+.+.+.|+
T Consensus       140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~  219 (318)
T KOG0530|consen  140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN  219 (318)
T ss_pred             HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence            555555555555555555555555555555555555544333333322111111 11     123344555556666666


Q ss_pred             CHHHHHHHHHHHHH-cc--CHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHhh-cc
Q 001578          618 NIECLYLRASCYHA-IG--EYREAIKDYDAAL-DLELDSMEKFVLQCLAFYQKEIALYTASKI---NSEFCWFDIDG-DI  689 (1050)
Q Consensus       618 ~~~~~~~la~~~~~-~g--~~~eA~~~~~~al-~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~---~~A~~~l~~a~-~l  689 (1050)
                      +..+|..|.-++.. .|  ...+-.......+ ...-.+|.....+.. .|......+..+.-   .+|...++... +.
T Consensus       220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d-~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~  298 (318)
T KOG0530|consen  220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLD-LYAEDALAYKSSAEELARKAVKLYEDLAIKV  298 (318)
T ss_pred             CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHH-HHHHHHhhccccchHHHHHHHHHHHHHhhcc
Confidence            66666666655554 33  1122222222222 222222322211111 11111111222222   24666665544 89


Q ss_pred             CCCCHHHHHhh
Q 001578          690 DPLFKEYWCKR  700 (1050)
Q Consensus       690 ~p~~~e~w~~r  700 (1050)
                      ||--+.||+++
T Consensus       299 DpiR~nyW~~~  309 (318)
T KOG0530|consen  299 DPIRKNYWRHK  309 (318)
T ss_pred             CcHHHHHHHHH
Confidence            99999999766

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.73  E-value=0.18  Score=58.84  Aligned_cols=329  Identities=10%  Similarity=0.032  Sum_probs=213.5

Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC
Q 001578          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSNPS  447 (1050)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~-~~~~~g~~~~A~~~~~~al~~~p~  447 (1050)
                      .+...+...|..-..|-.-|..-.+.|..+.+.+.|++++.--|.....|...-. +--..|+.+.-...|++|......
T Consensus        67 ~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~  146 (577)
T KOG1258|consen   67 VYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL  146 (577)
T ss_pred             HHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence            4566677889989999999999999999999999999999999987777765433 333567788888888888877654


Q ss_pred             c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH----------------------HH-HHHH-------
Q 001578          448 A---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE----------------------RG-IVNF-------  494 (1050)
Q Consensus       448 ~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~----------------------lg-~~~~-------  494 (1050)
                      +   ...|-.+-..-..++++..-...|++.++..-.....++.                      +. ....       
T Consensus       147 dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~  226 (577)
T KOG1258|consen  147 DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHS  226 (577)
T ss_pred             chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccc
Confidence            3   2233333333345556666666666655542111110000                      00 0000       


Q ss_pred             ----------------HcCCHHHHHHHHHH------------------------HHHh-----CCC---CHHHHHHHHHH
Q 001578          495 ----------------KFKDFNAAVEDLSA------------------------CVKL-----DKE---NKSAYTYLGLA  526 (1050)
Q Consensus       495 ----------------~~g~~~~A~~~l~~------------------------al~~-----~p~---~~~~~~~la~~  526 (1050)
                                      ..+.++++...+.+                        .++.     .|.   ....|......
T Consensus       227 ~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf  306 (577)
T KOG1258|consen  227 QEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF  306 (577)
T ss_pred             cChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence                            00111222211111                        1111     111   12345555666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Q 001578          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAI  605 (1050)
Q Consensus       527 ~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~eAi  605 (1050)
                      -...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++. |..+.+...-+.+-...|++..|.
T Consensus       307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~  386 (577)
T KOG1258|consen  307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK  386 (577)
T ss_pred             hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence            6778888888888888888777788888888888888888888888888777764 566677777777788888899999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhcCHHHHHH
Q 001578          606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK---DYDAALDLELDSMEKFVLQCLAFYQKEIAL-YTASKINSEFC  681 (1050)
Q Consensus       606 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~---~~~~al~l~p~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~  681 (1050)
                      ..+++...-.|+..++-...+......|+.+.+..   ++.....-.. +..   .....+.+..... .-.++.+.|..
T Consensus       387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~-~~~---i~~~l~~~~~r~~~~i~~d~~~a~~  462 (577)
T KOG1258|consen  387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE-NNG---ILEKLYVKFARLRYKIREDADLARI  462 (577)
T ss_pred             HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc-Ccc---hhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99988888778888887778888888888888874   3322222111 111   1112222222222 23467889999


Q ss_pred             HHHHhhccCCCCHHHHHhhc
Q 001578          682 WFDIDGDIDPLFKEYWCKRL  701 (1050)
Q Consensus       682 ~l~~a~~l~p~~~e~w~~r~  701 (1050)
                      .+..+.++.|.....|....
T Consensus       463 ~l~~~~~~~~~~k~~~~~~~  482 (577)
T KOG1258|consen  463 ILLEANDILPDCKVLYLELI  482 (577)
T ss_pred             HHHHhhhcCCccHHHHHHHH
Confidence            99999999999998875443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0049  Score=63.22  Aligned_cols=115  Identities=16%  Similarity=0.045  Sum_probs=71.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 001578          528 SSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRFSKAYHLRGLLL  595 (1050)
Q Consensus       528 ~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~~~la~~~  595 (1050)
                      ...-++++|+++|++++.+-...      .+.+...++++.+..++.+|...+.+-...      .++....+.....++
T Consensus       121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~  200 (308)
T KOG1585|consen  121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY  200 (308)
T ss_pred             hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence            44556777777777777664333      344556677788888888887777664332      233334455555566


Q ss_pred             HHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 001578          596 HGLGQHKKAIKDLSSGLGI----DPSNIECLYLRASCYHAIGEYREAIKDYD  643 (1050)
Q Consensus       596 ~~~g~~~eAi~~l~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~  643 (1050)
                      ....+|..|..+++...++    .+++..++.+|-..|. .|+.++....+.
T Consensus       201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence            6667888888888887665    3444556666655543 466666554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.67  E-value=8.4e-05  Score=64.51  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=61.4

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 001578          616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDI  689 (1050)
Q Consensus       616 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l  689 (1050)
                      |+-..++.++|.+|..+|++++|+.+|++++++.-...+.....+.+++..|.++...|++++|+.+|++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            33467899999999999999999999999998843333334445789999999999999999999999999875

...

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.66  E-value=0.078  Score=64.28  Aligned_cols=304  Identities=16%  Similarity=0.078  Sum_probs=196.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPS-----AGEAW  452 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~  452 (1050)
                      .-.+.+..-+..+...|...+|+...-.+  .+|.-. ..+...+.-+...++..-    +...++.-|.     ++...
T Consensus       345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lv  418 (894)
T COG2909         345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLV  418 (894)
T ss_pred             chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHH
Confidence            33778888888888999999998876544  223221 222333444444444332    3333333342     35566


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 001578          453 KRRGQARAALGESVEAIQDLSKALEFEPN---------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KS  518 (1050)
Q Consensus       453 ~~la~~~~~~g~~~eA~~~l~kal~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-----~~  518 (1050)
                      ...+.......++.+|..++.++...-+.         .+......|.+....|+++.|+++.+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            67788888899999999999888765443         13455667888899999999999999999987765     35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCC--hHHHHHHHHHHH----hhCCCCHH
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLAN--SEKALECLQQVL----YIDKRFSK  586 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~--~~~A~~~l~~al----~~~p~~~~  586 (1050)
                      ++..+|.+..-.|++++|..+...+.+.....      ..+....+.++..+|+  +++....+...-    ...|.+..
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            67788999999999999999999998874432      2333455777888883  333333333322    22333333


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC--H-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001578          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSN--I-ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (1050)
Q Consensus       587 ~~~~la~~~~~~g~~~eAi~~l~~al~~----~p~~--~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~  659 (1050)
                      .....+.++...-+++.+.......++.    .|..  . -+++.++.++...|+.++|...+.....+--+...-..+.
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~  658 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL  658 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence            4444444444444467766666666554    2322  2 2335899999999999999999999887765442222333


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578          660 CLAFYQKEIALYTASKINSEFCWFDIDGD  688 (1050)
Q Consensus       660 ~~~~~~~g~~~~~~~~~~~A~~~l~~a~~  688 (1050)
                      +.++.-+...-...|+...|..++.+.+.
T Consensus       659 a~~~~v~~~lwl~qg~~~~a~~~l~~s~~  687 (894)
T COG2909         659 AAAYKVKLILWLAQGDKELAAEWLLKSGD  687 (894)
T ss_pred             HHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence            34443344444556788888887766443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.66  E-value=0.024  Score=67.04  Aligned_cols=153  Identities=15%  Similarity=0.081  Sum_probs=118.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHH--------HHHHHHHH----HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578          529 SIGEYKKAEEAHLKAIQLDRNFLEAW--------GHLTQFYQ----DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~p~~~~~~--------~~la~~~~----~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  596 (1050)
                      -.|+-+.++..+.++.+. ++-....        +.....+.    .....+.|.+++.......|+..-.++..|.++.
T Consensus       200 F~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~  278 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER  278 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            368999999999998773 3221111        11111111    2456788999999999999999999999999999


Q ss_pred             HCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001578          597 GLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT  672 (1050)
Q Consensus       597 ~~g~~~eAi~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~  672 (1050)
                      ..|+.++|++.|++++.....-    .-+++.+|.++..++++++|..++.+..+.+.-+      .+...|..|.++..
T Consensus       279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS------ka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS------KAFYAYLAAACLLM  352 (468)
T ss_pred             HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH------HHHHHHHHHHHHHh
Confidence            9999999999999998643332    3478899999999999999999999999866443      45677888899988


Q ss_pred             hcCH-------HHHHHHHHHhhc
Q 001578          673 ASKI-------NSEFCWFDIDGD  688 (1050)
Q Consensus       673 ~~~~-------~~A~~~l~~a~~  688 (1050)
                      .++.       ++|..+|.++..
T Consensus       353 l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHHHH
Confidence            8888       777777766544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.19  Score=56.68  Aligned_cols=185  Identities=15%  Similarity=0.110  Sum_probs=108.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC------cHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-------C
Q 001578          427 FQRELEAAISDFTEAIQSNPS------AGE--------AWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S  482 (1050)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~------~~~--------~~~~la~~~~~~g~~~eA~~~l~kal~~---~p~-------~  482 (1050)
                      ..|-+++|.++-++++.....      ...        .+..++.+-.-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            346677777777777654211      111        2334555666677887777766665543   232       2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---------
Q 001578          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---------  550 (1050)
Q Consensus       483 ~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~---------  550 (1050)
                      +.+...+|......+.++.|...|..+.+.....   +.+..++|.+|...|+-+.-.+.++.   +.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence            4466667777777777777777777777664332   23445667777776654443333332   33332         


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 001578          551 -LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (1050)
Q Consensus       551 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~eAi~~l~~al~~  614 (1050)
                       ..+++..|...+.++++.+|...+.+.++....      .+..+..+|.+..-.|+..++.+..+-++.+
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql  514 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL  514 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence             345556666666777777777777777665421      1223455666666777777776666665554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.60  E-value=0.0034  Score=70.99  Aligned_cols=197  Identities=16%  Similarity=0.047  Sum_probs=136.6

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001578          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (1050)
Q Consensus       446 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~  525 (1050)
                      .+....-..+..-..+..+...-++...+|++++|+.+++|..++.-  ...-..+|.++|+++++.....    +....
T Consensus       165 ~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~  238 (539)
T PF04184_consen  165 TDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQ  238 (539)
T ss_pred             CCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhh
Confidence            33333334555566677889999999999999999999998887753  2344688899999988764321    11111


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCH
Q 001578          526 ALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGLGQH  601 (1050)
Q Consensus       526 ~~~~~g~~~eA~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~  601 (1050)
                      .....|..-+       .....+.  ...+...+|.+..++|+.++|++.++..++..|.  +..++.++..++..++.|
T Consensus       239 ~~~~~g~~~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y  311 (539)
T PF04184_consen  239 FLQHHGHFWE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY  311 (539)
T ss_pred             hhhcccchhh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence            1112221111       1111111  2455678999999999999999999999988774  456899999999999999


Q ss_pred             HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-ccC---------------HHHHHHHHHHHHHhcCCCHHH
Q 001578          602 KKAIKDLSSGLGI-DPSNIECLYLRASCYHA-IGE---------------YREAIKDYDAALDLELDSMEK  655 (1050)
Q Consensus       602 ~eAi~~l~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~~al~l~p~~~~~  655 (1050)
                      .++...+.+.-++ -|..+...|..|.+..+ .++               -..|.+.+.+|++.+|.-+..
T Consensus       312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            9999999986544 35666666666655433 222               235788999999999987753

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.55  E-value=0.022  Score=65.14  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 001578          586 KAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (1050)
Q Consensus       586 ~~~~~la~~~~~~------g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~  632 (1050)
                      .++..+|......      +..++++..|.+++..+|....+++.+|..+...
T Consensus       253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence            4566677777677      8889999999999999999888998888877654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.012  Score=61.18  Aligned_cols=218  Identities=16%  Similarity=0.180  Sum_probs=124.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 001578          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-GESVEAIQDLS  473 (1050)
Q Consensus       395 g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~  473 (1050)
                      .+|.++..+|+.++..+...                 ..|+.....++.++|.+-.+|...-.++..+ .+..+-++++.
T Consensus        40 e~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~  102 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD  102 (318)
T ss_pred             hhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            35666666666655554333                 3444555556666666666665555554443 34566666777


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Q 001578          474 KALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (1050)
Q Consensus       474 kal~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  552 (1050)
                      +.++-+|.+-++|...-.+....|++. .-+++.+.++..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-.
T Consensus       103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS  182 (318)
T KOG0530|consen  103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS  182 (318)
T ss_pred             HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence            777777777777777666666666666 6666777777777777777777777777777777777777777766655544


Q ss_pred             HHHHHHHHHHH-cC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC--CHHHHHHHHHHHH-hcCCCCHHHH
Q 001578          553 AWGHLTQFYQD-LA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG--QHKKAIKDLSSGL-GIDPSNIECL  622 (1050)
Q Consensus       553 ~~~~la~~~~~-~g-----~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g--~~~eAi~~l~~al-~~~p~~~~~~  622 (1050)
                      +|...-.+... .|     ..+.-+.+..+.+...|++..+|..+.-++.. .|  .+.+........+ ......+..+
T Consensus       183 AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~ll  262 (318)
T KOG0530|consen  183 AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLL  262 (318)
T ss_pred             hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHH
Confidence            44432111111 11     12334555666666777777777776666654 33  2333333333333 2233344444


Q ss_pred             HHHHHHH
Q 001578          623 YLRASCY  629 (1050)
Q Consensus       623 ~~la~~~  629 (1050)
                      --+..+|
T Consensus       263 a~l~d~~  269 (318)
T KOG0530|consen  263 AFLLDLY  269 (318)
T ss_pred             HHHHHHH
Confidence            4444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.51  E-value=0.00011  Score=52.25  Aligned_cols=33  Identities=30%  Similarity=0.410  Sum_probs=31.2

Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Q 001578           92 CDKALQLDPTLLQAYILKGCAFSALGRKEEALS  124 (1050)
Q Consensus        92 ~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~  124 (1050)
                      |++||+++|+++.+|+.+|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999963

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00029  Score=71.77  Aligned_cols=92  Identities=21%  Similarity=0.184  Sum_probs=54.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 001578          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (1050)
Q Consensus       386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  465 (1050)
                      ..|..++....|..|+.+|.+++..+|..+..+.+.+.|+++..+++.+.....+++++.|+....++.+|.+......|
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            34445555555666666666666666665555666666666666666666666666666665555555555555555555


Q ss_pred             HHHHHHHHHHHh
Q 001578          466 VEAIQDLSKALE  477 (1050)
Q Consensus       466 ~eA~~~l~kal~  477 (1050)
                      ++|+..+.++..
T Consensus        95 ~eaI~~Lqra~s  106 (284)
T KOG4642|consen   95 DEAIKVLQRAYS  106 (284)
T ss_pred             cHHHHHHHHHHH
Confidence            555555555544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.48  E-value=0.0028  Score=69.77  Aligned_cols=136  Identities=10%  Similarity=-0.054  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~  597 (1050)
                      +|..+.....+.+..+.|...|.+|++..+....+|...|.+... .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566666777777778888999999886666667888888888666 5566669999999999999988888888888889


Q ss_pred             CCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          598 LGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       598 ~g~~~eAi~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      .++.+.|..+|++++..-+...   .+|......-...|+.+.....++++.+..|++..
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999988766544   57777888888889999999999999999887543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.47  E-value=0.038  Score=66.92  Aligned_cols=262  Identities=15%  Similarity=0.036  Sum_probs=187.2

Q ss_pred             CcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 001578          379 ISVDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQ  443 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~-----g~~~~Ai~~~~~al~~-----~p~~~~a~~~la~~~~~~g-----~~~~A~~~~~~al~  443 (1050)
                      .+......+|.+++.-     .|.+.|+.+|+.+.+.     .-.++.+.+.+|.+|....     +++.|+.+|.++-.
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            3466667777777654     5899999999999771     1225668889999998843     77889999999877


Q ss_pred             hCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 001578          444 SNPSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKEN  516 (1050)
Q Consensus       444 ~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~l~~al~~~p~~  516 (1050)
                      ..  ++++.+.+|.++..-.   +...|.++|..|....  +..+.+.+|.+|..    ..+...|..+++++.+..  +
T Consensus       322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~  395 (552)
T KOG1550|consen  322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--N  395 (552)
T ss_pred             cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--C
Confidence            54  5677788888887765   6789999999998754  77888889988875    358899999999999987  4


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHH
Q 001578          517 KSAYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKA  587 (1050)
Q Consensus       517 ~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~p~~~~----~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~  587 (1050)
                      +.+...++..+..- +.++.+...+....+..-..+.    .+.........    ..+...+...+.++..  ..+..+
T Consensus       396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a  473 (552)
T KOG1550|consen  396 PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADA  473 (552)
T ss_pred             hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHH
Confidence            55555555554433 7777777666655544322211    11111111111    1245566666666543  466788


Q ss_pred             HHHHHHHHHHC----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCC
Q 001578          588 YHLRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       588 ~~~la~~~~~~----g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      ...+|.+|..-    .+++.|...|.++....   ....+++|.++..    .. ...|..+|.++.+.+.+.
T Consensus       474 ~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  474 ILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRA  542 (552)
T ss_pred             HhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchh
Confidence            88999988764    46999999999998876   8899999999874    23 789999999998876543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.45  E-value=0.034  Score=62.48  Aligned_cols=118  Identities=13%  Similarity=0.027  Sum_probs=67.2

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCcHH
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTE-AIQSNPSAGE  450 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~  450 (1050)
                      .+++....+=..|....+|+.-+++.+.+-..    -++.+.+...+|.++.+   .|+.++|+..+.. .....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            44555556656666667777777766665544    33455566666766666   6777777777766 3334455666


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 001578          451 AWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (1050)
Q Consensus       451 ~~~~la~~~~~~---------g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g  497 (1050)
                      .+..+|.+|...         ...++|+..|.++.+++| +...-.+++.++...|
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAG  273 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcC
Confidence            777777666542         124555555555555554 2222333444444444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.43  E-value=0.005  Score=70.06  Aligned_cols=95  Identities=25%  Similarity=0.274  Sum_probs=86.1

Q ss_pred             HHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578          561 YQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       561 ~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  639 (1050)
                      +...|+...|+.++..|+...|... ....++|.++...|-...|-..+.+++.+....+-.++.+|.+|..+.+.+.|+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence            4457999999999999999888543 357789999999999999999999999999888899999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHH
Q 001578          640 KDYDAALDLELDSMEK  655 (1050)
Q Consensus       640 ~~~~~al~l~p~~~~~  655 (1050)
                      +.|+.|++++|+++..
T Consensus       697 ~~~~~a~~~~~~~~~~  712 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPEC  712 (886)
T ss_pred             HHHHHHHhcCCCChhh
Confidence            9999999999999873

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.43  E-value=0.026  Score=65.67  Aligned_cols=299  Identities=18%  Similarity=0.116  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 001578          382 DFRLSRGIAQVNEGKYASAISIFDQI------LKE----DPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSN-----  445 (1050)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~Ai~~~~~a------l~~----~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----  445 (1050)
                      +.|-..|..+....++++|+++|++.      +++    .|... ..--..|.-+.+.|+++.|+..|-.+-.+-     
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea  741 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA  741 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence            34445566666677777777777643      222    23221 122334566677788888887765542110     


Q ss_pred             --------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001578          446 --------------------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (1050)
Q Consensus       446 --------------------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  505 (1050)
                                          ......|-.++.-|...|+|+.|.++|.++-        .......+|-+.|++..|..+
T Consensus       742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHH
Confidence                                0011234455666667777777777665542        222334556667777777666


Q ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH------HHHHhCcC-----------------c-HHHHHHHHHH
Q 001578          506 LSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHL------KAIQLDRN-----------------F-LEAWGHLTQF  560 (1050)
Q Consensus       506 l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~------~al~~~p~-----------------~-~~~~~~la~~  560 (1050)
                      ..++.  .|.. ...|...+.-+-..|+|.+|.+.|-      ++++....                 . .+.+..+|.-
T Consensus       814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e  891 (1636)
T KOG3616|consen  814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKE  891 (1636)
T ss_pred             HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHH
Confidence            65543  2332 3456667777888999999998773      34443211                 1 2455678888


Q ss_pred             HHHcCChHHHHHHHHHHHhhC------CC-----------------CHH--HHHH---------HHHHHHHCCCHHHHHH
Q 001578          561 YQDLANSEKALECLQQVLYID------KR-----------------FSK--AYHL---------RGLLLHGLGQHKKAIK  606 (1050)
Q Consensus       561 ~~~~g~~~~A~~~l~~al~~~------p~-----------------~~~--~~~~---------la~~~~~~g~~~eAi~  606 (1050)
                      |...|+...|...|-++-...      ..                 +..  +.+.         ...++-+.|-.++|+.
T Consensus       892 ~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id  971 (1636)
T KOG3616|consen  892 LEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAID  971 (1636)
T ss_pred             HHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhh
Confidence            889999999999887763221      10                 000  0000         1122233444444443


Q ss_pred             HH------HHHHh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc-
Q 001578          607 DL------SSGLG-----IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS-  674 (1050)
Q Consensus       607 ~l------~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~-  674 (1050)
                      ..      +-++.     .....++++..++..+...|++++|-+.|-.+++++.-+.. |.......+.  ....+.| 
T Consensus       972 ~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit-wcqavpsrfd--~e~ir~gn 1048 (1636)
T KOG3616|consen  972 FAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT-WCQAVPSRFD--AEFIRAGN 1048 (1636)
T ss_pred             hhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch-hhhcccchhh--HHHHHcCC
Confidence            21      11111     12234578888999999999999999999999998765432 1111111111  1122334 


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHH
Q 001578          675 KINSEFCWFDIDGDIDPLFKEYW  697 (1050)
Q Consensus       675 ~~~~A~~~l~~a~~l~p~~~e~w  697 (1050)
                      +-++|...|-    .+.+|....
T Consensus      1049 kpe~av~mfi----~dndwa~ae 1067 (1636)
T KOG3616|consen 1049 KPEEAVEMFI----HDNDWAAAE 1067 (1636)
T ss_pred             ChHHHHHHhh----hcccHHHHH
Confidence            7888888873    455666653

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.43  E-value=0.0038  Score=68.74  Aligned_cols=132  Identities=11%  Similarity=0.037  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001578          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (1050)
Q Consensus       452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~  530 (1050)
                      |..+.....+.+..+.|..+|.+|.+..+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            33334444444444555555555543333334444444444333 23333355555555555555555555444555555


Q ss_pred             CCHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 001578          531 GEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (1050)
Q Consensus       531 g~~~eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~  583 (1050)
                      ++.+.|...|++++..-+...   .+|......-...|+.+....+.+++.+..|.
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            555555555555544433322   34444444444455555555555555554444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.42  E-value=0.00021  Score=80.23  Aligned_cols=109  Identities=24%  Similarity=0.333  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      +-..|..++..++|+.|+..|.++++++|+.+..+..++.++.+.+++..|+..+.+|++.+|....+|+..|.+....+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            33456667777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIV  492 (1050)
Q Consensus       464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~  492 (1050)
                      .+.+|+..|+....+.|+++.+...+..+
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence            88888888888888888887776655544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.42  E-value=0.061  Score=61.42  Aligned_cols=73  Identities=11%  Similarity=-0.008  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHc------cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------HhcCHHHHHHHH
Q 001578          620 ECLYLRASCYHAI------GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY----------TASKINSEFCWF  683 (1050)
Q Consensus       620 ~~~~~la~~~~~~------g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~A~~~l  683 (1050)
                      .++..+|......      +..+++...|..+++++|+...++...+..+...-....          .......|+..|
T Consensus       253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y  332 (352)
T PF02259_consen  253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY  332 (352)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence            5667777777777      889999999999999999988877665554444322221          122345678888


Q ss_pred             HHhhccCCC
Q 001578          684 DIDGDIDPL  692 (1050)
Q Consensus       684 ~~a~~l~p~  692 (1050)
                      -+++.+.+.
T Consensus       333 ~~al~~~~~  341 (352)
T PF02259_consen  333 LKALSLGSK  341 (352)
T ss_pred             HHHHhhCCC
Confidence            888888777

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.40  E-value=0.36  Score=54.29  Aligned_cols=93  Identities=9%  Similarity=-0.049  Sum_probs=66.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HH--------
Q 001578          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EA--------  451 (1050)
Q Consensus       386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~--------  451 (1050)
                      .+-...+-.++.+.-...+-..-+..|..+......|...++.+++.+|++.+..-...-....      .+        
T Consensus        50 grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~  129 (549)
T PF07079_consen   50 GRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFF  129 (549)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHH
Confidence            3333444456666666666666667788888888899999999999999998877665422221      11        


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001578          452 -WKRRGQARAALGESVEAIQDLSKALEF  478 (1050)
Q Consensus       452 -~~~la~~~~~~g~~~eA~~~l~kal~~  478 (1050)
                       -...|.++...|++.++...+++.+..
T Consensus       130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen  130 LDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence             123577888999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0011  Score=67.85  Aligned_cols=122  Identities=21%  Similarity=0.168  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (1050)
Q Consensus       517 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  596 (1050)
                      ..++..-|+-++..|+|.+|...|..|+..-.          .+..+.+-.+.      +.++++......+.++++|+.
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~----------~L~lkEkP~e~------eW~eLdk~~tpLllNy~QC~L  241 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLR----------NLQLKEKPGEP------EWLELDKMITPLLLNYCQCLL  241 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHH----------HHHhccCCCCh------HHHHHHHhhhHHHHhHHHHHh
Confidence            45677788888888888888888887764311          11111110000      112233334567889999999


Q ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       597 ~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ..|+|-++++.....+..+|.+..+++.+|.+....=+..+|...|.++++++|.-..
T Consensus       242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            9999999999999999999999999999999999999999999999999999987543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.31  E-value=0.012  Score=67.15  Aligned_cols=120  Identities=15%  Similarity=0.034  Sum_probs=100.8

Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001578          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP--EALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (1050)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~--~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (1050)
                      ....+..+.+...+..-+.....+|+..+|..++..++-..|...  .+++.+|.++.+.|...+|--.+..|+...|..
T Consensus       203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~  282 (886)
T KOG4507|consen  203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF  282 (886)
T ss_pred             HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence            344556777777777777777889999999999999998877653  578899999999999999999999999888887


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001578          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG  490 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg  490 (1050)
                      ..-++.++.++..++++......|..+.+..|......-...
T Consensus       283 t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~  324 (886)
T KOG4507|consen  283 TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRK  324 (886)
T ss_pred             cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHH
Confidence            777999999999999999999999999999997655444433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.29  E-value=0.086  Score=59.30  Aligned_cols=116  Identities=10%  Similarity=0.025  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHHH
Q 001578          450 EAWKRRGQARAALGESVEAIQDLSKALEF----EPNSADILHERGIVNFK---FKDFNAAVEDLSAC-VKLDKENKSAYT  521 (1050)
Q Consensus       450 ~~~~~la~~~~~~g~~~eA~~~l~kal~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~l~~a-l~~~p~~~~~~~  521 (1050)
                      ++...+-..|....+|+.-+.+.+..-.+    -++...+.+.+|.++.+   .|+.++|+..+..+ ....+.+++.+.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            34444444555555555555555544443    22344455555555555   55555665555552 233344455555


Q ss_pred             HHHHHHHHc---------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC
Q 001578          522 YLGLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (1050)
Q Consensus       522 ~la~~~~~~---------g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~  566 (1050)
                      .+|.+|-..         ...++|+..|.++.+++|+. ..-.|++.++...|.
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            555554321         12455666666666665432 222334444444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.23  E-value=0.52  Score=58.15  Aligned_cols=287  Identities=19%  Similarity=0.143  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHcCCH
Q 001578          397 YASAISIFDQILKEDPM----YPEALIGRGTARA-FQRELEAAISDFTEAIQSNPS--AG----EAWKRRGQARAALGES  465 (1050)
Q Consensus       397 ~~~Ai~~~~~al~~~p~----~~~a~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~  465 (1050)
                      ...|+.+++.+++..+-    .+.+++.+|.+++ ...+++.|..++++++.+...  ..    .+...++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            45677777777743222    2456777788777 677888888888888776533  22    2345567777777766


Q ss_pred             HHHHHHHHHHHhhCCCC---H-H-HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCH
Q 001578          466 VEAIQDLSKALEFEPNS---A-D-ILHER-GIVNFKFKDFNAAVEDLSACVKLD--KENKSA----YTYLGLALSSIGEY  533 (1050)
Q Consensus       466 ~eA~~~l~kal~~~p~~---~-~-~~~~l-g~~~~~~g~~~~A~~~l~~al~~~--p~~~~~----~~~la~~~~~~g~~  533 (1050)
                      . |+..+++.++.....   . . ++..+ ...+...+++..|++.++......  ..++.+    ....+.++...+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            6 888888887765431   1 1 11112 233333478888888888877765  344332    23345566667777


Q ss_pred             HHHHHHHHHHHHhCc----------CcHHHHHHHHH--HHHHcCChHHHHHHHHHHHh---h---CC---C---------
Q 001578          534 KKAEEAHLKAIQLDR----------NFLEAWGHLTQ--FYQDLANSEKALECLQQVLY---I---DK---R---------  583 (1050)
Q Consensus       534 ~eA~~~l~~al~~~p----------~~~~~~~~la~--~~~~~g~~~~A~~~l~~al~---~---~p---~---------  583 (1050)
                      +++++.++++.....          ....++..+-.  ++...|+++.+...+++.-.   .   .+   .         
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l  275 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL  275 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence            777777777644321          11333433333  34456666666655544321   1   11   0         


Q ss_pred             ------------C------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCC--------------
Q 001578          584 ------------F------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-------PSN--------------  618 (1050)
Q Consensus       584 ------------~------------~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-------p~~--------------  618 (1050)
                                  .            .-+|..-|......+..++|.+++.+++..-       +..              
T Consensus       276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~  355 (608)
T PF10345_consen  276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW  355 (608)
T ss_pred             ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence                        0            1123334556666777778888888776531       110              


Q ss_pred             -----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001578          619 -----IECLYLRASCYHAIGEYREAIKDYDAALDLELDSME--KFVLQCLAFYQKEIALYTASKINSEFCWFD  684 (1050)
Q Consensus       619 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~  684 (1050)
                           ..+++..+.+..-.|++..|......+.......+.  ........+|-.|+.+...|+.+.|...|.
T Consensus       356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence                 024456777888899999999999988876543322  122345778888999999999999999997

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.21  E-value=0.00064  Score=51.63  Aligned_cols=39  Identities=26%  Similarity=0.277  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001578          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (1050)
Q Consensus       588 ~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la  626 (1050)
                      +..+|.+|..+|++++|+..|+++++.+|+++.++..+|
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            334444444444444444444444444444444444333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.21  E-value=0.14  Score=62.20  Aligned_cols=275  Identities=17%  Similarity=0.063  Sum_probs=189.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 001578          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG--  463 (1050)
Q Consensus       396 ~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--  463 (1050)
                      ....|..+++.+.+.  .+..+...+|.++..-     .+.+.|+.+|..+...     ....+.+.+.+|.+|....  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888877654  4677888888888764     5899999999999771     1124567888999998853  


Q ss_pred             ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCH
Q 001578          464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY  533 (1050)
Q Consensus       464 ---~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~  533 (1050)
                         ++..|+.+|.++-...  ++++.+.+|.++..-.   ++..|.++|..|...  .+..+.+.+|.+|..    ..+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence               7788999999998875  5677888898888765   678999999998765  467888899988875    3578


Q ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH----CCCHHHH
Q 001578          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYIDKRFSK----AYHLRGLLLHG----LGQHKKA  604 (1050)
Q Consensus       534 ~eA~~~l~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~~p~~~~----~~~~la~~~~~----~g~~~eA  604 (1050)
                      ..|..++.++.+..  .+.+...++..+..- ++++.+.-.+....+..-..+.    .+.........    ..+...+
T Consensus       381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~  458 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA  458 (552)
T ss_pred             HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence            99999999999887  445555555544332 7777776666555444222111    11111111111    1245666


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH----hcCH
Q 001578          605 IKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYT----ASKI  676 (1050)
Q Consensus       605 i~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~----~~~~  676 (1050)
                      ...+.++..  ..+..+...+|.+|..-    .+++.|...|.++....   .       ...+..|..+..    .. +
T Consensus       459 ~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~-------~~~~nlg~~~e~g~g~~~-~  525 (552)
T KOG1550|consen  459 FSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---A-------QALFNLGYMHEHGEGIKV-L  525 (552)
T ss_pred             HHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---h-------HHHhhhhhHHhcCcCcch-h
Confidence            677766653  45678888999988765    35999999999998876   3       334444444321    22 6


Q ss_pred             HHHHHHHHHhhccCC
Q 001578          677 NSEFCWFDIDGDIDP  691 (1050)
Q Consensus       677 ~~A~~~l~~a~~l~p  691 (1050)
                      ..|..+++++.+.+.
T Consensus       526 ~~a~~~~~~~~~~~~  540 (552)
T KOG1550|consen  526 HLAKRYYDQASEEDS  540 (552)
T ss_pred             HHHHHHHHHHHhcCc
Confidence            777777777765443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.21  E-value=0.0007  Score=51.42  Aligned_cols=43  Identities=23%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001578           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (1050)
Q Consensus        70 ~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~  112 (1050)
                      ..+..+|.+|..+|++++|++.++++++.+|++..++..+|.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            4577889999999999999999999999999999999888753

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.14  E-value=0.00061  Score=48.39  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 001578           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (1050)
Q Consensus        71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~  102 (1050)
                      .++++|.+|+.+|++++|+..|++||+++|++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            46677777777777777777777777777763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.018  Score=61.36  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=101.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHH
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQA  458 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~  458 (1050)
                      ..+.-+..+......|++.+|...|..++...|++.++...++.++...|+.+.|...+...-...... ..........
T Consensus       133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l  212 (304)
T COG3118         133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            345567778889999999999999999999999999999999999999999999988876642222111 1111111122


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Q 001578          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG  531 (1050)
Q Consensus       459 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g  531 (1050)
                      +.+.....+. ..+++.+..+|++.++.+.+|..+...|+++.|++.+-..++.+..  +..+...+-.++...|
T Consensus       213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            2222222221 3345556678888888888888888888888888888777776543  2334444444444444

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.13  E-value=0.83  Score=56.39  Aligned_cols=263  Identities=12%  Similarity=0.038  Sum_probs=174.9

Q ss_pred             cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c-
Q 001578          380 SVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPS---A-  448 (1050)
Q Consensus       380 ~~~~~~~~a~~~~-~~g~~~~Ai~~~~~al~~~p~--~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~-  448 (1050)
                      .+..++.+|.+++ ...+++.|..++++++.....  ..    .+.+.++.++.+.+... |...++++++....   . 
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~  136 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA  136 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence            4668889999988 678999999999999876533  22    34556788888888777 99999999987554   1 


Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCC--CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 001578          449 GEAWKRR--GQARAALGESVEAIQDLSKALEFEP--NSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDK------  514 (1050)
Q Consensus       449 ~~~~~~l--a~~~~~~g~~~eA~~~l~kal~~~p--~~~~----~~~~lg~~~~~~g~~~~A~~~l~~al~~~p------  514 (1050)
                      ....+.+  ...+...+++..|++.++.......  .++.    +....+.++...+..+++++.++++.....      
T Consensus       137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~  216 (608)
T PF10345_consen  137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP  216 (608)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence            2222222  3333334799999999999988763  4443    333446667778888889888888754322      


Q ss_pred             C----CHHHHHHHHH--HHHHcCCHHHHHHHHHHH---HHh---Cc---C---------------------c--------
Q 001578          515 E----NKSAYTYLGL--ALSSIGEYKKAEEAHLKA---IQL---DR---N---------------------F--------  550 (1050)
Q Consensus       515 ~----~~~~~~~la~--~~~~~g~~~eA~~~l~~a---l~~---~p---~---------------------~--------  550 (1050)
                      .    ...++..+-.  ++...|+++.+...+++.   +..   .+   .                     .        
T Consensus       217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~  296 (608)
T PF10345_consen  217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK  296 (608)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence            1    1233333332  455677766666554443   221   11   0                     0        


Q ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----------C----------------HHHHHHHHHHHHHCCC
Q 001578          551 ----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----------F----------------SKAYHLRGLLLHGLGQ  600 (1050)
Q Consensus       551 ----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----------~----------------~~~~~~la~~~~~~g~  600 (1050)
                          .-++..-|......+..++|.+++++++..-.+          .                .......+.+..-.++
T Consensus       297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~  376 (608)
T PF10345_consen  297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD  376 (608)
T ss_pred             HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence                112233345566667777888888888753111          0                1134556777788999


Q ss_pred             HHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 001578          601 HKKAIKDLSSGLGID---PS------NIECLYLRASCYHAIGEYREAIKDYD  643 (1050)
Q Consensus       601 ~~eAi~~l~~al~~~---p~------~~~~~~~la~~~~~~g~~~eA~~~~~  643 (1050)
                      +..|......+....   |.      .+..++..|..+...|+.+.|..+|.
T Consensus       377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            999999888776542   22      36789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.13  E-value=0.27  Score=54.12  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=28.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 001578          650 LDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG  687 (1050)
Q Consensus       650 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~  687 (1050)
                      |-...+.........+.|...|..++|..|..+|+.++
T Consensus       236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44444444444567778999999999999999998665

It is also involved in sporulation [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.12  Score=62.89  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=108.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 001578          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (1050)
Q Consensus       386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  465 (1050)
                      ..|.+....+-|++|..+|.+--    -+..+...   +....+..+.|.++.++.     +.+.+|..+|.+....|..
T Consensus      1053 ~ia~iai~~~LyEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCch
Confidence            34667777888889988887631    11111111   111234444444444432     3345555555555555555


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCCH
Q 001578          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD----------------------------KENK  517 (1050)
Q Consensus       466 ~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~----------------------------p~~~  517 (1050)
                      .+|++.|-++     +++..|.....+..+.|.|++-+.++..+-+..                            |+.+
T Consensus      1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred             HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch
Confidence            5555555433     344455555555555555555555554443332                            2211


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---------------
Q 001578          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---------------  582 (1050)
Q Consensus       518 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---------------  582 (1050)
                       -....|.-++..|.|+.|.-+|..        ..-|..++..+..+|+|..|.+..++|-....               
T Consensus      1196 -~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1196 -NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred             -hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence             122334444445555554444432        23345566666666777777666666522100               


Q ss_pred             ----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578          583 ----------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (1050)
Q Consensus       583 ----------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~  631 (1050)
                                -+++-+-.+...|...|-+++-+..++.++-+...+...+..+|.+|.+
T Consensus      1267 lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1267 LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence                      0112233444455555555555555555555555444555555555443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.08  E-value=0.1  Score=61.08  Aligned_cols=183  Identities=16%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChH
Q 001578          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (1050)
Q Consensus       489 lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~  568 (1050)
                      .|.-+...|+++.|+.+|-++--        ...-..+.....++.+|+..++..-... .....|-.++.-|...|+|+
T Consensus       712 wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe  782 (1636)
T KOG3616|consen  712 WGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFE  782 (1636)
T ss_pred             HhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHH
Confidence            34445555555555555543311        1111122233344444444444322211 11233445667777778888


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHH----
Q 001578          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYD----  643 (1050)
Q Consensus       569 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~----  643 (1050)
                      .|.++|.++-        ........|-+.|++.+|.+.-.++..  |.. ...|...+.-+.+.|+|.+|.+.|-    
T Consensus       783 ~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~  852 (1636)
T KOG3616|consen  783 IAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE  852 (1636)
T ss_pred             HHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence            8887776642        222334456677788877777666543  332 3455566666666777666665552    


Q ss_pred             --HHHHhcCCC---HHH--H------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 001578          644 --AALDLELDS---MEK--F------VLQCLAFYQKEIALYTASKINSEFCWFDIDGDID  690 (1050)
Q Consensus       644 --~al~l~p~~---~~~--~------~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~  690 (1050)
                        +++++....   .+.  .      -.+.......+..+...|++..|...|-+++++.
T Consensus       853 p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k  912 (1636)
T KOG3616|consen  853 PDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK  912 (1636)
T ss_pred             chHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH
Confidence              222221100   000  0      0011334445666677788888888877766543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.08  E-value=1  Score=52.86  Aligned_cols=258  Identities=10%  Similarity=0.058  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 001578          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR-AALGESVEAIQDLSKA  475 (1050)
Q Consensus       397 ~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~l~ka  475 (1050)
                      .+.+...|...|...|.....|...|..-.+.|..+.+.+.|++++.--|...+.|..+-... ...|+.+.-...|++|
T Consensus        61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A  140 (577)
T KOG1258|consen   61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA  140 (577)
T ss_pred             HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            366777788888899999999999999999999999999999999999998888776544433 3457778888888988


Q ss_pred             HhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----------------------HHHHHHHH--
Q 001578          476 LEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY----------------------TYLGLALS--  528 (1050)
Q Consensus       476 l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~----------------------~~la~~~~--  528 (1050)
                      ......+   ...|-.+-.....++++..-...|++.++.--.....+                      ..+..--.  
T Consensus       141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~  220 (577)
T KOG1258|consen  141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER  220 (577)
T ss_pred             HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence            8876543   23444444444556666666666666655311110000                      00000000  


Q ss_pred             ----------------------HcCCHHHHHHHHHHHHHh-----------------------------Cc---CcHHHH
Q 001578          529 ----------------------SIGEYKKAEEAHLKAIQL-----------------------------DR---NFLEAW  554 (1050)
Q Consensus       529 ----------------------~~g~~~eA~~~l~~al~~-----------------------------~p---~~~~~~  554 (1050)
                                            ..+.++++...+.+...+                             .|   .....|
T Consensus       221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw  300 (577)
T KOG1258|consen  221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW  300 (577)
T ss_pred             hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence                                  001112222221111111                             11   123455


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Q 001578          555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIG  633 (1050)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-p~~~~~~~~la~~~~~~g  633 (1050)
                      ..........|+++...-.|++++.-.....+.|...+......|+.+-|-..+.++.+.. |..+..+..-+..-...|
T Consensus       301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~  380 (577)
T KOG1258|consen  301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG  380 (577)
T ss_pred             HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence            5666666778888888888888887777778888888888888888888888888777764 566777777788888888


Q ss_pred             CHHHHHHHHHHHHHhcCCCHH
Q 001578          634 EYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       634 ~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ++..|...|++..+-.|+..+
T Consensus       381 n~~~A~~~lq~i~~e~pg~v~  401 (577)
T KOG1258|consen  381 NFDDAKVILQRIESEYPGLVE  401 (577)
T ss_pred             cHHHHHHHHHHHHhhCCchhh
Confidence            888888888888887777655

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.07  E-value=0.64  Score=56.79  Aligned_cols=233  Identities=15%  Similarity=0.029  Sum_probs=156.0

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--  448 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  448 (1050)
                      ++...+..|.......++.+|..++.++...-+.         .+......|.+....|++++|++..+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            4667788899999999999999999988765433         13455677888999999999999999999987765  


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHH--HHHHHHH----HHhC
Q 001578          449 ---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAA--VEDLSAC----VKLD  513 (1050)
Q Consensus       449 ---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~lg~~~~~~g~~~~A--~~~l~~a----l~~~  513 (1050)
                         ..++..+|.+..-.|++++|..+...+.+.....      ..+....+.++..+|+...|  ...+...    +...
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~  573 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK  573 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence               3467788999999999999999999988874321      23445567788888843333  3333222    2223


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCc--H-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 001578          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--  584 (1050)
Q Consensus       514 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~----p~~--~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--  584 (1050)
                      |-........+.++...-+++.+.......++..    |..  . -+++.++.++...|++++|...+........+.  
T Consensus       574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~  653 (894)
T COG2909         574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY  653 (894)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence            3333333333333333333666666555555542    222  2 223588999999999999999998887653322  


Q ss_pred             ---H--HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 001578          585 ---S--KAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (1050)
Q Consensus       585 ---~--~~~~~la~~~~~~g~~~eAi~~l~~al  612 (1050)
                         .  .++.........+|++.+|.....+..
T Consensus       654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             CchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence               1  112222333456889998888887743

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.02  E-value=0.00061  Score=48.40  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=20.7

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 001578          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       608 l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~  639 (1050)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            55666666666666666666666666666664

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.01  E-value=0.16  Score=60.11  Aligned_cols=176  Identities=15%  Similarity=0.029  Sum_probs=123.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCCHHHHHHH
Q 001578          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSA------YTYLGLALS----SIGEYKKAEEA  539 (1050)
Q Consensus       471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~-~~~------~~~la~~~~----~~g~~~eA~~~  539 (1050)
                      .|.-++.+-|..   ...+-.+.--.|+-+.++..+.++.+...-. +-+      |+.....+.    .....+.|.+.
T Consensus       179 ~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~l  255 (468)
T PF10300_consen  179 LFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEEL  255 (468)
T ss_pred             HHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHH
Confidence            344445554422   2223333334588888888888877632111 111      111111111    24567889999


Q ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (1050)
Q Consensus       540 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~eAi~~l~~al~~~  615 (1050)
                      +....+..|+..-..+..|+++...|+.++|++.|++++.....-    .-.++.+|.++..+.+|++|..++.+..+.+
T Consensus       256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999988543322    3457889999999999999999999999876


Q ss_pred             CCC-HHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhc
Q 001578          616 PSN-IECLYLRASCYHAIGEY-------REAIKDYDAALDLE  649 (1050)
Q Consensus       616 p~~-~~~~~~la~~~~~~g~~-------~eA~~~~~~al~l~  649 (1050)
                      .-. .-..|..|.|+...|+.       ++|.+.|.++-.+.
T Consensus       336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            543 44567788999999999       77777777765543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.95  E-value=0.18  Score=57.71  Aligned_cols=152  Identities=13%  Similarity=-0.023  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 001578          499 FNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECLQQ  576 (1050)
Q Consensus       499 ~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~  576 (1050)
                      ++..-.++.+++.+...+. -++..+-....+..-.+.|...|.+|-+.......++..-|.+ |...++.+-|...|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence            4444445555544432222 2233333333333444555555555544332222222222221 3345555555555555


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 001578          577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       577 al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~--~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p  650 (1050)
                      .+...++.+..-......+...++-..|...|++++..  .++ ..+.|..+-..-..-|+...+++.-++-....|
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            55555555555555555555555555555555555554  222 123444444444455555555555554444444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.049  Score=58.17  Aligned_cols=149  Identities=18%  Similarity=0.137  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH--HH
Q 001578          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG--IV  492 (1050)
Q Consensus       415 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg--~~  492 (1050)
                      .+.-+..+.-....|++.+|...|..+++..|++.++...++.+|...|+.+.|...+...-...... ......+  ..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~l  212 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHH
Confidence            44556667777888999999999999999999999999999999999999999988876542222111 1111111  22


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHcC
Q 001578          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA  565 (1050)
Q Consensus       493 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~--~~~~~~la~~~~~~g  565 (1050)
                      +.+.....+. ..+.+.+..+|++..+.+.+|..+...|+.++|.+.+-..+..+...  ..+...+-.++...|
T Consensus       213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            2222222221 23445566688888888888888888888888888887777765432  333444444444444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.91  E-value=0.0015  Score=46.33  Aligned_cols=32  Identities=38%  Similarity=0.728  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46677777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.91  E-value=0.0021  Score=45.54  Aligned_cols=33  Identities=33%  Similarity=0.672  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      .+++.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            566777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0065  Score=65.09  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001578          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (1050)
                      .+..+-..|..|+...+|..|+..|.+.|+..-.+    +..|.++|.+.+..|+|..|+..+.+++.++|.+..++++-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            35667778999999999999999999999865443    45678899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC
Q 001578          456 GQARAALGESVEAIQDLSKALEFEP  480 (1050)
Q Consensus       456 a~~~~~~g~~~eA~~~l~kal~~~p  480 (1050)
                      |.|++.+.++.+|..+.+..+.++.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            9999999999999999888866543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.88  E-value=0.69  Score=50.92  Aligned_cols=122  Identities=12%  Similarity=0.009  Sum_probs=72.2

Q ss_pred             HHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----CC---c-------
Q 001578          392 VNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----PS---A-------  448 (1050)
Q Consensus       392 ~~~g~~~~Ai~~~~~al~~~----p~~----~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~----p~---~-------  448 (1050)
                      ..+|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.++-    +.   .       
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46788888888888876543    222    345666777777777 8888888888777662    11   0       


Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578          449 GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (1050)
Q Consensus       449 ~~~~~~la~~~~~~g~~~---eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~  513 (1050)
                      ..++..++.+|...+.++   +|...++.+-...|+.+.++...-.++...++.+++.+.+.+++...
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            224555666666655433   34444444444555555555444444444566666666666666543

It is also involved in sporulation [].

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.0021  Score=69.65  Aligned_cols=118  Identities=14%  Similarity=0.047  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----------CC---------cHHHHHHHHHHHHhhCHHHHHH
Q 001578           31 SVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIR   90 (1050)
Q Consensus        31 ~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~-----------~~---------~~~~~nra~~~~~~~~~~~Ai~   90 (1050)
                      ..+......|..+++.|++++|+.|..-|.++.+..           ++         ...+.|.+.+-++++.+..|+.
T Consensus       217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~  296 (372)
T KOG0546|consen  217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF  296 (372)
T ss_pred             hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence            334445556677889999999999999999987442           11         1225688999999999999999


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHH
Q 001578           91 DCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (1050)
Q Consensus        91 ~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~  148 (1050)
                      .+..++..++...++|+++|+++..+.++++|++.++.+....|......+.+.....
T Consensus       297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999988877666554433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.73  E-value=0.0027  Score=44.88  Aligned_cols=32  Identities=31%  Similarity=0.305  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCC
Q 001578           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (1050)
Q Consensus        71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~  102 (1050)
                      .++.+|.+|+++|++++|+..+++++.++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            35556666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.70  E-value=0.35  Score=53.67  Aligned_cols=189  Identities=20%  Similarity=0.127  Sum_probs=99.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Q 001578          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKD  498 (1050)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~----~g~  498 (1050)
                      ..+++..|...+..+-..  .+......++.+|..-    .+..+|..+|+.+.+  ..++...+.+|.+|..    ..+
T Consensus        53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d  128 (292)
T COG0790          53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD  128 (292)
T ss_pred             ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence            456667777776666542  2224555555555543    345556666663332  2345555556665554    335


Q ss_pred             HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578          499 FNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (1050)
Q Consensus       499 ~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a  577 (1050)
                      +.+|..+|+++.+..-.. ..+.+.++.++..-. ...+.                          ..+...|...|.++
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~--------------------------~~~~~~A~~~~~~a  181 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAV--------------------------AYDDKKALYLYRKA  181 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhcc--------------------------cHHHHhHHHHHHHH
Confidence            555555555555543222 122333443333321 00000                          00123566666665


Q ss_pred             HhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---------------CHHHH
Q 001578          578 LYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG---------------EYREA  638 (1050)
Q Consensus       578 l~~~p~~~~~~~~la~~~~~----~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g---------------~~~eA  638 (1050)
                      ....  ++.+...+|.+|..    ..++.+|..+|.++.+...  ....+.++ ++...|               +...|
T Consensus       182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a  256 (292)
T COG0790         182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQA  256 (292)
T ss_pred             HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHH
Confidence            5443  56677777766654    3367777777777777655  66777777 555555               55556


Q ss_pred             HHHHHHHHHhcCC
Q 001578          639 IKDYDAALDLELD  651 (1050)
Q Consensus       639 ~~~~~~al~l~p~  651 (1050)
                      ...+..+....+.
T Consensus       257 ~~~~~~~~~~~~~  269 (292)
T COG0790         257 LEWLQKACELGFD  269 (292)
T ss_pred             HHHHHHHHHcCCh
Confidence            6666655555443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.67  E-value=0.63  Score=51.62  Aligned_cols=169  Identities=20%  Similarity=0.081  Sum_probs=113.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Q 001578          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA--  461 (1050)
Q Consensus       388 a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--  461 (1050)
                      +......+++..|...+..+-..  .++.+...++.+|...    .+..+|..+|..+  ....++.+.+.+|.+|..  
T Consensus        48 ~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~  123 (292)
T COG0790          48 GAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGR  123 (292)
T ss_pred             cccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCC
Confidence            34445678999999999988762  3347888888888764    4688899999954  446678889999999987  


Q ss_pred             --cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 001578          462 --LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS--  529 (1050)
Q Consensus       462 --~g~~~eA~~~l~kal~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~--  529 (1050)
                        ..+..+|..+|+++.+..-.. ....+.+|.+|..-.       +...|+..|.++....  +..+...+|.+|..  
T Consensus       124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~  201 (292)
T COG0790         124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL  201 (292)
T ss_pred             CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC
Confidence              459999999999999886433 344778888776642       2225666666665544  45555566655543  


Q ss_pred             --cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Q 001578          530 --IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (1050)
Q Consensus       530 --~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g  565 (1050)
                        ..++.+|..+|.++.+...  ....+.++ ++...|
T Consensus       202 Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         202 GVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence              2355666666666655544  55555555 444333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.65  E-value=0.04  Score=54.20  Aligned_cols=113  Identities=22%  Similarity=0.171  Sum_probs=73.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 001578          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS-EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (1050)
Q Consensus       523 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~  601 (1050)
                      .|......++.+.++..+.+++.+.....-.-..       ...+ ......++..      ...+...++..+...|++
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~   78 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDY   78 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCH
Confidence            3445556677777777777777765332100000       0111 1111222221      134566788888999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       602 ~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      ++|+..+++++..+|.+..++..+..+|...|+..+|+..|++....
T Consensus        79 ~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   79 EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.63  E-value=0.1  Score=52.44  Aligned_cols=119  Identities=22%  Similarity=0.089  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhCcCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHH
Q 001578          535 KAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDL  608 (1050)
Q Consensus       535 eA~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eAi~~l  608 (1050)
                      +.....++....++...   -+...++..+.+.+++++|+..++.++....+.   .-+-.++|.+...+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44445555555554443   334567888999999999999999988654432   345678899999999999999988


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH
Q 001578          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ....... -.+..-...|.++...|+.++|+..|+++++.+++.+.
T Consensus       150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA  194 (207)
T ss_pred             hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence            7543211 12344667899999999999999999999999866554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.60  E-value=0.053  Score=49.45  Aligned_cols=89  Identities=19%  Similarity=0.174  Sum_probs=70.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcc---CCc----------HHHHHHHHHHHHhhCHHHHHHHHHHHH-------HhCC-
Q 001578           42 ELAKLCSLRNWSKAIRILDSLLAQS---YEI----------QDICNRAFCYSQLELHKHVIRDCDKAL-------QLDP-  100 (1050)
Q Consensus        42 ~~~~~~~~~~~~~Ai~~y~~ai~~~---~~~----------~~~~nra~~~~~~~~~~~Ai~~~~~Al-------~l~P-  100 (1050)
                      ++-+-+..|-|++|..-|.+|++..   |..          -++..++.++..+|+|++++...++||       +++. 
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd   94 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD   94 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence            4556678899999999999999876   221          225678889999999999999999988       3443 


Q ss_pred             ---CChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          101 ---TLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (1050)
Q Consensus       101 ---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al  130 (1050)
                         .++.+.+.+|.++..+|+.++|+..|+.+-
T Consensus        95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence               357799999999999999999999999994

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.21  Score=60.92  Aligned_cols=211  Identities=19%  Similarity=0.127  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      +..|..+|.+.++.|...+|++.|-++     +++..|.....+..+.|.|++-+.++.-|-+... .+.+-..+..+|.
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYA 1177 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHH
Confidence            444444455555555555555444433     3344444444444444555554444444333211 1111122222333


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (1050)
Q Consensus       461 ~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l  540 (1050)
                      +.++..+-.+.+     ..|+.+. .-..|.-++..+.|+.|.-+|..        ..-+..++..+..+|+|..|....
T Consensus      1178 kt~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred             HhchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            333333322211     1233322 23456666677777777666654        344667888888888888888877


Q ss_pred             HHHHHhCc-------------------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578          541 LKAIQLDR-------------------------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (1050)
Q Consensus       541 ~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~  595 (1050)
                      ++|-....                         -+++-+-.+...|...|-+++-+..++.++.+...+-..+..+|.+|
T Consensus      1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred             hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence            77633210                         01344456777889999999999999999988877777788888887


Q ss_pred             HHCCCHHHHHHHHHHHH
Q 001578          596 HGLGQHKKAIKDLSSGL  612 (1050)
Q Consensus       596 ~~~g~~~eAi~~l~~al  612 (1050)
                      .+- ++++-.++++-..
T Consensus      1324 sky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred             Hhc-CHHHHHHHHHHHH
Confidence            654 4666666665443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.53  E-value=0.0021  Score=69.21  Aligned_cols=95  Identities=27%  Similarity=0.384  Sum_probs=83.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 001578          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (1050)
Q Consensus       386 ~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  465 (1050)
                      ..+...+..|.+++|++.|..++.++|.....+..++.++..+++...|+..+..++.++|+....|-..+.+...+|++
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34556778888999999999999999999999999999999999999999999999999999988888889999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 001578          466 VEAIQDLSKALEFEP  480 (1050)
Q Consensus       466 ~eA~~~l~kal~~~p  480 (1050)
                      ++|..++..+.+++-
T Consensus       199 e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  199 EEAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999888754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.41  E-value=0.069  Score=52.47  Aligned_cols=116  Identities=16%  Similarity=0.077  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      +...|......|+...++..+++++.......-.-..-      ..=.......+...      ...+...++..+...|
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~   76 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAG   76 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence            34456666778889999999999987653321000000      00011111122221      2345556777777788


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (1050)
Q Consensus       464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~  511 (1050)
                      ++++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++..
T Consensus        77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888887777654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.18  E-value=0.019  Score=68.64  Aligned_cols=123  Identities=21%  Similarity=0.258  Sum_probs=104.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-----cHHHHHHHHHHHHh--hCHHHHHHHHHHHHHhC
Q 001578           27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----IQDICNRAFCYSQL--ELHKHVIRDCDKALQLD   99 (1050)
Q Consensus        27 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-----~~~~~nra~~~~~~--~~~~~Ai~~~~~Al~l~   99 (1050)
                      ..+..++..+...+.++++.|++++|..|.--|..++...|.     ...+.|.+.||..+  ++|.+++.+|+-|+...
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~  123 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ  123 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence            567788889999999999999999999999999998887742     23378899988865  59999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhHHHHHHHHHH
Q 001578          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (1050)
Q Consensus       100 P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~l~~l~~~  149 (1050)
                      |...++++.++.+|..+++++-|++++.-.....|..+.....+.++.-.
T Consensus       124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999888888888886665544444433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.17  E-value=0.29  Score=55.02  Aligned_cols=124  Identities=12%  Similarity=-0.053  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH
Q 001578          568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA---IGEYREAIKDYDA  644 (1050)
Q Consensus       568 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~~~~  644 (1050)
                      +.-+.+|++|++.+|++...+..+-.+..+..+.++...-+++++..+|++...|..+-.....   .-.+......|.+
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            4455666666666776666666666666666666666666777777777666665544333322   2235555555555


Q ss_pred             HHHhcCC-----------CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC
Q 001578          645 ALDLELD-----------SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP  691 (1050)
Q Consensus       645 al~l~p~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p  691 (1050)
                      ++..-..           -+..-......+.+....+...|..+.|+..++-.++++=
T Consensus       128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            5543211           1122223344566667777889999999999988777653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.13  E-value=0.25  Score=49.72  Aligned_cols=97  Identities=20%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001578          452 WKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (1050)
Q Consensus       452 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  528 (1050)
                      -..+|..+...|++++|+..++.++....+.   .-+-..++.+...+|.+++|+..+...... .-.+......|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHH
Confidence            3456667777777777777777776543322   234556777777777777777766543211 001223445677777


Q ss_pred             HcCCHHHHHHHHHHHHHhCcC
Q 001578          529 SIGEYKKAEEAHLKAIQLDRN  549 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~p~  549 (1050)
                      ..|+-++|...|.++++..++
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         171 AKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCC
Confidence            777777777777777777643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.13  E-value=0.011  Score=41.81  Aligned_cols=32  Identities=34%  Similarity=0.682  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      .+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777788888888888888888888887774

...

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.12  E-value=0.22  Score=52.06  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001578          429 RELEAAISDFTEAIQSNPSAG----EAWKRRGQARAALGESVEAIQDLSKALE  477 (1050)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~  477 (1050)
                      .+.++|+..|++++++.+...    .++..+..+++.++++++-++.|.+.+.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            467777777777777776543    3555666677777777777777766654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.11  E-value=2.7  Score=56.74  Aligned_cols=303  Identities=14%  Similarity=0.096  Sum_probs=173.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCCH
Q 001578          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG-QARAALGES  465 (1050)
Q Consensus       387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~  465 (1050)
                      +-......|++..|..+|++++..+|+....+...-...+..|.+...+...+-.....++...-++.++ .+....+++
T Consensus      1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred             HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence            3444556789999999999999998888777777777777778888887776665554444444333332 233555555


Q ss_pred             HHHHHHHH-------------H-HHhhCCCCHHHH-HHHHHHH----------HHcCCHHHHHHHHHHHHHh--------
Q 001578          466 VEAIQDLS-------------K-ALEFEPNSADIL-HERGIVN----------FKFKDFNAAVEDLSACVKL--------  512 (1050)
Q Consensus       466 ~eA~~~l~-------------k-al~~~p~~~~~~-~~lg~~~----------~~~g~~~~A~~~l~~al~~--------  512 (1050)
                      +.-..++.             + .+.....+.-.. ..+...-          ...|-|..+.++.-++..+        
T Consensus      1535 D~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1535 DLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred             hhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444422             0 011111111100 0110000          0111222333222222110        


Q ss_pred             -----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cc----CcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001578          513 -----DKEN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQL---DR----NFLEAWGHLTQFYQDLANSEKALECLQ  575 (1050)
Q Consensus       513 -----~p~~-----~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~l~  575 (1050)
                           .+++     ..-|.+....-....+..+-+-.+++++-.   +|    ...+.|...|++....|.++.|..++-
T Consensus      1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred             HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                 1111     122222222222222344445555554322   22    337899999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC----------C------HHHHHHHHHHHHHccCH--H
Q 001578          576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PS----------N------IECLYLRASCYHAIGEY--R  636 (1050)
Q Consensus       576 ~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~  636 (1050)
                      +|.+..  -+.++...|..+...|+...|+..+++.++.+ |+          .      ..+.+.++.-....|++  .
T Consensus      1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred             hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence            988776  57899999999999999999999999999653 22          1      12344555555666664  3


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH------HHHHhcCHHH---HHHHHHHhhccCCC
Q 001578          637 EAIKDYDAALDLELDSMEKFVLQCLAFYQKEI------ALYTASKINS---EFCWFDIDGDIDPL  692 (1050)
Q Consensus       637 eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~------~~~~~~~~~~---A~~~l~~a~~l~p~  692 (1050)
                      +-+++|..+.++.|...+.+++++. ||.+-.      ...+.|++..   ++..|.+++.....
T Consensus      1773 ~ilk~Y~~~~ail~ewe~~hy~l~~-yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWEDKHYHLGK-YYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred             HHHHHHHHHHHHcccccCceeeHHH-HHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcch
Confidence            4578999999999976665555542 222211      1223444444   55555566554433

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.07  E-value=0.26  Score=56.17  Aligned_cols=168  Identities=14%  Similarity=0.005  Sum_probs=89.4

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HH
Q 001578          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---AD  484 (1050)
Q Consensus       408 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~  484 (1050)
                      +..+|.+.+++..++.++..+|+.+.|.+.+++|+-.........+..-..-...|.-   .--     -..+.|   -.
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~-----~~~~eNR~ffl  104 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLD-----YRRPENRQFFL  104 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccC-----CccccchHHHH
Confidence            4567777777777777777777777777777776532110000000000000000000   000     001122   22


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHHHHH
Q 001578          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGHL  557 (1050)
Q Consensus       485 ~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~-~~~-~~~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~~~~~~~l  557 (1050)
                      +++.....+.+.|-+..|+++.+-.+.++|. ++- +++.+-....+.++++--+..++.......     ..+...+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            4444555666667777777777777777766 543 334444444555666655555555443111     123455666


Q ss_pred             HHHHHHcCCh---------------HHHHHHHHHHHhhCCC
Q 001578          558 TQFYQDLANS---------------EKALECLQQVLYIDKR  583 (1050)
Q Consensus       558 a~~~~~~g~~---------------~~A~~~l~~al~~~p~  583 (1050)
                      +.++...++-               ++|...+.+|+...|.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            6777777776               7888888888887764

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.06  E-value=1.3  Score=52.09  Aligned_cols=179  Identities=13%  Similarity=0.044  Sum_probs=103.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (1050)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (1050)
                      +...+..|..+|...+..-.++.|...|-++-.. |.-         ..--...|.+-..-|++++|.+.|-.+-..+  
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence            4456888989998888888888888777665321 111         0001234445555688888888776542211  


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001578          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (1050)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~  525 (1050)
                            .-..++...|++-...++++..-.-..  ...+++.++|..+..+..+++|.++|...-.        .-++..
T Consensus       765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~e  830 (1189)
T KOG2041|consen  765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIE  830 (1189)
T ss_pred             ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHH
Confidence                  122345556666665555543221111  1145777888888888888888888766422        123445


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (1050)
Q Consensus       526 ~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~  576 (1050)
                      +++...+|++-.    .....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus       831 cly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  831 CLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            555555555432    22333456666666666666666666666666543

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.65  Score=53.68  Aligned_cols=252  Identities=13%  Similarity=0.119  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSAC  509 (1050)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~l~~a  509 (1050)
                      +...+.+.......|..+......+..+...|+.+.|+..++..+...-.  ..-.++.+|.++.-+.+|..|...+...
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L  329 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL  329 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44455555556667887777777888888888877777777777661111  1235667778888888888888888877


Q ss_pred             HHhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001578          510 VKLDKENKSAYTYLG-LALSS--------IGEYKKAEEAHLKA---IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (1050)
Q Consensus       510 l~~~p~~~~~~~~la-~~~~~--------~g~~~eA~~~l~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a  577 (1050)
                      ...+.-....|..++ .|+..        .|+-+.|-.+++..   +...|.+...--.+         ..+|.++-.+.
T Consensus       330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~---------~RKverf~~~~  400 (546)
T KOG3783|consen  330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI---------VRKVERFVKRG  400 (546)
T ss_pred             HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH---------HHHHHHHhccc
Confidence            776655555555554 33322        22333333333222   22222221110000         01111111111


Q ss_pred             HhhCCCCHH--HHHHHHHHHHH--CCCHHHHHHHHHHHH---hc-CCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          578 LYIDKRFSK--AYHLRGLLLHG--LGQHKKAIKDLSSGL---GI-DPSNI-ECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       578 l~~~p~~~~--~~~~la~~~~~--~g~~~eAi~~l~~al---~~-~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                      - .++....  .++.++.++..  ....++.. -++..+   +. ++++. --++.+|.++..+|+-..|..+|..+++.
T Consensus       401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~  478 (546)
T KOG3783|consen  401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK  478 (546)
T ss_pred             c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            0 1111111  12333333321  12222222 111111   12 23322 24567899999999999999999999854


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhhccCCCCH
Q 001578          649 ELDSMEKFVLQCLAFYQKEIALYTASK-INSEFCWFDIDGDIDPLFK  694 (1050)
Q Consensus       649 ~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~l~~a~~l~p~~~  694 (1050)
                      .-....-.+....++|.+|..+...+. +.++..++.+|.++..++.
T Consensus       479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~  525 (546)
T KOG3783|consen  479 ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE  525 (546)
T ss_pred             HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence            322222233445789999999999888 9999999999988765543

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.03  E-value=0.44  Score=53.62  Aligned_cols=135  Identities=13%  Similarity=0.004  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 001578          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS---IGEYKKAEEAHLK  542 (1050)
Q Consensus       466 ~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~~  542 (1050)
                      +.-+.+|++|++.+|++..++..+-.+..+..+.++..+.+++++..+|++...|..+-.....   .-.++.....|.+
T Consensus        48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            4455667777777777777666666666666666777777777777777766665544333222   2245566666666


Q ss_pred             HHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 001578          543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (1050)
Q Consensus       543 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p  616 (1050)
                      ++..-.......          .........++.      ....++..+...+.+.|..+.|+..++..++++-
T Consensus       128 ~l~~L~~~~~~~----------~~~~~~~~~~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  128 CLRALSRRRSGR----------MTSHPDLPELEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHhhccc----------cccccchhhHHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            554321110000          000000000000      1134566777778888888888888888888753

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.92  E-value=0.29  Score=55.79  Aligned_cols=163  Identities=15%  Similarity=0.045  Sum_probs=113.6

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-----H--HHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH-----E--RGIVNFKFKDFNAAVEDLSACVKLD  513 (1050)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~-----~--lg~~~~~~g~~~~A~~~l~~al~~~  513 (1050)
                      .++.+|-+.+++..++.++..+|+...|.+++++|+-.........+     .  .|.+...-.               .
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~---------------~   96 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR---------------R   96 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc---------------c
Confidence            35678888888889999999999988888888888754321111111     0  011111000               1


Q ss_pred             CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C
Q 001578          514 KENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLE-AWGHLTQFYQDLANSEKALECLQQVLYIDK-----R  583 (1050)
Q Consensus       514 p~~~---~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~  583 (1050)
                      +.|.   .+++.....+.+.|-+..|.++.+-.+.++|. ++- +.+.+-....+.++++--++.++.......     .
T Consensus        97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~  176 (360)
T PF04910_consen   97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL  176 (360)
T ss_pred             ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence            2232   35566778889999999999999999999998 654 444455556677888888888877655211     1


Q ss_pred             CHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHhcCCCC
Q 001578          584 FSKAYHLRGLLLHGLGQH---------------KKAIKDLSSGLGIDPSN  618 (1050)
Q Consensus       584 ~~~~~~~la~~~~~~g~~---------------~eAi~~l~~al~~~p~~  618 (1050)
                      .|...+..+.++...++-               ++|...+.+|+...|.-
T Consensus       177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            345677888888888888               89999999999998763

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.70  E-value=0.037  Score=43.61  Aligned_cols=42  Identities=26%  Similarity=0.222  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 001578           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (1050)
Q Consensus        71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~  112 (1050)
                      +++.+|.++.++|+|.+|...++.+|+.+|++.+|.-.+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            567789999999999999999999999999998887766544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.63  E-value=0.04  Score=60.81  Aligned_cols=103  Identities=15%  Similarity=0.237  Sum_probs=82.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-----------cHH--------HHHHHHHHHHhhCH
Q 001578           25 ELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----------IQD--------ICNRAFCYSQLELH   85 (1050)
Q Consensus        25 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~Ai~~y~~ai~~~~~-----------~~~--------~~nra~~~~~~~~~   85 (1050)
                      .++++|.-.-.+..   ++...|++++|..|+..|..|+++...           ...        -..+..||+++++.
T Consensus       168 ~~PqiDkwl~vAL~---das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp  244 (569)
T PF15015_consen  168 FLPQIDKWLQVALK---DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP  244 (569)
T ss_pred             cChhHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC
Confidence            34555555433332   456779999999999999999977511           111        23678899999999


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578           86 KHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (1050)
Q Consensus        86 ~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al  130 (1050)
                      +-|+...-+.|-++|.+..-|.+.+.|+..+.+|.+|...+-.|.
T Consensus       245 dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  245 DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.61  E-value=0.024  Score=39.97  Aligned_cols=31  Identities=39%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 001578          104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (1050)
Q Consensus       104 ~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~  134 (1050)
                      ++++.+|.+|..+|++++|+..|++++++.|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4566777777777777777777777755544

...

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.42  Score=55.15  Aligned_cols=244  Identities=16%  Similarity=0.072  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKA  475 (1050)
Q Consensus       398 ~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~ka  475 (1050)
                      +...+.+.......|..+...+..+..+...|+.+.|+..++..+...-.  ..-.++.+|.++..+.+|..|...+...
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L  329 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL  329 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45555556666778999999999999999999988899998888761111  1335678888999999999999999998


Q ss_pred             HhhCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001578          476 LEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSACV---KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (1050)
Q Consensus       476 l~~~p~~~~~~~~lg-~~~~~--------~g~~~~A~~~l~~al---~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  543 (1050)
                      .+...-..-.|..++ .+++.        .|+-+.|..+++...   ...|.+...-..         -..+|.++-.+.
T Consensus       330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~~~  400 (546)
T KOG3783|consen  330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVKRG  400 (546)
T ss_pred             HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhccc
Confidence            887765544444444 44432        234444444433332   222222111000         011222211111


Q ss_pred             HHhCcCcHH--HHHHHHHHHHHc--CChHHHHHHHHHHHh---h-CCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 001578          544 IQLDRNFLE--AWGHLTQFYQDL--ANSEKALECLQQVLY---I-DKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (1050)
Q Consensus       544 l~~~p~~~~--~~~~la~~~~~~--g~~~~A~~~l~~al~---~-~p~~~-~~~~~la~~~~~~g~~~eAi~~l~~al~~  614 (1050)
                      - .++..+.  .++.++.++...  ...++.. -++..++   . ++++. --+..+|.++..+|+...|..+|..+++.
T Consensus       401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~  478 (546)
T KOG3783|consen  401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK  478 (546)
T ss_pred             c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            0 1111111  223333333221  1222222 1222221   1 22222 24667899999999999999999988843


Q ss_pred             C---CC----CHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCC
Q 001578          615 D---PS----NIECLYLRASCYHAIGE-YREAIKDYDAALDLELDS  652 (1050)
Q Consensus       615 ~---p~----~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~p~~  652 (1050)
                      .   ..    .|.++|.+|.+|..+|. ..+|..++.+|-+...++
T Consensus       479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  479 ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            1   11    26799999999999999 999999999998877543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.53  E-value=2  Score=48.38  Aligned_cols=123  Identities=8%  Similarity=-0.087  Sum_probs=73.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 001578          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ-FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~  607 (1050)
                      +..-.+.|...|.++-+..-...+++..-|. -+...|++.-|-..|+-.+...|+.+..-...-..+...++-..|...
T Consensus       409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraL  488 (660)
T COG5107         409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARAL  488 (660)
T ss_pred             HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence            3344566666666665543222333332222 244577788888888888877777766666666666777777778888


Q ss_pred             HHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          608 LSSGLGIDPSN--IECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       608 l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      |++++..-...  ...|-.+-..-..-|+...+...=++..++.|.
T Consensus       489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ  534 (660)
T COG5107         489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ  534 (660)
T ss_pred             HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence            87776543222  334444444444556666666666666666654

>PRK10941 hypothetical protein; Provisional

Probab=95.48  E-value=0.098  Score=56.65  Aligned_cols=69  Identities=16%  Similarity=0.090  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHhH
Q 001578           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL  140 (1050)
Q Consensus        72 ~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~  140 (1050)
                      +.|+-.+|.+.++++.|++.++..+.++|+.+.-+--+|.+|.++|.+..|+.+|+.-++.+|+.|...
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            567888999999999999999999999999998888899999999999999999999999999998653

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.14  E-value=3.1  Score=46.97  Aligned_cols=241  Identities=10%  Similarity=-0.005  Sum_probs=150.6

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578          368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (1050)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (1050)
                      +....+..-.+..++.|+.....+...++-+.|+....+++...|.   ....++.+|....+-+....+|+++.+.-. 
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~-  364 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK-  364 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH-
Confidence            4445555556667778888777777788888887777777665554   566677777766666666666666543100 


Q ss_pred             cHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001578          448 AGEAWKRRGQARAA---LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (1050)
Q Consensus       448 ~~~~~~~la~~~~~---~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la  524 (1050)
                         --+..+..-..   .|+++...+++-+-..   ...-++..+-....+..-.+.|...|-++-+..--...++..-|
T Consensus       365 ---r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A  438 (660)
T COG5107         365 ---RKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCA  438 (660)
T ss_pred             ---HHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHH
Confidence               00000100000   1223222222221111   12223333334444555577777888777665433444555444


Q ss_pred             HH-HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCH
Q 001578          525 LA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQH  601 (1050)
Q Consensus       525 ~~-~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~  601 (1050)
                      .+ +...|++.-|...|+-.+...|+.+......-..+...++-..|..+|+.++..-...  ..+|..+-..-..-|+.
T Consensus       439 ~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~l  518 (660)
T COG5107         439 FIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSL  518 (660)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence            44 5678999999999999999999998777777788889999999999999887653332  45566666666677888


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 001578          602 KKAIKDLSSGLGIDPSN  618 (1050)
Q Consensus       602 ~eAi~~l~~al~~~p~~  618 (1050)
                      ..++..=++..+..|..
T Consensus       519 N~v~sLe~rf~e~~pQe  535 (660)
T COG5107         519 NNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHhHHHHHHHHcCcH
Confidence            77777777777777763

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.10  E-value=0.037  Score=38.57  Aligned_cols=33  Identities=36%  Similarity=0.654  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      ++++.+|.++...|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            356777778877778888888888887777763

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.05  E-value=1.2  Score=46.74  Aligned_cols=51  Identities=14%  Similarity=0.121  Sum_probs=43.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          393 NEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQ  443 (1050)
Q Consensus       393 ~~g~~~~Ai~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~  443 (1050)
                      ...+.++|+.-|++++++.+..    ..++..+..+++.+++|++-+..|.+.+.
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3458999999999999998875    35777888899999999999999998774

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.89  E-value=0.041  Score=39.61  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 001578          105 AYILKGCAFSALGRKEEALSVWEKGYEHA  133 (1050)
Q Consensus       105 a~~~~g~~~~~lg~~~~A~~~~~~al~~~  133 (1050)
                      ++..+|.+|..+|++++|+..|++++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57788899999999999999999875443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.69  E-value=0.039  Score=39.69  Aligned_cols=29  Identities=34%  Similarity=0.544  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          621 CLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       621 ~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      ++.++|.+|..+|++++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            35667777777777777777777755544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.67  E-value=0.097  Score=55.53  Aligned_cols=62  Identities=24%  Similarity=0.236  Sum_probs=37.5

Q ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (1050)
Q Consensus       596 ~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  657 (1050)
                      ...|+.++|...|+.|+.++|.+++++..+|.......+.-+|-.+|-+|+.++|.+.++..
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            34566666666666666666666666666666666556666666666666666666655443

>PRK10941 hypothetical protein; Provisional

Probab=94.61  E-value=0.25  Score=53.51  Aligned_cols=70  Identities=14%  Similarity=0.017  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (1050)
Q Consensus       587 ~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  656 (1050)
                      ...++-.+|.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            4556677778888888888888888888888888888888888888888888888888888888887754

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.56  E-value=0.85  Score=41.91  Aligned_cols=91  Identities=18%  Similarity=0.314  Sum_probs=61.8

Q ss_pred             HHCCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH-------HhcCCCHHHH
Q 001578          596 HGLGQHKKAIKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAIKDYDAAL-------DLELDSMEKF  656 (1050)
Q Consensus       596 ~~~g~~~eAi~~l~~al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al-------~l~p~~~~~~  656 (1050)
                      ...|-|++|...++++++....            +.-++-.|+.++..+|+|++++..-++++       +++.+....|
T Consensus        20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW   99 (144)
T PF12968_consen   20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence            4456777777777777765321            12356667778888888877766655555       4555555545


Q ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 001578          657 VLQCLAFYQKEIALYTASKINSEFCWFDIDGDI  689 (1050)
Q Consensus       657 ~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l  689 (1050)
                      +   .+-+.++.++...|+.++|+..|+++++.
T Consensus       100 I---aaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  100 I---AAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H---HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4   56788999999999999999999998763

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.54  E-value=0.14  Score=40.38  Aligned_cols=37  Identities=35%  Similarity=0.530  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  656 (1050)
                      +.++.+|..+.++|+|++|..+.+.+++++|++..+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4678888888888888888888888888888887654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.39  E-value=0.076  Score=36.96  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001578          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPM  413 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~  413 (1050)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3455555555555555555555555555554

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.37  E-value=18  Score=44.76  Aligned_cols=122  Identities=11%  Similarity=-0.012  Sum_probs=64.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 001578          524 GLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (1050)
Q Consensus       524 a~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g  599 (1050)
                      +..-....+.+.|...+.+......-.    ..++..+|.-....+..++|...+..+..... +.........+....+
T Consensus       248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~  326 (644)
T PRK11619        248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG  326 (644)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence            333344555666776666543333222    22233344333333225566666665443221 2233333333444667


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 001578          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL  646 (1050)
Q Consensus       600 ~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  646 (1050)
                      +++.+...+...-..........|-+|.++...|+.++|..+|+++.
T Consensus       327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            77766666665433333455677777777777777777777777764

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.22  E-value=0.13  Score=54.51  Aligned_cols=75  Identities=25%  Similarity=0.407  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (1050)
                      -+..|.-....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.++.
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            345566667778888888888888888888888888888888887888888888888888888888777665543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.19  E-value=0.45  Score=43.46  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001578          387 RGIAQVNEGKYASAISIFDQILKEDPMYPE---ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       387 ~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~---a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      +|..++..|++-+|+++.+..+..++++..   .+...|.++..+            +......+...-+.+        
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl--------   61 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL--------   61 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH--------
Confidence            466788889999999999999888777653   344445554332            222222222222222        


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (1050)
Q Consensus       464 ~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~  512 (1050)
                         .+++++.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus        62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               3567777888888877778888887777777778888777777765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.12  E-value=3.8  Score=48.54  Aligned_cols=226  Identities=14%  Similarity=0.060  Sum_probs=136.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH----------HHHHHHHHHc
Q 001578          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW----------KRRGQARAAL  462 (1050)
Q Consensus       393 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~  462 (1050)
                      ..-..++|+++.+    .+| ++..|..+|......-.++.|...|-+.-.. +.- ...          ...|.+-.--
T Consensus       675 e~vgledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~  747 (1189)
T KOG2041|consen  675 EAVGLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFY  747 (1189)
T ss_pred             HHhchHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhh
Confidence            3334566665443    344 5889999999888888888888777665321 110 111          2344555556


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAH  540 (1050)
Q Consensus       463 g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l  540 (1050)
                      |++++|.+.|-.+-..   +     ....++.+.|++-...++++..-.-+.+  -..++.++|..+.....+++|.++|
T Consensus       748 g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY  819 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY  819 (1189)
T ss_pred             cchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889988887544221   1     1234455677777666665542211111  2468899999999999999999999


Q ss_pred             HHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------
Q 001578          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG---------  611 (1050)
Q Consensus       541 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a---------  611 (1050)
                      ...-.        .-++..+++...+|++-..+    ...-|++...+-.+|..+...|.-++|.+.|-+.         
T Consensus       820 ~~~~~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~t  887 (1189)
T KOG2041|consen  820 SYCGD--------TENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHT  887 (1189)
T ss_pred             Hhccc--------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHH
Confidence            87532        23456677777777664433    3345677777777777777777777777665432         


Q ss_pred             ----------HhcCC--CCHH---HHHHHHHHHHHccCHHHHHHHHHHH
Q 001578          612 ----------LGIDP--SNIE---CLYLRASCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       612 ----------l~~~p--~~~~---~~~~la~~~~~~g~~~eA~~~~~~a  645 (1050)
                                +++..  .-++   ..-..+.-+.+.++..+|++.++++
T Consensus       888 Cv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  888 CVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence                      11111  1111   2222334455667777888777776

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=11  Score=41.31  Aligned_cols=266  Identities=13%  Similarity=0.067  Sum_probs=165.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCc--H
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKE--DPMY--------PEALIGRGTARAFQRELEAAISDFTEAIQ---SNPSA--G  449 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~--~p~~--------~~a~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~--~  449 (1050)
                      +..+.......++++++..|..++..  .|.+        ......+|..+...|+.++-.......-.   .-+..  .
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            56677777788889999999999874  2221        34678899999999998776555544322   11111  1


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--C
Q 001578          450 EAWKRRGQARA-ALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----DKE--N  516 (1050)
Q Consensus       450 ~~~~~la~~~~-~~g~~~eA~~~l~kal~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~p~--~  516 (1050)
                      .....+-.... ..+....-+..+..+++-....-      ..-..+..+|+..++|.+|+......++-    +..  -
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence            11111222221 12334455555555555433221      23345788899999999999887776543    222  2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHH
Q 001578          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSK  586 (1050)
Q Consensus       517 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~~--~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~  586 (1050)
                      .+.+..-..+|+...+..+|...+..|-...     |...  ..-..-|.++....+|.-|..+|-++++-..   ++..
T Consensus       168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~  247 (411)
T KOG1463|consen  168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK  247 (411)
T ss_pred             eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence            3566667788888888888888887765432     2211  1222335566677899999999999987543   2233


Q ss_pred             H---HHHHHHHHHHCCCHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcC
Q 001578          587 A---YHLRGLLLHGLGQHKKA--IKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       587 ~---~~~la~~~~~~g~~~eA--i~~l~~al~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~l~p  650 (1050)
                      +   +..+-.+-...+..++-  +-.-+.+++....+.++....|.++..  +.+|+.|+..|..-+..+|
T Consensus       248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~  318 (411)
T KOG1463|consen  248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP  318 (411)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence            3   22233333445555554  444455666666778888888888864  4578999999998887766

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.02  E-value=0.74  Score=52.61  Aligned_cols=91  Identities=9%  Similarity=0.007  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh
Q 001578          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLG  613 (1050)
Q Consensus       535 eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~-~~eAi~~l~~al~  613 (1050)
                      .-...|+.|+...+.+...|........+.+.+.+--..|.+++..+|+++..|...|.-.+.-+. .+.|...|.+++.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345567777777777777777776666666667777777777777777777777777666665554 6777777777777


Q ss_pred             cCCCCHHHHHHH
Q 001578          614 IDPSNIECLYLR  625 (1050)
Q Consensus       614 ~~p~~~~~~~~l  625 (1050)
                      .+|+++..|...
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            777777666443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.86  E-value=0.8  Score=45.01  Aligned_cols=85  Identities=18%  Similarity=0.125  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      ...++.....-...++.+++...+..+--+.|..+..-..-|.++...|++.+|+..++.+.+..|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34455566666667777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCH
Q 001578          461 ALGES  465 (1050)
Q Consensus       461 ~~g~~  465 (1050)
                      .+|+.
T Consensus        90 ~~~D~   94 (160)
T PF09613_consen   90 ALGDP   94 (160)
T ss_pred             HcCCh
Confidence            77664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.71  E-value=0.92  Score=44.59  Aligned_cols=98  Identities=17%  Similarity=0.113  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (1050)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~  631 (1050)
                      ..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..|+.+....|..+.+.-.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34455556666677778888777777777888888888888888888888888888888777777777777778888877


Q ss_pred             ccCHHHHHHHHHHHHHhcC
Q 001578          632 IGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       632 ~g~~~eA~~~~~~al~l~p  650 (1050)
                      +|+.. =..+-..+++..+
T Consensus        91 ~~D~~-Wr~~A~evle~~~  108 (160)
T PF09613_consen   91 LGDPS-WRRYADEVLESGA  108 (160)
T ss_pred             cCChH-HHHHHHHHHhcCC
Confidence            77642 1222334444444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.66  E-value=2.1  Score=50.09  Aligned_cols=127  Identities=21%  Similarity=0.115  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 001578          434 AISDFTEAIQSNPSAGEAWKR--RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CV  510 (1050)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~-al  510 (1050)
                      ++..+...+.+++.++..+..  ++..+...+....+.-.+..++..+|.+..+..+++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444444455555544322  244445555555555556666666666666666666555555544444433333 55


Q ss_pred             HhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 001578          511 KLDKENKSAYTYL------GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (1050)
Q Consensus       511 ~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~  560 (1050)
                      ...|.+......+      +.....+|+..++...+.++....|.++.+...+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            5555555443333      5555555555566666666666655554444444333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.61  E-value=2.3  Score=49.83  Aligned_cols=118  Identities=23%  Similarity=0.113  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhCcCcHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HH
Q 001578          536 AEEAHLKAIQLDRNFLEAWGH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS-GL  612 (1050)
Q Consensus       536 A~~~l~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~-al  612 (1050)
                      ++..+...+.+++.++..+..  +...+...++...+.-.+..++..+|.+..+..+++.++...|....++..+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333333333444444433221  233444444554555555555555555555555555555444444443333333 44


Q ss_pred             hcCCCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          613 GIDPSNIECLYLR------ASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       613 ~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      ...|.+.+....+      +..+..+|+..++....+++.++.|.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~  176 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP  176 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence            4455544433333      5555555555555555555555555553

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.59  E-value=17  Score=42.00  Aligned_cols=98  Identities=12%  Similarity=-0.073  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001578          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (1050)
Q Consensus       412 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~  491 (1050)
                      |-+...+..+-.++.......-....+.+.+... .+..+++.++.+|... ..++-....++..+.+-++...-..++.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            4444455555555555555556666677776654 4456677788888777 4556667777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 001578          492 VNFKFKDFNAAVEDLSACVKL  512 (1050)
Q Consensus       492 ~~~~~g~~~~A~~~l~~al~~  512 (1050)
                      .|.. ++...+..+|.+++..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yr  160 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYR  160 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHH
Confidence            7666 7777777777777654

>smart00028 TPR Tetratricopeptide repeats

Probab=93.53  E-value=0.13  Score=34.65  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCCC
Q 001578           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (1050)
Q Consensus        71 ~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~  101 (1050)
                      .+.++|.++..++++++|+..++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556667777777777777777777766664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.52  E-value=4.9  Score=47.25  Aligned_cols=88  Identities=14%  Similarity=0.022  Sum_probs=45.9

Q ss_pred             CcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001578          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (1050)
Q Consensus       547 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la  626 (1050)
                      +....+.+..++..+.....+.-|.++|.+.-.        ...+..++...+++.+|....++.-+.-   +++++-.|
T Consensus       743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pya  811 (1081)
T KOG1538|consen  743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYA  811 (1081)
T ss_pred             chhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHH
Confidence            333444555555555555556666665554321        1223444555666666666555432222   23555556


Q ss_pred             HHHHHccCHHHHHHHHHHH
Q 001578          627 SCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       627 ~~~~~~g~~~eA~~~~~~a  645 (1050)
                      .-+.+..+++||.+.|.+|
T Consensus       812 qwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  812 QWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HHhhhhhhHHHHHHHHHHh
Confidence            6666666666666555554

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.51  E-value=0.54  Score=42.98  Aligned_cols=103  Identities=17%  Similarity=0.116  Sum_probs=69.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 001578          422 GTARAFQRELEAAISDFTEAIQSNPSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (1050)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~  498 (1050)
                      |..++..|++-+|++..+..+...+++..   .+...|.++.            +.+......+....+.+         
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~------------~lA~~ten~d~k~~yLl---------   61 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY------------KLAKKTENPDVKFRYLL---------   61 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH------------HHHHhccCchHHHHHHH---------
Confidence            45566677777777777777766665543   2333333332            22222222233333333         


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578          499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (1050)
Q Consensus       499 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  547 (1050)
                        .+++++.++..+.|..+..++.+|.-+.....|+++....++++.+.
T Consensus        62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence              47789999999999999999999999888888999999999988763

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.48  E-value=0.9  Score=51.24  Aligned_cols=127  Identities=15%  Similarity=0.117  Sum_probs=104.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001578          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (1050)
Q Consensus       391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  470 (1050)
                      ....|+...|-.-...++...|..|......+.+...+|+|+.|...+..+-..-..-..+...+-.....+|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            45678999999999999999999999999999999999999999988877665554445556666677788899999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001578          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (1050)
Q Consensus       471 ~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~  517 (1050)
                      ...-.+.-.-.++++....+.....+|-+++|..++++.+.++|...
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            88888876667777777777777788889999999999999887643

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.27  E-value=13  Score=39.63  Aligned_cols=264  Identities=13%  Similarity=0.087  Sum_probs=154.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhC--CCcHHH
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKEDP--------MYPEALIGRGTARAFQRELEAAISDFTEA---IQSN--PSAGEA  451 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~a~~~la~~~~~~g~~~~A~~~~~~a---l~~~--p~~~~~  451 (1050)
                      +.+|.-....+++++|+..|.+++...-        ....+...++.+|...|++..--+.....   ....  |....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            5677888889999999999999986521        22456788999999999876544433322   2211  111111


Q ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHH
Q 001578          452 WKRRGQAR-AALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKL----D--KENKS  518 (1050)
Q Consensus       452 ~~~la~~~-~~~g~~~eA~~~l~kal~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~l~~al~~----~--p~~~~  518 (1050)
                      ...+-.-+ .....++.-+..+...++.....-      ..-..+..++++.|+|.+|+......+.-    +  +.-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            11111111 112345555555555555433221      23345677888999999999887776543    1  33346


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHH-
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDK---RFSKA-  587 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~~--~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~-  587 (1050)
                      .+..-..+|....+..++...+..|-..     .|....+.  ..-|.......+|.-|..+|-++++-..   .+..+ 
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc  246 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC  246 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence            6777778888888888877777666443     23222222  2335556677889999999998887543   23333 


Q ss_pred             ----HHHHHHHHHHCCCHHHHHHHHH--HHHh-cCCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcC
Q 001578          588 ----YHLRGLLLHGLGQHKKAIKDLS--SGLG-IDPSNIECLYLRASCYH--AIGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       588 ----~~~la~~~~~~g~~~eAi~~l~--~al~-~~p~~~~~~~~la~~~~--~~g~~~eA~~~~~~al~l~p  650 (1050)
                          |..+..+..  +..++.-..++  ..++ .+....++....+.++.  .+.+|..|+..|..-+.-+|
T Consensus       247 ~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~  316 (421)
T COG5159         247 VSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS  316 (421)
T ss_pred             HHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence                233333333  33333333322  2333 23344566666666664  34568888888887766554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.04  E-value=0.96  Score=40.26  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=33.2

Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccC
Q 001578          571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGE  634 (1050)
Q Consensus       571 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~--~~~~~~la~~~~~~g~  634 (1050)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+-.++..+|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            344555556666666666666666666666666666666666655443  3344444444444444

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.00  E-value=0.48  Score=53.32  Aligned_cols=124  Identities=17%  Similarity=0.157  Sum_probs=87.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 001578          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (1050)
Q Consensus       529 ~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l  608 (1050)
                      ..|+.-.|-+-+..++...|.++......+.+...+|+|+.|...+..+-..-.....+...+-.....+|++++|....
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence            45777777777777777777777777777777777788877777766554443333444555556667777888887777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      .-.+...-+++++..--|..-.++|-+++|..++++.+.++|..
T Consensus       381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            77777666667776666666677777788888888888777653

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.87  E-value=52  Score=45.36  Aligned_cols=273  Identities=14%  Similarity=0.123  Sum_probs=151.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHcCCH
Q 001578          421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG-IVNFKFKDF  499 (1050)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg-~~~~~~g~~  499 (1050)
                      .-..+...|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++...-++.++ .+..+.+++
T Consensus      1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred             HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence            3344556788888999999998888887777777777777777777777766665555444444444433 233556666


Q ss_pred             HHHHHHHH-------------H-HHHhCCCCHHHH-HHHHHHH----------HHcCCHHHHHHHHHHHHHh--------
Q 001578          500 NAAVEDLS-------------A-CVKLDKENKSAY-TYLGLAL----------SSIGEYKKAEEAHLKAIQL--------  546 (1050)
Q Consensus       500 ~~A~~~l~-------------~-al~~~p~~~~~~-~~la~~~----------~~~g~~~eA~~~l~~al~~--------  546 (1050)
                      +.-..+..             + .+.....+..+. ..+...-          ...|-|..+.++.-++..+        
T Consensus      1535 D~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~ 1614 (2382)
T KOG0890|consen 1535 DLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIE 1614 (2382)
T ss_pred             hhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            65544422             0 011111111110 0111100          0111222222222221111        


Q ss_pred             -----CcCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 001578          547 -----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLY---ID----KRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (1050)
Q Consensus       547 -----~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~---~~----p~~~~~~~~la~~~~~~g~~~eAi~~l~  609 (1050)
                           .+++     ..-|.+....-....+..+-+-.+++++-   .+    ....+.|...|++....|+++.|..++-
T Consensus      1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred             HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                 1111     12222222222222224444445555432   12    2446889999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--------HHHHHH--HHHHHHHHHHHHHHhcC--HH
Q 001578          610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS--------MEKFVL--QCLAFYQKEIALYTASK--IN  677 (1050)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~--------~~~~~~--~~~~~~~~g~~~~~~~~--~~  677 (1050)
                      .|.+..  -++++...|..+...|+-..|+..+++.++++-.+        +.....  ...+.+..+.-....++  .+
T Consensus      1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~ 1772 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESK 1772 (2382)
T ss_pred             hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHH
Confidence            998876  46899999999999999999999999999765322        111111  11122222222222233  33


Q ss_pred             HHHHHHHHhhccCCCCHH
Q 001578          678 SEFCWFDIDGDIDPLFKE  695 (1050)
Q Consensus       678 ~A~~~l~~a~~l~p~~~e  695 (1050)
                      .-+..|..+.++.|.|.+
T Consensus      1773 ~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1773 DILKYYHDAKAILPEWED 1790 (2382)
T ss_pred             HHHHHHHHHHHHcccccC
Confidence            346677788888886653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.82  E-value=0.97  Score=40.21  Aligned_cols=45  Identities=27%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 001578          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (1050)
Q Consensus       505 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  549 (1050)
                      .+++.+..+|++..+.+.+|..+...|++++|++.+..+++.+++
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            344444445555555555555555555555555555555444443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.72  E-value=24  Score=40.97  Aligned_cols=95  Identities=9%  Similarity=0.039  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhcc-CCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Q 001578           55 AIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEH  132 (1050)
Q Consensus        55 Ai~~y~~ai~~~-~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~-~~~A~~~~~~al~~  132 (1050)
                      =+.+|..|.... .++.++.+-..-.-+.+.+.+.-+.|.++|..+|++++.++-.|.=.+..+. .+.|...|.+++-.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            367899988777 5777777666655556669999999999999999999999998888888887 99999999999999


Q ss_pred             ccCChHhHHHHHHHHHH
Q 001578          133 ALHQSADLKQFLELEEL  149 (1050)
Q Consensus       133 ~~~~~~~~~~l~~l~~~  149 (1050)
                      +|+.|.-.+.-..++..
T Consensus       170 npdsp~Lw~eyfrmEL~  186 (568)
T KOG2396|consen  170 NPDSPKLWKEYFRMELM  186 (568)
T ss_pred             CCCChHHHHHHHHHHHH
Confidence            99999887776665543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.68  E-value=39  Score=43.38  Aligned_cols=131  Identities=21%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWKR  454 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~---~~a~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~  454 (1050)
                      +....+++....|+.|+..|+++-...|..   .++.+..|.....+    |   .+++|+..|++. .-.|.-+--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence            344566778889999999999999998875   46778888877653    2   467777777764 335666777889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC
Q 001578          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-----KDFNAAVEDLSACVKLDKEN  516 (1050)
Q Consensus       455 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~l~~al~~~p~~  516 (1050)
                      .|.+|.++|++++-+++|.-|++..|+.+.+-...-.+.+++     .+-..|....--++...|..
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK  624 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999998876443333332222     12344555555566666654

>smart00028 TPR Tetratricopeptide repeats

Probab=92.57  E-value=0.18  Score=33.97  Aligned_cols=31  Identities=35%  Similarity=0.722  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          621 CLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       621 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      +++.+|.++..+|++++|..+|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.29  E-value=1  Score=57.41  Aligned_cols=133  Identities=14%  Similarity=0.164  Sum_probs=74.8

Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-------  444 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~------~~~~al-~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-------  444 (1050)
                      ....-....|......|.+.+|.+      ++.... .+.|.....+..++.++...|++++|+..-.++.-+       
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            345556677777777888887777      443222 245666777777777777777777777776665432       


Q ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          445 -NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (1050)
Q Consensus       445 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~  511 (1050)
                       .|+....+.+++......++...|+..+.++..+        .|.-+....+++.++...++++.|+.+++.|+.
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             1233445555555555555555555555555443        222233334444444444445555555444444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.21  E-value=12  Score=37.15  Aligned_cols=27  Identities=7%  Similarity=-0.023  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 001578          621 CLYLRASCYHAIGEYREAIKDYDAALD  647 (1050)
Q Consensus       621 ~~~~la~~~~~~g~~~eA~~~~~~al~  647 (1050)
                      +...||..-.+.|++..|...|.....
T Consensus       169 ArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         169 AREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            344444444444444444444444433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=92.15  E-value=0.43  Score=54.50  Aligned_cols=102  Identities=22%  Similarity=0.133  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (1050)
                      ++..+..|.-.+..+....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.....|++++|....+++.++.
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            444445555555666777788888888888888777777777777664   45566777777777777777777778888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC
Q 001578          458 ARAALGESVEAIQDLSKALEFEPNS  482 (1050)
Q Consensus       458 ~~~~~g~~~eA~~~l~kal~~~p~~  482 (1050)
                      ++..++++.+|+.+...+....|.+
T Consensus       454 aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  454 ALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHhhHHHhhhhHHHHhhcCchh
Confidence            8877777777777777766666643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.12  E-value=13  Score=36.87  Aligned_cols=144  Identities=13%  Similarity=-0.062  Sum_probs=106.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHH
Q 001578          487 HERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQF  560 (1050)
Q Consensus       487 ~~lg~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~----~~~~~~la~~  560 (1050)
                      +.-+.-+...+..++|+..|...-+-.-..  .-+....+.+....|+...|+..|.++-...|--    .-+...-+.+
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l  141 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL  141 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence            344555667788999999998876655443  3466778999999999999999999987654321    2344566777


Q ss_pred             HHHcCChHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 001578          561 YQDLANSEKALECLQQVL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (1050)
Q Consensus       561 ~~~~g~~~~A~~~l~~al-~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~  631 (1050)
                      +...|-|+......+..- ..+|-...+...||..-++.|++..|...|..... +.+.+....+++.+...
T Consensus       142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld  212 (221)
T COG4649         142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence            889999998777665532 22444456778899999999999999999998877 55556666677766554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=91.98  E-value=1.3  Score=56.62  Aligned_cols=164  Identities=21%  Similarity=0.244  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Q 001578          485 ILHERGIVNFKFKDFNAAVE------DLS-ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRN  549 (1050)
Q Consensus       485 ~~~~lg~~~~~~g~~~~A~~------~l~-~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~  549 (1050)
                      -....|......|.+.+|.+      .+. ..-.+.|+....+..++.++...|++++|+..-.++.-+        .|+
T Consensus       934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen  934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred             hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence            34556666677777887777      444 223346778889999999999999999999988877544        245


Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----
Q 001578          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYI--------DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----  617 (1050)
Q Consensus       550 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~----  617 (1050)
                      ....+.+++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+++.|++....    
T Consensus      1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred             HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence            5778889999999999999999999988764        3555566788899999999999999999999885321    


Q ss_pred             ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 001578          618 ----NIECLYLRASCYHAIGEYREAIKDYDAALDL  648 (1050)
Q Consensus       618 ----~~~~~~~la~~~~~~g~~~eA~~~~~~al~l  648 (1050)
                          ....+..++.++..++++..|....+....+
T Consensus      1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence                2345666777777777777777766666554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.79  E-value=1.4  Score=46.31  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHCCCHH-------HHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 001578          585 SKAYHLRGLLLHGLGQHK-------KAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g~~~-------eAi~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                      +..+..+|++|..+|+.+       .|+..|.++++....      ...+.+.+|.+..+.|++++|..+|.+++...-.
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            345666677777776643       355555555543321      2467888999999999999999999999876544


Q ss_pred             C
Q 001578          652 S  652 (1050)
Q Consensus       652 ~  652 (1050)
                      +
T Consensus       198 s  198 (214)
T PF09986_consen  198 S  198 (214)
T ss_pred             C
Confidence            3

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.54  E-value=2.7  Score=39.85  Aligned_cols=73  Identities=22%  Similarity=0.242  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 001578          585 SKAYHLRGLLLHGLG---QHKKAIKDLSSGLG-IDPS-NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g---~~~eAi~~l~~al~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  657 (1050)
                      ....+++|+++....   +..+.+..++..++ -.|. .-+..|.+|..+.++++|+.|+.+.+..++.+|++.++..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            466778888887654   45667888888886 4443 3568888999999999999999999999999999887543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.22  E-value=2.9  Score=42.49  Aligned_cols=97  Identities=13%  Similarity=0.006  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001578          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (1050)
Q Consensus       586 ~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~  662 (1050)
                      .++..+|..|.+.|+.++|++.|.++.......   .+.++.+..+....|++.....+..++-.+-.. ...+......
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence            567778888888888888888888876654322   456677777778888888888888887766433 2223344444


Q ss_pred             HHHHHHHHHHhcCHHHHHHHH
Q 001578          663 FYQKEIALYTASKINSEFCWF  683 (1050)
Q Consensus       663 ~~~~g~~~~~~~~~~~A~~~l  683 (1050)
                      ....|+.+...++|..|-..|
T Consensus       116 k~~~gL~~l~~r~f~~AA~~f  136 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELF  136 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHH
Confidence            555677777778888888877

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.57  E-value=2.8  Score=40.59  Aligned_cols=83  Identities=12%  Similarity=-0.009  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001578          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (1050)
Q Consensus       383 ~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (1050)
                      .+..........++.+++..++..+--+.|+.+..-..-|.++...|++.+|+..++...+..+..+.+.-.++.|+..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34444445555777777777777777777887777777788888888888888888877777666676666777777776


Q ss_pred             CCH
Q 001578          463 GES  465 (1050)
Q Consensus       463 g~~  465 (1050)
                      |+.
T Consensus        92 ~Dp   94 (153)
T TIGR02561        92 GDA   94 (153)
T ss_pred             CCh
Confidence            663

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=90.56  E-value=0.32  Score=49.86  Aligned_cols=60  Identities=18%  Similarity=0.308  Sum_probs=44.5

Q ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 001578          594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       594 ~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      ...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|...|++.++++|++.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            344567777777777777777777777777777777777777777777777777777653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.45  E-value=3.1  Score=40.32  Aligned_cols=81  Identities=19%  Similarity=0.128  Sum_probs=60.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 001578          555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (1050)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~  634 (1050)
                      ..+...-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..|+...+-.+..+...-.++.|+..+|+
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            33344444577777777777777777788888777788888888888888888888777777777777777888877777


Q ss_pred             H
Q 001578          635 Y  635 (1050)
Q Consensus       635 ~  635 (1050)
                      .
T Consensus        94 p   94 (153)
T TIGR02561        94 A   94 (153)
T ss_pred             h
Confidence            4

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.31  E-value=2.4  Score=44.49  Aligned_cols=65  Identities=26%  Similarity=0.263  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 001578          551 LEAWGHLTQFYQDLANSE-------KALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (1050)
Q Consensus       551 ~~~~~~la~~~~~~g~~~-------~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~  615 (1050)
                      +..+..+|.+|...|+.+       .|++.|+++++...      +...+.+.+|.+..+.|++++|+.+|.+++...
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            344455555565555533       34444444443321      224567788888888888888888888888754

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.21  E-value=3.2  Score=42.22  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=9.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 001578          490 GIVNFKFKDFNAAVEDLSAC  509 (1050)
Q Consensus       490 g~~~~~~g~~~~A~~~l~~a  509 (1050)
                      |..++..++|..|.+.|-.+
T Consensus       120 gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  120 GLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHhchHHHHHHHHHcc
Confidence            44444455555555554444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=90.14  E-value=32  Score=37.55  Aligned_cols=51  Identities=16%  Similarity=0.074  Sum_probs=24.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (1050)
Q Consensus       391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~  443 (1050)
                      ..+..+..+-++....+++++|..+.++..+|.--  ..-..+|...+.++++
T Consensus       194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALk  244 (556)
T KOG3807|consen  194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALK  244 (556)
T ss_pred             HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHH
Confidence            34444555555555555556655555555554321  1123344455555443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=89.99  E-value=26  Score=39.52  Aligned_cols=135  Identities=13%  Similarity=0.002  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 001578          382 DFRLSRGIAQVNEGKYASAISIFDQILKED-PM--------YPEALIGRGTARAFQRELEAAISDFTEAIQSNP------  446 (1050)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~-p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p------  446 (1050)
                      ..++.....++.+.++.+|..+-+..+..- -.        .+..|+.+..+|...|+...-...+...+....      
T Consensus       127 Y~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e  206 (493)
T KOG2581|consen  127 YLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE  206 (493)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch
Confidence            344445555666788999988887766421 11        144567777777777876666555555444321      


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001578          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFE--P--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (1050)
Q Consensus       447 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p--~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~  516 (1050)
                      ........+-+.|...+.|+.|.....+..--.  .  .-+..++.+|.+..-+++|..|.+++-+|+...|.+
T Consensus       207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            112334455666777777777777666553111  1  124466677888888888888888888888888764

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.75  E-value=22  Score=41.82  Aligned_cols=48  Identities=17%  Similarity=0.055  Sum_probs=29.2

Q ss_pred             CCHHHHHHHHHHHHhhC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          463 GESVEAIQDLSKALEFE------------PNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (1050)
Q Consensus       463 g~~~eA~~~l~kal~~~------------p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al  510 (1050)
                      .-|++|...|.-+....            |-+.+.+..++.+...+|+.+-|.....+++
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L  311 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL  311 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            34667777766665542            3335556666666666666666666666654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.73  E-value=0.44  Score=48.93  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=52.6

Q ss_pred             HHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 001578           78 CYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (1050)
Q Consensus        78 ~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~  136 (1050)
                      ...+.++...|...+.+|+++.|.+...++|+|.--.+-|+++.|.+.|++.+++.|+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45677889999999999999999999999999999999999999999999998777765

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.58  E-value=22  Score=41.87  Aligned_cols=49  Identities=18%  Similarity=0.186  Sum_probs=35.3

Q ss_pred             cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001578          394 EGKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (1050)
Q Consensus       394 ~g~~~~Ai~~~~~al~~------------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al  442 (1050)
                      ...|++|...|.-+...            .|.+.+.++.++.+...+|+.+-|....++++
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L  311 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL  311 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            34567777777766543            36667788888888888888887777777765

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.48  E-value=48  Score=38.59  Aligned_cols=224  Identities=12%  Similarity=-0.048  Sum_probs=128.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001578          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (1050)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (1050)
                      +.+-..+..+-..+-..-...-...++.+.+... .+-.+++.++.+|... ..++-...+++..+.+-++...-..++.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            3333344444444444444555566777777655 5578899999999988 5577788899999998888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC-C--CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcC
Q 001578          458 ARAALGESVEAIQDLSKALEFE-P--NSADILHERGIVNF-KFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIG  531 (1050)
Q Consensus       458 ~~~~~g~~~eA~~~l~kal~~~-p--~~~~~~~~lg~~~~-~~g~~~~A~~~l~~al~~~p~-~~~-~~~~la~~~~~~g  531 (1050)
                      .|.. ++...+..+|.+++... |  .++.+.-....+-. --.+.+.-+....+.-..... ... ++..+-.-|....
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e  219 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE  219 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence            8877 88899999999988653 2  11111111111111 122333333333222221111 111 1222223345566


Q ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 001578          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (1050)
Q Consensus       532 ~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~a  611 (1050)
                      ++.+|++.+...++.+..+..+.-++...+...-+              +-.+.+-|.....+-..-.++.+|+..|++.
T Consensus       220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~  285 (711)
T COG1747         220 NWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------GHSQLEEYLKISNISQSGRNFFEALNDFEKL  285 (711)
T ss_pred             CHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------cchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence            77777777777777777766665555443332110              0011222333344444456788888888888


Q ss_pred             HhcCCCC
Q 001578          612 LGIDPSN  618 (1050)
Q Consensus       612 l~~~p~~  618 (1050)
                      +..+..+
T Consensus       286 m~f~eGn  292 (711)
T COG1747         286 MHFDEGN  292 (711)
T ss_pred             heeccCc
Confidence            8776655

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.37  E-value=3.1  Score=48.94  Aligned_cols=97  Identities=16%  Similarity=0.045  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001578          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (1050)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (1050)
                      ..+...|.-.++..+|..+++.|...+...|.+      +.....++.||..+.+.+.|.++++.|-+.+|.++-....+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            345567778888889999999999888766654      44566788888889999999999999999998888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhh
Q 001578          456 GQARAALGESVEAIQDLSKALEF  478 (1050)
Q Consensus       456 a~~~~~~g~~~eA~~~l~kal~~  478 (1050)
                      ..+....|.-++|+.+.......
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            88888888888888888776654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.30  E-value=4.8  Score=38.20  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001578          378 SISVDFRLSRGIAQVNEG---KYASAISIFDQILK-EDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (1050)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g---~~~~Ai~~~~~al~-~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (1050)
                      ..+....+.+|.++....   +..+.+.+++.+++ .+|. .-+..+.+|..+++.++|+.++.+.+..++..|++..+.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            455777888888888755   45678889999886 4444 356788899999999999999999999999999987765


Q ss_pred             HHH
Q 001578          453 KRR  455 (1050)
Q Consensus       453 ~~l  455 (1050)
                      ...
T Consensus       109 ~Lk  111 (149)
T KOG3364|consen  109 ELK  111 (149)
T ss_pred             HHH
Confidence            433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=89.27  E-value=18  Score=42.89  Aligned_cols=84  Identities=14%  Similarity=0.090  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 001578          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (1050)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~  595 (1050)
                      +.+.+..++..+.....+.-|.+.|.+.-.        ...+..++...+++++|....++.-+.-   +.+|+-.|+-+
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwL  814 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWL  814 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHh
Confidence            344444445555555555555555544311        1123344556667777666554432222   34566666666


Q ss_pred             HHCCCHHHHHHHHHH
Q 001578          596 HGLGQHKKAIKDLSS  610 (1050)
Q Consensus       596 ~~~g~~~eAi~~l~~  610 (1050)
                      ....++++|.+.|.+
T Consensus       815 AE~DrFeEAqkAfhk  829 (1081)
T KOG1538|consen  815 AENDRFEEAQKAFHK  829 (1081)
T ss_pred             hhhhhHHHHHHHHHH
Confidence            666666666655544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.22  E-value=14  Score=43.35  Aligned_cols=158  Identities=15%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001578          389 IAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (1050)
Q Consensus       389 ~~~~~~g~~~~Ai~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e  467 (1050)
                      ......|+++++....+.. +.-|.- ..-....+..+..+|..+.|+....        +++..+   .+..+.|+.+.
T Consensus       269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRF---ELALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHHhcCCHHH
Confidence            3445678999988877522 222322 3445666777777888887776533        233333   34567788888


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001578          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (1050)
Q Consensus       468 A~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  547 (1050)
                      |.+..++     .+++..|..+|...+.+|+++-|.++|.++-        -+..+..+|...|+.+.-.+....+....
T Consensus       337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            8775432     3467788888888888888888888888752        23556667777777655555544444332


Q ss_pred             cCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001578          548 RNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (1050)
Q Consensus       548 p~~~~~~~~la~~~~~~g~~~~A~~~l~~  576 (1050)
                      ..     ...-.++...|+.++.++.+.+
T Consensus       404 ~~-----n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  404 DI-----NIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             -H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence            21     1112334456777666665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.89  E-value=11  Score=42.53  Aligned_cols=126  Identities=14%  Similarity=0.155  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC----CCHHHHHH
Q 001578          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN--SEKALECLQQVLYIDKRFSKAYHLRGLLLHGL----GQHKKAIK  606 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eAi~  606 (1050)
                      .++-+.+...+++.+|+...+|+....++.+.+.  +..-+.+.+++++.+|.+..+|..+-.+....    ....+-++
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~  170 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE  170 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence            4455566666677777777777777666665543  45666667777777776655555443333322    12455566


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH------ccC------HHHHHHHHHHHHHhcCCCHHHHHH
Q 001578          607 DLSSGLGIDPSNIECLYLRASCYHA------IGE------YREAIKDYDAALDLELDSMEKFVL  658 (1050)
Q Consensus       607 ~l~~al~~~p~~~~~~~~la~~~~~------~g~------~~eA~~~~~~al~l~p~~~~~~~~  658 (1050)
                      +..+++..++.|..+|.++..++..      .|+      ...-++.-..|+-.+|++...|.+
T Consensus       171 ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  171 FTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            6666776666666666666655542      221      223344555566666666655443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.78  E-value=2.2  Score=36.41  Aligned_cols=58  Identities=10%  Similarity=0.023  Sum_probs=46.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccCCcHH----HHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 001578           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQL   98 (1050)
Q Consensus        41 ~~~~~~~~~~~~~~Ai~~y~~ai~~~~~~~~----~~nra~~~~~~~~~~~Ai~~~~~Al~l   98 (1050)
                      .+|-++|.+.+.++|+..++++++..+++..    +..++.+|...|+|.+++....+-+++
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688899999999999999999988855544    445677888999999998877765554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=88.74  E-value=39  Score=36.65  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=15.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHH
Q 001578          482 SADILHERGIVNFKFKDFNAAVEDL  506 (1050)
Q Consensus       482 ~~~~~~~lg~~~~~~g~~~~A~~~l  506 (1050)
                      +++.+..+|..+.+.|++.+|..+|
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            5666777777777777666666555

; PDB: 3LKU_E 2WPV_G.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=88.68  E-value=43  Score=37.00  Aligned_cols=273  Identities=14%  Similarity=0.097  Sum_probs=165.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC--CCH
Q 001578          419 IGRGTARAFQRELEAAISDFTEAIQS--NPSA--------GEAWKRRGQARAALGESVEAIQDLSKALEF---EP--NSA  483 (1050)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~eA~~~l~kal~~---~p--~~~  483 (1050)
                      ...+.......+.++++..+...+..  .|..        ......++..+...|+..+-.......-..   -+  ..+
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa   87 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA   87 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            44555556667778888888888874  1211        235678999999999987766655544322   11  112


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cc--Cc
Q 001578          484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL----DR--NF  550 (1050)
Q Consensus       484 ~~~~~lg~~~~-~~g~~~~A~~~l~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~l~~al~~----~p--~~  550 (1050)
                      .+...+-.... .-+..+.-+..+..+++......      ..-..+..+|...++|.+|+......+.-    +.  .-
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL  167 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL  167 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence            22222222222 23345556666666666543322      23346788899999999999887776543    21  22


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHH
Q 001578          551 LEAWGHLTQFYQDLANSEKALECLQQVLYI-----DKRFS--KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP---SNIE  620 (1050)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~~--~~~~~la~~~~~~g~~~eAi~~l~~al~~~p---~~~~  620 (1050)
                      .+++..-..+|....+..+|...+..|-..     .|...  ..-..-|.++....+|.-|..+|-+|++-..   ++..
T Consensus       168 vev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~  247 (411)
T KOG1463|consen  168 VEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVK  247 (411)
T ss_pred             eeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHH
Confidence            456666677888888999988888776433     12111  1222336666677899999999999987532   1223


Q ss_pred             ---HHHHHHHHHHHccCHHHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCHH
Q 001578          621 ---CLYLRASCYHAIGEYREAIKDY--DAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKE  695 (1050)
Q Consensus       621 ---~~~~la~~~~~~g~~~eA~~~~--~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~~~e  695 (1050)
                         ++..+-.|-..++..++-...+  +.+++....+.++....+.++-++.     +..|+.|+..|..-+.-||--..
T Consensus       248 A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRS-----LkdF~~AL~~yk~eL~~D~ivr~  322 (411)
T KOG1463|consen  248 ALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRS-----LKDFEKALADYKKELAEDPIVRS  322 (411)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCc-----HHHHHHHHHHhHHHHhcChHHHH
Confidence               3334444555566666644443  4555554445544433333433333     36789999999888888877665


Q ss_pred             H
Q 001578          696 Y  696 (1050)
Q Consensus       696 ~  696 (1050)
                      +
T Consensus       323 H  323 (411)
T KOG1463|consen  323 H  323 (411)
T ss_pred             H
Confidence            5

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.34  E-value=3.3  Score=48.67  Aligned_cols=90  Identities=13%  Similarity=0.014  Sum_probs=44.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001578          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (1050)
Q Consensus       523 la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~  596 (1050)
                      -|.-+++..+|..+++.|...+...|.+      ......++.+|..+.+.+.|.+++++|-+.+|.++-....+-.+..
T Consensus       360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~  439 (872)
T KOG4814|consen  360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL  439 (872)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            3444444555555555555555444432      2333444555555555555555555555555555444444444444


Q ss_pred             HCCCHHHHHHHHHHHH
Q 001578          597 GLGQHKKAIKDLSSGL  612 (1050)
Q Consensus       597 ~~g~~~eAi~~l~~al  612 (1050)
                      ..|.-++|+.......
T Consensus       440 ~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  440 AEDKSEEALTCLQKIK  455 (872)
T ss_pred             HhcchHHHHHHHHHHH
Confidence            4555555555544443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=88.02  E-value=12  Score=39.89  Aligned_cols=100  Identities=17%  Similarity=0.055  Sum_probs=68.1

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001578          589 HLRGLLLHGLGQHKKAIKDLSSGLGI------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLA  662 (1050)
Q Consensus       589 ~~la~~~~~~g~~~eAi~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~  662 (1050)
                      ..+..++++.|+|.+|+....-.+.-      .+.-.+++..-..+|....+..++...+..|-.....-.-.-...+..
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l  208 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL  208 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence            45677888999999999887765432      345567888889999999999988888877765432211111223444


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhhc
Q 001578          663 FYQKEIALYTASKINSEFCWFDIDGD  688 (1050)
Q Consensus       663 ~~~~g~~~~~~~~~~~A~~~l~~a~~  688 (1050)
                      -...|+......+|..|..+|-.+.+
T Consensus       209 DL~sGIlhcdd~dyktA~SYF~Ea~E  234 (421)
T COG5159         209 DLLSGILHCDDRDYKTASSYFIEALE  234 (421)
T ss_pred             HHhccceeeccccchhHHHHHHHHHh
Confidence            55567767777788888887765544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.96  E-value=15  Score=43.04  Aligned_cols=157  Identities=15%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001578          424 ARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (1050)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A  502 (1050)
                      .....++++++...... -++-|.- ......++..+...|..+.|+...        .+++..+.++   .+.|+.+.|
T Consensus       270 ~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A  337 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA  337 (443)
T ss_dssp             HHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred             HHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence            34456777777666642 1222222 333455666666677776666542        2444444443   467777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 001578          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (1050)
Q Consensus       503 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p  582 (1050)
                      .+..++     .+++..|..||.....+|+++-|..+|+++-.        +..+..+|.-.|+.+.-.+..+.+.....
T Consensus       338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            665432     33566777777777777777777777766421        23444555566665444444444332211


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 001578          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (1050)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~eAi~~l~~  610 (1050)
                           +...-.+++..|+.++.++.+.+
T Consensus       405 -----~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  405 -----INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             -----HHHHHHHHHHcCCHHHHHHHHHH
Confidence                 11122233444555555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=87.80  E-value=1.2  Score=47.68  Aligned_cols=84  Identities=11%  Similarity=-0.015  Sum_probs=63.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCC
Q 001578          574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL-RASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       574 l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      |.++-...++++..|...+....+.|.|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++.++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334444567777777777777777777888888888888888888887766 4556677788888888888888888888


Q ss_pred             HHHHH
Q 001578          653 MEKFV  657 (1050)
Q Consensus       653 ~~~~~  657 (1050)
                      |..|+
T Consensus       176 p~iw~  180 (435)
T COG5191         176 PRIWI  180 (435)
T ss_pred             chHHH
Confidence            87653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.76  E-value=2.2  Score=45.64  Aligned_cols=68  Identities=18%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHh
Q 001578           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (1050)
Q Consensus        72 ~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~  139 (1050)
                      ..|.=.+|.+.++++.|....++.+.++|..+..+--+|.+|.++|.+.-|+.+++..++++|+.+..
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            34666789999999999999999999999999999999999999999999999999999999998754

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.11  E-value=5.1  Score=51.05  Aligned_cols=132  Identities=20%  Similarity=0.137  Sum_probs=96.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHC----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001578          558 TQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGL----G---QHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (1050)
Q Consensus       558 a~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~----g---~~~eAi~~l~~al~~~p~~~~~~~~la~  627 (1050)
                      -.++...+.|+.|+..|++.-...|..   .++.+..|..+..+    |   .+++|+..|++... .|.-|--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence            345667788899999999888888754   35666777766542    2   46778888876543 5666778889999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 001578          628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL  692 (1050)
Q Consensus       628 ~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~a~~l~p~  692 (1050)
                      +|..+|+++|-+++|.-|++..|++|+.-...-..-|+.-.+.+...+.  |....-.++...|.
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  623 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRRE--ALVFMLLALWIAPE  623 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCcc
Confidence            9999999999999999999999999997766666667776666654443  33333345555554

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=86.77  E-value=91  Score=38.62  Aligned_cols=252  Identities=8%  Similarity=-0.033  Sum_probs=159.6

Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC
Q 001578          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQSNP  446 (1050)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~~~p  446 (1050)
                      +......++.+...+..+-..+...|++++-...-.++-+..|..+..|.....-...   .++-.++...|++++.. -
T Consensus       102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y  180 (881)
T KOG0128|consen  102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-Y  180 (881)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-c
Confidence            3444455666677777888888889999888887778888888888887665544332   35677788888888753 3


Q ss_pred             CcHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          447 SAGEAWKRRGQARAAL-------GESVEAIQDLSKALEFEPN-------SADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (1050)
Q Consensus       447 ~~~~~~~~la~~~~~~-------g~~~eA~~~l~kal~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~  512 (1050)
                      .....|...+......       ++++.-...|.+++..-..       ....+..+-..|...-..++-+.++...+..
T Consensus       181 ~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~  260 (881)
T KOG0128|consen  181 NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ  260 (881)
T ss_pred             ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            4455666666555443       4566777777777764321       1334555555666665667777777777766


Q ss_pred             CCCCHH----HHHHHH--H-HHHHcCCHHHHHHHH-------HHHHHhCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001578          513 DKENKS----AYTYLG--L-ALSSIGEYKKAEEAH-------LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL  578 (1050)
Q Consensus       513 ~p~~~~----~~~~la--~-~~~~~g~~~eA~~~l-------~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al  578 (1050)
                      . -+..    .+....  . ......+++.|...+       .+.++..|.....|..+-......|+.-.-...+++++
T Consensus       261 ~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~  339 (881)
T KOG0128|consen  261 P-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV  339 (881)
T ss_pred             c-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            5 2221    111111  1 112234444444443       33334444445556666677777888888888888988


Q ss_pred             hhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHH
Q 001578          579 YIDKRFSKAYHLRGLLL-HGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (1050)
Q Consensus       579 ~~~p~~~~~~~~la~~~-~~~g~~~eAi~~l~~al~~~p~~~~~~~  623 (1050)
                      ...+.+...|...+..+ ..++-.+.+...+.+++...|-...+|-
T Consensus       340 ~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~  385 (881)
T KOG0128|consen  340 AEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWK  385 (881)
T ss_pred             HhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHH
Confidence            88888888888877665 3455566677778888887776554443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.26  E-value=15  Score=41.55  Aligned_cols=132  Identities=16%  Similarity=0.227  Sum_probs=93.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc----CChHHHH
Q 001578          498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKAL  571 (1050)
Q Consensus       498 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~  571 (1050)
                      -.++-+.+...+++.+|+...+|+....++.+.+.  +..=++..+++++.+|.+..+|...-.+....    ....+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            45666777788888888888888888888887664  46678888888888888877765544333322    2356667


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHH------CCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001578          572 ECLQQVLYIDKRFSKAYHLRGLLLHG------LGQ------HKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (1050)
Q Consensus       572 ~~l~~al~~~p~~~~~~~~la~~~~~------~g~------~~eAi~~l~~al~~~p~~~~~~~~la~~~  629 (1050)
                      ++..+++..++.+..+|..+..++..      .|+      ...-++.-..|+-.+|++..+|+..-..+
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl  239 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL  239 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence            78888888888888888887777652      231      23455666677778999998887744333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.90  E-value=1.6  Score=31.89  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 001578          620 ECLYLRASCYHAIGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       620 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~  649 (1050)
                      .++.++|.+|...|++++|..++++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            467788888888888888888888888764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=85.83  E-value=3  Score=37.38  Aligned_cols=59  Identities=15%  Similarity=0.076  Sum_probs=44.4

Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 001578           77 FCYSQLELHKHVIRDCDKALQLDPT---------LLQAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (1050)
Q Consensus        77 ~~~~~~~~~~~Ai~~~~~Al~l~P~---------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~~~~~  135 (1050)
                      .-.++.|+|..|+..+.+.++....         ..-+.+.+|.+....|++++|+..+++|+.++.+
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3456777888887777776654421         2347888999999999999999999999777643

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=85.62  E-value=58  Score=36.90  Aligned_cols=125  Identities=18%  Similarity=0.042  Sum_probs=80.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhCC-C--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHH
Q 001578          426 AFQRELEAAISDFTEAIQSNP-S--------AGEAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERG  490 (1050)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~p-~--------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~lg  490 (1050)
                      +.+.++.+|...-+..+..-. .        .+..|+.+..+|...|+...-...+...+....      ..+.+...+-
T Consensus       137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL  216 (493)
T KOG2581|consen  137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL  216 (493)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence            345788888877766553211 1        234677777788888876655555544443211      1133455566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 001578          491 IVNFKFKDFNAAVEDLSACVKLD--K--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (1050)
Q Consensus       491 ~~~~~~g~~~~A~~~l~~al~~~--p--~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  550 (1050)
                      ..|...+.|+.|.....+..--.  .  .-+..++++|.+..-+++|..|.+++.+|+...|++
T Consensus       217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            77777888888887776654211  1  123456778888888888888888888888888874

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.24  E-value=1.6  Score=31.84  Aligned_cols=29  Identities=28%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001578          104 QAYILKGCAFSALGRKEEALSVWEKGYEH  132 (1050)
Q Consensus       104 ~a~~~~g~~~~~lg~~~~A~~~~~~al~~  132 (1050)
                      +.|.++|.+-+..++|++|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46889999999999999999999999544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=85.05  E-value=1.6  Score=46.87  Aligned_cols=78  Identities=15%  Similarity=0.212  Sum_probs=41.4

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Q 001578          478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY-LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (1050)
Q Consensus       478 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~-la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~  555 (1050)
                      ..|+++..|...+....+.+-|.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...+.+++..+|+.+..|.
T Consensus       102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            344555555555555555555555555555555555555555544 333344555555555555555555555555443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=84.96  E-value=7.5  Score=43.69  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=34.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 001578          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       590 ~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  645 (1050)
                      .+..||..+++.+-|+....+.+.++|....-+...|.|+..+.+|.+|...+--+
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666665544433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.00  E-value=2.3  Score=31.09  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~  545 (1050)
                      ++.++|.+|...|++++|+.++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344444455555555555555444444

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=83.86  E-value=9.3  Score=41.03  Aligned_cols=69  Identities=22%  Similarity=0.168  Sum_probs=39.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 001578          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL  624 (1050)
Q Consensus       556 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~~~~~~~~  624 (1050)
                      ++=..+...++++.|..+.++.+.++|.++.-....|.+|.++|.+.-|++.++..++.-|+.+.+-..
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i  254 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI  254 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence            333445555666666666666666666666555566666666666666666666655555555544433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.85  E-value=18  Score=37.13  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 001578          482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE----NKSAYTYLGLALSSIGEYKKA  536 (1050)
Q Consensus       482 ~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~eA  536 (1050)
                      +++..+.+|..|. ..+.++|+..+.+++++.+.    +++.+..|+.++..+|+++.|
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            3444444444443 33445555555555544322    234444444444444444443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=83.45  E-value=75  Score=34.84  Aligned_cols=154  Identities=10%  Similarity=-0.077  Sum_probs=91.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001578          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (1050)
Q Consensus       445 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la  524 (1050)
                      +.+....-+.+.+...+..+..+-+.....+++++|..+.++..++.--  ..-..+|...++++++...    ..++..
T Consensus       180 d~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~s  253 (556)
T KOG3807|consen  180 DTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQS  253 (556)
T ss_pred             cccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhH
Confidence            3344444455566666777778888888888999888888887776532  2345677788888776532    222233


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCC
Q 001578          525 LALSSIGEYKKAEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQ  600 (1050)
Q Consensus       525 ~~~~~~g~~~eA~~~l~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~  600 (1050)
                      ......|...+|..      + ...+.  .+-..++.+..++|+..+|++.++...+..|-.  ..++.++-..+....-
T Consensus       254 qq~qh~~~~~da~~------r-RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA  326 (556)
T KOG3807|consen  254 QQCQHQSPQHEAQL------R-RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA  326 (556)
T ss_pred             HHHhhhccchhhhh------h-cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            33333333332211      1 11222  233467888888888888888888877766622  2344555555555555


Q ss_pred             HHHHHHHHHHH
Q 001578          601 HKKAIKDLSSG  611 (1050)
Q Consensus       601 ~~eAi~~l~~a  611 (1050)
                      |.+....+-+.
T Consensus       327 YADvqavLakY  337 (556)
T KOG3807|consen  327 YADVQAVLAKY  337 (556)
T ss_pred             HHHHHHHHHhh
Confidence            55544444433

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=83.21  E-value=64  Score=35.67  Aligned_cols=87  Identities=15%  Similarity=0.014  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 001578          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSNIECLYLRASCYHAIGEYREAIKDYDA  644 (1050)
Q Consensus       567 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  644 (1050)
                      +..-..+|.-.....|+ +.+-.|.+.......-...++...+.....  -.+....+-..|..+.++|+.++|...|++
T Consensus       312 W~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydr  390 (415)
T COG4941         312 WPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDR  390 (415)
T ss_pred             hHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHH
Confidence            33333334333333332 333334444444433444444444443332  112223444455566666666666666666


Q ss_pred             HHHhcCCCHH
Q 001578          645 ALDLELDSME  654 (1050)
Q Consensus       645 al~l~p~~~~  654 (1050)
                      ++.+.++..+
T Consensus       391 Ai~La~~~ae  400 (415)
T COG4941         391 AIALARNAAE  400 (415)
T ss_pred             HHHhcCChHH
Confidence            6666655554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.11  E-value=12  Score=40.62  Aligned_cols=92  Identities=18%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             HHHHHHHHh----cCC--HHHHHHHHHHHHhccCCcHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 001578           40 RIELAKLCS----LRN--WSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (1050)
Q Consensus        40 r~~~~~~~~----~~~--~~~Ai~~y~~ai~~~~~~~~~~nra~~~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~~g~~~  113 (1050)
                      +.++..+|.    .++  |..=+....++++... ..++..++..+...|+++.++..+++.+..+|-+-++|.++=.+|
T Consensus       119 ~~~~~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~-~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y  197 (280)
T COG3629         119 FEQAGELLSEGPVLGDDRFDEWVLEQRRALEELF-IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAY  197 (280)
T ss_pred             HHHHHHHhhcCCcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            344455555    333  4444444444443321 244677899999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhh
Q 001578          114 SALGRKEEALSVWEKGYEH  132 (1050)
Q Consensus       114 ~~lg~~~~A~~~~~~al~~  132 (1050)
                      +..|+...|+..|++...+
T Consensus       198 ~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         198 LVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHcCCchHHHHHHHHHHHH
Confidence            9999999999999999553

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=81.89  E-value=61  Score=32.65  Aligned_cols=49  Identities=16%  Similarity=0.030  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHh
Q 001578          598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI----GEYREAIKDYDAALDL  648 (1050)
Q Consensus       598 ~g~~~eAi~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l  648 (1050)
                      ..+.+.|.++-.+|.+++  ++.+.-++...|..-    .+-++|..+-.+|.++
T Consensus       181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            345566666666665553  344444444444321    1345555555555554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.91  E-value=13  Score=38.09  Aligned_cols=72  Identities=21%  Similarity=0.168  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHH
Q 001578          567 SEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS----NIECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       567 ~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~eAi~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~  639 (1050)
                      -++|...|-++-.... +.++..+.+|..|. ..+.++|+..+.+++++.+.    +++++..|+.++..+|+++.|.
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3556666555432211 45677777776665 45677778877777776433    3677788888888888877775

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=80.60  E-value=67  Score=32.35  Aligned_cols=187  Identities=16%  Similarity=0.106  Sum_probs=119.5

Q ss_pred             CCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHH
Q 001578          378 SISVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGEA  451 (1050)
Q Consensus       378 ~~~~~~~~~~a~~~~~-~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~  451 (1050)
                      ...++....+|..+.. +.+|++|..+|..--+.+ .++...+.+|..++.     .+++..|++.+..+-.  .+.+.+
T Consensus        31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a  107 (248)
T KOG4014|consen   31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA  107 (248)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence            3456777777776643 568888888887765544 345556666655443     4578899999988765  566777


Q ss_pred             HHHHHHHHHHc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001578          452 WKRRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (1050)
Q Consensus       452 ~~~la~~~~~~-----g--~~~eA~~~l~kal~~~p~~~~~~~~lg~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la  524 (1050)
                      ...+|.++..-     +  +..+|.+++.++-.+.  +..+.++|...|+.-.+  +       +....|..... ...+
T Consensus       108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p-~~~~  175 (248)
T KOG4014|consen  108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKP-LDRA  175 (248)
T ss_pred             HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCC-cchh
Confidence            77888777643     2  3788999999998765  56666666666654321  1       11113311000 1123


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhC
Q 001578          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYID  581 (1050)
Q Consensus       525 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~  581 (1050)
                      ..+....+.+.|.++-.+|-+++  ++.+-.++.+.|..-    .+-++|..+-.+|.++.
T Consensus       176 ~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  176 ELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             hhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence            34445577888888888887764  456666777776532    35678888888777653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=80.35  E-value=7.4  Score=34.86  Aligned_cols=54  Identities=19%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001578          391 QVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (1050)
Q Consensus       391 ~~~~g~~~~Ai~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~  444 (1050)
                      ....|+|.+|++.+.+..+....         ...++..+|.++...|++++|+..+++++++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45567777777766666653211         1234455555566666666666666666554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.18  E-value=14  Score=31.71  Aligned_cols=62  Identities=6%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHH
Q 001578          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAIQ  443 (1050)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~---~la~~~~~~g~~~~A~~~~~~al~  443 (1050)
                      .-.+..|.-++...+.++|+..+.++++..++.+.-+.   .+..+|...|+|.+++.+..+-++
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777888888888888888887766655443   444566677777777766554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1050
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-13
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-08
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-09
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		3e-07
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-04
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-07
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		9e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		3e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		1e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		5e-04
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		6e-04
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		8e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E     
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           ++LD  +  A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 570 ALECLQQVLYIDKR 583
           A+E  Q+ L +D R
Sbjct: 122 AIEYYQKALELDPR 135

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%)
Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L +D 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           R ++A+              +AI+     L +DP + E  Y   + Y+  G+Y EAI+ Y
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 643 DAALDLE 649
             AL+L+
Sbjct: 127 QKALELD 133

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+  LG A    G+Y +A E + KA++LD N  EA
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           NSA+  +  G   +K  D++ A+E     ++LD  N  A+  LG A    G+Y +A E +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
            KA++LD N  EAW +L   Y    + ++A+E  Q+ L +D   ++A
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A+              +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
              L +DP+N E  Y   + Y+  G+Y EAI+ Y  AL+L+ ++ E
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAWK  G A    G+  +AI+   KALE +PN+A   +  G   +K  D+  A+E  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+   G A    G+Y+KA E + KA++LD N  +A
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
           N  EAW +L   Y    + +KA+E  Q+ L +D   + A+             +KAI+  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
              L +DP+N +  Y R + Y+  G+Y++AI+DY  AL+L+
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           G  +  + + + AI  + + ++++P+  E   + G+    +G   +AI+ L K +  +  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA+  +  G  NF   +  AA++ L   + L+     AY  LGL   S+GE+ KA EA+ 
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 542 KAIQLDRNFLEAWGHLTQFYQ 562
           K I +   F+ A+  +   Y+
Sbjct: 132 KTISIKPGFIRAYQSIGLAYE 152

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  +   G+   AI+   K L+ +PN+ + L + G         N A+E L   V LD  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           +  AY  LG A   I E + A +A  +AI L+  + +A+  L   Y  +   +KA+E  +
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 576 QVLYIDKRFSKAY 588
           + + I   F +AY
Sbjct: 132 KTISIKPGFIRAY 144

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 61/135 (45%)
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E  + Y  +G    + G++  A  A+ K ++ D N +E    L + Y D+     A+E L
Sbjct: 3   ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL 62
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           ++ + +D   ++AY             + AI  L   + ++    +  Y     Y ++GE
Sbjct: 63  KKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122
Query: 635 YREAIKDYDAALDLE 649
           + +AI+ Y+  + ++
Sbjct: 123 HDKAIEAYEKTISIK 137

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 100/254 (39%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q NP        
Sbjct: 81  GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G    ALG   EA     KA+E +PN A      G V     +   A+      V LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +    + A++  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 575 QQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           ++ + +   F  AY              +A    ++ L + P++ + L   A+     G 
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Query: 635 YREAIKDYDAALDL 648
             EA++ Y  AL++
Sbjct: 321 IEEAVRLYRKALEV 334

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE  PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++L   N  A+  LG A    G+Y +A E + KA++L  N  EA
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 31/282 (10%)
Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447
           GK  +A+    ++++    +  A + RG     Q +L+ A  DF + ++SNPS       
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
Query: 448 ------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
                 + E  + R QA  A G  +   AI  L K LE     A++   R     K  + 
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP 193
Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++    + H  Q
Sbjct: 194 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ 253
Query: 560 FYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK-------------- 603
             +     E A E ++   Y D   ++                 K+              
Sbjct: 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313
Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           AI+  S  L ++P N+  L  RA  Y     Y EAI+DY+ A
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    ++++    +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 66  RATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 447 S-------------AGEAWKRRGQARAALG--ESVEAIQDLSKALEFEPNSADILHERGI 491
           S             + E  + R QA  A G  +   AI  L K LE     A++   R  
Sbjct: 126 SENEEKEAQSQLIKSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
             + H  Q  +     E A E ++   Y D   ++                 K+      
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCF 305
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
                   AI+  S  L  +P N+  L  RA  Y     Y EAI+DY+ A
Sbjct: 306 SKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETA 355

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A S+L +  EA++ ++K  E
Sbjct: 49  FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP      K +G      G+  +A++  ++A++  P  A +   R     K  +F  A++
Sbjct: 12  NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 112/290 (38%), Gaps = 31/290 (10%)
Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    +++     +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 43  RATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102
Query: 447 S-------------AGEAWKRRGQARAAL--GESVEAIQDLSKALEFEPNSADILHERGI 491
           S             A E  + R QA  A    +   AI  L K LE     A++   R  
Sbjct: 103 SEQEEKEAESQLVKADEXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222
Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYID--KRFSKAYXXXXXXXXXXXXXKK------ 603
             + H  Q  +     E A E ++   Y D   ++                 K+      
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCF 282
Query: 604 --------AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
                   AI+  S  L  +P N+  L  RA  Y     Y EAI+DY+AA
Sbjct: 283 SKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAA 332

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIG 531
              ++LD  N  A   LG A    G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   +  K +G      G+   A++  ++A++ +P +A +   R     K  +F  A++
Sbjct: 9   NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++LD +    Y      L ++ E+ KA+ A+  A+Q+D +  EA
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E  
Sbjct: 1   GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 507 SACVKLD 513
              ++LD
Sbjct: 61  QKALELD 67

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 98  LDPTLLQAYILKGCAFSALGRKEEALSV 125
            DP  ++AYI K  A  A+     AL  
Sbjct: 202 KDPNFVRAYIRKATAQIAVKEYASALET 229

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 98  LDPTLLQAYILKGCAFSALGRKEEAL 123
            DP  ++AYI K  A  A+     AL
Sbjct: 67  KDPNFVRAYIRKATAQIAVKEYASAL 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1050
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-60
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-60
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-60
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-59
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-56
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-51
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-48
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-33
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-60
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-58
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-58
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-52
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-56
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-49
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-42
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-38
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-37
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-36
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-56
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-53
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-40
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-34
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-54
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-40
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-32
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-55
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-46
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-46
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-50
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-50
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-40
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-40
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-49
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-45
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-42
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-28
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-49
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-45
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-45
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-30
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-26
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-45
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-46
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-46
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-45
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-44
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-44
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-44
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-41
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-39
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-38
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-33
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-33
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-45
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-34
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-28
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-44
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-41
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-33
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-43
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-30
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-28
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-23
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-20
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-43
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-31
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-26
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-34
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-33
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-33
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-26
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-22
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-33
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-25
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-23
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-30
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-27
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-25
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-25
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-23
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-25
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-24
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-24
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-25
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-24
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-22
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-20
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-20
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-10
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-18
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-16
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-18
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-15
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-18
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-17
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-17
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-14
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	9e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-10
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-08
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	6e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	5e-16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	7e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-11
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-16
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	7e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	9e-14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-15
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	9e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	8e-13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	7e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	9e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	5e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	7e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	9e-08
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-10
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	2e-11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-10
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-10
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	8e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-10
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-10
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	5e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	8e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	3e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	5e-07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	7e-07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	8e-06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	1e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	9e-05
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	4e-04
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	4e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	7e-04

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  213 bits (545), Expect = 3e-60
 Identities = 38/301 (12%), Positives = 81/301 (26%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +       + + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  + +          Q L   Q+ + +   A  +  +
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 680 F 680
            
Sbjct: 445 Q 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  213 bits (543), Expect = 5e-60
 Identities = 38/300 (12%), Positives = 77/300 (25%), Gaps = 6/300 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L    +            L     +++    A    + 
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  212 bits (542), Expect = 7e-60
 Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++A +    +A    
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A    +   Q L 
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  + +          Q L   Q+ + +   A  +  E
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410

Query: 680 F 680
            
Sbjct: 411 Q 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  209 bits (535), Expect = 6e-59
 Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L    +          Q L   Q+ + +   A  +  E
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376

Query: 680 F 680
            
Sbjct: 377 Q 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  201 bits (513), Expect = 6e-56
 Identities = 42/301 (13%), Positives = 83/301 (27%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            RG     E  +A   ++    L   P    A+      +     ++  +    +A    
Sbjct: 43  KRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +          +   A +  
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 223 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 282

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
           +    A+   +  +     A  L    +          Q L   Q+ + +   A  +  +
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 342

Query: 680 F 680
            
Sbjct: 343 Q 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  186 bits (475), Expect = 6e-51
 Identities = 40/300 (13%), Positives = 77/300 (25%), Gaps = 6/300 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +       +     +   P
Sbjct: 10  WSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A       + AL      +  L +A    P     +          +     +  L
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  E   A         ++   +       +A  L    + A        Q L  
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +    
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 627 SCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
               A+   +  +     A  L    +          Q L   Q+ + +   A  +  + 
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  178 bits (454), Expect = 4e-48
 Identities = 34/259 (13%), Positives = 64/259 (24%), Gaps = 7/259 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L      +      L    ++       
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND------H 480

Query: 626 ASCYHAIGEYREAIKDYDA 644
                 +G  R A+     
Sbjct: 481 LVALACLGG-RPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  135 bits (341), Expect = 2e-33
 Identities = 33/239 (13%), Positives = 65/239 (27%), Gaps = 10/239 (4%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK--FKDFNAAVEDLS 507
               +   ARA       A +     L+ +      + +RG V        +  A+    
Sbjct: 5   HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG-- 62

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
           A + L  E   A         ++   ++      +A  L    + A        Q L   
Sbjct: 63  APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETV 122

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           ++ L  L Q   +      A          L   +  +  L    G+ P  +  +     
Sbjct: 123 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGG 182

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
              A+   +  +     A  L    +          Q L   Q+ + +   A  +  + 
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 83.6 bits (207), Expect = 8e-17
 Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 16/179 (8%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E+   +     A +       A E     +QLD   L          +    + +A+   
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKI-----AKRGGVTAVEAVHAW 56

Query: 575 QQVLY-----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           +  L      +      A          L   ++ +  L    G+ P  +  +       
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEFCW 682
            A+   +  +     A  L  + +          Q L   Q  + +   A  +  E   
Sbjct: 117 QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +A   L      +       +       LE  + ++    +A  L P  + A       
Sbjct: 368 CQAHG-LTPEQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 113 FSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
             AL   +  L V  +          A+  +   +  LE +   L+    
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQDR 157
           A         AL   +  L V  +          A+  +   KQ LE ++ LL    Q  
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

Query: 158 SVTCEY 163
            +T E 
Sbjct: 406 GLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       + +     LE  + ++    +A  L P  + A    G   
Sbjct: 267 QAHG-LTPQQVVAI-----ASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+      KQ LE ++ LL  
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 7e-07
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L    +A   L      +       +       LE  + ++    +A  L P  + A   
Sbjct: 92  LPVLCQAHG-LTPQQVVAI-----ASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 109 KGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
                 AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 199

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L      + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       +       LE  + ++    +A  L P  + A        
Sbjct: 233 QAHG-LTPQQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+  +   KQ LE ++ LL  
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           ++  I +       LE  + ++    +A  L P  + A         AL   +  L V  
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 128 K------GYEHALHQSADLKQFLE-LEELLTA 152
           +          A+      KQ LE ++ LL  
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  210 bits (537), Expect = 3e-60
 Identities = 62/302 (20%), Positives = 117/302 (38%), Gaps = 6/302 (1%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   EA+   G      G+  EAI+    AL  +P+  D             D   AV+
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
              + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A+   ++ + +D  F  AY   G +L       +A+      L + P++      
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALY-TASKINS 678
            A  Y+  G    AI  Y  A++L+    + +      L+      +    Y TA ++  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 679 EF 680
             
Sbjct: 303 TH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  204 bits (522), Expect = 3e-58
 Identities = 71/301 (23%), Positives = 117/301 (38%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           + G      G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q N
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P         G    ALG   EA     KA+E +PN A      G V     +   A+  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
               V LD     AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +  
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             + A++  ++ + +   F  AY      L   G   +A    ++ L + P++ + L   
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
           A+     G   EA++ Y  AL++  +          VLQ     Q+ +  Y  A +I+  
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 680 F 680
           F
Sbjct: 372 F 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  203 bits (520), Expect = 5e-58
 Identities = 56/274 (20%), Positives = 106/274 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++   A V  G    A+  +   L+ +P         G        LE A + + +
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  + + F+
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      + L   +   +  L       G    A + + +AI+L  +F +A+ +L   
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  +  +A +C    L +    + + +    +    G  ++A++     L + P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
                AS     G+ +EA+  Y  A+ +     +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  188 bits (480), Expect = 1e-52
 Identities = 47/254 (18%), Positives = 99/254 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
              R   G      G+   A + + + ++  P +  A    G     Q E+  AI  F +
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A+  +P+  +A+   G           A+    +AL   PN A +      V ++    +
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A++     ++L      AY  L  AL   G   +AE+ +  A++L     ++  +L   
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  N E+A+   ++ L +   F+ A+     +L   G+ ++A+      + I P+  +
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 621 CLYLRASCYHAIGE 634
                 +    + +
Sbjct: 375 AYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  A++  +  L          +       L   +       KA++  P    A+  
Sbjct: 121 VQAYVSALQY-NPDLYCVR-----SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 109 KGCAFSALGRKEEALSVWEK 128
            GC F+A G    A+  +EK
Sbjct: 175 LGCVFNAQGEIWLAIHHFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + ++  A+R+        Y      N A         +  ++    ALQ +P L      
Sbjct: 87  IEHYRHALRL-KPDFIDGY-----INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G    ALGR EEA + + K
Sbjct: 141 LGNLLKALGRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           S    + AI+  + LLA++Y      N    Y +    +  I     AL+L P  +  YI
Sbjct: 52  SAHFSTLAIKQ-NPLLAEAY-----SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105

Query: 108 LKGCAFSALGRKEEALSVWEK 128
               A  A G  E A+  +  
Sbjct: 106 NLAAALVAAGDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 7e-07
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
            I+LA    +  + +AI +       +Y     CN A    +           + AL+L 
Sbjct: 252 LIDLA----IDTYRRAIEL-QPHFPDAY-----CNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEK 128
           PT   +           G  EEA+ ++ K
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+R+     A S       N A    +    +  +R   KAL++ P    A+       
Sbjct: 296 TALRL-CPTHADSL-----NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 114 SALGRKEEALSVWEKGYEHAL 134
              G+ +EAL      Y+ A+
Sbjct: 350 QQQGKLQEAL----MHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ +     A  +      N A  Y +  L    I    +A++L P    AY     A 
Sbjct: 228 RALSL-SPNHAVVH-----GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

Query: 114 SALGRKEEALSVWEKGYEHAL 134
              G   EA       Y  AL
Sbjct: 282 KEKGSVAEAEDC----YNTAL 298

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 41  IELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +P L +AY   G  +   G+ +EA+  +  
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 3e-06
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D     +Y      N      +  +    +    +AL L P     +    C +
Sbjct: 194 KAVTL-DPNFLDAY-----INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 114 SALGRKEEALSVWEK 128
              G  + A+  + +
Sbjct: 248 YEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KAI       A ++      N    ++        I   +KA+ LDP  L AYI  G   
Sbjct: 160 KAIET-QPNFAVAW-----SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 114 SALGRKEEALSVWEK 128
                 + A++ + +
Sbjct: 214 KEARIFDRAVAAYLR 228

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  203 bits (518), Expect = 3e-56
 Identities = 57/346 (16%), Positives = 107/346 (30%), Gaps = 22/346 (6%)

Query: 345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIF 404
            S L           + A       +       +    + ++  +   +   Y S +S  
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                       AL   G     +  L  A     E+I  +P+   ++       A    
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKEN 291

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
           S E  +   KA++  P      + RG + F  +D+  A ED      L+ EN   Y  L 
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
             L   G++ ++E    +         E      +   D  + + A++       +++  
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

Query: 585 SKAYHLRGLLLH----------------GLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            K +   G L+                    +   AIK L+    +DP + +     A  
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKF---VLQCLAFYQKEIALY 671
              + +  EAI+ ++ +  L     EK         A  QK +   
Sbjct: 472 KLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRAD 517

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  183 bits (466), Expect = 2e-49
 Identities = 38/277 (13%), Positives = 83/277 (29%), Gaps = 19/277 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI    +     A  +  + +   P    + I      A +   +     F +A+  NP
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +  RGQ    L +   A +D  KA    P +     +   + +K   F  +    
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--------- 557
           +             T+    L+  G++  A + +  A +L+    +    +         
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

Query: 558 -------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
                       D      A++ L +   +D R  +A      L   + +  +AI+    
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              +  +  E L      +    + ++ ++       
Sbjct: 488 SAILARTMDEKLQATT--FAEAAKIQKRLRADPIISA 522

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  165 bits (419), Expect = 2e-43
 Identities = 55/319 (17%), Positives = 107/319 (33%), Gaps = 24/319 (7%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
           +    AS   IFD  L+   +   +              + A +  ++A+Q   SA +  
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSS------------NYDTAYALLSDALQRLYSATDEG 210

Query: 453 --KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510
                     +       +   +       N+A  L   GI +F   +   A   L   +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
            L     ++Y +L L L+     ++  +   KA+ L+  +   + H  Q Y  L + + A
Sbjct: 271 NLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630
            E  Q+   ++      Y     LL+  G+  ++    +      P+  E     A    
Sbjct: 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389

Query: 631 AIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDG--- 687
             G++  AIK YD A  LE    +  V       +  I    +S+  ++      +    
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

Query: 688 ------DIDPLFKEYWCKR 700
                 ++DP  ++     
Sbjct: 450 LLTKACELDPRSEQAKIGL 468

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  165 bits (419), Expect = 3e-43
 Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 21/314 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        +  AI  +   ++ DP  P              +LE  I   T+A++  P
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKAL---EFEPNSADILHERGIVNFKFKDFN-AA 502
              +A  RR  A  +LG   +A+ DLS      +F+  S + + ER +     K  N   
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAW 554
            +D     ++   N S  ++ G+  S +          Y  A      A+Q   +  +  
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210

Query: 555 GHL--TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
             +      +        L        + +  + A    G+          A   L   +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKE 667
            + P         A         +E  K +  A+DL  +    +     +   L  Y+  
Sbjct: 271 NLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329

Query: 668 IALYT-ASKINSEF 680
              +  A  +N E 
Sbjct: 330 KEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  161 bits (409), Expect = 5e-42
 Identities = 37/263 (14%), Positives = 85/263 (32%), Gaps = 25/263 (9%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
             +   ++         F + +  +P YP     RG      ++ + A  DF +A   NP
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                + +        G+  E+    ++     P   ++      +     DF+ A++  
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401

Query: 507 SACVKLDKENKSAYTYLGLALS----------------SIGEYKKAEEAHLKAIQLDRNF 550
               +L++  +  +  +G  +                    ++  A +   KA +LD   
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
            +A   L Q    +   ++A+E  +    + +   +             + +K ++    
Sbjct: 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLR---- 515

Query: 611 GLGIDPSNIECLYLRASCYHAIG 633
               DP     + L  + Y A G
Sbjct: 516 ---ADPIISAKMELTLARYRAKG 535

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  150 bits (380), Expect = 3e-38
 Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 23/311 (7%)

Query: 395 GKYASAISIFDQILK----EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           G + +      Q+      +   Y   L  RG      +    AI  +  AI+ +P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-C 509
            +        + G+  + I+  +KALE +P+ +  L  R   N    +F  A+ DLS   
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 510 VKLDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-- 564
           +  D +  S    L   L+        +   +   +  Q+  +          F   L  
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180

Query: 565 ------ANSEKALECLQQVLYIDKRFSKAYHL--RGLLLHGLGQHKKAIKDLSSGLGIDP 616
                 +N + A   L   L      +   +L    LL      +   +   +    +  
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240

Query: 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF----VLQCLAFYQKEIALYT 672
           +    L      +       +A      +++L             L      Q+    + 
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQ 300

Query: 673 -ASKINSEFCW 682
            A  +N E+  
Sbjct: 301 KAVDLNPEYPP 311

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  148 bits (375), Expect = 1e-37
 Identities = 50/320 (15%), Positives = 100/320 (31%), Gaps = 21/320 (6%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTAR-AFQRELEAAIS 436
               L R  A  + G +  A+     +           E ++ R   + A +   E    
Sbjct: 93  SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHE 488
           D     Q  PS        G   + L             A   LS AL+   ++ D  + 
Sbjct: 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 489 RGIVNFK--FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                       +++ +   +    L +    A  Y G+          A+    ++I L
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                 ++  L     D  NS++  +  Q+ + ++  +   Y+ RG +   L  +K A +
Sbjct: 273 HPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCL 661
           D      ++P N+      A   +  G++ E+   ++          E       +L   
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391

Query: 662 AFYQKEIALYT-ASKINSEF 680
             +   I  Y  A ++    
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  144 bits (365), Expect = 2e-36
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        Y +A   F +    +P      I        Q +   + + F E     P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF---------- 496
           +  E      +     G+   AI+    A   E     I    G +  K           
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 497 ------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
                 + FNAA++ L+   +LD  ++ A   L      + +  +A E    +  L R  
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
            E     T  + + A  +K L     +    +     Y  +G+L
Sbjct: 496 DEKLQATT--FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.7 bits (158), Expect = 9e-11
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 8/150 (5%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  AI + D      Y      N + CY      + VI    KAL++ P   +A + 
Sbjct: 45  IKYYQYAIEL-DPNEPVFY-----SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98

Query: 109 KGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVS 166
           +  A  +LG   +A+        +     A ++  LE      A K   +     E   S
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 167 NSMSSLTVSESGLNANDKMSETSENHNKSD 196
             + S T   S     D   E S  +  S+
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + +     +Y      +R   Y  L+ +K+   D  KA  L+P  +  YI   C  
Sbjct: 301 KAVDL-NPEYPPTY-----YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354

Query: 114 SALGRKEEALSVWEK 128
              G+  E+ + + +
Sbjct: 355 YKQGKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 14/83 (16%), Positives = 26/83 (31%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                N   A  +L   +            A   +  E  +   +   KA+ L+P     
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +  L   + A   ++K
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             ++ KA  + +      Y        A    +           ++     PTL +    
Sbjct: 330 KEDFQKAQSL-NPENVYPY-----IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +  G  + A+  ++ 
Sbjct: 384 FAEILTDRGDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 54  KAIRI----------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
            A R+          +  L+ ++  +    ++       E     I+   KA +LDP   
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           QA I        + + +EA+ ++E 
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                +              +++ L PT   +YI      +     +E    ++K
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 35  SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC---NRAFCYSQLELHKHVIRD 91
               + +E++ + +  N+  A  +L   L + Y   D              +++  ++  
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                 L      A    G          +A  + ++
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 8/79 (10%)

Query: 49  LRNWSKAIRI---LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
             + ++   +        A         NR   +   +     I+    A++LDP     
Sbjct: 7   EPDIAQLKGLSPSQRQAYAVQL-----KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 106 YILKGCAFSALGRKEEALS 124
           Y      + + G  E+ + 
Sbjct: 62  YSNISACYISTGDLEKVIE 80

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  202 bits (515), Expect = 5e-56
 Identities = 51/289 (17%), Positives = 100/289 (34%), Gaps = 13/289 (4%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             +   +   ++  K       +L   G  +  + +   A  D  +AI+  P    ++  
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIY 275

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
                A   +S E      KAL+ + N++ + + RG +NF  ++++ A +D     +LD 
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           EN   Y  L        ++   E    +A +      E      +   D  + +KAL+  
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395

Query: 575 QQVLYIDKRFSKAYHLRGLLLH---------GLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
              + ++ +    Y     L+           +    +A   L     +DP + +     
Sbjct: 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEK---FVLQCLAFYQKEIALY 671
           A       +  EAI  ++ + DL     EK         A  Q+ I   
Sbjct: 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  194 bits (496), Expect = 2e-53
 Identities = 47/340 (13%), Positives = 116/340 (34%), Gaps = 16/340 (4%)

Query: 317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF-KWDMLKETSNEAKRNKKFCVTRISK 375
            +        +Y +S+ +D +  +   +  K S   +D   E+  +A R  +  + + ++
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 376 SKSISVDFRL---SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
            + +     +     GI +  +     A     + ++  P    + I      A + +  
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDST 287

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
              + F +A++ + +    +  RGQ    L    +A +D  KA E +P +     +   +
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
            ++   F+      S   +   E      +    L+   ++ KA + +  AI+L+     
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407

Query: 553 AWGHL---------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            +  +               + N  +A   L++   +D R  +A      +        +
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
           AI        +  +  E L      +    + ++ I+   
Sbjct: 468 AITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSDP 505

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  170 bits (433), Expect = 2e-45
 Identities = 48/350 (13%), Positives = 99/350 (28%), Gaps = 42/350 (12%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-------------EL 431
           L R + +    K        D                   +                 + 
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARA------------ALGESVEAIQDLSKALEFE 479
           E   +++ E+ +++           +               A     E +   ++  + +
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
              A  L   GI  F   D   A ED+   ++L     ++Y Y+ L ++   +  +    
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNY 292

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA++LD N    + H  Q    L N ++A +   +   +D      Y     L +   
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           +        S      P   E     A       ++ +A+K YD A++LE          
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG----- 407

Query: 660 CLAFYQKEIALYTASKINSEFCWFDIDG---------DIDPLFKEYWCKR 700
              +      +  A+ +       +             +DP  ++     
Sbjct: 408 --IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  155 bits (393), Expect = 3e-40
 Identities = 46/328 (14%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  AI  ++  L+     P              +L+  +   T+A++  P
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKA---LEFEPNSADILHERGIVNFKFKDFNAAV 503
              +   RR  A   LG+  +A+ DLS      +F   S + + ER +            
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 504 EDLSACVKLDKENKSAYTYLGL-------------ALSSIGEYKKAEEAHLKAIQLDRNF 550
            D+        E  +                    +   I + +     + ++ + D+  
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190

Query: 551 LEAWGHLTQ------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
           +    +L +            F +     E+ L+   +   + ++ + +    G+     
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-- 656
                A +D+   + + P  +      A       +  E    +D AL L+ ++   +  
Sbjct: 251 NDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH 309

Query: 657 ---VLQCLAFYQKEIALYT-ASKINSEF 680
              +   L  Y +    +  A +++ E 
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  137 bits (347), Expect = 3e-34
 Identities = 39/304 (12%), Positives = 84/304 (27%), Gaps = 34/304 (11%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           E   Y  AL  +G      ++ + AI  +  A++        +        ++G+  + +
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVV 59

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CVKLDKENKSAYTYL--GLA 526
           +  +KALE +P+ + +L  R   N     F  A+ DLS   +  D  + S    L   L 
Sbjct: 60  EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

Query: 527 LSSIGEYKKAEEAHLKAIQLD-------------RNFLEAWGHLTQFYQDLANSEKALEC 573
             ++ + K+       A                 +            +  +   E     
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 574 LQQVLYIDKRFSKAY------------HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             +    DK                               ++ +   +    +       
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF----VLQCLAFYQKEIALYT-ASKI 676
           L           +   A +D   A++L            ++       +    +  A K+
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKL 299

Query: 677 NSEF 680
           +S  
Sbjct: 300 DSNN 303

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.1 bits (151), Expect = 6e-10
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
           N + CY  +   K V+    KAL+L P   +  + +  A   LG+  +A+        + 
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
               A ++  LE      A  +
Sbjct: 104 DFNDASIEPMLERNLNKQAMSK 125

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+++ DS  +  Y      +R      L+ +    +D DKA +LDP  +  YI   C  
Sbjct: 295 KALKL-DSNNSSVY-----YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348

Query: 114 SALGRKEEALSVWEK 128
               + ++  +++ +
Sbjct: 349 YRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.1 bits (125), Expect = 8e-07
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV---------IRDCDKALQLD 99
           L+ +  AI + ++ L   Y        A    +  L                 +KA +LD
Sbjct: 392 LKQYDLAIEL-ENKLDGIY-----VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA--LHQSADLKQFLELEELLTAAKQD 156
           P   QA I            +EA++++E+  + A  + +      F E  ++    + D
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 13/83 (15%), Positives = 24/83 (28%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                +   A   +   +     +      A   +            DKAL+LD      
Sbjct: 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G     L   ++A   ++K
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDK 329

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 5e-06
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            +++ KA   LD      Y        A    +            +A +  P   +    
Sbjct: 324 GKDFDKAKE-LDPENIFPY-----IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +     ++AL  ++ 
Sbjct: 378 FAEILTDKNDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +                D  KA++L P  + +YI      +      E  + ++K
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDK 295

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 15/90 (16%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
               +S+A R       +          A   +        ++  D A++L+  L   Y+
Sbjct: 357 CETLFSEAKRK-FPEAPEVP-----NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410

Query: 108 LKGCAFS---------ALGRKEEALSVWEK 128
                            +    EA ++ EK
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLEK 440

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  197 bits (502), Expect = 7e-56
 Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 31/295 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ I  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
                 A  +RG      G+  EA  D  K L+  P+  +       +            
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR------------GLLLHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +                  L  
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDL 648
            G++  A     S +  +PS  E           C+    +  EAI+     L +
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  191 bits (488), Expect = 6e-54
 Identities = 61/299 (20%), Positives = 110/299 (36%), Gaps = 31/299 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R    +  GK  +A+    +++     +  A + RG     Q +L+ A  DF + ++SNP
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 447 SAGEAWKRRGQARAA---------------LGESVEAIQDLSKALEFEPNSADILHERGI 491
           S  E  +   Q   A                 +   AI  L K LE     A++   R  
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              K  +   A+ DL A  KL  +N  A+  +      +G+++ +     + ++LD++  
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222

Query: 552 EAWGHLTQF------------YQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLL 595
             + H  Q                      A    + V+  +        ++        
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282

Query: 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
               +  +AI+  S  L ++P N+  L  RA  Y     Y EAI+DY+AA +   +  +
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  162 bits (411), Expect = 1e-43
 Identities = 50/270 (18%), Positives = 101/270 (37%), Gaps = 20/270 (7%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E     G+   A G+  +A+     A++ +P++    + R  V        AA+ DL+  
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF--------- 560
           + L  +  +A    G  L   G+  +AE+   K ++ + +  E     +Q          
Sbjct: 64  IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123

Query: 561 ------YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
                   D A+   A+  L ++L +    ++   LR       G+ +KAI DL +   +
Sbjct: 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIA 669
              N E  Y  ++ Y+ +G++  ++ +    L L+ D        K V +     +    
Sbjct: 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243

Query: 670 LYTASKINSEFCWFDIDGDIDPLFKEYWCK 699
           L    +       ++     +P   EY  +
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVR 273

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  150 bits (382), Expect = 6e-40
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
           K+  +    S+ +   +   Y +AI+  D+IL+      E    R      + E   AIS
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD------------ 484
           D   A +      EA+ +       LG+   ++ ++ + L+ + +               
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAH 540
            L E      +   +  A     + +K +         +   +    S   +  +A    
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            + +Q++ + + A     + Y      ++A++  +     ++   +           L Q
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 601 HKK 603
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  129 bits (326), Expect = 1e-32
 Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 15/199 (7%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            +   E G           A+    A V  D +N  AY        ++G+ K A     K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----- 597
            I L  +F  A              ++A +  ++VL  +    +       L+       
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 598 ----------LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
                        +  AI  L   L +   + E   LRA C+   GE R+AI D  AA  
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 648 LELDSMEKFVLQCLAFYQK 666
           L+ D+ E F      +YQ 
Sbjct: 183 LKSDNTEAFYKISTLYYQL 201

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  109 bits (275), Expect = 7e-26
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF- 427
            +   SK KS + +            G +  ++S   + LK D  +          +   
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 428 -----------QRELEAAISDFTEAIQSNPSAGE----AWKRRGQARAALGESVEAIQDL 472
                            A S +   +++ PS  E    + +R     +   + VEAI+  
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           S+ L+ EP++ + L +R       + ++ A++D  A  + ++ ++     L  A   + +
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 533 YKK 535
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100
           L     ++ A    +S++        Y ++       C+S+ E     IR C + LQ++P
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303

Query: 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
             + A   +  A+      +EA+  +E   EH
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.9 bits (151), Expect = 4e-10
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K + L      A + 
Sbjct: 23  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAA 153
           +G      G+ +EA   ++K        +      + L +  E++ L + A
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 9e-09
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
                +++ AI  LD +L      A+  E      RA C+ +    +  I D   A +L 
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRE-----LRAECFIKEGEPRKAISDLKAASKLK 184

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
               +A+      +  LG  E +LS         L 
Sbjct: 185 SDNTEAFYKISTLYYQLGDHELSLSE----VRECLK 216

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 39  ARIELAKLC-SLRNWSKAIRILD----------------SLLAQSYEIQDICNRAFCYSQ 81
           AR++   L        +A                     S L ++ E+Q + ++A     
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132

Query: 82  LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
              +   I   DK L++     +   L+   F   G   +A+S      + A  
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD----LKAASK 182

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 8e-05
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           ++R  S+ +++ +     +       +RA  Y   E++   I+D + A + +    Q   
Sbjct: 291 AIRICSEVLQM-EPDNVNAL-----KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344

Query: 108 LKGCAFSALGRKEE 121
               A   L + ++
Sbjct: 345 GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 46  LCSLRNWSKAIRILDSLLA---QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102
                   KAI  L +       + E       +  Y QL  H+  + +  + L+LD   
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEA--FYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

Query: 103 LQAYILKGCAFSALGRKEEALSVWEKG-YEHALHQSADLKQFLELE 147
            + +             E A  +   G Y  A    +  +  ++ E
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT---SKYESVMKTE 264

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
           +++                  +     A+  DP    AY  +   F A+G+ + AL
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL 57

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  197 bits (502), Expect = 6e-55
 Identities = 60/295 (20%), Positives = 105/295 (35%), Gaps = 31/295 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ IQ 
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---------------LHER 489
                 A  +RG      G+  EA  D  K L+  P+  +                L  +
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL------------LHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +     +            L  
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAIKDYDAALDL 648
            G++  A     S +  +PS  E           C+    +  EAI+     L +
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  171 bits (435), Expect = 5e-46
 Identities = 47/306 (15%), Positives = 112/306 (36%), Gaps = 33/306 (10%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTAR 425
              RL RG   + +GK   A   F ++LK +P   E                L  +    
Sbjct: 94  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
               +  AAI+   + ++      E  + R +     GE  +AI DL  A + + ++ + 
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------------LSSIGEY 533
            ++   + ++  D   ++ ++  C+KLD+++K  + +                L   G Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF----YQDLANSEKALECLQQVLYIDKRFSKAYH 589
             A   +   ++ + +  E      +     +       +A+    +VL ++     A  
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            R         + +AI+D  +    + ++ +           + + ++  +DY   L ++
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK--RDYYKILGVK 391

Query: 650 LDSMEK 655
            ++ ++
Sbjct: 392 RNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  171 bits (434), Expect = 6e-46
 Identities = 51/307 (16%), Positives = 108/307 (35%), Gaps = 31/307 (10%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M+       G     +     +++D            E     G+   A G+  +A+   
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQF 49

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
             A++ +P++    + R  V        AA+ DL+  ++L  +  +A    G  L   G+
Sbjct: 50  HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQF---------------YQDLANSEKALECLQQV 577
             +AE+   K ++ + +  E     +Q                     +   A+  L ++
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
           L +    ++   LR       G+ +KAI DL +   +   N E  Y  ++ Y+ +G++  
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229

Query: 638 AIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPL 692
           ++ +    L L+ D        K V +     +    L    +       ++     +P 
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289

Query: 693 FKEYWCK 699
             EY  +
Sbjct: 290 IAEYTVR 296

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  141 bits (358), Expect = 5e-36
 Identities = 50/343 (14%), Positives = 107/343 (31%), Gaps = 45/343 (13%)

Query: 326 ESYSKSSISDNKSSDSTESRSKLSFKWDMLK--ETSNEAKRNKKF-----CVTRISKSKS 378
           + + K   S+   ++  E++S+L    +M +    +  A  +  +      + +I +   
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438
              + R  R    + EG+   AIS      K      EA     T      + E ++S+ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 439 TEAIQSNPSAGEAWKRRGQARAA------------LGESVEAIQDLSKALEFEPNSADIL 486
            E ++ +      +    Q +               G   +A       ++ EP+ A+  
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

Query: 487 HE----RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                       K +    A+   S  ++++ +N +A      A      Y +A + +  
Sbjct: 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLG 599
           A + + N  +    L +  + L  S+K        +  + +     KAY    L  H   
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH--- 411

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                           P N +    +        +   A +  
Sbjct: 412 ----------------PDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.2 bits (219), Expect = 3e-18
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 23/152 (15%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                  + K   AI +  ++L+ +P    AL  R  A   +   + AI D+  A + N 
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSK------------------ALEFEPNSADILHE 488
           +  +  +   +A+  L +S +                         AL++ P++     E
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE 420

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
           +     KF D  AA E LS     D E +  +
Sbjct: 421 KKKAEKKFIDIAAAKEVLS-----DPEMRKKF 447

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCS----------LRNWSKAIRILD 60
           Y+L     ++ E+ E +++D           ++ KL               ++ A    +
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281

Query: 61  SLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115
           S++        Y ++       C+S+ E     IR C + LQ++P  + A   +  A+  
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341

Query: 116 LGRKEEALSVWEKGYEH 132
               +EA+  +E   EH
Sbjct: 342 EEMYDEAIQDYETAQEH 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K +QL      A + 
Sbjct: 46  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAAKQDR 157
           +G      G+ +EA   ++K               + L +  E++ L + A    
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALH 135
           A+      +  LG  E +LS         L 
Sbjct: 213 AFYKISTLYYQLGDHELSLSE----VRECLK 239

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 39  ARIELAK-LCSLRNWSKAIRILD----------------SLLAQSYEIQDICNRAFCYSQ 81
           AR++    L       +A                     S L +S E+Q + ++A     
Sbjct: 96  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155

Query: 82  LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
              +   I   DK L++     +   L+   F   G   +A+S      + A  
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD----LKAASK 205

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 7/142 (4%)

Query: 8   DSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY 67
            + +        I  +D+++ V    A     R E           KAI  L +      
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC--FIKEGEPRKAISDLKAASKLKN 208

Query: 68  EIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVW 126
           +  +     +  Y QL  H+  + +  + L+LD    + +             E A  + 
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268

Query: 127 EKG-YEHALHQSADLKQFLELE 147
             G Y  A    +  +  ++ E
Sbjct: 269 RDGRYTDAT---SKYESVMKTE 287

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+ ++ ++     +       +RA  Y   E++   I+D + A + +    Q       A
Sbjct: 319 SEVLQ-MEPDNVNAL-----KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372

Query: 113 FSALGRKEEA 122
              L + ++ 
Sbjct: 373 QRLLKQSQKR 382

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  176 bits (449), Expect = 6e-50
 Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 2/240 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G       ++  AI  +++  +        L  R  A   + E E AIS   +A++   
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +K   ++ A +G +   + DL K +E+   S    H    +  K ++    ++  
Sbjct: 70  EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKA 128

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
            A   ++ E        G    +  ++  A +A+ + I+        + +       L +
Sbjct: 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             +A+    + +  D  F +AY  +      + ++  A++ L +    D         R 
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  176 bits (448), Expect = 7e-50
 Identities = 40/260 (15%), Positives = 88/260 (33%), Gaps = 9/260 (3%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               +     G      R+ + AI  + +A + +         R  A    GE   AI  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+ A+E                 +  +    + DL   ++  +++ + +      L+ + 
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLR 119

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
             +K  +       ++    E      + Y   ++   A++   +++      ++ Y  R
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
              L  L    +AI D +  +  DP+ +     +A+   A+ EY  A++  DAA   + +
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 652 SMEKFVLQCLAFYQKEIALY 671
                         +EI   
Sbjct: 240 VNN-------GSSAREIDQL 252

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  161 bits (411), Expect = 7e-45
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 1/216 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R  A+  +G+Y +AIS  +  +++             + A        + D  + I+   
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            +     R       L  + + ++         P  A+     G   F   D+  AV+  
Sbjct: 104 KS-LTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +  +K   E+   Y+    AL+ +  + +A     KAI+ D NF+ A+         +  
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              ALE L      D   +     R +        +
Sbjct: 223 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 66.8 bits (164), Expect = 4e-12
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +++ I+      A+ Y      NRA   ++L      I DC+KA++ DP  ++AYI 
Sbjct: 159 VKAYTEMIKR-APEDARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212

Query: 109 KGCAFSALGRKEEALSVWEKGYEH 132
           K  A  A+     AL   +     
Sbjct: 213 KATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 54.1 bits (131), Expect = 6e-08
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           NRA    +   ++  I   + A++    +   Y +   +F+ +G     L   +K
Sbjct: 43  NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L +  K I      L            A   ++L   +  ++  +    ++P   +   L
Sbjct: 92  LGDLKKTIEYYQKSLT-------EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +G  +        A+  + +
Sbjct: 145 EGKEYFTKSDWPNAVKAYTE 164

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L+       + +   A+             Y       + ++   + ++  P   + Y  
Sbjct: 125 LKKAEAEAYV-NPEKAEEA-----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +  A + L    EA++   K
Sbjct: 179 RAAALAKLMSFPEAIADCNK 198

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +   + A+      +   Y        +  ++++    H + D  K ++     L  +  
Sbjct: 58  ISTLNDAVEQ-GREMRADY-----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR- 110

Query: 109 KGCAFSALGRKEEALSVWEK 128
                + L   E+ L   E 
Sbjct: 111 TADILTKLRNAEKELKKAEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + + +KAI   D    ++Y       +A     ++ +   +   D A   D  +      
Sbjct: 193 IADCNKAIEK-DPNFVRAY-----IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 109 KGCAFSALGRKE 120
           +          +
Sbjct: 247 REIDQLYYKASQ 258

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  177 bits (450), Expect = 3e-49
 Identities = 42/279 (15%), Positives = 83/279 (29%), Gaps = 10/279 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++D  +S          +     +   ++++DP +   L           +         
Sbjct: 21  NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           + +   PS   +W   G     +G   E A + LSKA   E          G       +
Sbjct: 81  KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
            + A+       +L K       Y+GL        K AE    +A+ +          + 
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 559 QFYQDLANSEKALECLQQVLYIDK---------RFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                    + A +     L   K         ++    +  G +   L ++ +A+    
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L + P N          +  +G +  A+  +  AL L
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  152 bits (385), Expect = 1e-40
 Identities = 42/265 (15%), Positives = 81/265 (30%), Gaps = 11/265 (4%)

Query: 395 GKYASAI-SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           G Y     ++  + +       + ++       +  + +      +  ++ +P       
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF-KFKDFNAAVEDLSACVKL 512
                   L ++ E      K ++  P++       G            A   LS    L
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           +K    A+   G + +   E+ +A  A+  A QL +       ++   Y    NS+ A  
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER 180

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---------NIECLY 623
              Q L I        H  G++    G+ K A K     L    +             L 
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

Query: 624 LRASCYHAIGEYREAIKDYDAALDL 648
                   + +Y EA+  +  AL L
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVL 265

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  151 bits (383), Expect = 2e-40
 Identities = 43/260 (16%), Positives = 81/260 (31%), Gaps = 30/260 (11%)

Query: 387 RGIAQVNEGK-YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            G   +  G     A     +    +  Y  A I  G + A + E + A++ +  A Q  
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                     G        S  A +  S+AL   P    ++HE G+V F+  ++  A + 
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQD 563
                                      +  A E    +        +     +L    + 
Sbjct: 216 ---------------------------FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
           L    +AL+  +Q L +  + +  Y   G +   +G  + A+    + LG+   +   + 
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308

Query: 624 LRASCYHAIGEYREAIKDYD 643
           +   C        EA    D
Sbjct: 309 MLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 10/88 (11%), Positives = 25/88 (28%)

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
           ++ +   + + +   +             +     K   K  S  +  DP +  CL +  
Sbjct: 4   NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63

Query: 627 SCYHAIGEYREAIKDYDAALDLELDSME 654
                + +  E        +DL   +  
Sbjct: 64  GTLVELNKANELFYLSHKLVDLYPSNPV 91

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQL-ELHKHVIRDCDKALQL 98
           L  L   ++   +   L+        S+           Y  +   ++H  R   KA  L
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSW-----FAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           + T   A+I  G +F+     ++A++     Y  A 
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAA----YFTAA 152

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                ++    ++   ++ +  +    +        +L     +     K + L P+   
Sbjct: 32  HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

Query: 105 AYILKGCAFSALGRK-EEALSVWEK 128
           ++   GC +  +G K E A     K
Sbjct: 92  SWFAVGCYYLMVGHKNEHARRYLSK 116

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
              L+ +++A+      L              + +S +   ++ +     AL L      
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305

Query: 105 AYILKGCAFSALGRKEEAL 123
           +  + G          EA 
Sbjct: 306 SVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 9/75 (12%), Positives = 21/75 (28%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
               I +S+      +  + + A  +      K   +     ++ DP       +     
Sbjct: 7   SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66

Query: 114 SALGRKEEALSVWEK 128
             L +  E   +  K
Sbjct: 67  VELNKANELFYLSHK 81

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R  SKA   L+     ++           ++    H   +     A QL        + 
Sbjct: 111 RRYLSKATT-LEKTYGPAW-----IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G  +      + A    E+ +  AL
Sbjct: 165 IGLEYGLTNNSKLA----ERFFSQAL 186

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
            + +  A+  + ++  +    +      N      +L+ +   +    +AL L P     
Sbjct: 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           Y   G   S +G  E A+      +  AL
Sbjct: 273 YSAIGYIHSLMGNFENAVDY----FHTAL 297

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 10/76 (13%), Positives = 16/76 (21%), Gaps = 6/76 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
             A ++                    Y      K   R   +AL + P         G  
Sbjct: 149 FTAAQL-MKGCHLPM-----LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

Query: 113 FSALGRKEEALSVWEK 128
               G  + A   +  
Sbjct: 203 AFQNGEWKTAEKWFLD 218

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  174 bits (444), Expect = 3e-49
 Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 14/271 (5%)

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD- 437
           ++ D              YA AI +F+++  +    P     R        + + A  D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 438 --FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
             +   + +  +    ++  G+     G+   AIQ    A++ +    D+  + G   + 
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
             +F  A++ +   ++    +   +  LG A     EY KA+ + +K ++L  N    + 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 556 HLTQFYQDLANSEK---ALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKA 604
              +         K   A    ++++ +             +A               KA
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
                + L +DP+N + +            +
Sbjct: 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  163 bits (415), Expect = 3e-45
 Identities = 39/250 (15%), Positives = 67/250 (26%), Gaps = 14/250 (5%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M  +                 AI  F +      ++   + RR      L +   A +D+
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 473 S---KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
                 +      +      G +  K    + A++   A V  D      Y  +G    +
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G +  A +   K I+      + +  L Q Y       KA     +VL +       Y 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 590 LRGLLLHGLGQHKK---AIKDLSSGLGIDPSN--------IECLYLRASCYHAIGEYREA 638
            R           K   A       + +            IE     A  Y    +  +A
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 639 IKDYDAALDL 648
              +   L L
Sbjct: 241 DAAWKNILAL 250

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  154 bits (392), Expect = 3e-42
 Identities = 39/258 (15%), Positives = 87/258 (33%), Gaps = 7/258 (2%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           +   R            EAI+  +K    + NS  I + R +  ++   ++ A +D+   
Sbjct: 4   DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 510 VK---LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                  K   + + Y G  L   G+   A + +  A+  D   L+ +G +  ++ +  N
Sbjct: 64  FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
              A++ +++ +       K ++  G   +   ++ KA       L + P+       RA
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 627 SCYHAIG---EYREAIKDYDAALDLELDSMEKFVLQCL-AFYQKEIALYTASKINSEFCW 682
               A     +   A   Y+  +++      K+  + + A                    
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243

Query: 683 FDIDGDIDPLFKEYWCKR 700
           +     +DP  K+     
Sbjct: 244 WKNILALDPTNKKAIDGL 261

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  113 bits (285), Expect = 6e-28
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 9/174 (5%)

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL---E 572
           N          L     Y +A E   K      N    +      Y +LA  + A    E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632
                +   K  S  +   G +L   GQ   AI+   + +  D + ++      S ++  
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121

Query: 633 GEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
           G +  AI+  +  +       + F            Y K  + +    ++    
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+   D+     Y           +         I+  +K ++   T  + +   G A+
Sbjct: 99  AAVDR-DTTRLDMY-----GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152

Query: 114 SALGRKEEALSVWEK 128
                  +A S + K
Sbjct: 153 YYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
             +       +  +             +       I+    A+  D T L  Y   G  F
Sbjct: 65  SKVNA-TKAKSADF-----EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 114 SALGRKEEALSVWEK 128
              G    A+   EK
Sbjct: 119 YNKGNFPLAIQYMEK 133

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    +   +   I   +K           Y  +   +  L + + A    E  Y   
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-YFSK 66

Query: 134 L 134
           +
Sbjct: 67  V 67

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCD---KALQLDPT 101
           L    N+++AI + + L A+ Y    I   RA CY +L  +    +D +     +     
Sbjct: 13  LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72

Query: 102 LLQAYILKGCAFSALGRKEEALSVWEK 128
               +   G      G+   A+  ++ 
Sbjct: 73  KSADFEYYGKILMKKGQDSLAIQQYQA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 17/89 (19%)

Query: 51  NWSKAIRILDSLLAQSYEIQDICNRAFCYSQLEL---HKHVIRDCDKALQLDPT------ 101
           ++ K + +    +   Y       RA   +  +            +K +++         
Sbjct: 164 SFVKVLEL-KPNIYIGY-----LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 102 --LLQAYILKGCAFSALGRKEEALSVWEK 128
             L++A       ++    K +A + W+ 
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKN 246

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  182 bits (464), Expect = 9e-49
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 7/301 (2%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY 414
           L +TS+E +  +             S D  L +        ++   ++I  +IL+ DP  
Sbjct: 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +       +     E         + +  +P     W   G     + +  EA +  SK
Sbjct: 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +   +P                 + + A+   +   +L +     Y +LG+    +G   
Sbjct: 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKA 587
            A E    +  L +        L     + ++ + A+   Q  L +       +K ++  
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
           +   G     L  +  AI  L+ GL +  ++       A  Y        AI     +L 
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

Query: 648 L 648
           +
Sbjct: 579 I 579

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  172 bits (438), Expect = 2e-45
 Identities = 38/293 (12%), Positives = 87/293 (29%), Gaps = 7/293 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISI-FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
            +L        + ++   + + +    KED  +  +L      +    +      D+  +
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           I     + +    +          ++ +   +K LE +P + D+         +  + N 
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW---GHLT 558
                +  V    E    +  +G+    + +  +A     K+  +D  F  AW    H  
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS- 416

Query: 559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
             +      ++A+        + +     Y   G+    LG    A + L S   +   +
Sbjct: 417 --FAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
              L           + + AI  +  AL L   +          +     A  
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  171 bits (434), Expect = 8e-45
 Identities = 35/270 (12%), Positives = 79/270 (29%), Gaps = 7/270 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
              + + +          +   +       + L+ +      +      ++  T+ ++ +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P   + +     +    GE  +     +  ++  P  A      GI        + A   
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
            S    +D +   A+     + +  GE+ +A  A+  A +L +     +  L   +  L 
Sbjct: 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL-------SSGLGIDPSN 618
           N   A E LQ    + +      +  G++       + AI                +   
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDL 648
                     Y  +  Y  AI   +  L L
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLL 545

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  163 bits (415), Expect = 2e-42
 Identities = 39/299 (13%), Positives = 97/299 (32%), Gaps = 5/299 (1%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRL--SRGIAQVNEGKYASAISIFDQILKEDP 412
           L   +N  ++++K     + +   I ++  +   RG    N   +  A   + + L  D 
Sbjct: 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 413 MYPEAL--IGRGTARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
              EA   +          E +  +  +++   + + +   +       + +  + +   
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +D   ++     S+D+L  +    F    F   +   +  +++D  N   Y     +L  
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            GE  K        +         W  +  +Y  +    +A     +   +D +F  A+ 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                    G+H +AI   ++   +              +  +G    A +   ++  L
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  128 bits (322), Expect = 1e-30
 Identities = 60/409 (14%), Positives = 116/409 (28%), Gaps = 29/409 (7%)

Query: 261 SKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLND 320
            ++   SR  S     +  D             +       N    +     S    L +
Sbjct: 4   KRTQTDSRMQSTPGNHNHPDAH--ANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLAN 61

Query: 321 SNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTR-ISKSKSI 379
           + +   S+ K   + N  S S E   +L     ++++    A     F   + +  + + 
Sbjct: 62  NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAA----FVGEKVLDITGNP 117

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFD----------------QILKEDPMYPEALIGRGT 423
           +  F L         G YA A  +                    L +   +  AL   G 
Sbjct: 118 NDAFWL--AQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE 175

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
              F+++ + A     +       A      RGQ    L     A +   +AL  +    
Sbjct: 176 TNPFRKDEKNANKLLMQDGGIKLEA-SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234

Query: 484 DILHERGIVNFKFKDFNAAVE---DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           +   +    +    D    +    + S   K D     +   L L  +S  +  +  E +
Sbjct: 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           L +I       +            +     L    ++L ID      Y L    LH  G+
Sbjct: 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE 354

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
             K     +  +   P            Y  + +  EA + +  +  ++
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  115 bits (289), Expect = 1e-26
 Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 7/184 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +   EG++  AIS +    +         +  G        +  A      +     
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFE-------PNSADILHERGIVNFKFKDF 499
                    G       +   AI     AL             A      G    K K +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +AA++ L+  + L   + + +T + L          A     +++ +  N + A   L +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

Query: 560 FYQD 563
             ++
Sbjct: 593 ALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           L      +K   I + L+      A ++           Y  +       R   K+  +D
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTW-----LAVGIYYLCVNKISEARRYFSKSSTMD 403

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           P    A+I    +F+  G  ++A+S     Y  A 
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISA----YTTAA 434

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 3/125 (2%)

Query: 5   KLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA 64
            L  ++       +   +    +      +  +  + +   L     +   + I   +L 
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT--LFVRSRFIDVLAITTKILE 333

Query: 65  QS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
              Y +           +      +    +  +   P     ++  G  +  + +  EA 
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 124 SVWEK 128
             + K
Sbjct: 394 RYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 54  KAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            A+ ++    +          N    Y +L+++   I   ++ L L       +      
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559

Query: 113 FSALGRKEEALSVWEK 128
           +        A++   +
Sbjct: 560 YLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           +I  A     R +SK+   +D     ++        A  ++    H   I     A +L 
Sbjct: 388 KISEA----RRYFSKSST-MDPQFGPAW-----IGFAHSFAIEGEHDQAISAYTTAARLF 437

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
                 Y+  G     LG    A    +  Y 
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 8/76 (10%), Positives = 17/76 (22%), Gaps = 6/76 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           + A R+        Y           + QL            +  L           G  
Sbjct: 431 TTAARL-FQGTHLPY-----LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484

Query: 113 FSALGRKEEALSVWEK 128
                  + A++ ++ 
Sbjct: 485 AFNKSDMQTAINHFQN 500

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  166 bits (423), Expect = 1e-46
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 3/242 (1%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  +  +      M     +GRG+      + E A   FT+AI+ N      + 
Sbjct: 5   HHHHHHSSGLVPRGSHMASMTGGQQMGRGSE---FGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
                 +++ E   A+    KALE + ++A   +  G V    + +  A +     ++  
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            EN   +  LG  L  + + K A     +A++L+ N  EA         +    ++AL  
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              V   D   + A++  G+        +KA++ L   + I P ++  L+ +    H   
Sbjct: 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

Query: 634 EY 635
            +
Sbjct: 242 HH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  162 bits (412), Expect = 3e-45
 Identities = 50/215 (23%), Positives = 84/215 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +       G Y  A   F + ++E+       I      +   ELE A++ + +A++ + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           SA  A+   G          EA     KAL     + D+ +  G V  K +    A+  L
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              V+L++ +  A    G+ L++ G   +A        + D    +A+ +    Y    N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            EKALE L + + I      A H + LL H    H
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  159 bits (405), Expect = 3e-44
 Identities = 42/245 (17%), Positives = 90/245 (36%), Gaps = 11/245 (4%)

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARA----ALGESVEAIQDLSKALEFEPNSADIL 486
           + ++      +    P         G  +       G+  +A +  +KA+E     A   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                +     +   A+      ++LD    +AY   G        YK+A++   KA++ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                + +  L      L   + AL  LQ+ + +++  ++A    G+ L   G   +A+ 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQK 666
             ++    DP + +  Y     Y       +A++  D A+D++ D M        A + K
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML-------ALHAK 233

Query: 667 EIALY 671
           ++  +
Sbjct: 234 KLLGH 238

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 8e-07
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  + KA+ + DS  A +Y           Y   E++K      +KAL+        + +
Sbjct: 77  LAFYDKALEL-DSSAATAY-----YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G     L + + AL       + A+
Sbjct: 131 LGTVLVKLEQPKLAL----PYLQRAV 152

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + +    ++           C +   +    +       + DP    A+   G  +
Sbjct: 150 RAVEL-NENDTEAR-----FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203

Query: 114 SALGRKEEALSVWEK 128
           +    +E+AL + +K
Sbjct: 204 AYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           +   ++KAI   +   A  Y      N A   S +   +  +   DKAL+LD +   AY 
Sbjct: 42  AAEAFTKAIEE-NKEDAIPY-----INFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 108 LKGCAFSALGRKEEALSVWEK 128
             G  +      +EA  ++EK
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEK 116

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+R         +             +LE  K  +    +A++L+    +A    G   
Sbjct: 116 KALRA-GMENGDLF-----YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169

Query: 114 SALGRKEEALSVWEK 128
           +  G  +EALS +  
Sbjct: 170 ANEGMLDEALSQFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            +  ++      +        +    S+   ++       KA++ +      YI      
Sbjct: 10  HSSGLVPRGSHMASMTGG--QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 114 SALGRKEEALSVWEK 128
           S++   E AL+ ++K
Sbjct: 68  SSVNELERALAFYDK 82

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 4e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  ++      D   A ++      N    Y+  E  +  +   DKA+ + P  + A   
Sbjct: 179 LSQFAAVTEQ-DPGHADAF-----YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 109 KGCAFSALGR 118
           K         
Sbjct: 233 KKLLGHHHHH 242

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  180 bits (457), Expect = 2e-46
 Identities = 37/301 (12%), Positives = 80/301 (26%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +   
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 673

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  + +          Q L   Q+ + +   A  +  +
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733

Query: 680 F 680
            
Sbjct: 734 Q 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  178 bits (452), Expect = 9e-46
 Identities = 37/293 (12%), Positives = 77/293 (26%), Gaps = 5/293 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P     +          +     +  
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPV 655

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 656 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE 715

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P+ +  +   
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKFV-----LQCLAFYQKEIALYTA 673
                A+   +  +        L L  +          Q L   Q+ + +   
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQ 828

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  175 bits (444), Expect = 8e-45
 Identities = 38/301 (12%), Positives = 78/301 (25%), Gaps = 6/301 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P+    +   G      +     +  
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 587

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +    A         ++   ++      +A  L    + A        Q L 
Sbjct: 588 LCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+    +  +   
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN 707

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  D +          Q L   Q+ + +   A  +   
Sbjct: 708 NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPA 767

Query: 680 F 680
            
Sbjct: 768 Q 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  174 bits (443), Expect = 1e-44
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 7/302 (2%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG     E  +AS  ++    L   P    A+      +     ++  +    +A   
Sbjct: 162 AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+   A       + AL      +  L +A    P+    +          +     + 
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            L     L  +   A    G    ++   ++      +A  L  + + A        Q L
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
              ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +  
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYT-ASKINS 678
                 A+   +  +     A  L  D +          Q L   Q+ + +      +  
Sbjct: 402 NGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTP 460

Query: 679 EF 680
             
Sbjct: 461 AQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  173 bits (440), Expect = 2e-44
 Identities = 35/293 (11%), Positives = 74/293 (25%), Gaps = 5/293 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 502 SNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 561

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L  + + A        Q L 
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYTA 673
                A+   +  +     A  L    +          Q L   Q+ + +   
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQ 794

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  172 bits (437), Expect = 6e-44
 Identities = 39/301 (12%), Positives = 82/301 (27%), Gaps = 7/301 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  Q         + +  Q     P    A+      +     ++  +    +     
Sbjct: 401 SNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT 459

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL    + +  L +A    P+    +                +  
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L  + + A        Q L 
Sbjct: 520 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 579

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P+ +  +   
Sbjct: 580 TVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 639

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSE 679
                A+   +  +     A  L  D +          Q L   Q+ + +   A  +  E
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 680 F 680
            
Sbjct: 700 Q 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  164 bits (417), Expect = 2e-41
 Identities = 36/294 (12%), Positives = 79/294 (26%), Gaps = 5/294 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q      +   A+      +     ++  +    +A    
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 689

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +E   A         ++   ++      +A  L  + + A        Q L 
Sbjct: 690 LCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+  + +  +   
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSMEKFV-----LQCLAFYQKEIALYTAS 674
                A+   +  +     A  L  D +          Q L   Q+ + +    
Sbjct: 810 IGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQD 863

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  158 bits (400), Expect = 2e-39
 Identities = 39/299 (13%), Positives = 80/299 (26%), Gaps = 5/299 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +    +  +     +   P
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP 189

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A       + AL      +  L +A    P     +          +     +  L
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  +   A         ++   ++      +A  L  + + A        Q L  
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +    
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 627 SCYHAIGEYREAIKDYDAALDLELDSME----KFVLQCLAFYQKEIALYT-ASKINSEF 680
               A+   +  +     A  L  D +         Q L   Q+ + +   A  +  + 
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  155 bits (394), Expect = 1e-38
 Identities = 34/293 (11%), Positives = 72/293 (24%), Gaps = 5/293 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASN 843

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD-----SMEKFVLQCLAFYQKEIALYTA 673
                A+   +  +        L  D     +      Q L   Q+ + +   
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQ 896

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  151 bits (383), Expect = 2e-37
 Identities = 32/266 (12%), Positives = 67/266 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +   L    + A        Q L 
Sbjct: 758 LCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALE 817

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 818 TVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASN 877

Query: 626 ASCYHAIGEYREAIKDYDAALDLELD 651
                A+   +  +        L LD
Sbjct: 878 IGGKQALETVQRLLPVLCQDHGLTLD 903

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  138 bits (349), Expect = 2e-33
 Identities = 34/292 (11%), Positives = 73/292 (25%), Gaps = 6/292 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q          A+      +     ++  +    +A    
Sbjct: 672 SNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPV 791

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L ++ + A        Q L 
Sbjct: 792 LCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 852 TVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN 911

Query: 626 ASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYT 672
                A+   +  +        L  D +          Q L   Q+ + +  
Sbjct: 912 G-GKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLC 962

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  137 bits (347), Expect = 4e-33
 Identities = 46/318 (14%), Positives = 87/318 (27%), Gaps = 19/318 (5%)

Query: 382 DFRLSRGIAQVNEGKYASAI-SIFDQILKEDPMYPEALIGRGTARAFQRE-------LEA 433
           D   +  +     G        I  ++      + EAL+G G   A           L  
Sbjct: 44  DASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGT 103

Query: 434 AISDFTEAIQSNPSAGEA-----WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
               +   I + P A         K+   ARA      +A +     L+ +      + +
Sbjct: 104 VAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAK 163

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           RG V        +      A + L      A         ++   ++      +A  L  
Sbjct: 164 RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 223

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             + A        Q L   ++ L  L Q   +      A          L   ++ +  L
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-----VLQCLAF 663
               G+ P  +  +        A+   +  +     A  L  D +          Q L  
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 343

Query: 664 YQKEIALYT-ASKINSEF 680
            Q+ + +   A  +  + 
Sbjct: 344 VQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 2e-11
 Identities = 27/246 (10%), Positives = 62/246 (25%), Gaps = 21/246 (8%)

Query: 386  SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            S    +         + +  Q          A+      +     ++  +    +     
Sbjct: 808  SNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 867

Query: 446  PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---- 501
            P    A       +       +A++ + + L        +  ++ +         A    
Sbjct: 868  PDQVVAIASNIGGK-------QALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETV 920

Query: 502  --AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
               +  L     L  +   A         ++   ++      +   L  N + A      
Sbjct: 921  QRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIAS-NG 979

Query: 560  FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
              Q L +    L      L      +   +   + L  LG  + A+  +  GL   P  I
Sbjct: 980  GKQALESIVAQLSRPDPAL------AALTNDHLVALACLGG-RPAMDAVKKGLPHAPELI 1032

Query: 620  ECLYLR 625
              +  R
Sbjct: 1033 RRVNRR 1038

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 3e-06
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 30  DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHV 88
             V+A A     + A    L    + + +L      +   +  I +       LE  + +
Sbjct: 190 AQVVAIASNNGGKQA----LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

Query: 89  IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQ 142
           +    +A  L P  + A         AL   +  L V  +          A+      KQ
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305

Query: 143 FLE-LEELLTAAKQ 155
            LE ++ LL    Q
Sbjct: 306 ALETVQRLLPVLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 5e-06
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L    + A         AL   +  L V  + + 
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627

Query: 132 H------ALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                  A+      KQ LE ++ LL    Q   +T + 
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 7e-06
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 8e-06
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 49  LRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           L    + + +L      + E +  I +       LE  + ++    +A  L P  + A  
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739

Query: 108 LKGCAFSALGRKEEALSVWEKG------YEHALHQSADLKQFLE-LEELLTAAKQDRSVT 160
             G    AL   +  L V  +          A+  +   KQ LE ++ LL    QD  +T
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 161 CEYDV 165
               V
Sbjct: 800 LAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 6e-05
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L      + + +  I +       LE  + ++    +A  L P  + 
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

Query: 105 AYILKGCAFSALGRKEEALSVWEKG------YEHALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQ 624

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 7e-05
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK----- 128
           +       LE  + ++    +A  L P  + A    G    AL   +  L V  +     
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 129 -GYEHALHQSADLKQFLE-LEELLTAAKQ 155
                A+      KQ LE ++ LL    Q
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 8e-05
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       +       LE  + ++    +A  L P  + A        
Sbjct: 285 QAHG-LTPDQVVAIA-----SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK 338

Query: 114 SALGRKEEALSVWEK 128
            AL   +  L V  +
Sbjct: 339 QALETVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 9e-05
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 48  SLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY 106
           +L    + + +L         ++  I +       L   + ++    +A  L P  + A 
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534

Query: 107 ILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
              G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L P  + A    G    AL   +  L V  + + 
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 132 ------HALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
                  A+  +   +    ++ LL    Q   +T + 
Sbjct: 391 LTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 69  IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  I +       LE  + ++    +   L P  + A         AL   ++ L V  +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 129 ------GYEHALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                     A+  +   KQ L  ++ LL    Q   +T + 
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 9e-04
 Identities = 14/84 (16%), Positives = 29/84 (34%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L P  + A         AL   +  L V  + + 
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHG 797

Query: 132 HALHQSADLKQFLELEELLTAAKQ 155
             L Q   +   +  ++ L   ++
Sbjct: 798 LTLAQVVAIASNIGGKQALETVQR 821

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  165 bits (420), Expect = 3e-45
 Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 19/270 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +  P   EA    G  +A   +   AI     A   
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P           +      +  A+  L   L  +P    +       +    D      
Sbjct: 85  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDL----- 139

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                                  ++  EY++       A++++ N  +    L   Y   
Sbjct: 140 --------------NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            N + A   L++ + +    ++ ++  G  L    + ++A+   +  L I+P  +  +Y 
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME 654
            A  Y  + +Y  A K    A+ +++    
Sbjct: 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  133 bits (337), Expect = 2e-34
 Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 15/234 (6%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            +    +D+     +     E     G +   L    EA        +  P   +     
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G+   + +    A+  L+    LD ++ + +  L ++ ++      A  +    +     
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 550 FLEAWGHLTQ---------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           + +      Q               F+       +    L   L ++   ++ +   G+L
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            +    +  A  +L   + + P + +      +        +EA+  Y+ ALD+
Sbjct: 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  116 bits (292), Expect = 2e-28
 Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 15/201 (7%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G  ++   D            +   E G+   K  +   A     A  +   E + A+  
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LGL  +   +   A  A   A  LD   +     L   + +  N+  AL  L+  L    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 583 RFSKAYHL---------------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           ++ +   +                        ++++    L + L ++P++ +       
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 628 CYHAIGEYREAIKDYDAALDL 648
            Y+    Y  A  +   A++L
Sbjct: 181 LYNLSNNYDSAAANLRRAVEL 201

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  111 bits (280), Expect = 9e-27
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 20/218 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTARAFQR 429
            +  ++  NE    +A++     L   P Y +                +       A   
Sbjct: 93  AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           E     +    A++ NP+  +     G           A  +L +A+E  P+ A + ++ 
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G           A++  +  + ++         + ++ S++ +Y  A +  ++AI +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
                G  ++       +    +  + +L +  R    
Sbjct: 273 GTTPTGEASR-----EATRSMWDFFRMLLNVMNRPDLV 305

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++   + E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 31  MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 91  VHAALAVSHTNEHNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 7/55 (12%), Positives = 21/55 (38%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  F ++    ++        AL+++P   Q +   G  ++     + A +   +
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 6/55 (10%), Positives = 13/55 (23%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +L          +   Q  P   +A+   G   +   +   A+     
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+ + +   AQ +      +    Y+    +     +  +A++L P   Q +   G   
Sbjct: 163 AALEM-NPNDAQLH-----ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216

Query: 114 SALGRKEEALSVWEKGYEHAL 134
           +   R +EAL      Y  AL
Sbjct: 217 ANGNRPQEALDA----YNRAL 233

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  163 bits (415), Expect = 3e-44
 Identities = 50/300 (16%), Positives = 103/300 (34%), Gaps = 19/300 (6%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG     I   +  + +DP   EA    G  +A     +AAI      ++ 
Sbjct: 69  FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+  +A      +        +A + L   ++  P    ++  +       +  + +  
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188

Query: 505 DLSACVKL------------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           D S    +            D  +    T LG+     GE+ +A +A   A+ +      
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            W  L     +   SE+A+E   + L I   F ++ +  G+    LG +++A+ +  + L
Sbjct: 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308

Query: 613 GIDPSNIECLYLR--ASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL 670
            +   +     +   A   +     R A+   D       +  +   L  L    +   L
Sbjct: 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP-----ELFQAANLGDLDVLLRAFNL 363

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  155 bits (395), Expect = 1e-41
 Identities = 50/282 (17%), Positives = 96/282 (34%), Gaps = 12/282 (4%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +S      N+   +++   +    +            G  R  + +L   I     AI  
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P   EAW+  G  +A       AI  L + LE +PN+   L    +          A E
Sbjct: 95  DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154

Query: 505 DLSACVKLDKENKSAYTYLGL----------ALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            L   +K + + K                  +       +  +E +L+A   + + ++  
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214

Query: 555 GH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L   +       +A++     L +       ++  G  L    + ++A++  +  L
Sbjct: 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
            I P  I   Y        +G YREA+ ++  AL L+  S  
Sbjct: 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  141 bits (357), Expect = 1e-36
 Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 13/265 (4%)

Query: 397 YASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
             S    +D++  E + M     I        Q  + A+   +    ++           
Sbjct: 12  VESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEE 71

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  R   G+    I  +  A+  +P  A+     GI   + ++  AA+  L  C++L   
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           N  A   L ++ ++    + A EA    I+ +  +     +            K+     
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191

Query: 576 QVLYIDKRFSKAYHL------------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
            +  + + + +A H              G+L H  G+  +AI   ++ L + P +     
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN 251

Query: 624 LRASCYHAIGEYREAIKDYDAALDL 648
              +         EA++ Y  AL++
Sbjct: 252 RLGATLANGDRSEEAVEAYTRALEI 276

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  130 bits (328), Expect = 8e-33
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 20/241 (8%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPN-- 481
             E E A +      +        W    +R   +     ++   +    K   F     
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 482 --SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                   E G+   K  D    +  + A +  D  +  A+ +LG+  +     + A  A
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             + ++L  N L+A   L   Y + ++ + A E L+  +  + ++      +        
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYL------------RASCYHAIGEYREAIKDYDAALD 647
           +  K+  D S   G+    +E  +                 +H  GE+  AI  ++AAL 
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241

Query: 648 L 648
           +
Sbjct: 242 V 242

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           K     +    I  +++ + Q     +         ++ E  +  I    + L+L P  L
Sbjct: 74  KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           +A +    +++    +++A    + 
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +       I   + A+  DP   +A+   G   +    ++ A+   ++
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  160 bits (407), Expect = 4e-44
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 8/263 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE---EAHLKAIQLDRNFLEAWGHLTQF 560
           +DL A  + D  +     +L LA   + E +  E   +   K+ +    +     +L   
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
             +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 192 S-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 621 CLYLRASCYHAIGEYREAIKDYD 643
                      +G+ ++ + + D
Sbjct: 251 EHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  156 bits (397), Expect = 7e-43
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 4/224 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+   + G  A A + F Q L   P  PE     G         +AA   F   ++ +P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A   RG A    G    A  DL    + +PN         +   K  D   A E L
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-LDEKQAKEVL 167

Query: 507 SACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +   + +  +  +   L +I      ++ +        L  +  E   +L ++Y  
Sbjct: 168 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           L + + A    +  +  +      +    L L  LGQ +  + +
Sbjct: 228 LGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  147 bits (373), Expect = 1e-39
 Identities = 49/263 (18%), Positives = 94/263 (35%), Gaps = 13/263 (4%)

Query: 422 GTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
                   + E  ++   + + S    +    +    RG    +LG    A  D S+AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
             P+  ++ +  GI   +  +F+AA E   + ++LD     A+   G+AL   G  K A+
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL-- 595
           +  L   Q D N       L    Q L + ++A E L+Q      +    +++    L  
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN 190

Query: 596 -HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
                  ++   D +    +     E  +     Y ++G+   A   +  A+   + +  
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 655 -----KFVLQCLAFYQKEIALYT 672
                   L  L   Q ++A   
Sbjct: 251 EHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  121 bits (305), Expect = 1e-30
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 4/193 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI     G + +A   FD +L+ DP Y  A + RG A  +    + A  D     Q +P
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAV 503
           +          A   L E  +A + L +  E         +          +        
Sbjct: 143 NDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
            D +    L +       YLG    S+G+   A      A+  + +      +       
Sbjct: 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261

Query: 564 LANSEKALECLQQ 576
           L   +  L    Q
Sbjct: 262 LGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  115 bits (290), Expect = 1e-28
 Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 7/211 (3%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           + + +       +   Q    L    + +         +   A +L+ERG++        
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A  D S  + +  +    + YLG+ L+  G +  A EA    ++LD  +  A  +    
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
                  + A + L      D           L    L + K+A + L            
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQW 179

Query: 621 CLYLRASCYHAI---GEYREAIKDYDAALDL 648
              +       I           D      L
Sbjct: 180 GWNIVEFYLGNISEQTLMERLKADATDNTSL 210

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  100 bits (252), Expect = 1e-23
 Identities = 34/247 (13%), Positives = 70/247 (28%), Gaps = 41/247 (16%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SN S     +          +    +  + + L                           
Sbjct: 1   SNTSW-RKSEVLAVPLQPTLQQEVILARMEQILA-------------------------- 33

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +    D E        G+   S+G    A     +A+ +  +  E + +L  +   
Sbjct: 34  ----SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
             N + A E    VL +D  ++ A+  RG+ L+  G+ K A  DL +    DP++     
Sbjct: 90  AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFV--------LQCLAFYQKEIALYT-AS 674
                   + E  +A +      +        +         +      ++  A  T  +
Sbjct: 150 WLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT 208

Query: 675 KINSEFC 681
            +     
Sbjct: 209 SLAEHLS 215

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 28/173 (16%), Positives = 49/173 (28%), Gaps = 9/173 (5%)

Query: 519 AYTYLGLALSSIGEYKKA----EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               L + L    + +      E+        D    +        Y  L     A    
Sbjct: 7   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF 66

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
            Q L I     + ++  G+ L   G    A +   S L +DP+       R    +  G 
Sbjct: 67  SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126

Query: 635 YREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYTASKINSEFCW 682
            + A  D  A    + +   +        Q L   Q +  L    + + +  W
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + +        +  ++  +  R   Y  L L      D  +AL + P + + +   G  
Sbjct: 29  EQILASRALTDDERAQL--LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 113 FSALGRKEEALSVWEKGYEHAL 134
            +  G  + A     + ++  L
Sbjct: 87  LTQAGNFDAAY----EAFDSVL 104

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
              LA      ++S+A+ I    + + +            +Q           D  L+LD
Sbjct: 58  LRALA----RNDFSQALAI-RPDMPEVF-----NYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           PT   A++ +G A    GR + A       Y+
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             + +    +    L+++            Y  L            A+  +      +  
Sbjct: 201 KADATDNTSL-AEHLSETN-----FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 254

Query: 109 KGCAFSALGRKEEALSVWEK 128
                S LG+ ++ L+  ++
Sbjct: 255 ALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCY----SQLELHKHVIRDCDKALQLDPTLLQ 104
             +  +A  +L     +S + Q   N    Y    S+  L + +  D      L   L +
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSE 216

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
                G  + +LG  + A ++++ 
Sbjct: 217 TNFYLGKYYLSLGDLDSATALFKL 240

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  159 bits (404), Expect = 8e-43
 Identities = 52/292 (17%), Positives = 99/292 (33%), Gaps = 28/292 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 68  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+LD  +        LG+  +  GEY KA +    A+ + 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307

Query: 608 LSSGLGIDPSNIECLYLRASCYHAI-----------GEYREAIKDYDAALDL 648
               L +   +        +    I           G+           L  
Sbjct: 308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  125 bits (315), Expect = 5e-31
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 26/279 (9%)

Query: 396 KYASAISI----FDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAG- 449
           ++  A S      D   K      E       A  +     +   + + +  Q       
Sbjct: 2   EFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPL 61

Query: 450 ---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    G  R   G+   A+     A++ +P   +     G    + +    A+  L
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ------- 559
             C++L  +N++A   L ++ ++    ++A E     ++    +        +       
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181

Query: 560 --------FYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                        +   +  E     + +             G+L +  G++ KA+   +
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           + L + P++        +      +  EA+  Y  AL+L
Sbjct: 242 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  111 bits (279), Expect = 2e-26
 Identities = 44/267 (16%), Positives = 84/267 (31%), Gaps = 32/267 (11%)

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNS--- 482
           F+R   A  SD     +      E  KR  +A   L +  +       K  +FE  +   
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 483 -ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
                 E G+   +  D   AV    A V+ D ++  A+ YLG   +   +   A  A  
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
           + ++L  +   A   L   + + +   +A E L+  L     ++                
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT------------ 170

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV---- 657
                   +  G   + +           +   + E  + + AA+ L+  S++  V    
Sbjct: 171 -------PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223

Query: 658 ---LQCLAFYQKEIALY-TASKINSEF 680
                    Y K +  +  A  +    
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +     +   A+ + ++ + Q  +  +         ++ E     I    + L+L P   
Sbjct: 73  RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
            A +    +F+    + +A  +   
Sbjct: 133 TALMALAVSFTNESLQRQACEILRD 157

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           K  +  +    + +             Q     + +   + A+Q DP  ++A+   G   
Sbjct: 51  KGYQFEEENPLRDHP--QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 108

Query: 114 SALGRKEEALSVWEK 128
           +   ++  A+S   +
Sbjct: 109 AENEQELLAISALRR 123

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 54  KAIRIL-DSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            A+R+   S+          C     ++    +   +     AL + P     +   G  
Sbjct: 206 AAVRLDPTSIDPDVQ-----CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260

Query: 113 FSALGRKEEALSVWEKGYEHAL 134
            +   + EEA++     Y  AL
Sbjct: 261 LANGNQSEEAVAA----YRRAL 278

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  131 bits (332), Expect = 2e-34
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 3/235 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
               V  G +    +   +  K      +A I  G     +   E A     +A++ +PS
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS 69

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           + +A            E   A ++  KAL  +  +A +L+  G   ++ K +  A + L 
Sbjct: 70  SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

Query: 508 ACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
              +  L  E    +  LGL    + +  +A+E   K+++L+RN       +        
Sbjct: 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
               A +          + +++  L   L         A         + P ++E
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  127 bits (322), Expect = 4e-33
 Identities = 42/229 (18%), Positives = 75/229 (32%), Gaps = 2/229 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R       +  +  +    A +A+ + G      G + +A   L KALE +P+SAD   
Sbjct: 16  PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-- 545
              +V     +   A E+    +  D  N       G  L     Y++A +  L+A Q  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
           L       + +L      +    +A E  ++ L +++           LL+   ++  A 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195

Query: 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME 654
           +           N   L L         +   A         L   S+E
Sbjct: 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  100 bits (252), Expect = 8e-24
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 2/175 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-- 444
             +    E +   A   + + L  D      L   G     Q+  E A     EA Q   
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P     ++  G     + +  +A +   K+L    N   +  E   + +K +++  A +
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
                 +   +N  +            +   A    L+  +L    LE      +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 86.9 bits (216), Expect = 5e-19
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 1/133 (0%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
            + +    L   G +   ++  LK  +      +A+  L   Y    N+E+A   L++ L
Sbjct: 6   HHHHHSSGLVPRGSHM-GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            ID   + A+    ++     + K A ++    L  D  N   L       +    Y EA
Sbjct: 65  EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124

Query: 639 IKDYDAALDLELD 651
            +    A    L 
Sbjct: 125 YQRLLEASQDTLY 137

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  135 bits (340), Expect = 1e-33
 Identities = 49/329 (14%), Positives = 95/329 (28%), Gaps = 54/329 (16%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QREL 431
           + +S  +D        +    +   A   F++ L++ P  PE   G   A          
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILH 487
           + AI    +AI+ NP               +     E  E  + + +ALE  P   D+L 
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--------------- 532
                  +  + + A+E L   ++    N   +  +G    +                  
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

Query: 533 ----YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA- 587
                  A     KA + + N       L   +      E+A    Q+    +       
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 588 ---YHLRGLLLHGLGQHKKAIKDLSSGLGI------------------------DPSNIE 620
                     L+ +    KAI     G+ I                        + ++ E
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLE 649
            L++ A       + ++A +D +  L+  
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESG 460

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  133 bits (335), Expect = 5e-33
 Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 45/351 (12%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           F W++++  ++      K       +++             +  +G+  +A+    +  +
Sbjct: 20  FTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEE 79

Query: 410 ---------EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAW 452
                     +                   L        +               + E  
Sbjct: 80  LIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139

Query: 453 KRRGQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN---AAVEDLS 507
              G  R   G +    A     KALE +P + +      I +++  ++     A++ L 
Sbjct: 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

Query: 508 ACVKLDKENKSAYTYLGLALSSI----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             ++L+ +N+     L L L  +     E  + E+   +A++      +      +FY+ 
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-------------------A 604
               +KA+E L++ L      +  +   G                              A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655
           +  L      + +      + AS +    +Y EA   +      EL  + K
Sbjct: 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 98.1 bits (244), Expect = 2e-21
 Identities = 34/249 (13%), Positives = 73/249 (29%), Gaps = 33/249 (13%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
              +      + ++ L++ P   + L         + E + AI    +A++  P+     
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 453 KRRGQA-------------------RAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
            + G                     R  L     A+  L KA E   N   +      ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344

Query: 494 FKFKDFNAAVEDLSACVKLDKENKSA----YTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                +  A          +    +       Y    L  +    KA    ++ +++++ 
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             E    +    Q +A  +  L         +   S+A H+   L     + ++A +D  
Sbjct: 405 SRE-KEKMKDKLQKIA--KMRLS-------KNGADSEALHVLAFLQELNEKMQQADEDSE 454

Query: 610 SGLGIDPSN 618
            GL      
Sbjct: 455 RGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 84.2 bits (208), Expect = 5e-17
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 33/228 (14%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-------------------RAFQ 428
                 + +   AI +  + L+  P         G                     R   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD--IL 486
             +  A++   +A ++N +            A   +  EA     K    E       +L
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 487 HER--GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
           H R      ++ K  + A+      VK++++++     +   L  I +           +
Sbjct: 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-KMKDKLQKIAK---------MRL 423

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
             +    EA   L    +     ++A E  ++ L        A    G
Sbjct: 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 16/156 (10%)

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593
           K + E+ L+  QL  +F   W  L +    L + E  +   +      +  +   +L   
Sbjct: 6   KNSLESSLR--QLKCHF--TWN-LMEGENSLDDFEDKV-FYRTEFQNREFKATMCNLLAY 59

Query: 594 LLHGLGQHKKAIKDL---------SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           L H  GQ++ A++ L               +  ++      A  Y+ +G   +     D 
Sbjct: 60  LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119

Query: 645 ALDLELDSMEKFVLQCLAFYQKE-IALYTASKINSE 679
              +       + ++      +E           +E
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  127 bits (321), Expect = 2e-33
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 18/207 (8%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA----------------LIGRGT 423
           SVD  L +  A +  G+   A+S F Q +  +    E                       
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A    R  + A   + E +Q  P+  +  +   + +   G+  +A++   K L+ E ++ 
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                 G   +   +     +E     +    + + A    GL+      Y+KA  +  K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEK 569
            I    +  EA   L +  +      +
Sbjct: 183 VILRFPST-EAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  126 bits (317), Expect = 5e-33
 Identities = 27/220 (12%), Positives = 66/220 (30%), Gaps = 19/220 (8%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           +   ++  A    G++ +A+    + +    +  ++ +   +                  
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD----------------- 47

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
            K  + +    T L LA      Y KA   + + +Q   N ++      +        + 
Sbjct: 48  -KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASC 628
           AL   +++L ++     A    G   +   +  KK ++     L          Y     
Sbjct: 107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEI 668
                 Y +A       +     +  +  L  +   +KE+
Sbjct: 167 KLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEV 206

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 99.4 bits (248), Expect = 9e-24
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 2/166 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
           T + K+  IS        +A      Y  A   + ++L++ P   + L      +  + +
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLSKALEFEPNSADILHER 489
            + A+  + + +Q       A    G       E   + ++   K L          +  
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           G+       +  A   L   +      ++  T L   L    E  +
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKT-LDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 10/78 (12%), Positives = 25/78 (32%)

Query: 51  NWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110
           + ++     +         +     A  Y +   +        + LQ  P  +       
Sbjct: 36  DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95

Query: 111 CAFSALGRKEEALSVWEK 128
                 G++++AL ++EK
Sbjct: 96  EMQVCRGQEKDALRMYEK 113

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRA-FCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           LR + K +++ ++    +           + Y   E  K  +    K L     +  A  
Sbjct: 108 LRMYEKILQL-EADNLAAN-----IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161

Query: 108 LKGCAFSALGRKEEALSVWEKGYE 131
             G +     R E+A +  +K   
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
               RN+ KA      LL      +  +   A         K  +R  +K LQL+   L 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 105 AYILKGCAFSALGRKE-EALSVWEK 128
           A I  G  +     +E + L    K
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYK 148

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  134 bits (338), Expect = 2e-33
 Identities = 42/276 (15%), Positives = 94/276 (34%), Gaps = 20/276 (7%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSNPSAGEAW 452
           + +    +   +++L    +  +AL+ +G A          A    ++A++  P   EAW
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVN--FKFKDFNAAVE 504
            + G+     G+   A    S AL    N         +L +    +     +    +V 
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 505 DLSACVKLDKENKSAYTYLGLALSS--------IGEYKKAEEAHLKAIQLDR---NFLEA 553
                V++D  +  ++  LG A  S            ++A  A+ +A ++DR   +  + 
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
             +    ++   +  +ALE   Q   +D  + +       LL  L +    ++       
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
               ++      A          ++       L+L+
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELK 356

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  133 bits (336), Expect = 3e-33
 Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 22/251 (8%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNS 482
            +  Q E+E  +    E + S     +A   +G+A     + S EA   LSKA++ EP  
Sbjct: 77  QQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL- 541
            +  ++ G V +K  D  +A    S  +   K NK +   L + L  +      E +   
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 542 --------KAIQLDRNFLEAW-----GHLTQFY---QDLANSEKALECLQQVLYIDKR-- 583
                    A+Q+D     +W      +L+ ++   Q+   S++AL    Q   +D++  
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 584 -FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
                +  R  L      + +A++  S    +DP+  E           +      ++  
Sbjct: 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315

Query: 643 DAALDLELDSM 653
                 +L SM
Sbjct: 316 GKTKPKKLQSM 326

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  112 bits (280), Expect = 5e-26
 Identities = 46/298 (15%), Positives = 102/298 (34%), Gaps = 30/298 (10%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           Q +    M  +            + L   +  F ++     S  +A +++   +    E 
Sbjct: 28  QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ---EEM 84

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLG 524
            + +Q + + L      A  L  +G       D++  A   LS  VKL+ E   A+  LG
Sbjct: 85  EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG 144

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---------NSEKALECLQ 575
                 G+   A      A+   +N   +  +L+   + L          +   ++   +
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 576 QVLYIDKRFSKAYHLRGLLL--------HGLGQHKKAIKDLSSGLGID---PSNIECLYL 624
             + +D    +++++ G                 ++A+   +    +D    SN +    
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALYTASKIN 677
           RA+ +     Y EA++ +  A  L+    E     + +L+ L+     +     +K  
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPK 321

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  100 bits (251), Expect = 2e-22
 Identities = 39/281 (13%), Positives = 83/281 (29%), Gaps = 27/281 (9%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFK 497
              Q             +A+  L +    +  L    +  FE +S +    +       +
Sbjct: 25  TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD--VQE 82

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY-KKAEEAHLKAIQLDRNFLEAWGH 556
           +    ++ +   +   +    A    G AL+   +Y  +AE    KA++L+   +EAW  
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK---------KAIKD 607
           L + Y    +   A  C    L   K    +     ++L  L              +++ 
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 608 LSSGLGIDPSNIECLYLRASCY--------HAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
               + +D  +    Y+  + Y              ++A+  Y  A  ++     K    
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD----RKASSN 257

Query: 660 CLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKR 700
                 +                F     +DP + E   + 
Sbjct: 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 87.0 bits (215), Expect = 7e-18
 Identities = 28/211 (13%), Positives = 52/211 (24%), Gaps = 55/211 (26%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEAL---------IGRGTARAFQRELEAAISD 437
            G     +G   SA + F   L        +L         +   +     R +  ++  
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 438 FTEAIQSNPSAGEAWKRRGQARAA-----------LGESVEAIQDLSKALEFEPNSADIL 486
              A+Q +   G +W   G A  +             +++ A     K      ++ D  
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD-- 259

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                                            +            Y +A E   +A  L
Sbjct: 260 --------------------------------LHLNRATLHKYEESYGEALEGFSQAAAL 287

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQV 577
           D  + E      Q  + L+     LE   + 
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 2/117 (1%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
           ++ +  S + D  L+R      E  Y  A+  F Q    DP +PE          F   L
Sbjct: 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +    +       +     R            ++       LE +P     L  
Sbjct: 309 TSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKP--LSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 7e-05
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            NRA  +   E +   +    +A  LDP   +    +      L R    L    K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 54  KAIRILDSLLAQSYEIQDIC-NRAFCYSQL-ELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           K ++ ++ +L  +         +    +   +          KA++L+P L++A+   G 
Sbjct: 86  KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145

Query: 112 AFSALGRKEEALSVWEK 128
            +   G    A + +  
Sbjct: 146 VYWKKGDVTSAHTCFSG 162

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  127 bits (321), Expect = 3e-33
 Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 24/233 (10%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +  +  G         +AA++ F  A++ NP   EA     + +  LG    A+++   
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
            +   P                                     + Y          G  +
Sbjct: 65  LVARTPRYLGGYMVLSEA-----------------------YVALYRQAEDRERGKGYLE 101

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +A      A +++  +          Y  L   +KA   L+Q L ++    +       L
Sbjct: 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAEL 160

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              +G+  +A+   +  L   P +++     AS     G+  EA +       
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  125 bits (316), Expect = 1e-32
 Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 46/241 (19%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+     G+Y +A+++F++ LKE+P  PEAL      +     +  A+ +    +   P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 447 SAGEAWKRRGQARAALGESV-----------EAIQDLSKALEFEPNSADILHERGIVNFK 495
                +    +A  AL               +A+  L  A    P  A            
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP----------- 119

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
                                   +   GL  + +GE  KAE +  +A+ L+ +  E   
Sbjct: 120 -----------------------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615
            L + Y  +   ++AL    + L    +           L   G+ ++A +  +      
Sbjct: 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

Query: 616 P 616
            
Sbjct: 216 H 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  104 bits (262), Expect = 2e-25
 Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 49/218 (22%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           +Q+     +   R G    ALG    A+    +AL+  P   +                 
Sbjct: 1   MQTAE---QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----------------- 40

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
                            A  +L      +G    A E     +     +L  +  L++ Y
Sbjct: 41  -----------------ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 562 QDLANS-----------EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
             L              E+AL  L+    ++ R++  +  RGL+   LG+  KA   L  
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            L ++    E     A  Y ++G   EA+  Y  AL+ 
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 98.4 bits (246), Expect = 3e-23
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-----------RAFQRELEAAI 435
               Q+  G    A+     ++   P Y    +    A              +  LE A+
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
           S   +A + NP       +RG   A LGE  +A   L +AL  E    +I      +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLS 163

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               + A+   +  ++   ++         AL   G+ ++A  A         +
Sbjct: 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + D+   +          A  Y  +      +    KAL+  P  L   +    A 
Sbjct: 143 QALALEDT--PEIR-----SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195

Query: 114 SALGRKEEALSVWEKGYEHALH 135
              G+ EEA       + H  H
Sbjct: 196 LLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           Q+          L  +   +   ++AL+ +P   +A          LG    A     + 
Sbjct: 6   QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA----LEN 61

Query: 130 YEHAL 134
            +  +
Sbjct: 62  GKTLV 66

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A++  +    ++         A    +L L    + +    +   P  L  Y++   A+
Sbjct: 30  RALKE-NPQDPEAL-----YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146
            AL R+ E     +   E AL   + LK    +
Sbjct: 84  VALYRQAEDRERGKGYLEQAL---SVLKDAERV 113

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 17/86 (19%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV-----------IRDCDKALQLDPTL 102
             +          Y        +  Y  L                 +     A +++P  
Sbjct: 64  TLVAR-TPRYLGGY-----MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

Query: 103 LQAYILKGCAFSALGRKEEALSVWEK 128
              ++ +G  ++ LG +++A +  ++
Sbjct: 118 APLHLQRGLVYALLGERDKAEASLKQ 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  123 bits (311), Expect = 2e-32
 Identities = 26/169 (15%), Positives = 60/169 (35%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +GI+    G+Y+ A+ + +Q+   D    +  +  G A      ++        ++   P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +     G     + +   A+  L K  E  P + ++    G+       F+ A++  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
              + L       +  +  +   +G +++A     KA +LD        
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  122 bits (308), Expect = 6e-32
 Identities = 30/183 (16%), Positives = 65/183 (35%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           + ++      ++ +G + A  G   +A+  L +  + +    D+    GI   K    + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
             E L   +    +N    T LGL    + +Y  A    +K  + +         L    
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
            +L   ++A++  +  L +     K +         +G+H++A+        +D      
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

Query: 622 LYL 624
           L L
Sbjct: 181 LAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  116 bits (294), Expect = 5e-30
 Identities = 31/180 (17%), Positives = 70/180 (38%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
           D +       +G + A       A+    +   ++    +     G A    G      +
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
            L ++L   P++  +    G+   + + ++ AV  L    + +  N +    LG+AL ++
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G + +A ++   A+ L  N  +    +   Y+ +   E+AL   ++   +D+  S    L
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  101 bits (255), Expect = 7e-25
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 6/177 (3%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +  D   +  Y   G++ +  G Y +A     +    D   ++   HL   Y      ++
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
             E L++ L       K   + GL    + ++  A+  L      +P N    +      
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 630 HAIGEYREAIKDYDAALDLELDSMEK-----FVLQCLAFYQKEIALYT-ASKINSEF 680
             +G + EAI  +  AL L  +  +      F  + +  +++ +  +  A++++   
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +++        +             Y Q++ +   +    K  + +P         G A 
Sbjct: 67  RSLAD-APDNVKVA-----TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 114 SALGRKEEALSVWEK 128
             LGR +EA+  ++ 
Sbjct: 121 DNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 5/55 (9%), Positives = 20/55 (36%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           ++   +++   +   +   ++    D   +   +  G A+   G  +    + E+
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 7/80 (8%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +    +     D+            +    Y +           +++L   P  ++   +
Sbjct: 28  VMLLEQVYDA-DAFDVDVA-----LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G  +  + + + A+ +  K
Sbjct: 82  LGLTYVQVQKYDLAVPLLIK 101

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           K     + +                   L      I     AL L P   + +     ++
Sbjct: 101 KVAEA-NPINFNVR-----FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154

Query: 114 SALGRKEEALSVWEK 128
             +GR EEAL  ++K
Sbjct: 155 EQMGRHEEALPHFKK 169

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  110 bits (278), Expect = 2e-27
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 37/228 (16%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             + +    +  +    Y  A +  +  LK DP    A + R     + +  + A   F 
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 440 EAIQSNPSAGEAWKRRGQA-RAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKF 496
           +A+   P + E     G      L    E++    KAL     P                
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI------------ 114

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
                                 A    G+  +  G++  AE    +++     F  A+  
Sbjct: 115 ----------------------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           L +          A    ++     +       L G  +     + +A
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  103 bits (259), Expect = 5e-25
 Identities = 23/209 (11%), Positives = 49/209 (23%), Gaps = 37/209 (17%)

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           +          +         +  +A   +  AL+ +P +                    
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------------------ 43

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL-TQFY 561
                           A+         +    KA+E+  +A+ +  +  E   +      
Sbjct: 44  ----------------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87

Query: 562 QDLANSEKALECLQQVL--YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
             L    +++    + L          A   +G+     GQ   A   L   L   P   
Sbjct: 88  GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
                 A      G+  +A   +      
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSR 176

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 1/107 (0%)

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           +           L   Y    +  +A   ++  L  D +   A+ +R  +   L  + KA
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 605 IKDLSSGLGIDPSNIECLYLRASC-YHAIGEYREAIKDYDAALDLEL 650
            +     L I P + E            +    E++  +D AL    
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPT 108

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A  Y + + ++      + AL+ DP    A++++   +  L   ++A    ++ +  A
Sbjct: 13  QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA----QESFRQA 68

Query: 134 L 134
           L
Sbjct: 69  L 69

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  107 bits (268), Expect = 5e-25
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH------KKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++     +      ++ ++     + 
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673
           + P N              G   +     +  LDL+      +++  L    +++     
Sbjct: 269 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327

Query: 674 SKINSEF-----CWFDIDGDIDPLFKEYWC 698
                           +  + D + KEYW 
Sbjct: 328 DNKEDILNKALELCEILAKEKDTIRKEYWR 357

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score =  101 bits (253), Expect = 5e-23
 Identities = 41/262 (15%), Positives = 92/262 (35%), Gaps = 18/262 (6%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W         T  Y D A  E+ ++   +++ +   
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR--ASCYHAIGE--YREAI 639
              A++    +L   G   K    L+  L + PS+     +      Y  + E       
Sbjct: 273 NESAWNYLKGILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331

Query: 640 KDYDAALDL------ELDSMEK 655
              + AL+L      E D++ K
Sbjct: 332 DILNKALELCEILAKEKDTIRK 353

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 62.4 bits (151), Expect = 3e-10
 Identities = 18/138 (13%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  I     F + + +     Q    SE+A +  +  + ++      +H R +LL  L +
Sbjct: 87  VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146

Query: 601 H-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME----- 654
              + +  +++ +   P N +  + R      + +  + ++     L+ +  +       
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206

Query: 655 KFVLQCLAFYQKEIALYT 672
           ++V+Q    +  E+    
Sbjct: 207 QWVIQEFKLWDNELQYVD 224

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 19/178 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA------RAFQRELEAAISDFTE 440
           R         + + +   DQ+LKED         R            +  LE  +    E
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------ADILHE--R 489
            I+  P    AW          G S +    L++ L+ +P+           DI  +   
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLS-KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324

Query: 490 GIVNFKFKDFNAAVEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
              + K    N A+E       + D   K  + Y+G +L S    +     +++  + 
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQEEF 382

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  110 bits (276), Expect = 6e-25
 Identities = 45/281 (16%), Positives = 95/281 (33%), Gaps = 3/281 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
               +  +G    A+ ++ + L+  P +  A     +    Q +L+ A+  + EAI+ +P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +  +A+   G     + +   A+Q  ++A++  P  AD       ++    +   A+   
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
              +KL  +   AY  L   L  + ++   +E   K + +  + LE      +   +  L
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIECLY 623
                         + +    K   L           K +   L  G    D  N    +
Sbjct: 195 YPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH 254

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664
           L  S        +  +  Y  + D   +   K + +   F 
Sbjct: 255 LMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFI 295

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  109 bits (273), Expect = 1e-24
 Identities = 32/186 (17%), Positives = 75/186 (40%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
            P + ++L      +  Q  +E A+  + +A++  P    A           G+  EA+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
              +A+   P  AD     G    + +D   A++  +  ++++     A++ L       
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G   +A  ++  A++L  +F +A+ +L    Q + +     E +++++ I     +   L
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 591 RGLLLH 596
             +  H
Sbjct: 185 PSVHPH 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  107 bits (269), Expect = 4e-24
 Identities = 50/335 (14%), Positives = 105/335 (31%), Gaps = 7/335 (2%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           S P+  ++       +   G   EA++   KALE  P  A        V  +      A+
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
                 +++      AY+ +G  L  + + + A + + +AIQ++  F +A  +L   ++D
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE--- 620
             N  +A+   +  L +   F  AY      L  +       + +   + I    +E   
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183

Query: 621 ---CLYLRASCYHAIGEYREAI-KDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKI 676
                   +  Y     +R+AI + +      +++ + K   +     +          +
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243

Query: 677 NSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQK 736
           +S+F        +  +   +   +                R  +        D S     
Sbjct: 244 SSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCN 303

Query: 737 TALLLVADSIGKKIQYDCPGFLSNRRQHRMAGLAA 771
                     G  I  +  G+    R    A   A
Sbjct: 304 GKAADRIHQDGIHILVNMNGYTKGARNELFALRPA 338

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.0 bits (108), Expect = 7e-05
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L ++ +AIR +    A +Y      N      +++  +  ++   +A+Q++P    A+  
Sbjct: 63  LMHYKEAIR-ISPTFADAY-----SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 109 KGCAFSALGRKEEALSVWEKGYE-------------HALHQSADLKQFLELEELLTAAKQ 155
                   G   EA++ +    +             H L    D   + E  + L +   
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176

Query: 156 D 156
           D
Sbjct: 177 D 177

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 99.8 bits (250), Expect = 8e-25
 Identities = 43/130 (33%), Positives = 71/130 (54%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            +D R ++A++  G   +  G + +AI+     L +DP + E  Y   + Y+  G+Y EA
Sbjct: 63  ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122

Query: 639 IKDYDAALDL 648
           I+ Y  AL+L
Sbjct: 123 IEYYQKALEL 132

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 92.5 bits (231), Expect = 3e-22
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 34/169 (20%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+                         
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------------- 36

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 37  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           A+E  Q+ L +D R ++A++  G   +  G + +AI+     L +DP +
Sbjct: 88  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 90.5 bits (226), Expect = 2e-21
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+                      
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------------------- 104

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                       A+  LG A    G+Y +A E + KA++LD
Sbjct: 105 ------------AWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDA 644
           ++A++  G   +  G + +AI+     L +DP + E  Y   + Y+  G+Y EAI+ Y  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 645 ALDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
           AL+L+  S E +            Y + I  Y  A +++   
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+  
Sbjct: 55  IEYYQKALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G A+   G  +EA+  ++K
Sbjct: 109 LGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 26  KALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 80  YKQGDYDEAIEYYQK 94

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.2 bits (98), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score =  100 bits (250), Expect = 6e-24
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 35/196 (17%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVED 505
               A+ +RG       +   AI+DL +AL     N        G+   +FK F      
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL---QFKLFACE--- 122

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                            +    +   E+KKAEE    A  +                  +
Sbjct: 123 -------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHS 157

Query: 566 NSEKALECLQQVLYID 581
             +KA+EC+ +    +
Sbjct: 158 KIDKAMECVWKQKLYE 173

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 87.5 bits (217), Expect = 1e-19
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 19/168 (11%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           +    G+  +   ++K A +A                ++   Y  L N  +A +   + +
Sbjct: 8   SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSI 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS----------------SGLGIDPSNIECL 622
             DK  + AY  RG+L +   ++  AIKDL                  GL       E L
Sbjct: 65  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124

Query: 623 YLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIAL 670
           Y  A  Y    E+++A +    A  ++ +     + + +    K+   
Sbjct: 125 YNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 172

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
               ++W  A+    ++      I    N    Y+ L+      +   +++  D  L  A
Sbjct: 16  AADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +    + + A+   ++
Sbjct: 74  YFQRGMLYYQTEKYDLAIKDLKE 96

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 38/150 (25%)

Query: 376 SKSISVDFRLS-----RGIAQVNEGKYASAISIFDQILKEDP----------------MY 414
           ++SI+ D  L+     RG+      KY  AI    + L +                    
Sbjct: 61  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            E L       A + E + A      A                      +  +A++ + K
Sbjct: 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWK 168

Query: 475 ALEFEPNSADI-----LHERGIVNFKFKDF 499
              +EP    +      +ER +     KD+
Sbjct: 169 QKLYEPVVIPVGRLFRPNERQVAQLAKKDY 198

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 22/92 (23%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKAL-QLDPTLLQAYIL--- 108
           +++I   D  LA +Y       R   Y Q E +   I+D  +AL QL    L  Y +   
Sbjct: 61  TRSINR-DKHLAVAY-----FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 109 ------------KGCAFSALGRKEEALSVWEK 128
                           ++     ++A      
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 93.8 bits (234), Expect = 9e-23
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q+    + +A+  + + ++ +P        R  A +       A+ D   AI  +P
Sbjct: 18  EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +  +A+ R G A ++L + VEA+    KALE +P++        I   K ++
Sbjct: 78  AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 86.9 bits (216), Expect = 3e-20
 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 34/158 (21%)

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
           E +   A+ L   G    K ++F AAV      ++L+  N   +     A S +G Y  A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596
            +   +AI +D  +                                  SKAY   GL L 
Sbjct: 66  VQDCERAICIDPAY----------------------------------SKAYGRMGLALS 91

Query: 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
            L +H +A+      L +DP N             + E
Sbjct: 92  SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 86.1 bits (214), Expect = 5e-20
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
              + + +  E  K  G  +  +     A+    KA+E  P +A     R     K  ++
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             AV+D    + +D     AY  +GLALSS+ ++ +A   + KA++LD +          
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY------ 116

Query: 560 FYQDLANSEKALE 572
              +L  +E  L 
Sbjct: 117 -KSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 30/124 (24%), Positives = 53/124 (42%)

Query: 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468
           +ED    E L   G  +      EAA+  + +AI+ NP+    +  R  A + LG    A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528
           +QD  +A+  +P  +      G+          AV      ++LD +N++  + L +A  
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 529 SIGE 532
            + E
Sbjct: 126 KLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 70.3 bits (173), Expect = 2e-14
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            KAI  L+   A  +     CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A
Sbjct: 36  GKAIE-LNPANAVYF-----CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89

Query: 113 FSALGRKEEALSVWEKGYEH 132
            S+L +  EA++ ++K  E 
Sbjct: 90  LSSLNKHVEAVAYYKKALEL 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 16/82 (19%), Positives = 36/82 (43%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+    + + ++   +  +  R      LG +  A++D    + IDP+  +       
Sbjct: 29  EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              ++ ++ EA+  Y  AL+L+
Sbjct: 89  ALSSLNKHVEAVAYYKKALELD 110

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 7/119 (5%)

Query: 353 DMLKETSNEAKRNKKFCVTRISK-SKSISVD-----FRLSRGIAQVNEGKYASAISIFDQ 406
           + LK   NE  + + F    +    K+I ++     +  +R  A    G YA A+   ++
Sbjct: 13  ERLKTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 407 ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
            +  DP Y +A    G A +   +   A++ + +A++ +P           A   L E+
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 13/70 (18%), Positives = 30/70 (42%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639
            D   ++     G     +   + A+      + ++P+N      RA+ Y  +G Y  A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 640 KDYDAALDLE 649
           +D + A+ ++
Sbjct: 67  QDCERAICID 76

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 96.7 bits (240), Expect = 5e-22
 Identities = 36/257 (14%), Positives = 74/257 (28%), Gaps = 13/257 (5%)

Query: 395 GKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           G Y   I+   ++    P    E  +    A   QR+    +    E   S+    +A +
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD---EIKPSSAPELQAVR 69

Query: 454 RRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
              +  A+       + +L + +    +  +   L     + F  ++ +AA+  L     
Sbjct: 70  MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANSEK 569
           L+    +    L      +     A +   K    D +                    + 
Sbjct: 130 LECMAMTVQILL-----KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           A    Q++           + +       G+ + A   L   L  D  + E L       
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244

Query: 630 HAIGEYREAIKDYDAAL 646
             +G+  E    Y + L
Sbjct: 245 QHLGKPPEVTNRYLSQL 261

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 80.6 bits (198), Expect = 2e-16
 Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 9/248 (3%)

Query: 336 NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG 395
           N++     S  +   + D+    +  A+R     +  I  S +  +           +  
Sbjct: 20  NEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHS 79

Query: 396 KYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  + ++  D+ +    D      L+   +   + +  +AA+    +       A     
Sbjct: 80  RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA----- 134

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK--FKDFNAAVEDLSACVK 511
              Q    L     A ++L K  + + ++         V+     +    A         
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
                            + G ++ AE    +A+  D    E   +L    Q L    +  
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254

Query: 572 ECLQQVLY 579
                 L 
Sbjct: 255 NRYLSQLK 262

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 75.5 bits (185), Expect = 8e-15
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 13/223 (5%)

Query: 432 EAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           +  I++      S+P    E      +A  A  +    + ++  +   E  +  +  E  
Sbjct: 16  QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAE-- 73

Query: 491 IVNFKFKDFNAAVEDLSACV--KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                    +A V +L   +   +D  N +                 A    L+ +    
Sbjct: 74  -YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA----LRTLH-QG 127

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG--LLLHGLGQHKKAIK 606
           + LE      Q    L   + A + L+++   D+  +          L  G  + + A  
Sbjct: 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
                       +  L  +A+C+ A G +  A      ALD +
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 63.6 bits (154), Expect = 6e-11
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
            +       +         K   A  IF ++  +       L G+      Q   EAA  
Sbjct: 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD-LSKALEFEPNSADILHERGIVNFK 495
              EA+  +    E           LG+  E     LS+  +   +   I         K
Sbjct: 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277

Query: 496 FKDFNAAVEDLSA 508
             DF+  V   + 
Sbjct: 278 ENDFDRLVLQYAP 290

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R 429
             ++   S ++     +    + +G++ +A  +  + L +D  +PE LI          +
Sbjct: 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

Query: 430 ELEAAISDFTEAIQSNPS 447
             E      ++   ++ S
Sbjct: 250 PPEVTNRYLSQLKDAHRS 267

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 97.2 bits (242), Expect = 6e-21
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 2/177 (1%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +    +     A++  P    AW     A   +G++      + + L   P   + +   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G V +  +    A   L        E+     +LG AL   G+ + A  A+ +A QL   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--GQHKKA 604
                  L  + + L +         QV     +   A      L       +    
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 24/170 (14%), Positives = 44/170 (25%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
                 +      ++  P    A +    A     +  A        +  +P   EA  R
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G+ R       EA   L +A +  P    I    G          AA    +   +L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           E       L      + +++  +    +        + A        +D 
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA 172

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 91.1 bits (226), Expect = 6e-19
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 3/167 (1%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           D    +  L A V+   ++  A+  L  A   +G+    E A  + + L     EA   L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +         +A   LQQ               G  L   GQ + A    +    + P 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 618 NIECLYLRASCYHAIGEYR---EAIKDYDAALDLELDSMEKFVLQCL 661
                    +    + ++R          AA+   + ++E F     
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 15/208 (7%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +  +       A++       AW  L      + ++      +Q+ L +     +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
            G +     +H +A   L       P +              G+   A   Y  A   +L
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA--HQL 120

Query: 651 DSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDID---GDIDPLF---------KEYWC 698
              E ++   L  +++ +  + A  + S      +    G ++P           ++  C
Sbjct: 121 LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

Query: 699 KRLHPKNVCEKVYRQPPLRDSLKKGKLR 726
            R   + +   V    P R    KG LR
Sbjct: 181 ARTRAQAIAASVRPLAPTRVR-SKGPLR 207

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 87.2 bits (216), Expect = 8e-18
 Identities = 16/142 (11%), Positives = 31/142 (21%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
            +    +  L  A+   P                 D  A    +   + L   +  A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    +   + +A     +A             L    +D   +E A     +   +  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
                          L   +  
Sbjct: 123 EEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 24/143 (16%), Positives = 43/143 (30%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
               L    A++  G   +      + L   P +PEA+   G  R  Q+    A     +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A  + P         G A    G++  A    ++A +  P    I  +      +  D+ 
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

Query: 501 AAVEDLSACVKLDKENKSAYTYL 523
           A     +       +   A    
Sbjct: 143 ALDVLSAQVRAAVAQGVGAVEPF 165

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.1 bits (117), Expect = 7e-06
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 8/114 (7%)

Query: 39  ARIELAK-LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
           A + LA     + + +     +   LA      + +          + H        +A 
Sbjct: 25  AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFL 144
              P      +  G A    G+ E A + + +         +   Q  + ++ L
Sbjct: 85  DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 93.5 bits (233), Expect = 4e-20
 Identities = 49/324 (15%), Positives = 96/324 (29%), Gaps = 69/324 (21%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G    N G   + ++ F   ++      E L          G A  +  +   A+     
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    S  +   R G+A++          +G   EA     + L          +    
Sbjct: 112 DLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY----------------------- 522
           L+  G V                   + +    A  +                       
Sbjct: 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G+++ A E H + +++ R F +      A  +L   +  L   E A E  ++
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 577 VLYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L +           ++ +  G     L +   AI+       ++  LG         + 
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348

Query: 625 RASCYHAIGEYREAIKDYDAALDL 648
             + + AIG +  A+K  +  L L
Sbjct: 349 LGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 38/283 (13%), Positives = 79/283 (27%), Gaps = 51/283 (18%)

Query: 417 ALIGRGTARAFQRELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQ 470
           +      +           +      Q         S        G+     G+    + 
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 471 DLSKALEFE----PNSADILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY 522
               A++         + I  + G   F   D+N A++    DL+    ++     A + 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 523 --LGLALSSIGEYKKAEEAHLKAIQLDR-----------------------NFLEAWGHL 557
             LG  L  +G + +A     + + L R                         L      
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK----- 606
                      +A+E  Q+ L + +         +A    G   + LG  + AI+     
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 607 -DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             ++   G   +         + +  +G++ +A + Y   L L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 34/204 (16%), Positives = 62/204 (30%), Gaps = 27/204 (13%)

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKA 543
            + +                 +    +             G  L + G+ +        A
Sbjct: 15  NVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA 74

Query: 544 IQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGL 593
           IQ     L      +  L   Y  L +  KA++  +  L + K        +K+    G 
Sbjct: 75  IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134

Query: 594 LLHGLGQHKKAIK------DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
            L  +G+  +A         L+  LG   S    LY   + YHA G++           D
Sbjct: 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194

Query: 648 LELDSMEKFVLQCLAFYQKEIALY 671
           ++         + + FYQ+ + L 
Sbjct: 195 VKEALT-----RAVEFYQENLKLM 213

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 90.8 bits (226), Expect = 1e-19
 Identities = 50/324 (15%), Positives = 101/324 (31%), Gaps = 66/324 (20%)

Query: 388 GIAQVNEGKYASAISIFDQ---ILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           G      G   + +S F+    +  ED           G A  +  +   A+      + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 444 SNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHE 488
              + G+   + G+A+A          LG   EAI    + L+       +   A  L+ 
Sbjct: 72  LARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENK--------------------------SAYTY 522
            G V                    +                               A+  
Sbjct: 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGN 188

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E  ++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 577 VLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L + ++       +++ +  G     L  ++KAI        ++  L          + 
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308

Query: 625 RASCYHAIGEYREAIKDYDAALDL 648
             + Y A+G + +A+   +  L++
Sbjct: 309 LGNAYTALGNHDQAMHFAEKHLEI 332

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 76.5 bits (189), Expect = 5e-15
 Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 44/210 (20%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAE 537
           S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y KA 
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 538 EAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------S 585
           E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +        +
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRA------------- 626
           +A +  G + H  G+         +G   +         ++  Y                
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL-YEENLSLVTALGDRAAQ 182

Query: 627 --------SCYHAIGEYREAIKDYDAALDL 648
                   + ++ +G +R+A+  ++  L +
Sbjct: 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 57.6 bits (140), Expect = 9e-09
 Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 50/247 (20%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 90  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149

Query: 422 GTARAFQRELEAAISDFTEA------IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
                 +  L+AA+  + E       +    + G A+   G     LG   +A+    + 
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 476 LEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
           L        +          G       +F  A E     + L ++ K       +   L
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577
           G   + + +Y+KA + HLK + + +          A   L   Y  L N ++A+   ++ 
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 578 LYIDKRF 584
           L I +  
Sbjct: 330 LEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 30/190 (15%)

Query: 386 SRGIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +    +       +A+ ++++ L       +      A    G           A+    
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207

Query: 440 EAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSAD 484
           + +      G+   +  + RA          LGE   A +   K L            A 
Sbjct: 208 QRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

Query: 485 ILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEE 538
             +  G      +D+  A++     L+   +L            LG A +++G + +A  
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324

Query: 539 AHLKAIQLDR 548
              K +++ R
Sbjct: 325 FAEKHLEISR 334

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 91.0 bits (226), Expect = 1e-19
 Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 39/284 (13%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
               RG+ + ++ +Y  AI  + +  K     P                   +SD  E  
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEK---ELPF------------------VSDDIEKA 141

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + +    EA+    Q   ++   ++A+        +   +   L         FK ++ A
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 503 VEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFL 551
           +  L A ++L  + +       +   +  +    G+ + A E   KA ++          
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSS 610
           +    L+        ++KA + +++ L      S K Y    L L  + +     + +  
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321

Query: 611 GL------GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            L       +      C    A+ + +   + +A   Y   L  
Sbjct: 322 LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 80.2 bits (198), Expect = 5e-16
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 25/216 (11%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE------DLSACV 510
             R  + E +E I+   K L         L  RG+  F  K++  A+            V
Sbjct: 76  GNRPTVTELLETIETPQKKLT-GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQD 563
             D E    +  +  A   + +   +    L+A+ + +N         ++   +   Y D
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--- 614
             + +KAL  L+  L +          + +           G  + A++       +   
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

Query: 615 --DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                  + L+  +      G+ ++A +  +  LD 
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALE 572
           +  + G+      EY +A   + +A +            E    + + Y  +  +  ++ 
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162

Query: 573 CLQQVLYI-------DKRFSKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI 619
            + Q L I         R  ++  +          + KA+       +L+  +  D    
Sbjct: 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCL 661
             L   A+ Y   G+ + A++ +  A  +  + +   + + L
Sbjct: 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 24/215 (11%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
              A+ I+           ++L          +  + A+     A++           R 
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRF 220

Query: 457 QARA---------ALGESVEAIQDLSKALE-----FEPNSADILHERGIVNFKFKDFNAA 502
            A +           G+   A++   KA +            +L        K      A
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280

Query: 503 VE----DLSACVKL-DKENKSAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWG 555
            +     L        K  K  + +L        + +K  +   + +   L         
Sbjct: 281 FQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACAR 340

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
                ++   + E+A    ++VL   +   K   L
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 28/167 (16%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------------NFLEAWGH 556
           ++ D++    Y+ +      + +Y +  + +     +                 L+ +  
Sbjct: 45  MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL 104

Query: 557 LTQ--FYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKDL 608
             +  +  D     +A+   ++        S      + +       + + Q   ++  +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164

Query: 609 SSGLGI-------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L I           I+ L++ A  Y     Y +A+   +AAL+L
Sbjct: 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
                +   Y  A+   +  L+       D     +L+    +     + + A+  F +A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 442 IQSNPSAGEAWKRR-----GQARAALGESVEAIQDLSKALE--------FEPNSADILHE 488
            + +         +            G++ +A Q + + L+        F       L  
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                   +  +  +        L    ++          S   +++A   + K ++   
Sbjct: 309 VYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367

Query: 549 NFLE 552
           + L+
Sbjct: 368 DILK 371

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 85.2 bits (211), Expect = 2e-19
 Identities = 20/107 (18%), Positives = 41/107 (38%)

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
               L  + LE    L          + A +  Q +  +D   ++ +   G     LG +
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           ++A++  S G  +D +     +  A C+  +G+   A   + +A  L
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 84.0 bits (208), Expect = 4e-19
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+       ++ + L+  G   ++   ++ A +   A   LD  +   +  LG    S+G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
            Y++A +++     +D N      H  + +  L + + A         +         L 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 592 ---GLLLHGLGQHK 602
              G +L  +   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 4/133 (3%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++       LG      G++  A++       LD      +  L    Q L   E+
Sbjct: 11  RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           AL+       +D    +           LG    A     S   +  +      L A   
Sbjct: 71  ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA- 129

Query: 630 HAIGEYREAIKDY 642
              G   EA+   
Sbjct: 130 ---GAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 80.2 bits (198), Expect = 7e-18
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 3/134 (2%)

Query: 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
              +        E L   G  +    + + A   F      +      +   G  R +LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY 520
              +A+Q  S     + N           + +  D + A     +   L       ++  
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 521 TYLGLALSSIGEYK 534
              G  L ++   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 77.5 bits (191), Expect = 7e-17
 Identities = 17/98 (17%), Positives = 27/98 (27%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q   GK+  A  IF  +   D       +G G  R      E A+  ++     + 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           +         +    LG+   A      A         
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 77.1 bits (190), Expect = 9e-17
 Identities = 14/112 (12%), Positives = 27/112 (24%)

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
                  +    E     G  +   G+  +A +        +   A      G       
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  A++  S    +D        +       +G+   AE     A  L   
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 63.6 bits (155), Expect = 6e-12
 Identities = 11/79 (13%), Positives = 31/79 (39%)

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
           L  +  + +   +  +  G   +  G+   A K   +   +D  +        +C  ++G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 634 EYREAIKDYDAALDLELDS 652
            Y +A++ Y     ++++ 
Sbjct: 67  LYEQALQSYSYGALMDINE 85

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 W  A +I  +L     Y+ +       C   L L++  ++       +D    +
Sbjct: 28  QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
                      LG  + A      G+  A   +A       L     A  +
Sbjct: 88  FPFHAAECHLQLGDLDGAE----SGFYSARALAAAQPAHEALAARAGAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              + L  G  + + G Y  A+  +      D   P              +L+ A S F 
Sbjct: 51  DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 440 EAIQ---SNPSAGEAWKRRGQARAALGESVE 467
            A     + P+      R G    A+    +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEAVTARKD 141

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 90.8 bits (226), Expect = 2e-19
 Identities = 56/327 (17%), Positives = 107/327 (32%), Gaps = 72/327 (22%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G      G   + +S F+  ++   +  E L          G A  +  +   A+     
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    + G+   + G+A+A          LG   EAI    + L+       +   A  
Sbjct: 73  DLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 486 LHERGIV--------------------NFKFKDFNAAVEDLSACVKLDKENK------SA 519
           L+  G V                            AAV+     + L            A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALEC 573
           +  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 574 LQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI-EC 621
            ++ L + ++        ++ +  G     L  ++KAI      L I     D       
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDL 648
            +   + Y A+G + +A+   +  L++
Sbjct: 310 CWSLGNAYTALGNHDQAMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 86.6 bits (215), Expect = 5e-18
 Identities = 53/325 (16%), Positives = 96/325 (29%), Gaps = 63/325 (19%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G A      YA A+      L       +     +A    G         + AI      
Sbjct: 54  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113

Query: 442 IQSNPSA-------------GEAWKRRGQARAALG------ESVEAIQDLSKALEF---- 478
           +  +                G  +  +G++    G         E    L  A++F    
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173

Query: 479 ---------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
                               G  ++   +F  AV      + + KE         AY+ L
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQV 577
           G A   +GE++ A E + K + L R   +      +   L   Y  L + EKA++   + 
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 578 LYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYLR 625
           L I +  +      +A    G     LG H +A+       ++S  +G     +      
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353

Query: 626 ASCYHAIGE-YREAIKDYDAALDLE 649
           +     +G  Y           +++
Sbjct: 354 SDLQMVLGLSYSTNNSIMSENTEID 378

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 82.7 bits (205), Expect = 9e-17
 Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 54/287 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRRGQARAALGESVEAIQD 471
             L   G       +  A +S F  A+Q       +    + + G A   L +  +A++ 
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69

Query: 472 LSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SA 519
               L        +   A      G       +F+ A+      + + +E         A
Sbjct: 70  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 520 YTYLGLALSSIGE--------------------YKKAEEAHLKAIQLDRNFLE------A 553
              LG    + G+                     + A + + + + L     +      A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK- 606
           +G+L   +  L N   A+   +Q L I K F       +AY   G     LG+ + A + 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 607 -----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                 L+  L       +  Y   + Y  + +Y +AI  +   L +
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 80.0 bits (198), Expect = 7e-16
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 44/212 (20%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKK 535
             S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y K
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 536 AEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----- 584
           A E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +       
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125

Query: 585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRA----------- 626
            ++A +  G + H  G+          G   +         ++  Y              
Sbjct: 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF-YEENLSLVTALGDRA 184

Query: 627 ----------SCYHAIGEYREAIKDYDAALDL 648
                     + ++ +G +R+A+  ++  L +
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 65.4 bits (160), Expect = 4e-11
 Identities = 46/293 (15%), Positives = 83/293 (28%), Gaps = 69/293 (23%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 94  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
                 +  L+AA+  + E +    + G+   R  Q RA          LG   +A+   
Sbjct: 154 EFPEEVRDALQAAVDFYEENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAH 210

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            + L        +          G       +F  A E     + L ++ K       + 
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECL 574
             LG   + + +Y+KA + HLK + + +   +      A   L   Y  L N ++A+   
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330

Query: 575 QQVLYIDKRF-------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
           ++ L I +               S    + GL             ++ S L  
Sbjct: 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 83.8 bits (207), Expect = 5e-19
 Identities = 19/142 (13%), Positives = 41/142 (28%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G        ++   E   ++ + L+      ++   +  A     A   LD  +   +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    ++G+Y  A  ++     +D        H  +         +A   L     +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
              +   L   +   L   K  
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 81.5 bits (201), Expect = 3e-18
 Identities = 20/145 (13%), Positives = 33/145 (22%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G   S       + +      E L      +      E A   F      +      +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G  R A+G+   AI   S     +               +  +   A   L    +L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEA 539
                        S +   K  +E 
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 77.6 bits (191), Expect = 8e-17
 Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 4/145 (2%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
              +    ++   ++  +       L       G Y+ A         LD      +  L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
               Q +   + A+        +D    +        L   G+  +A   L     +  +
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 618 NIECLYLRASCYHAIGEYREAIKDY 642
             E   L       +    EAIK  
Sbjct: 122 XPEFXELST----RVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 75.7 bits (186), Expect = 3e-16
 Identities = 25/118 (21%), Positives = 37/118 (31%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G             ++  + LE    L          E A    Q +  +D   S+ +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            G     +GQ+  AI   S G  +D       +  A C    GE  EA      A +L
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 71.5 bits (175), Expect = 1e-14
 Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            L +         + +    E        +   G   +A          +   +      
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G        ++ A+   S    +D        +    L   GE  +AE     A +L  N
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQ 576
                    +F +        LE ++ 
Sbjct: 122 -------XPEFXELSTRVSSMLEAIKL 141

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 20/105 (19%), Positives = 30/105 (28%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    Q   G Y  A  +F  +   D       +G G  R    + + AI  ++     +
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
                      +     GE  EA   L  A E   N  +      
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 12/98 (12%), Positives = 28/98 (28%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
                 +  +  I     +  +      +  G ++ A     +   +D  +        +
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
           C  A+G+Y  AI  Y     +++              Q
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 1/118 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 +  A  +  +L     Y+ +       C   +  +   I        +D    +
Sbjct: 31  QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCE 162
                       G   EA S      E   +     +    +  +L A K  + +  E
Sbjct: 91  FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              F L  G  +   G+Y  AI  +      D   P              EL  A S   
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
            A +   +  E  +   +  + L    EAI+ L K ++ E
Sbjct: 114 LAQELIANXPEFXELSTRVSSML----EAIK-LKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF-- 656
           G        ++    I    +E LY  A   +  G Y +A   + A   L+      F  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 657 ---VLQCLAFYQKEIALY-TASKIN 677
                Q +  Y   I  Y   + ++
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMD 85

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ--S 444
            G+ Q + G Y  +I +F++ ++ DP   +  + +G A       E A+  +   I    
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +    + W  +  A   +       +      + E +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 77.9 bits (193), Expect = 3e-17
 Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 32/140 (22%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
               PE     G  +        +I  F +AIQ +P   + W  +G+A   L    EA+ 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
             +  +    +                                  NK  +     AL  I
Sbjct: 62  CYNYVINVIEDE--------------------------------YNKDVWAAKADALRYI 89

Query: 531 GEYKKAEEAHLKAIQLDRNF 550
              +   E      +L+ + 
Sbjct: 90  EGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 77.5 bits (192), Expect = 3e-17
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           +  +N   Y   G+     G Y ++ +   KAIQLD    + W    +   +L   E+A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 572 ECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           +C   V+ +  D+     +  +   L  +   +   +   +   ++  +
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 65.9 bits (162), Expect = 3e-13
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAI 639
           +  +  + Y+L G+L +  G + ++I      + +DP   +   ++    + +  Y EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 640 KDYDAALDLELDSMEK-------FVLQCLAFYQKEIALYT-ASKINSEFCWF 683
             Y+  +++  D   K         L+ +   + E  +    +K+       
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHHH 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             + +  +  G++ +   ++  +++     ++LD E    +   G AL ++  Y++A + 
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 540 HLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           +   I +  D    + W       + +   E   E  +    ++
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.9 bits (123), Expect = 6e-08
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQA 105
           S+  + KAI++ D   ++ +       +      LE ++  +   +  + +  D      
Sbjct: 25  SIDLFEKAIQL-DPEESKYW-----LMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           +  K  A   +  KE       +  E   
Sbjct: 79  WAAKADALRYIEGKEVEA----EIAEARA 103

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.9 bits (123), Expect = 6e-08
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                       +   I   +KA+QLDP   + +++KG A   L R EEA+  +  
Sbjct: 10  YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 17/101 (16%), Positives = 34/101 (33%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +++P   EA    G  +A   +   AI     A   
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           +P           +      +  A+  L   L  +P    +
Sbjct: 81  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 74.8 bits (184), Expect = 3e-16
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 477 EFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
            FE N      +   E G+   K  +   A     A  + + E + A+  LGL  +   +
Sbjct: 7   PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK 66

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
              A  A   A  LD   +     L   + +  N+  AL  L+  L    ++ 
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 443 QSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
            +NP    E     G +   L    EA        + EP   +     G+   + +    
Sbjct: 10  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL 69

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A+  L+    LD ++ + +  L ++ ++      A  +    +     +
Sbjct: 70  AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 68.6 bits (168), Expect = 6e-14
 Identities = 19/97 (19%), Positives = 30/97 (30%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           E           LAN  +A    + V   +    +A+   GL      +   AI  L+  
Sbjct: 18  ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
             +DP +I      A  +        A+    A L  
Sbjct: 78  RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 67.9 bits (166), Expect = 8e-14
 Identities = 24/101 (23%), Positives = 37/101 (36%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           MY E  +  G +      L  A   F    Q  P   EAW+  G  +A   +   AI  L
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + A   +P    +     + +    + NAA+  L A +   
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 67.9 bits (166), Expect = 9e-14
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 1/103 (0%)

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             +++     GL++  +    +A  A     Q +    EAW  L     +      A+  
Sbjct: 15  MYHENPME-EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
           L     +D +    +    +          A+  L + L   P
Sbjct: 74  LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 10/64 (15%), Positives = 18/64 (28%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
            GL +  L    +A     +    +P   E             +   AI   + A  L+ 
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 651 DSME 654
             + 
Sbjct: 83  KDIA 86

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++  +  E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 27  MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 87  VHAALAVSHTNEHNANAALASLRA 110

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 79.4 bits (197), Expect = 9e-18
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 34/151 (22%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+   
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KALE +PN+A+                                  A+  LG A    G+Y
Sbjct: 68  KALELDPNNAE----------------------------------AWYNLGNAYYKQGDY 93

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            +A E + KA++LD N  EA  +L    Q  
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 34/150 (22%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
           A+E  Q+ L +D   ++A    G      G
Sbjct: 96  AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 77.8 bits (193), Expect = 3e-17
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++A+E  Q+ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
            +D   ++A++  G   +  G + +AI+     L +DP+N E      +     G
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 75.1 bits (186), Expect = 2e-16
 Identities = 35/106 (33%), Positives = 52/106 (49%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
           +  EAW   G A    G+  EAI+   KALE +PN+A+     G  
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 68.6 bits (169), Expect = 5e-14
 Identities = 32/100 (32%), Positives = 54/100 (54%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L +DP+N E  Y   + Y+  G+Y EAI+ Y  AL+L
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 34  KALEL-DPNNAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 88  YKQGDYDEAIEYYQK 102

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA     + Y+ A
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA----IEYYQKA 69

Query: 134 L 134
           L
Sbjct: 70  L 70

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 27/139 (19%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
            ++A    + G   +K KDF  A       ++LD  N + Y           ++ +  + 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA+++ R     +                           K  +KA    G       
Sbjct: 65  CEKAVEVGRETRADY---------------------------KLIAKAMSRAGNAFQKQN 97

Query: 600 QHKKAIKDLSSGLGIDPSN 618
               A++     L      
Sbjct: 98  DLSLAVQWFHRSLSEFRDP 116

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +   A  A K  G A     +  +A     KA+E +P++    + +  V F+ K F   V
Sbjct: 3   AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 504 EDLSACVKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           +     V++ +E ++       A +  G A     +   A +   +++   R+
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +  +  A   +D+ ++ DP        +      +++    +    +A++   
Sbjct: 14  LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73

Query: 447 SA-------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
                     +A  R G A     +   A+Q   ++L    +
Sbjct: 74  ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 8/91 (8%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------E 620
           EKA     + + +D      Y+ +  +     +  + ++     + +            +
Sbjct: 25  EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLELD 651
            +    + +    +   A++ +  +L    D
Sbjct: 85  AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------A 105
            KAI  LD      Y      N+A  Y + +     ++ C+KA+++             A
Sbjct: 32  DKAIE-LDPSNITFY-----NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFL-ELE 147
               G AF        A+  + +       +  +L + + ELE
Sbjct: 86  MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVKELE 126

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 16/85 (18%), Positives = 34/85 (40%)

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
           A    G   +     +KA       + +DPSNI     +A+ Y    ++ E ++  + A+
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69

Query: 647 DLELDSMEKFVLQCLAFYQKEIALY 671
           ++  ++   + L   A  +   A  
Sbjct: 70  EVGRETRADYKLIAKAMSRAGNAFQ 94

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
              K+  N A + K F    +   K+I +D     F  ++      E K+A  +   ++ 
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 408 LKEDP-------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           ++          +  +A+   G A   Q +L  A+  F  ++      
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 83.7 bits (207), Expect = 4e-17
 Identities = 36/283 (12%), Positives = 83/283 (29%), Gaps = 40/283 (14%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG+ ++++ +Y SAI  F +                            + D  E  + 
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAES---------------------KLIFVKDRIEKAEF 145

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                E++    Q   ++  + +A +   +   +                  K +  A+ 
Sbjct: 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205

Query: 505 DLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLE 552
                  + +  K           +GL  +S  +Y+ A     +AI +        +  +
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSG 611
           A+  +TQ +  L   +KA E   + +   ++     Y      L  L       + +   
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325

Query: 612 L------GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                   +     +     A  YH    +++A   +     +
Sbjct: 326 FDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 80.3 bits (198), Expect = 5e-16
 Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 31/224 (13%)

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHE------RGIVNFKFKDFNAAVE----- 504
                   E    + DL   ++ +      L E      RG+     +++ +A++     
Sbjct: 70  EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA 129

Query: 505 -DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGH 556
                 VK   E    +  +  +   + +   + +   +A ++ +          +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSS 610
               + DL   E A+   Q+   + +         +  +  GL  +   Q++ AI     
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249

Query: 611 GLGID------PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            + +       PS  +  +L    ++ +G+  +A + +   +  
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
               ++  +Y  AIS F +         +  +    L   G  +  Q + E AI  F  A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 442 IQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--------FEPNSADILH 487
           I         PS  +A+    Q    LG+  +A +  SK +            +  + L 
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
              +     +      + L +   L  + +     +         ++KA    LK  Q+ 
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

Query: 548 RNFLE 552
           +    
Sbjct: 370 QLIQG 374

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 531 GEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           G   +A   + KAI      ++  E +  L   ++ L    KA   L   +         
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
                ++L+ LG++++ ++ L   +     +             I  Y++AI  Y   LD
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDD-----------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 568 EKALECLQQVLYI---DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            +A+   ++ +      K  ++ Y   G     LG+++KA   L++G+   P++      
Sbjct: 7   AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
            A   + +G Y + ++     +    D         +  Y++ I  Y
Sbjct: 67  YAMVLYNLGRYEQGVELLLKIIAETSDDET------IQSYKQAILFY 107

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 395 GKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           G  A A+  +++ +    +     E  +G G+      E   A +     ++  P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADIL-HERGI 491
                     LG   + ++ L K +    +   I  +++ I
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 430 ELEAAISDFTEAIQ---SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
               A+  + +AI          E +   G     LGE  +A   L+  ++  PN   + 
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
               +V +    +   VE L   +    +++           +I  YK+A   +     L
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYADK--L 111

Query: 547 DRNF 550
           D  +
Sbjct: 112 DETW 115

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G      G+Y  A ++    +K+ P +    +            E  +    + I  
Sbjct: 31  LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                                 E IQ   +A+ F  +  D
Sbjct: 91  TSDD------------------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 54  KAIRI--LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           KAI        LA+ Y           +  L  ++         ++  P      +    
Sbjct: 15  KAIASGLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69

Query: 112 AFSALGRKEEALSVWEK 128
               LGR E+ + +  K
Sbjct: 70  VLYNLGRYEQGVELLLK 86

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 78.3 bits (193), Expect = 4e-17
 Identities = 19/122 (15%), Positives = 37/122 (30%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516
               A+ +++ +   L        +  D ++      +       A          D  N
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
                 L        ++++A + +  A  L +N      H  Q    L    KA EC + 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 577 VL 578
           V+
Sbjct: 130 VI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 76.0 bits (187), Expect = 3e-16
 Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           EN+S  T +  A++S    K           +  + ++        + +    E+A    
Sbjct: 7   ENESISTAVIDAINSGATLKDI-------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFF 59

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           + +   D            +     Q ++A    +    +  ++   ++    C   +  
Sbjct: 60  RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119

Query: 635 YREAIKDYDAALDLELDS 652
             +A + ++  +    D 
Sbjct: 120 PLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 2/135 (1%)

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              D   +   L     +  +             + G  ++AE         D   ++  
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
             L   YQ     ++A +       + K         G     L    KA +     +  
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 615 DPSNIECLYLRASCY 629
                E L ++A  Y
Sbjct: 134 SND--EKLKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 13/98 (13%), Positives = 31/98 (31%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S      N+G+   A   F  +   D    + ++G       + + + A   +  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            +        GQ +  L   ++A +     ++   +  
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 12/112 (10%), Positives = 26/112 (23%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
            I        + +         +  +E A   F      +    +             + 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
            +A    + A     N    +   G    + K    A E     ++   + K
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 14/110 (12%), Positives = 30/110 (27%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +         +            G   EA         ++  + D +     +    + F
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             A +  +    L K + +   + G     +    KA+E     IQ   +
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 5/110 (4%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +     +A      L     Y +  I   A  Y   E  +        A  L      
Sbjct: 46  FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK 154
                G     L    +A     + +E  +  S D K  ++ +  L A +
Sbjct: 106 PVFHTGQCQLRLKAPLKAK----ECFELVIQHSNDEKLKIKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +VD+ +        + ++  A  ++             +   G  +   +    A   F 
Sbjct: 69  NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128

Query: 440 EAIQSNPSAGEAWKRRGQA 458
             IQ +    E  K + Q+
Sbjct: 129 LVIQHSN--DEKLKIKAQS 145

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 76.9 bits (190), Expect = 9e-17
 Identities = 21/102 (20%), Positives = 43/102 (42%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G Y  A+  + + +K +P   +    R        E + A+ D  E IQ  P
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
           +  + + R+  A  A+ +  +A+    KAL+ + +  +    
Sbjct: 82  TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
                    NP      K +G      G+  +A++  ++A++  P  A +   R     K
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
             +F  A++D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 63  LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 74.2 bits (183), Expect = 7e-16
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 34/159 (21%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
                  P+ A ++  +G   F+  D+  A++  +  +K + ++   Y+      + + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           ++ A +   + IQL+                                    F K Y  + 
Sbjct: 66  FQLALKDCEECIQLEPT----------------------------------FIKGYTRKA 91

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
             L  +  + KA+      L +D S  E       C  A
Sbjct: 92  AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++AI+  +   A+ Y      NRA CY++L   +  ++DC++ +QL+PT ++ Y  K  A
Sbjct: 40  TEAIK-RNPKDAKLY-----SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93

Query: 113 FSALGRKEEALSVWEKGYEH 132
             A+    +A+ V++K  + 
Sbjct: 94  LEAMKDYTKAMDVYQKALDL 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 66.5 bits (163), Expect = 4e-13
 Identities = 23/119 (19%), Positives = 43/119 (36%)

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                 +P     +  +G     + +   A+  +TEAI+ NP   + +  R      L E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
              A++D  + ++ EP        +       KD+  A++     + LD   K A    
Sbjct: 66  FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 19/82 (23%), Positives = 42/82 (51%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A++   + +  + + +K Y  R      L + + A+KD    + ++P+ I+    +A+
Sbjct: 33  PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              A+ +Y +A+  Y  ALDL+
Sbjct: 93  ALEAMKDYTKAMDVYQKALDLD 114

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 14/74 (18%), Positives = 34/74 (45%)

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
               +++   +     +G      G + +A+K  +  +  +P + +    RA+CY  + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 635 YREAIKDYDAALDL 648
           ++ A+KD +  + L
Sbjct: 66  FQLALKDCEECIQL 79

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 15/115 (13%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 353 DMLKETSNEAKRNKKFCVTRISK-SKSISVD-----FRLSRGIAQVNEGKYASAISIFDQ 406
            M+K   NE  +   +    +   +++I  +        +R        ++  A+   ++
Sbjct: 17  LMVKNKGNECFQKGDY-PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 407 ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461
            ++ +P + +    +  A    ++   A+  + +A+  + S  EA     +   A
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G A +   +Y+ AI ++ Q L   P  P  L  R  A +   + E A  D   A   +
Sbjct: 16  SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI--VNFKFKDFNAAV 503
           P   +AW R G AR  + +   A +   K +E E N      +RG+     K ++ N   
Sbjct: 76  PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135

Query: 504 E 504
           E
Sbjct: 136 E 136

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 72.8 bits (179), Expect = 5e-15
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +     +  K  G A  A  E  +AI   ++AL   P +   L  R            A 
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           ED      +D +   A++ LGLA   + +YK A+EA+ K I+ + N            + 
Sbjct: 66  EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD-----AMKRG 120

Query: 564 LANSEKALE 572
           L  +++ +E
Sbjct: 121 LETTKRKIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 39/177 (22%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
               +D L   G      K+++ A++  +  + +   N    +    A S+ G+++KA E
Sbjct: 7   PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE 66

Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
               A  +D  +                                  SKA+   GL    +
Sbjct: 67  DAELATVVDPKY----------------------------------SKAWSRLGLARFDM 92

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK 655
             +K A +    G+  + +       R      +   +  I++ +   +   D ++ 
Sbjct: 93  ADYKGAKEAYEKGIEAEGNGGSDAMKR-----GLETTKRKIEEANRGAEPPADDVDD 144

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++A+  +              NRA  YS    H+    D + A  +DP   +A+   G A
Sbjct: 35  TQALS-IAPANPIYL-----SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88

Query: 113 FSALGRKEEALSVWEKGYEHA-LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSS 171
              +   + A   +EKG E      S  +K+ LE  +         +     DV ++  +
Sbjct: 89  RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGA 148

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           ++E   AI  +T+A+   P+       R  A +A G+  +A +D   A   +P  +    
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL--ALSSIGEYKKAEEA 539
             G+  F   D+  A E     ++ +    S     GL      I E  +  E 
Sbjct: 84  RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEP 137

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 63.6 bits (155), Expect = 8e-12
 Identities = 20/102 (19%), Positives = 39/102 (38%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            KA++   Q L I          R       GQH+KA +D      +DP   +       
Sbjct: 28  SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669
               + +Y+ A + Y+  ++ E +     + + L   +++I 
Sbjct: 88  ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
                 S      G       ++ KAI   +  L I P+N   L  RA+ Y A G++ +A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 639 IKDYDAALDL 648
            +D + A  +
Sbjct: 65  AEDAELATVV 74

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++ I+      A+ Y      NRA   ++L      I DC+KA++ DP  ++AYI K  A
Sbjct: 28  TEMIK-RAPEDARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157
             A+     AL   +        +  +     E+++L   A Q R
Sbjct: 82  QIAVKEYASALETLDAARTKDA-EVNNGSSAREIDQLYYKASQQR 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 73.8 bits (182), Expect = 9e-16
 Identities = 24/111 (21%), Positives = 46/111 (41%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  + +++K  P        R  A A       AI+D  +AI+ +P
Sbjct: 10  EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
           +   A+ R+  A+ A+ E   A++ L  A   +    +    R I    +K
Sbjct: 70  NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 20/104 (19%), Positives = 35/104 (33%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  +  G+      +   A++  ++ ++  P  A     R     K   F  A+ D +  
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++ D     AY     A  ++ EY  A E    A   D      
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 25/112 (22%), Positives = 42/112 (37%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
            A+     G   F   D+  AV+  +  +K   E+   Y+    AL+ +  + +A     
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593
           KAI+ D NF+ A+         +     ALE L      D   +     R +
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +TE I+  P     +  R  A A L    EAI D +KA+E +PN       +  
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                K++ +A+E L A    D E  +  +   +       Y KA + 
Sbjct: 81  AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ----LYYKASQQ 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 18/102 (17%), Positives = 41/102 (40%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A++   +++      ++ Y  R   L  L    +AI D +  +  DP+ +     +A+
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669
              A+ EY  A++  DAA   + +       + +     + +
Sbjct: 81  AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 27/136 (19%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A    E G   +K KDF+ A++      +LD  N +  T         G+Y K  E   K
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI++ R   E +                           ++ +KAY   G       ++K
Sbjct: 64  AIEVGRENREDY---------------------------RQIAKAYARIGNSYFKEEKYK 96

Query: 603 KAIKDLSSGLGIDPSN 618
            AI   +  L    + 
Sbjct: 97  DAIHFYNKSLAEHRTP 112

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+        AY  +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  +D+  + DP     +  +      + +         +AI+   
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 447 SAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
              E       A+ R G +     +  +AI   +K+L       
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 18/113 (15%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------A 105
            KA   LD             N+A  Y +   +      C+KA+++     +       A
Sbjct: 28  DKAKE-LDPTNMTYI-----TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHALHQSAD-LKQFLELEELLTAAKQDR 157
           Y   G ++    + ++A+  + K      H++ D LK+  + E++L   +Q+R
Sbjct: 82  YARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL--KEQER 130

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 7/89 (7%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------- 620
           + AL+   +   +D         +  +    G + K  +     + +   N E       
Sbjct: 21  DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80

Query: 621 CLYLRASCYHAIGEYREAIKDYDAALDLE 649
                 + Y    +Y++AI  Y+ +L   
Sbjct: 81  AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 12/73 (16%), Positives = 33/73 (45%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
                A+K       +DP+N+  +  +A+ Y   G+Y +  +  + A+++  ++ E +  
Sbjct: 18  KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77

Query: 659 QCLAFYQKEIALY 671
              A+ +   + +
Sbjct: 78  IAKAYARIGNSYF 90

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 75.0 bits (185), Expect = 5e-16
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 33  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKR 129

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 18/102 (17%), Positives = 39/102 (38%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +A    GQ +  +    EAI +L +A            +
Sbjct: 75  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 20/109 (18%), Positives = 39/109 (35%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
                  + +  K +G       +  EA     +A+   P  A     R +   K +   
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            A+ D    ++LD ++  A+ +LG     +  Y +A     +A  L + 
Sbjct: 61  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 1/115 (0%)

Query: 425 RAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           R F  R+   A + +  AI  NP     +  R      + +  +A+ D  +ALE +  S 
Sbjct: 18  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
                 G    + + ++ A+ +L     L KE +  +     +   I + K+   
Sbjct: 78  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 34/144 (23%)

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
               +  SA  L E+G   F  + +  A       +  +      YT   L    + + +
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +A     +A++LD                                      KA+   G  
Sbjct: 61  QALADCRRALELDGQ----------------------------------SVKAHFFLGQC 86

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSN 618
              +  + +AI +L     +    
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQ 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 17/82 (20%), Positives = 33/82 (40%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 26  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
           C   +  Y EAI +   A  L 
Sbjct: 86  CQLEMESYDEAIANLQRAYSLA 107

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 16/86 (18%), Positives = 28/86 (32%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459
                + +L +           G   A   + +AA+     A+  +P+   AWK  G+  
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 460 AALGESVEAIQDLSKALEFEPNSADI 485
              G+   A Q     L    +  D 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
              + L   L    ++  +    G    + + F+AA+  L A +  D     A+ +LG  
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDL 564
           L   G+   A +A    +   ++    +    L  F + L
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
            A  E L A +    +N      LG   +   ++  A      A+  D  +  AW  L +
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 560 FYQDLANSEKALECLQQVLYIDKR 583
             Q   +   A +  +  L   + 
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 13/82 (15%), Positives = 24/82 (29%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           +   E L+ +L             G       Q   A+  L + L  DP+          
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
                G+   A + +++ L   
Sbjct: 62  TLQGQGDRAGARQAWESGLAAA 83

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 8/114 (7%)

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
             E     +    + +     L + Y +    + AL  L+  L  D  +S A+   G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            G G    A +   SGL    S  +           + E +  ++       LE
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGD--------QQVVKELQVFLRRLAREDALE 109

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
                Y++ E     +     AL  DPT   A+   G      G +  A   WE G   A
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 134 LHQSADLKQFLELEELLTAAKQDRSV 159
                D +   EL+  L    ++ ++
Sbjct: 84  -QSRGDQQVVKELQVFLRRLAREDAL 108

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 2/93 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++  R + G       ++ +A+      L  DP Y  A    G     Q +   A   + 
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 440 EAIQSNPSAG--EAWKRRGQARAALGESVEAIQ 470
             + +  S G  +  K        L        
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALEH 110

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 78.4 bits (193), Expect = 6e-16
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 28  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R  + E    +  S L
Sbjct: 82  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKRWNSIEERRIHQESEL 139

Query: 173 TVSESGLNANDKMSETSENHNKSD 196
               + L A ++  E  E     +
Sbjct: 140 HSYLTRLIAAERERELEECQRNHE 163

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 2/189 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G       KY  A + + + +  +P+       R       ++ E A++D   A++ +
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
             + +A    GQ +  +    EAI +L +A            +      +          
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128

Query: 506 LSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +  + E  S  T L  A     + E ++  E H     +            ++  D
Sbjct: 129 EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188

Query: 564 LANSEKALE 572
           +      ++
Sbjct: 189 MDELFSQVD 197

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 18/89 (20%), Positives = 35/89 (39%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 21  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEKF 656
           C   +  Y EAI +   A  L  +    F
Sbjct: 81  CQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 21/101 (20%), Positives = 43/101 (42%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA  L E+G   F  + +  A       +  +      YT   L    + + ++A     
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           +A++LD   ++A   L Q   ++ + ++A+  LQ+   + K
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
            ++ +A       +  +P        RA CY  + +  +A+ D   AL+L
Sbjct: 18  RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 76.1 bits (187), Expect = 6e-16
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 3/137 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           +         A Q+  EA +    + I++NP   E W   G+      +   ++    +A
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 476 LEFEPNSADILHERGIVNF---KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           L+    +A++      V +              +   + LD    +A   L         
Sbjct: 71  LQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130

Query: 533 YKKAEEAHLKAIQLDRN 549
           Y +A E   K + L+  
Sbjct: 131 YAQAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 72.6 bits (178), Expect = 9e-15
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 7/153 (4%)

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
            ++  A ++ L   ++ + +N   +  LG       +Y  +  A+ +A+QL     E + 
Sbjct: 23  QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82

Query: 556 HLTQFY---QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            L            + +    + + L +D     A  L          + +AI+     +
Sbjct: 83  ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
            ++   I     R     +I   +   +  D  
Sbjct: 143 DLNSPRIN----RTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 69.9 bits (171), Expect = 8e-14
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
              ++    + +      ++ +P   E     G    +Q +   ++  + +A+Q      
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 450 EAWKRRGQARAALGE---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           E +               + +    + KAL  + N    L       F   ++  A+E  
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 507 SACVKLDKENKSAYTYL 523
              + L+    +    +
Sbjct: 139 QKVMDLNSPRINRTQLV 155

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 66.8 bits (163), Expect = 9e-13
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
             +S    +   +A    I+ +    E W  L ++Y    +   +L   +Q L +    +
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 586 KAYHLRGLLLHGLGQHK---KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           + Y     +L+         +    +   L +D + I  L L AS       Y +AI+ +
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 643 DAALDL 648
              +DL
Sbjct: 139 QKVMDL 144

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQS 444
           G   + +  Y++++  + Q L+      E      T   +   Q       +   +A+  
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           + +   A               +AI+   K ++      +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           Q  R   +        +    N E  L+ LQ  +  + + S+ + L G        +  +
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYR---EAIKDYDAALDLE 649
           +      L +   N E     A+  +         +     D AL L+
Sbjct: 64  LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD 111

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
             Q ++   A   ++ D+ L  D     AL+   +    Q     AI  + + +  N   
Sbjct: 89  YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP- 147

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                     R  L ES+   + L +  + E
Sbjct: 148 -------RINRTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVL 658
              +  ++ L   +  +P N E   L    Y    +Y  ++  Y  AL L  ++ E  + 
Sbjct: 24  QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE--LY 81

Query: 659 QCLAFYQKEIALYTASK 675
             LA       LY  + 
Sbjct: 82  AALA-----TVLYYQAS 93

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 21/100 (21%), Positives = 41/100 (41%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   
Sbjct: 9   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           P  G+ + R+  A   L    EA +   + L+ E N+  +
Sbjct: 69  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 68.0 bits (167), Expect = 9e-14
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI+ LD      Y      NR+  Y++   ++    D  K + L P   + Y  K  A
Sbjct: 28  SEAIK-LDPHNHVLY-----SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
              L R EEA   +E+G +H
Sbjct: 82  LEFLNRFEEAKRTYEEGLKH 101

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 20/98 (20%), Positives = 45/98 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           V L  +    Y+    AL  +  +++A+  + + ++ +
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            + L E+G       + + A++  S  +KLD  N   Y+    A +  G+Y+KA E   K
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
            + L  +                                  + K Y  +   L  L + +
Sbjct: 64  TVDLKPD----------------------------------WGKGYSRKAAALEFLNRFE 89

Query: 603 KAIKDLSSGLGIDPSNIEC 621
           +A +    GL  + +N + 
Sbjct: 90  EAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 426 AFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           A     ++ A+  ++EAI+ +P     +  R  A A  G+  +A +D  K ++ +P+   
Sbjct: 14  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
               +         F  A       +K +  N      L
Sbjct: 74  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 17/82 (20%), Positives = 34/82 (41%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           + AL+C  + + +D      Y  R       G ++KA +D    + + P   +    +A+
Sbjct: 21  DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
               +  + EA + Y+  L  E
Sbjct: 81  ALEFLNRFEEAKRTYEEGLKHE 102

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 71.5 bits (176), Expect = 5e-15
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 374 SKSKSISVDFRL-----SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
           S ++   ++  L     ++G     +G Y +A+  +++ +K DP        R       
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            E + A+ D    I+ +    + + R+     A+ E  +A +    AL+ +P++ +    
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           ++     P  A     +G   FK  D+  A+   +  VK D EN   Y+     L+ + E
Sbjct: 3   ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           +++A +     I+LD                                    F K Y  + 
Sbjct: 63  FQRALDDCDTCIRLDSK----------------------------------FIKGYIRKA 88

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             L  + +  KA +     L +DPSN E 
Sbjct: 89  ACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 68.0 bits (167), Expect = 8e-14
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C ++L   +  + DCD  ++LD   ++ YI K     A+    +A   +E   + 
Sbjct: 51  SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 13/88 (14%), Positives = 31/88 (35%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + EA++ +P     +  R      L E   A+ D    +  +         +  
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSA 519
                ++++ A       +++D  N+ A
Sbjct: 90  CLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 18/82 (21%), Positives = 39/82 (47%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A+    + +  D   +  Y  R   L  L + ++A+ D  + + +D   I+    +A+
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
           C  A+ E+ +A + Y+ AL ++
Sbjct: 90  CLVAMREWSKAQRAYEDALQVD 111

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 73.0 bits (180), Expect = 5e-15
 Identities = 27/149 (18%), Positives = 60/149 (40%), Gaps = 18/149 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A+  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 572 ECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI 619
           E  ++ L + ++       +++ +  G     L  ++KAI        ++  L       
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
              +   + Y A+G + +A+   +  L++
Sbjct: 130 RACWSLGNAYTALGNHDQAMHFAEKHLEI 158

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 54.8 bits (133), Expect = 9e-09
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 454 RRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD 498
           R  Q RA          LG   +A+    + L        +          G       +
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           F  A E     + L ++ K       +   LG   + + +Y+KA + HLK + + +   +
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 553 ------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
                 A   L   Y  L N ++A+   ++ L I + 
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 24/148 (16%)

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
           G           A+    + +      G+   +  +  A          LGE   A +  
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYY 72

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            K L            A   +  G      +D+  A++     + + +E K       A 
Sbjct: 73  KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 132

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDR 548
             LG A +++G + +A     K +++ R
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI  L+   A  Y      NR+  Y + E + + + D  +A++LD   ++ Y  +  +
Sbjct: 37  SQAIE-LNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
             ALG+   AL  +E   +   H      ++ E  +++     +R++  +    + + SL
Sbjct: 91  NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150

Query: 173 TVSESGLNANDK 184
            +    +     
Sbjct: 151 DIESMTIEDEYS 162

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +         Y +AI  + Q ++ +P        R  A         A+ D T AI+ + 
Sbjct: 19  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVE 504
              + + RR  +  ALG+   A++D    ++ +P+  D   +    N   K   F  A+ 
Sbjct: 79  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138

Query: 505 D 505
            
Sbjct: 139 G 139

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 66.6 bits (163), Expect = 8e-13
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
            R   N     F AA+ D    VK+   +K A                 ++A  +AI  D
Sbjct: 86  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-----NKIVKQKAFERAIAGD 140

Query: 548 RN 549
            +
Sbjct: 141 EH 142

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 36/165 (21%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI+LD+ +                                   K Y+ R      LG+ +
Sbjct: 73  AIELDKKY----------------------------------IKGYYRRAASNMALGKFR 98

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE--YREAIKDYDAA 645
            A++D  + + + P + +       C   + +  +  AI   +  
Sbjct: 99  AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 18/100 (18%), Positives = 45/100 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 19/82 (23%), Positives = 41/82 (50%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A++   Q + ++   +  Y  R L       +  A+ D +  + +D   I+  Y RA+
Sbjct: 30  ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89

Query: 628 CYHAIGEYREAIKDYDAALDLE 649
              A+G++R A++DY+  + ++
Sbjct: 90  SNMALGKFRAALRDYETVVKVK 111

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 3e-14
 Identities = 114/716 (15%), Positives = 204/716 (28%), Gaps = 258/716 (36%)

Query: 65  QSYEIQDICN---RAF-----CYSQLELHKHVI--RDCDKALQLDPTLLQAYILKGCAFS 114
             Y+ +DI +    AF     C    ++ K ++   + D  +     +     L    F 
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FW 69

Query: 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTV 174
            L  K+E +                +++F+E        + +      Y     MS +  
Sbjct: 70  TLLSKQEEM----------------VQKFVE-----EVLRIN------YKFL--MSPIK- 99

Query: 175 SESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSV 234
                         +E    S +     + RD             L N     AK   +V
Sbjct: 100 --------------TEQRQPSMMTRMYIEQRDR------------LYNDNQVFAKY--NV 131

Query: 235 PVSKSGLHINGKLREVSENHN-------GSSDGSKSTHASRDASEINRQSSDDFDI---- 283
              +  L +   L E+    N       GS  G K+  A         Q   DF I    
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGS--G-KTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 284 ---CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSD 340
              CN P                   V + L      + D N  S S   S+I     S 
Sbjct: 189 LKNCNSP-----------------ETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSI 230

Query: 341 STESRSKLSFK------------WDMLKETSNEAKRNKKF---C---VTRISKSKSISVD 382
             E R  L  K             +        AK    F   C   +T  ++ K +  D
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--------AKAWNAFNLSCKILLT--TRFKQV-TD 279

Query: 383 FRLSRGIAQVNEGKYAS------AISIFDQILKEDP-MYPEALIGRGTARAFQRELEA-- 433
           F  +     ++   ++         S+  + L   P   P                E   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---------------EVLT 324

Query: 434 ----AISDFTEAIQSNPSAGEAWKRRGQAR--AALGESVEAI-----QDLSKALEFEPNS 482
                +S   E+I+   +  + WK     +    +  S+  +     + +   L   P S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 483 ADI----LHERGIV--NFKFKDFNAAVED-LSACVK---LDKENK-SAYTYLGLALSSIG 531
           A I    L    ++  +    D    V   ++   K   ++K+ K S  +   + L    
Sbjct: 385 AHIPTILL---SLIWFDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 532 EYKKAEEAHLKAI---QLDRNFLEAWGHLTQFYQD----------LANSEKALE-CLQQV 577
           + +     H   +    + + F      L   Y D          L N E      L ++
Sbjct: 438 KLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 578 LYIDKRF--------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           +++D RF        S A++  G +L+ L Q K                           
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-------------------------- 529

Query: 630 HAIGEYREAIKDYDAALDLELDSMEKFVLQC--------------LAFYQKEIALY 671
                Y+  I D D   +  ++++  F+ +               +A   ++ A++
Sbjct: 530 -----YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 3e-07
 Identities = 60/438 (13%), Positives = 134/438 (30%), Gaps = 106/438 (24%)

Query: 679  EFCWFDIDGDIDPLF-KEYWCKRL--HPKNV-----CEKVYRQPPLRDSLKK--GKLRRQ 728
            ++ + DI    +  F   + CK +   PK++      + +           +    L  +
Sbjct: 15   QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 729  DFSVTKQKTALLLVADSIGKKIQYDCPGFLSN--RRQHRMAGLAAIEIAQKVSKIWRSLQ 786
               + ++      V + +  +I Y    FL +  + + R   +      ++  +++   Q
Sbjct: 75   QEEMVQK-----FVEEVL--RINYK---FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 787  AEWKYS-NRSSSKNG-KRARRKDR--INIASQNRGGAGCSTSSSSDTSSYGITEERSSGH 842
               KY+ +R       ++A  + R   N+      G+G +  +     SY +  +     
Sbjct: 125  VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK- 183

Query: 843  PKMSWQDVYTLAVKWRQISEPCDPVVWVNKLSEEFNSGF------GSHTPMILGQAK--V 894
              + W       +  +  + P   +  + KL  + +  +       S+  + +   +  +
Sbjct: 184  --IFW-------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 895  VRYF--PNYARTL----DV------------AKTVM--KDK---------KYVHNKADDI 925
             R      Y   L    +V             K ++  + K            H   D  
Sbjct: 235  RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 926  ID-LSEDVVGEDFWLATWCNSTAFE-GKQLEGTRITLVKM-GESGYDFAIRTPCTPSRWD 982
               L+ D   +   L  + +    +  +++  T    + +  ES  D         + WD
Sbjct: 295  SMTLTPDE-VKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-------LATWD 345

Query: 983  EFD----AEMTMAWEVDWEAILNSD---PHF-----FLDSVKSWLYPSLKTSTSWKEYPD 1030
             +      ++T   E      L        F     F  S      P++  S  W +   
Sbjct: 346  NWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFD--- 398

Query: 1031 VTSTFATTGSVVAALSSY 1048
                 +    VV  L  Y
Sbjct: 399  --VIKSDVMVVVNKLHKY 414

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 3e-05
 Identities = 67/494 (13%), Positives = 135/494 (27%), Gaps = 172/494 (34%)

Query: 476 LEFEPNSADILHERGIV-----NFKFKDFNAA-VEDLSACVKLDKE---------NKSAY 520
           ++FE         + I+      F   +F+   V+D+   +   +E           S  
Sbjct: 7   MDFETGEHQ-YQYKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 521 TYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
             L   L S  E   +K  E  L   +++  FL     +    +  +   +     +  L
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVL---RINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 579 YID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
           Y D + F+K Y++                                  R   Y  +   R+
Sbjct: 120 YNDNQVFAK-YNVS---------------------------------RLQPYLKL---RQ 142

Query: 638 AIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFC----WFDI------DG 687
           A+ +   A ++ +D +       +A     + +  + K+  +      W ++      + 
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 688 DIDPLFKEYWCKRLHPKNVCEKVYRQPPLRDSLKKGKLRRQDFSVTKQKTALLLVADSIG 747
            ++ L  +    ++ P N   +      ++  +   +   +    +K     LLV  ++ 
Sbjct: 198 VLEML--QKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV- 253

Query: 748 KKIQYDCPGFLSNRRQHRMAGLAAIEIAQKVSKIWRSLQAEWKYSNRSSSKNGKRARRKD 807
                +                         +K W +                       
Sbjct: 254 ----QN-------------------------AKAWNAF---------------------- 262

Query: 808 RINIASQNRGGAGCST------SSSSDTSSYGITEERSSGHPKMSWQDVYTLAV--KWRQ 859
             N+         C           +D  S   T   S  H  M+       ++  K+  
Sbjct: 263 --NL--------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 860 ISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQ-AKVVRYFPNYARTLDVAKTVMKDKKYV 918
                        L  E  +      P  L   A+ +R       T D  K V  DK   
Sbjct: 313 CR--------PQDLPREVLTT----NPRRLSIIAESIRDGLA---TWDNWKHVNCDKL-- 355

Query: 919 HNKADDIIDLSEDV 932
                 II+ S +V
Sbjct: 356 ----TTIIESSLNV 365

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 53  SKAIRILDSLLAQS--YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110
           ++A+ +  +   Q+  +      NRA C+ +LE +     +  KA++ D   ++A   + 
Sbjct: 52  TQALGLDATPQDQAVLH-----RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106

Query: 111 CAFSALGRKEEALSVWEKGYEH 132
            A   LGR ++A+   ++    
Sbjct: 107 QALEKLGRLDQAVLDLQRCVSL 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQ 443
            G      G Y  A++ + Q L  D    +  +    R        + + A ++ ++AI+
Sbjct: 34  EGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            +    +A  RR QA   LG   +A+ DL + +  EP +      
Sbjct: 94  KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 428 QRELEAAISDFTEAIQSNPSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
             +   A++ +T+A+  + +  +     + R      L +  +A  + SKA+E +     
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519
            L+ R     K    + AV DL  CV L+ +NK  
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG---LALSSI 530
           +      +S + L + G   FK  D+  A+   +  + LD   +               +
Sbjct: 19  RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y KAE    KAI+ D                                      KA + 
Sbjct: 79  EDYDKAETEASKAIEKDGGD----------------------------------VKALYR 104

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
           R   L  LG+  +A+ DL   + ++P N   
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L  + KA  + S  +  D  +++ LY R+     +G   +A+ D    + LE
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIEC--LYL-RASCYHAIGEYREAIKDYDAALDLE 649
           G +  A+   +  LG+D +  +   L+  RA+C+  + +Y +A  +   A++ +
Sbjct: 42  GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 19/150 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A   LG   + +  + +A  +     Q  +   +      A   +    +   N + A 
Sbjct: 27  GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86

Query: 572 ECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI 619
            C  +   +           S   +    +    G    A ++    L       D   I
Sbjct: 87  RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146

Query: 620 ECLYLR-ASCYHAIGEYREAIKDYDAALDL 648
            C +              EA + +  A D+
Sbjct: 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 14/136 (10%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF- 584
           A  +        +A    +        A   L   Y  +   ++A    Q +    ++  
Sbjct: 2   AFEAHDYALAERQAQ-ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 585 -----SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI-ECLYLRASCYHAI 632
                 +A H  G++    G    A +      +L + L  DP       Y  A+     
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120

Query: 633 GEYREAIKDYDAALDL 648
           G+   A ++Y+ +L  
Sbjct: 121 GDLAGARQEYEKSLVY 136

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 25/176 (14%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             YA A      +L        A    G   AF    + A + F    Q    +G+    
Sbjct: 6   HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---H 62

Query: 455 RGQARA---------ALGESVEAIQDLSKALEF-------EPNSADILHERGIVNFKFKD 498
             + RA           G    A +   +  E           ++   +E   V   F D
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              A ++    +   ++         A+  LG          +A++  L+A  +  
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 21/228 (9%), Positives = 50/228 (21%), Gaps = 71/228 (31%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G       ++  A + F  +                            +   +    + +
Sbjct: 33  GYVYAFMDRFDEARASFQALQ-------------------------QQA---QKSGDHTA 64

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
              A  + G      G    A +   +  E       +L                     
Sbjct: 65  EHRALHQVGMVERMAGNWDAARRCFLEERE-------LLASLP----------------- 100

Query: 508 ACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQ 559
                +    ++     +       G+   A + + K++   +   +      A+  L  
Sbjct: 101 -----EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155

Query: 560 FYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQH 601
             Q   N  +A +   +   I          ++       L H    H
Sbjct: 156 LAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 69.7 bits (170), Expect = 1e-12
 Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 16/176 (9%)

Query: 504 EDLSACVKLDKENKSAYTYLGLAL-----SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
                  K+     +  T    A             +A E   + +Q    F  A     
Sbjct: 181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKA 240

Query: 559 QFYQ--------DLANSEKALECLQQVLYID--KRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                       D          +  ++ +      S  Y ++ +     G+  ++ + +
Sbjct: 241 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAI 300

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFY 664
           ++G+ ++ S +    L    Y   G  REA   Y  A +L   +   + ++   F 
Sbjct: 301 NTGIDLEMSWLN-YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQ 355

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 64.7 bits (157), Expect = 5e-11
 Identities = 26/189 (13%), Positives = 55/189 (29%), Gaps = 17/189 (8%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGEAWKR 454
              + + + K  P     L     A  +      + L  A     E +QS+P    A   
Sbjct: 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE 238

Query: 455 RGQARAAL--------GESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVE 504
           +                +      ++   +      N + I   + +        + + +
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-WGHLTQFYQD 563
            ++  + L+  +   Y  LG      G  ++A +A+L A  L        W     F   
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357

Query: 564 LANSEKALE 572
           +      L+
Sbjct: 358 VPYVVPYLD 366

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 54.7 bits (131), Expect = 7e-08
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQI--LKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
             +      ++E + A+  +  D I  L E          +  +   + + + +      
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
            I    S    +   G+     G + EA      A    P +  +      +
Sbjct: 303 GIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.0 bits (98), Expect = 8e-04
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 30  DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV- 88
           +   A A  A +++ +        K +  L++ +     + ++ N +  Y    +   V 
Sbjct: 231 EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290

Query: 89  ------IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQ 142
                  +  +  + L+ + L  Y+L G  +   G   EA       Y  A +       
Sbjct: 291 GKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAA----DAYLTAFNLRPGANT 345

Query: 143 FLELEELL 150
              +E  +
Sbjct: 346 LYWIENGI 353

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 11/75 (14%), Positives = 28/75 (37%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
               L           +A     + ++ D +++  + HL + Y+ L  ++ A++   Q +
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

Query: 579 YIDKRFSKAYHLRGL 593
            + +       L  L
Sbjct: 69  EVAREEGTQKDLSEL 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           EDP  P                  A++ F E ++++P     +   G+    L  + +AI
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 470 QDLSKALEFEPNSAD 484
              ++ +E       
Sbjct: 62  DTYAQGIEVAREEGT 76

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
           +P      +     + K  + + A+      V+ D +    Y +LG     +     A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 539 AHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKA 570
            + + I++ R          L          E  
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                   L Q +    N+ +AL   ++++  D  +   Y+  G L   L +   AI   
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
           + G+ +                 + E ++A    +  
Sbjct: 65  AQGIEVAREEGTQ--------KDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A  + + +     +   ++ ++ DP  +  Y   G  +  L R ++A+  + +G E A
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
             +    K   EL++    A+ 
Sbjct: 72  -REEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 8/65 (12%), Positives = 18/65 (27%)

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
                +             +A+      +  DP  +   Y     Y  +    +AI  Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 644 AALDL 648
             +++
Sbjct: 66  QGIEV 70

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           +     +     + A+++F+++++ DP Y       G         + AI  + + I+  
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDL 472
              G       +  + L ++    + L
Sbjct: 72  REEGTQ-----KDLSELQDAKLKAEGL 93

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 69.2 bits (169), Expect = 2e-12
 Identities = 43/318 (13%), Positives = 92/318 (28%), Gaps = 41/318 (12%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARA 426
           +  +  ++  +F   R    +N+G    A  +    L+E P         A    G    
Sbjct: 5   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 64

Query: 427 FQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARAALGESVEAIQDLSKALE--- 477
            + EL  +++   +  Q             +  ++ +   A G    A +   KA +   
Sbjct: 65  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124

Query: 478 -----FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLGLALSS 529
                  P    ++  R  + + +   + A     + +++       +       L   S
Sbjct: 125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184

Query: 530 I--GEYKKAEEAHLKAIQLDRNFLEAWGHLT-------QFYQDLANSEKALECLQQVLYI 580
           +  G+   A     +   L  N       ++        ++Q   +   A   L+     
Sbjct: 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244

Query: 581 DKRFS----KAYHLRGLLLHGLGQHKKAIKDL------SSGLGIDPSNIECLYLRASCYH 630
           +   +      +         LG+ + A   L      +  L +       L L    Y 
Sbjct: 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304

Query: 631 AIGEYREAIKDYDAALDL 648
             G   +A +    AL L
Sbjct: 305 QAGRKSDAQRVLLDALKL 322

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 11/93 (11%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + I          Y      N+A    +L  +   I+ C + L+   T     I     
Sbjct: 28  DQLIT-AQPQNPVGY-----SNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145
           +  L   + A+       +  + +  +L +  +
Sbjct: 82  Y-RLELAQGAV----GSVQIPVVEVDELPEGYD 109

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           +  +   E+G   FK   +  AV      +    +N   Y+   +AL  +GEY +A +  
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
            + ++               Y+ L  ++ A+  +Q  +
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPV 98

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G +   +G Y  A+  +DQ++   P  P     +  A     E   AI    + ++   
Sbjct: 10  QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69

Query: 447 SAGEAWKRR------GQARAALGESVEAIQDLSKALE 477
           +A     R         A+ A+G     + ++ +  E
Sbjct: 70  TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +G +    G   EA+    + +  +P +      + +   K  ++  A++     
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           ++     +       L    +   + A  +    + 
Sbjct: 65  LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A+ C  Q++    +    Y  + + L  LG++ +AI+    GL    +      +R+ 
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 628 CYHAIGEYREAIKDYDAALDLELDSMEK 655
             + +   + A+      +  E+D + +
Sbjct: 80  LQYRLELAQGAVGSVQIPVV-EVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + + I + P     +  +  A   LGE  +AIQ   + L +   +  +   R  
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 492 VNFKFKDFNAAVEDL-SACVKLDKENKSA 519
           + ++ +    AV  +    V++D+  +  
Sbjct: 80  LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           G +++A+      +   P N      +A     +GEY +AI+     L   
Sbjct: 18  GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 37/259 (14%), Positives = 70/259 (27%), Gaps = 23/259 (8%)

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADILH 487
                ++  FTE    + SA +AW      R   G+     +           +  +   
Sbjct: 20  MSEARSLDLFTEITNYDESACDAW----IGRIRCGDTDRVTLFRAWY------SRRNFGQ 69

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---LGLALSSIGEYKKAEEAHLKAI 544
             G V       NA +        +     S            ++ G Y  A EA   A 
Sbjct: 70  LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHK 602
                 L AW     +          ++ ++       +F    A    G+    L    
Sbjct: 130 VAGSEHLVAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188

Query: 603 KAIKDLSSGLG---IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ 659
           +A + L+        +       +  A    + G    A+   +       +      L+
Sbjct: 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248

Query: 660 CLAFYQKEIALYTASKINS 678
             ++    +   TA +I S
Sbjct: 249 DPSY---RLKTTTAEQIAS 264

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 472 LSKALEFEPNSADILHERGIV 492
             KALE +PN+A+     G  
Sbjct: 66  YQKALELDPNNAEAKQNLGNA 86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 53.6 bits (130), Expect = 4e-09
 Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 34/115 (29%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                    A+  LG A    G+Y +A E + KA++LD N  EA  +L    Q  
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYD 643
            ++A++  G   +  G + +AI+     L +DP+N E  Y   + Y+  G+Y EAI+ Y 
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 644 AALDL 648
            AL+L
Sbjct: 68  KALEL 72

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 47.4 bits (114), Expect = 6e-07
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIG 633
              L +DP+N E      +     G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 25/154 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+    E+
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK--------DLSSGLG 613
                Q+ L I +          +K  +         G+ K+A                G
Sbjct: 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                N              G+ ++     +   
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 60.2 bits (147), Expect = 1e-09
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 24/155 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
                L +  +S G Y+ A     +A++                   L   Y+D    + 
Sbjct: 28  RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI-------KDLSSGLGI 614
           A   L   L I ++         +   +   +L    G++K+A        +     LG 
Sbjct: 88  AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147

Query: 615 D-PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
           D P   + L   A      G+Y E    Y  AL++
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 23/149 (15%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+Y++ E  + +A+++ +        N  +   +L   Y      ++A    
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +          G+ K        G       +D P+  
Sbjct: 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDL 648
             L    + Y   G++  A    +AA+  
Sbjct: 279 TTLKNLGALYRRQGKFEAAETLEEAAMRS 307

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 24/154 (15%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L L      +YK A      A+ +    L            +L   Y      ++
Sbjct: 70  TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 129

Query: 570 ALECLQQVLYIDKRFSKAYHLR--------GLLLHGLGQHKKAIKDLSSGLGI------- 614
           A    ++ L I ++     H           LL    G++++        L I       
Sbjct: 130 AEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189

Query: 615 -DPSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
            DP+  +     ASCY   G++++A   Y   L 
Sbjct: 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  Q ++E A+    E +Q+ P    EA+   G A   LG+  +A+ +   A+E  
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 480 PNSADILHER---GIVNFKFKDF 499
           P+S  +   +    I+NF  KD 
Sbjct: 66  PDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
               L   G  + A++ L   L  +P    E  YL  + Y  +G++++A+ +Y +A++L 
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 650 LDSME----KFVLQCLAFYQKEI 668
            DS      K V+  L FY K++
Sbjct: 66  PDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI 442
           +L      +N+G   +A+   ++ L+ +P+   EA    G A     + + A++++  AI
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 443 QSNPSAGEAWKRR 455
           + NP +     R+
Sbjct: 63  ELNPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEA 539
            +   L  +G       D   A++ L   ++ +   K  AY  +G A   +G+++KA   
Sbjct: 5   KTIKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN 57

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
           +  AI+L+ +                     L    + +Y        +H
Sbjct: 58  YQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHHHHH 99

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 562 QDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
            +  + E AL+ L++ L  +     +AY+L G     LG  +KA+ +  S + ++P +
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
            L + G+ + A +A  + +Q +     EA+  +   Y+ L + +KAL   Q  + ++   
Sbjct: 9   ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Query: 585 SKAYHLRGLL 594
                 + ++
Sbjct: 69  PALQARKMVM 78

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 25/154 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+   +E+
Sbjct: 86  ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI----KDLSSG----LG 613
                ++ L I            +K  +         G+++ A     + L+       G
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                N            +  + R++    +   
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 23/148 (15%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+ ++ E  + +A+++          N  +   +L   Y      + A    
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +           + + +      G       +D P+  
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALD 647
             L    + Y   G+   A    D A  
Sbjct: 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 24/149 (16%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEKALECL 574
           L L      +YK+A      A+ +    L            +L   Y      ++A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 575 QQVLYIDKRFS--------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI--------DPSN 618
           ++ L I ++          K  +   LL    G+ ++        L I        DP+ 
Sbjct: 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALD 647
            +     ASCY   G+Y++A   Y   L 
Sbjct: 169 AKTKNNLASCYLKQGKYQDAETLYKEILT 197

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 54.1 bits (131), Expect = 8e-08
 Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 29/160 (18%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQD 563
           +   +   +   GL          A     +A++                   L   Y+D
Sbjct: 1   MGSSHHHHHHSSGL-----VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 55

Query: 564 LANSEKALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI----KDLS-- 609
               ++A   L   L I ++         +   +   +L    G++K+A     + L   
Sbjct: 56  QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 115

Query: 610 -SGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALD 647
              LG   P   + L   A      G+  E    Y  AL+
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 50  RNWSKAIRI------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +++  AI+       L+   A  Y      NR+  Y + E + + + D  +A++LD   +
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYI 74

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           + Y  +  +  ALG+   AL  +E   +   H      ++ E  +++     +R++  + 
Sbjct: 75  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134

Query: 164 DVSNSMSSLTVSESGLNAN 182
              + + SL +    +   
Sbjct: 135 HKRSVVDSLDIESMTIEDE 153

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 61.2 bits (149), Expect = 9e-10
 Identities = 24/93 (25%), Positives = 40/93 (43%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
            R   N     F AA+ D    VK+   +K A 
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              Y +AI  + Q ++ +P        R  A         A+ D T AI+ +    + + 
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADIL--HERGIVNFKFKDFNAAVEDLSACVK 511
           RR  +  ALG+   A++D    ++ +P+  D    ++      K K F  A+        
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA------- 131

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            D+  +S      L + S+    +     L+  ++  +F++  
Sbjct: 132 GDEHKRSVVD--SLDIESMTIEDEYSGPKLEDGKVTISFMKEL 172

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.1 bits (133), Expect = 8e-08
 Identities = 32/185 (17%), Positives = 71/185 (38%), Gaps = 15/185 (8%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y+ A + + +AI+L+ +    +G+ +  Y        AL    + + +DK++ K Y+ 
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLEL 650
           R      LG+ + A++D  + + + P +               E  + +K       +  
Sbjct: 80  RAASNMALGKFRAALRDYETVVKVKPHD-------KDAKMKYQECNKIVKQKAFERAIAG 132

Query: 651 DSMEKFVLQCLAFYQKEI-ALYTASKI-NSEFCWFDIDGDIDPLFKEYWCKRLHPKNV-- 706
           D  ++ V+  L      I   Y+  K+ + +     +   +         K+LH K    
Sbjct: 133 DEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKD---QKKLHRKCAYQ 189

Query: 707 -CEKV 710
              +V
Sbjct: 190 ILVQV 194

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 45/106 (42%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
                 E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            D +  ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK  +N+  + K +       S++I ++     +  +R +A +    Y  A+    + 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR----RGQARAALG 463
           ++ D  Y +    R  +     +  AA+ D+   ++  P   +A  +        +    
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
           E   A  +  +++    +   +  E      K +D    +  +   ++  K+ K
Sbjct: 127 ERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQK 180

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTA------------RAF----QRELEAAISD 437
           + +   AI  + + L       E                     A      ++   AI  
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
            ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   +   K K
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170

Query: 498 DFNA 501
           +   
Sbjct: 171 EARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 24/109 (22%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI----------CNRAFCYSQLELHKHVIRDCDKALQL 98
           +  + +A+           +I              N A CY++ + +   I    K L++
Sbjct: 58  IVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           D   ++A    G A    G  EEA                +L +   L 
Sbjct: 118 DKNNVKALYKLGVANMYFGFLEEAK--------------ENLYKAASLN 152

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 568 EKALECLQQVLYID--------KRFSKAYHL-RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           ++AL+        D        K    + +L      +    + KAI   S  L ID +N
Sbjct: 62  KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           ++ LY         G   EA ++   A  L 
Sbjct: 122 VKALYKLGVANMYFGFLEEAKENLYKAASLN 152

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+                Y     AL      ++ ++  
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIV--------------KYKE---ALDFFIHTEEWDDQI 78

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 79  -LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            K K+I +   L+          Y  AI    ++LK D    +AL   G A  +   LE 
Sbjct: 81  DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140

Query: 434 AISDFTEAIQSNPSAGEA 451
           A  +  +A   NP+  + 
Sbjct: 141 AKENLYKAASLNPNNLDI 158

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 26/111 (23%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI------------CNRAFCYSQLELHKHVIRDCDKAL 96
           +  +  A+  LD+L+ +    +               N + CY  +           + L
Sbjct: 31  IDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           + + T  +A   +  A  A  + +EA                DLK  L   
Sbjct: 91  KREETNEKALFRRAKARIAAWKLDEAE--------------EDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARA-----------FQRELEAAISDFTEAIQS 444
            Y  A++  D ++  +       +                     +L  A    +E ++ 
Sbjct: 33  AYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
             +  +A  RR +AR A  +  EA +DL   L   P +A ++  
Sbjct: 93  EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           +G   +A +  S  L  + +N + L+ RA    A  +  EA +D    L   
Sbjct: 76  IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  Y  AI  +   L                          +      + +N        
Sbjct: 24  QKDYKEAIDAYRDALTRLDTLILR-------EKPGEPEWVELDRKNIPLYAN-------- 68

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q    +G+  EA +  S+ L+ E  +   L  R          + A EDL   ++  
Sbjct: 69  -MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 514 KENKSAYT-YLGLALSSIGEYKKAEEAHLK 542
               S     + +      E K        
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYS 157

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            S + L ++G   F  KD+  A++     +                    GE +  E   
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------REKPGEPEWVELDR 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
                        + +++Q Y ++ +  +A E   +VL  ++   KA   R        +
Sbjct: 61  KNIP--------LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK 112

Query: 601 HKKAIKDLSSGLGIDPSN 618
             +A +DL   L   P+ 
Sbjct: 113 LDEAEEDLKLLLRNHPAA 130

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            +    ++    +     +N G    A     ++LK +    +AL  R  AR    +L+ 
Sbjct: 56  VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115

Query: 434 AISDFTEAIQSNPSAGEAWKR 454
           A  D    ++++P+A     R
Sbjct: 116 AEEDLKLLLRNHPAAASVVAR 136

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTA--------RAF----QREL 431
           RG     EGKY  A+  + +I+     +  +      +  A         A      +  
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272

Query: 492 VNFKFKDFNA 501
              + +   A
Sbjct: 273 CQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---------CNRAFCYSQLELHKHVIRDCDKALQLD 99
           L  + K +  L+   + S E              N A C+ +L+     I  C+KAL+LD
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
               +    +G A  A+   E A + ++K  +   +  A   Q    ++ +     
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L     AI+  +  L +D +N + L  R   + A+ ++  A  D+   L L 
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 34/161 (21%), Positives = 49/161 (30%), Gaps = 19/161 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             + I+ ERG V FK   +  A+      V           +L    S   E  +  +A 
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVS----------WLEYESSFSNEEAQKAQAL 194

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
             A  L  N       L   +  L     A+E   + L +D    K    RG     +  
Sbjct: 195 RLASHL--N-------LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641
            + A  D    L + P+N       A C   I       K 
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 17/77 (22%), Positives = 37/77 (48%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434
           K++++ +   L+  +  +    +++AI   ++ L+ D    + L  RG A     + E A
Sbjct: 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA 249

Query: 435 ISDFTEAIQSNPSAGEA 451
            +DF + +Q  P+   A
Sbjct: 250 RADFQKVLQLYPNNKAA 266

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 26/193 (13%), Positives = 56/193 (29%), Gaps = 23/193 (11%)

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDF 499
            SA   + +   A     +  +A     +  E         ++A    + G++    +  
Sbjct: 33  DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92

Query: 500 NAAVEDLSACVKL----DKENKSAYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNF---- 550
             AV+ +     +       + +A        L    +  KA   + +A  +  N     
Sbjct: 93  PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLR 152

Query: 551 --LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS------KAYHLRGLLLHGLGQHK 602
              E  G  ++        ++A   LQ+   + K         K    + L+      + 
Sbjct: 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212

Query: 603 KAIKDLSSGLGID 615
            A K +     I 
Sbjct: 213 AAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 32/233 (13%), Positives = 68/233 (29%), Gaps = 38/233 (16%)

Query: 467 EAIQDLSKALEFEPNS-----------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           EA + ++KA ++   S           A    +  +     K    A +      +    
Sbjct: 9   EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN 68

Query: 516 NKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQD 563
           N+S      A+   G+ L  +    +A +   KA  +            A     +  + 
Sbjct: 69  NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSG 611
           L +  KA+   QQ   + +        ++       LL    +  +A         +   
Sbjct: 129 L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE--LDSMEKFVLQCLA 662
           +   P+  +    +        +Y  A K    +  +     S +   L+ L 
Sbjct: 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL 240

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFD---QILKEDPMYPEALIGRGTARAF------ 427
           +  + D R   G +   E K   A+  ++     + +D M+      +  A A       
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 428 --------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                    +  + AI      +       +A  RRG+A+A LG+   A  D  KA ++ 
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

Query: 480 PNSADILHERGIVNFKFKDFNA 501
           P+   I  E   +  + K    
Sbjct: 295 PDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 49  LRNWSKAIRIL---------DSLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQ 97
           ++ +  AI  +               +  +++ C  N A C  +L+ +   I  C+  L 
Sbjct: 199 MQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258

Query: 98  LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
            +    +A   +G A + LG+ + A   + K  ++A    A  ++   L E   A  Q
Sbjct: 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           L ++ +AI   +  L  +  N + L+ R      +G+   A  D+  A    
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 17/155 (10%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           AD     G   FK +    A++     +    ++              G+Y+    A   
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVKN 230

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              L  N       +      L   ++A+     VL  +++  KA   RG     LGQ  
Sbjct: 231 PCHL--N-------IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMD 281

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            A  D        P +        +         +
Sbjct: 282 SARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 23/72 (31%), Positives = 32/72 (44%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           + + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E 
Sbjct: 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347

Query: 490 GIVNFKFKDFNA 501
             V  K K    
Sbjct: 348 LKVKQKIKAQKD 359

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           + +   A+    +ALE +P++   L+ R       K+++ A+ DL    ++  E+K+   
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345

Query: 522 YLGLALSSIGEYKKAEEAHLK 542
            L      I   K  E+A   
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYA 366

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           +   + A+      L IDPSN + LY RA  +  + EY +A+ D   A ++ 
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 24/109 (22%)

Query: 49  LRNWSKAIRILD--------SLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQL 98
           ++ ++K +R ++        +  A+   +   C  N   C  ++   +  +  C +AL++
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           DP+  +A   +   +  L   ++AL              ADLK+  E+ 
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQAL--------------ADLKKAQEIA 337

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 15/131 (11%), Positives = 42/131 (32%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L +    + +G++A A+++   +  E     +  + +       ++ E A          
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                                   ++ L + L   P++ ++  E  +   +      A+E
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129

Query: 505 DLSACVKLDKE 515
            L   +K++  
Sbjct: 130 LLWNILKVNLG 140

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 25/143 (17%), Positives = 48/143 (33%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SN S  E   ++       GE  +A+  +    +   +  D+   +     + K F  A 
Sbjct: 1   SNASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           E L+      ++N        L L          +   + +  + +  E    L   Y  
Sbjct: 61  ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120

Query: 564 LANSEKALECLQQVLYIDKRFSK 586
           +   E+ALE L  +L ++     
Sbjct: 121 VGRDEEALELLWNILKVNLGAQD 143

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 55.5 bits (133), Expect = 6e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            RE   A+    +A+  + +  +   RRG+A+  + E   A  D  K LE  P +     
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 488 ERGIVNFKFKDFNA 501
           +  +   K K+ N 
Sbjct: 390 QISMCQKKAKEHNE 403

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDIC---------NRAFCYSQLELHKHVIRDCDKALQLD 99
           +  + K +  L+     S +              N A CY +L  +   +  CDKAL LD
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
               +    +G A   +   E A                D ++ LE+ 
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAK--------------GDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           L E  +A++   KAL  +  +   L+ RG       +F +A  D    ++++ +NK+A  
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 522 YLGLALSSIGEYKKAE 537
            + +      E+ + +
Sbjct: 390 QISMCQKKAKEHNERD 405

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHG--------LGQHKKAIKDLSSGLGIDPSNI 619
            K +  L+    + ++ SKA     L            L ++ KA++     LG+D +N 
Sbjct: 292 GKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE 351

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           + LY R      + E+  A  D++  L++ 
Sbjct: 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.1 bits (119), Expect = 3e-06
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
            I+ E+G V FK   +  AV           +     ++L +      +  KA E+ L A
Sbjct: 269 AIVKEKGTVYFKGGKYMQAV----------IQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
             L+         L   Y  L    KA+EC  + L +D    K  + RG     + + + 
Sbjct: 319 AFLN---------LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 369

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641
           A  D    L ++P N       + C     E+ E  + 
Sbjct: 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 49.1 bits (116), Expect = 7e-07
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 23/122 (18%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------------ALIGRGTARAFQRE 430
             LS    Q+  G+Y  A +   + ++     P                G   A A  R 
Sbjct: 13  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72

Query: 431 LEAAISDFTEAIQS-------NPSAGEAWK----RRGQARAALGESVEAIQDLSKALEFE 479
            + A+    +A+         N   G+ W      R  A   LG   EA+ +  K +E  
Sbjct: 73  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132

Query: 480 PN 481
             
Sbjct: 133 EE 134

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 27/168 (16%)

Query: 510 VKLDKENKSAYTYLGLALSSI--GEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLA 565
           +K  KE   AY  L  A   +  GEY +A     +A+++       EA+ H        A
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA 61

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IEC 621
              +AL  L       + F +A          L    KA+   +    ++       I  
Sbjct: 62  GLAEALAGL-------RSFDEA----------LHSADKALHYFNRRGELNQDEGKLWISA 104

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669
           +Y RA     +G   EA+ ++     +E+    K          +   
Sbjct: 105 VYSRALALDGLGRGAEAMPEFKKV--VEMIEERKGETPGKERMMEVAI 150

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
                +  GKY  A  +F   L+        P AL   G +    R  + A + F + + 
Sbjct: 8   VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67

Query: 444 SNPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
             P+   A     + G ++   G++ EA Q L +     P S 
Sbjct: 68  RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 17/172 (9%), Positives = 52/172 (30%), Gaps = 24/172 (13%)

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALEC 573
             Y+   +    +Y+       K +            L     +   Y +    +K ++ 
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177

Query: 574 LQQVLYIDKRFSKAYHLR-------GLLLHGLGQHKKAIK------DLSSGLGIDPSNIE 620
            +Q+L   +                   L+   ++++++       ++S  +       +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237

Query: 621 CLYLRASCYHAIGEYREAIKDY-DAALDL----ELDSMEKFVLQCLAFYQKE 667
             Y R  C   +      I+D    A       E+ + ++ ++  ++  +  
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHH 289

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
                         E   A ++ LKA    +           +    + ++   NS  A+
Sbjct: 38  DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97

Query: 572 ECLQQVLYI---DKRFSKA----YHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSN 618
           + L+  + I     +F +     + L  +L + L  + KAI       +  +       +
Sbjct: 98  DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157

Query: 619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDS 652
            +C    A      G+Y EA   Y   +   + +
Sbjct: 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Length = 349

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 55/326 (16%), Positives = 94/326 (28%), Gaps = 55/326 (16%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           +Y  A+  F  I  ++     AL                       ++ NP+    W+ R
Sbjct: 52  EYKDAMDYFRAIAAKEEKSERAL-----------------ELTEIIVRMNPAHYTVWQYR 94

Query: 456 GQARAALGESVEAIQDLS-KALEFEPNSADILHERGIVNFKFKDFNAAVE--DLSACVKL 512
                +L +S+E    L  +       S  + H R ++  +    +   E   +   +  
Sbjct: 95  FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP 154

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHL--------KAIQLD-RNFLEAWGHLTQFYQD 563
           D +N   + YL    S      +  EA          + +++D RN   AWG        
Sbjct: 155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN-SAWGWRWYLRVS 213

Query: 564 LANSEKALECLQQVL-YIDKRFSKA-------YHLRGLLLH-GLGQHKKAIKDLSSGLGI 614
              +E +   LQ  L YI K             +LRG L H  L         L      
Sbjct: 214 RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTAS 674
              +IE +        +     +       AL+   DS  +              ++   
Sbjct: 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR-----VDDAAKVFEKL 328

Query: 675 KINSEFCWFDIDGDIDPLFKEYWCKR 700
                        + D +   YW  R
Sbjct: 329 SS-----------EYDQMRAGYWEFR 343

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 306

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 40/268 (14%), Positives = 82/268 (30%), Gaps = 25/268 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLS 507
           +          A   S  A+      +    +   I   R   + N   ++    ++   
Sbjct: 34  QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCE 93

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKA-----EEAHL--KAIQLD-RNFLEAWGHLTQ 559
                +++N   + Y  L +  I E          E  +    +  D +N    W +   
Sbjct: 94  EIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH-HVWSYRKW 152

Query: 560 FYQ--DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH------KKAIKDLSSG 611
                DL N  K L  + +V+  D + + A+  R  LL             + +  +   
Sbjct: 153 LVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDK 212

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAIKDY-DAALDLELDSME-KFVLQCLAFYQKEIA 669
           +   P N          +         ++++    +DLE D +   F L+ LA    +I 
Sbjct: 213 IVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA----KIY 268

Query: 670 LYTASKINSEFCWFDIDGDIDPLFKEYW 697
                   S   +  +    +P+   +W
Sbjct: 269 TQQKKYNESRTVYDLLKSKYNPIRSNFW 296

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 2/129 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
            +  + E  Y  A+ +     +      E  +            E A       I     
Sbjct: 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDA-EAVLXTIPLQDQ 182

Query: 448 AGEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    Q            IQ L + +   P  A +  +  +   +      A+E L
Sbjct: 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242

Query: 507 SACVKLDKE 515
              ++ D  
Sbjct: 243 FGHLRXDLT 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1050
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-33
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-32
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-30
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-27
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-26
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-26
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-20
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-19
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-15
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-13
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-19
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-19
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-15
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-12
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-18
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	7e-13
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-17
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-15
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-17
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-15
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-14
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-11
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-15
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-15
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-13
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	9e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-08
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-13
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	9e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	8e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	8e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	0.004
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	2e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.003
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	5e-07
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	6e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.003
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 6e-33
 Identities = 43/233 (18%), Positives = 93/233 (39%)

Query: 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
            + + + ++  P +  A    G     Q E+  AI  F +A+  +P+  +A+   G    
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
                  A+    +AL   PN A +      V ++    + A++     ++L      AY
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
             L  AL   G   +AE+ +  A++L     ++  +L    ++  N E+A+   ++ L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              F+ A+     +L   G+ ++A+      + I P+  +      +    + 
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (323), Expect = 1e-32
 Identities = 45/215 (20%), Positives = 87/215 (40%)

Query: 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494
            + + +AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           + + F+ AV      + L   +   +  L       G    A + + +AI+L  +F +A+
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
            +L    ++  +  +A +C    L +    + + +    +    G  ++A++     L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 615 DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
            P         AS     G+ +EA+  Y  A+ + 
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 2e-30
 Identities = 42/250 (16%), Positives = 87/250 (34%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
                    +       K C  +  +++        + G     +G+   AI  F++ + 
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            DP + +A I  G      R  + A++ +  A+  +P+               G    AI
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
               +A+E +P+  D          +      A +  +  ++L   +  +   L      
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G  ++A   + KA+++   F  A  +L    Q     ++AL   ++ + I   F+ AY 
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 590 LRGLLLHGLG 599
             G  L  + 
Sbjct: 378 NMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-27
 Identities = 63/329 (19%), Positives = 122/329 (37%), Gaps = 1/329 (0%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   EA+   G      G+  EAI+    AL  +P+  D             D   AV+
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
              + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A+   ++ + +D  F  AY   G +L       +A+      L + P++      
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 625 RASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFD 684
            A  Y+  G    AI  Y  A++L+    + +     A  +K  ++  A    +      
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG-SVAEAEDCYNTALRLC 301

Query: 685 IDGDIDPLFKEYWCKRLHPKNVCEKVYRQ 713
                         +         ++YR+
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRK 330

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 1e-26
 Identities = 34/186 (18%), Positives = 75/186 (40%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++ G        +  A++ + + L   P +             Q  ++ AI  +  
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI+  P   +A+     A    G   EA    + AL   P  AD L+    +  +  +  
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      +++  E  +A++ L   L   G+ ++A   + +AI++   F +A+ ++   
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 561 YQDLAN 566
            +++ +
Sbjct: 383 LKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-26
 Identities = 69/341 (20%), Positives = 116/341 (34%), Gaps = 40/341 (11%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--------------- 424
           +    L          +   +       +K++P+  EA    G                 
Sbjct: 32  NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

Query: 425 -------------------RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
                                   ++E A+  +  A+Q NP         G    ALG  
Sbjct: 92  HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525
            EA     KA+E +PN A      G V     +   A+      V LD     AY  LG 
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
            L     + +A  A+L+A+ L  N     G+L   Y +    + A++  ++ + +   F 
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA 645
            AY      L   G   +A    ++ L + P++ + L   A+     G   EA++ Y  A
Sbjct: 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331

Query: 646 LDLELDSMEKF-----VLQCLAFYQKEIALYT-ASKINSEF 680
           L++  +          VLQ     Q+ +  Y  A +I+  F
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 2e-13
 Identities = 23/119 (19%), Positives = 44/119 (36%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             D   +   A   +G  A A   ++  L+  P + ++L      +  Q  +E A+  + 
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +A++  P    A           G+  EA+    +A+   P  AD     G    + +D
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 1e-12
 Identities = 43/397 (10%), Positives = 108/397 (27%), Gaps = 20/397 (5%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    Q    +   R C +  + +P      +L         R + +        +  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61

Query: 134 LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193
                  + +  L  +     Q +     Y  +  +    +      A   ++       
Sbjct: 62  -QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN 253
                 +   + D+    S   +         +          ++    +         N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 254 HNGSSDGSKSTHASRDASEINRQSSD------DFDICNGPIDKA-SVNERHGRQTNGTHD 306
             G      + H    A  ++    D      +        D+A +   R    +     
Sbjct: 181 AQGEIW--LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

Query: 307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNK 366
           VH  L+         +   ++Y ++        D+  + +    +   + E  +      
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

Query: 367 KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426
           + C            D   +    +  +G    A+ ++ + L+  P +  A     +   
Sbjct: 299 RLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
            Q +L+ A+  + EAI+ +P+  +A+   G     + 
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 41/249 (16%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
             E     ++  DF AA        + + +N      L           ++      AI+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALE--------------------------------- 572
            +    EA+ +L   Y++    ++A+E                                 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 573 -CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
                 L  +          G LL  LG+ ++A       +   P+           ++A
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 632 IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDP 691
            GE   AI  ++ A+ L+ + ++       A+      L  A   +     +     + P
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLD-------AYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 692 LFKEYWCKR 700
                    
Sbjct: 235 NHAVVHGNL 243

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 6e-08
 Identities = 10/123 (8%), Positives = 24/123 (19%)

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
               +  G  + A +        +P N   L L +S +        +      A+     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 652 SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCEKVY 711
             E +      + ++                     D               +   +   
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

Query: 712 RQP 714
              
Sbjct: 126 SAL 128

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L   R + +A+      L+ S     +  N A  Y +  L    I    +A++L P    
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEH 132
           AY     A    G   EA   +      
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRL 300

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICN-RAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L    + ++A    ++ L       D  N  A    +    +  +R   KAL++ P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A+          G+ +EAL  +++   
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 105 AYILKGCAFSALG 117
           AY   G     + 
Sbjct: 375 AYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            N    ++        I   +KA+ LDP  L AYI  G         + A++ + +   
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 41  IELAKLC-SLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAF 113
           +P L +AY   G  +
Sbjct: 63  NPLLAEAYSNLGNVY 77

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 2e-20
 Identities = 24/254 (9%), Positives = 70/254 (27%), Gaps = 12/254 (4%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA- 458
           +     Q         ++ +G       ++ L+     + + + ++       K      
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61

Query: 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
             A    +  +Q  +K       S    +    +      +   +++L     +D   + 
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
             + LG+  +         +    +            HL    +    + +A    +   
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAI 632
            +     + Y+   +L    G H   I      + +        +N++    +A      
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE 239

Query: 633 GEYREAIKDYDAAL 646
            + +  + D+  A 
Sbjct: 240 VKTKWGVSDFIKAF 253

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 1e-19
 Identities = 23/219 (10%), Positives = 59/219 (26%), Gaps = 6/219 (2%)

Query: 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH-ERGIV 492
           +     +A        ++     +   +     +  Q   K L  +   A     E+ + 
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQ---KMLVTDLEYALDKKVEQDLW 61

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           N  FK+    ++  +        ++          ++ G Y +  +       +D     
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L        ++   ++                   G +     Q  +A        
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
            + PSN +     A    + G++   I  Y  ++ ++  
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-15
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 5/194 (2%)

Query: 397 YASAISIFDQILKEDP---MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           + + I+      K                   A        + +       +        
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + G        +   ++  S +          L   G +       + A        +L 
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             N   Y  L +  SS G++      + ++I +   F  A  +L +       S   ++ 
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242

Query: 574 LQQVLYIDKRFSKA 587
              V    K F K 
Sbjct: 243 KWGVSDFIKAFIKF 256

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 8e-13
 Identities = 25/205 (12%), Positives = 52/205 (25%), Gaps = 10/205 (4%)

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
           S+++ Q L +A   + +  D       V    +      + +   +  D E         
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKM---LVTDLEYALDKKVEQ 58

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH---LTQFYQDLANSEKALECLQQVLYID 581
              +    +K          +   N   +                  + L+ L  V  +D
Sbjct: 59  DLWNH--AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD 116

Query: 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKD 641
                     G++ +        +K  SS          CL           +  +A   
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESY 174

Query: 642 YDAALDLELDSMEKFVLQCLAFYQK 666
           Y  A  L   + + +    +    K
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSK 199

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 17/162 (10%), Positives = 50/162 (30%), Gaps = 11/162 (6%)

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           ++ +   +A  L  +  ++     + +      +   +  Q++L  D  ++    +   L
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSR---QALQDLYQKMLVTDLEYALDKKVEQDL 60

Query: 595 L-HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM 653
             H        ++  +        +     L      A G Y + +++     +++L   
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 654 EKF-----VLQCLAFYQKEIALYT-ASKINSEFCWFDIDGDI 689
            K      +          +   + +     + C   + GDI
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL-GDI 161

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 361 EAKRNKKFCVTRISKSKSISVDFRLS---RGIAQVNEGKYASAISIFDQILKEDPMYPEA 417
            A       +  +    ++ +  R+     GI    +   ++ +                
Sbjct: 97  AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHC 154

Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
           L+  G    ++ +   A S +  A Q  PS G+ + +     ++ G+ +  I    +++ 
Sbjct: 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214

Query: 478 FEPNSAD 484
            +     
Sbjct: 215 VKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 13/122 (10%), Positives = 37/122 (30%), Gaps = 10/122 (8%)

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-----NIEC 621
           S ++ + L+Q   +    + +      +       +   + +   L  D        +E 
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKM---LVTDLEYALDKKVEQ 58

Query: 622 LYLRASCYHAIGEYREAIKDYDAALDLEL-DSMEKFVLQCLAFYQKEIALY-TASKINSE 679
                +  + I   +   K+       E+  ++  F+     FY + +    T   ++  
Sbjct: 59  DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118

Query: 680 FC 681
             
Sbjct: 119 CR 120

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 8/71 (11%), Positives = 19/71 (26%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G       + + A S +    +  P   +         + + +    I  +  +I     
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 448 AGEAWKRRGQA 458
              A     +A
Sbjct: 219 FPAASTNLQKA 229

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 3e-19
 Identities = 35/269 (13%), Positives = 87/269 (32%), Gaps = 13/269 (4%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG------QHKKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++            ++ ++     + 
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214

Query: 614 IDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTA 673
           + P N              G   +     +  LDL+      +++  L    +++     
Sbjct: 215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273

Query: 674 SKINSEF-----CWFDIDGDIDPLFKEYW 697
                           +  + D + KEYW
Sbjct: 274 DNKEDILNKALELCEILAKEKDTIRKEYW 302

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-10
 Identities = 20/171 (11%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
            +      +  I     F + + +     Q    SE+A +  +  + ++      +H R 
Sbjct: 25  PQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 84

Query: 593 LLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
           +LL  L +   + +  +++ +   P N +  + R      + +  + ++     L+ +  
Sbjct: 85  VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 144

Query: 652 SMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWCKRLH 702
           +          +  ++  +      ++E  + D     D      W +R  
Sbjct: 145 NYHA-------WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (215), Expect = 3e-19
 Identities = 51/294 (17%), Positives = 101/294 (34%), Gaps = 21/294 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142

Query: 494 ----FKFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+L     +      LG+  +  GEY KA +    A+ + 
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYR----EAIKDYDAALDLELDSMEKFV 657
               L +   +        +    I          +   DA    +   +   +
Sbjct: 263 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 316

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 2e-15
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 17/259 (6%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
                    G  R  + +L  A+  F  A+Q +P   EAW+  G  +A   + + AI  L
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------ 526
            + LE +P++   L    +          A E L   ++         T           
Sbjct: 77  RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 136

Query: 527 ---------LSSIGEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQ 575
                    L S   + + +E  L A++L       +    L   +      +KA++C  
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 196

Query: 576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
             L +       ++  G  L    Q ++A+      L + P  I   Y        +G +
Sbjct: 197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 256

Query: 636 REAIKDYDAALDLELDSME 654
           REA++ +  AL+++  S  
Sbjct: 257 REAVEHFLEALNMQRKSRG 275

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 8e-12
 Identities = 37/247 (14%), Positives = 70/247 (28%), Gaps = 24/247 (9%)

Query: 474 KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           K  +FE            E G+   +  D   AV    A V+ D ++  A+ YLG   + 
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
             +   A  A  + ++L  +   A   L   + + +   +A E L+  L     ++    
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
                  G G                               +   + E  + + AA+ L+
Sbjct: 126 PAEEGAGGAGLG-------------------PSKRILGSLLSDSLFLEVKELFLAAVRLD 166

Query: 650 LDSMEKFVLQCLAFYQKEIALY-TASKINSEFCWFDIDGDIDPLFKEYWCKRLHPKNVCE 708
             S++  V   L         Y  A    +       +  +            +      
Sbjct: 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226

Query: 709 KVYRQPP 715
             YR+  
Sbjct: 227 AAYRRAL 233

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.8 bits (211), Expect = 2e-18
 Identities = 25/243 (10%), Positives = 66/243 (27%), Gaps = 7/243 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--RAFQRELEAAISDFTEAIQSNPS 447
            + +     + +   +  L+ +P        R     R  +      +      ++++  
Sbjct: 82  PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141

Query: 448 -AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                  RR  A  A     E +      +    ++    H R  +  +      +    
Sbjct: 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                +  +                   ++   + + +      L       +    L +
Sbjct: 202 RLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS 257

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             ++ + LQ++   +K       L    L  L   K+ ++  S+   +DP     L    
Sbjct: 258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317

Query: 627 SCY 629
           S +
Sbjct: 318 SKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.9 bits (167), Expect = 7e-13
 Identities = 35/291 (12%), Positives = 74/291 (25%), Gaps = 50/291 (17%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV----------NFKFKDF 499
            A +   Q R A       ++  S+ L   P+ A + + R  V                 
Sbjct: 30  SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHL 557
            A +  L +C++++ ++   + +    LS + E  + +  E   + ++ D      W + 
Sbjct: 90  KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149

Query: 558 TQF-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--- 613
                Q      + L     ++  +     ++H R  LL  L     +            
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209

Query: 614 ---------------------------IDPSNIECLYLRASCYHAIGEYREAIKDYDAAL 646
                                           +    L       +    E+ K+     
Sbjct: 210 KELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELE 269

Query: 647 DLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW 697
                 +               AL           +F     +DP+   Y 
Sbjct: 270 PENKWCLL-------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 4/153 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R            +               E +        F    + +   +   +    
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRA 239

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                 +   +    L   +E+ ++L +           +                ++  
Sbjct: 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           S    +D    +    L           K E A
Sbjct: 300 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 6/85 (7%), Positives = 18/85 (21%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
              R    ++  +                  +     ++  E+      +I    A    
Sbjct: 230 FYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 289

Query: 429 RELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  F+     +P       
Sbjct: 290 LYEKETLQYFSTLKAVDPMRAAYLD 314

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 82.2 bits (201), Expect = 1e-17
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 6/228 (2%)

Query: 430 ELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           + E  ++   + + S    +    +    RG    +LG    A  D S+AL   P+  ++
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
            +  GI   +  +F+AA E   + ++LD     A+   G+AL   G  K A++  L   Q
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133

Query: 546 LDRNFLE--AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            D N      W +L +   D   +++ L+   +    ++            +      ++
Sbjct: 134 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD 651
              D +    +     E  +     Y ++G+   A   +  A+   + 
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 75.6 bits (184), Expect = 2e-15
 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFY 561
           +DL A  + D  +     +L LA   + E +  E       + D+               
Sbjct: 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 2/232 (0%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
              + +          RG+   + G  A A + F Q L   P  PE     G        
Sbjct: 27  ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            +AA   F   ++ +P+   A   RG A    G    A  DL    + +PN         
Sbjct: 87  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146

Query: 491 IVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           +   K  +  A         K DKE    +   +    +S     ++ +        L  
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  E   +L ++Y  L + + A    +  +  +      +    L L  LGQ
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 30/168 (17%), Positives = 60/168 (35%)

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           + L++    D E        G+   S+G    A     +A+ +  +  E + +L  +   
Sbjct: 24  QILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 83

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
             N + A E    VL +D  ++ A+  RG+ L+  G+ K A  DL +    DP++     
Sbjct: 84  AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143

Query: 624 LRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
                   + E +            + +     +++       E  L 
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 191

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 561 YQDLANSEKALECLQQVLYI----DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
            Q     E  L  ++Q+L      D   ++  + RG+L   LG    A  D S  L I P
Sbjct: 9   LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68

Query: 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME-----KFVLQCLAFYQKEIALY 671
              E            G +  A + +D+ L+L+             L      +      
Sbjct: 69  DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128

Query: 672 TASKINSEFCWF 683
            A   +     F
Sbjct: 129 LAFYQDDPNDPF 140

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.0 bits (196), Expect = 2e-17
 Identities = 28/197 (14%), Positives = 64/197 (32%), Gaps = 6/197 (3%)

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +PSA +  K +G       +  EA     +A+   P  A     R +   K +    A+ 
Sbjct: 1   SPSA-QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           D    ++LD ++  A+ +LG     +  Y +A     +A  L +     +G         
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-- 117

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A +     +   +   ++     L      + ++ +++          +      
Sbjct: 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQ 174

Query: 625 RASCYHAIGEYREAIKD 641
           +A       +Y   + +
Sbjct: 175 QACIEAKHDKYMADMDE 191

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 6e-15
 Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 5/188 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + +A    GQ +  +    EAI +L +A            +      +      A +  
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKR 124

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++  + ++ +  +  L      E ++  E   +  +   +                 
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

Query: 567 SEKALECL 574
               ++ L
Sbjct: 185 YMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (172), Expect = 3e-14
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 5/193 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           + L  +G      R+   A + +  AI  NP     +  R      + +  +A+ D  +A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           LE +  S       G    + + ++ A+ +L     L KE +  +     +       + 
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-----LRI 119

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
           A++    +I+  R   E+  H        A  E+ LE  Q+     +        +  + 
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 596 HGLGQHKKAIKDL 608
               ++   + +L
Sbjct: 180 AKHDKYMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 2e-11
 Identities = 23/157 (14%), Positives = 51/157 (32%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G  L    +Y +A   + +AI  +      + +    Y  +   E+AL   ++ L +D 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           +  KA+   G     +  + +AI +L     +                 I + +      
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129

Query: 643 DAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSE 679
           +  +  E +          A  ++E+     +    E
Sbjct: 130 ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 20/187 (10%), Positives = 54/187 (28%), Gaps = 10/187 (5%)

Query: 355 LKETSNEAKRNKKF-----CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           LKE  N     +K+     C  R      +   +  +R +  +   +   A++   + L+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            D    +A    G  +      + AI++   A          +     +   +     A 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AK 121

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +    ++E      +      +      +    +E+     +  +++           + 
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

Query: 530 IGEYKKA 536
             +Y   
Sbjct: 182 HDKYMAD 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 3/163 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +L   R + +A       + ++  +     NRA CY +++  +  + DC +AL+LD   +
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           +A+   G     +   +EA++  ++ Y   L +   L    ++   L  AK+ R  + E 
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 164 DVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRD 206
              +  S L    + L A ++  E  E     +  +     R 
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 1e-15
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           L   G++    KD+  A++  S    +   +      +G   + +    +AE+A  ++I 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
            D++   A+      Y      + A++ L++ L   +                    + I
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------------------GNQLI 106

Query: 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQ 665
                GL       E LY  A  Y    E+++A +    A  ++ +     + + +    
Sbjct: 107 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166

Query: 666 KEIAL 670
           K+   
Sbjct: 167 KQKLY 171

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 8e-15
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ +RG       +   AI+DL +AL     +  I ++   + FK           
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE------ 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                           +    +   E+KKAEE    A  +                  + 
Sbjct: 122 ------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSK 157

Query: 567 SEKALECLQQVLYIDKR 583
            +KA+EC+ +    +  
Sbjct: 158 IDKAMECVWKQKLYEPV 174

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           +  AI+   E       ++W  A+    ++      I    N    Y+ L+      +  
Sbjct: 2   LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAF 59

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            +++  D  L  AY  +G  +    + + A+   ++    
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 68.5 bits (167), Expect = 4e-13
 Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 1/119 (0%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G+ ++A E  ++AI+             +      + E+A E L Q + +   +      
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
              L+      K   +  ++   +     +    +  +      +Y +  +      +L
Sbjct: 70  LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 457 QARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           Q + AL  G+  +A++ L +A++  P  A +      +     DF  A E L   +KL  
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALEC 573
           E     + L   + +    K   +    A  L  N  L              + E+  E 
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 574 LQQVLYIDKRFSKAYHLRG 592
             Q+  + +      +   
Sbjct: 122 ALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 5e-11
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 1/136 (0%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           ++EG+   A+ +  + +K  P                 + E A     ++I+  P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACV 510
             +      A     +  Q  + A                 ++   +D+    E      
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 511 KLDKENKSAYTYLGLA 526
           +L +E          +
Sbjct: 127 ELRQEKGFLANDTSFS 142

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 6e-11
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 1/131 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           + +L+ A+    EAI+++P          +     G+   A + L ++++  P       
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
           +   +    +      +  +    L + E  +             +Y++  E  L+  +L
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Query: 547 DRNFLEAWGHL 557
            +         
Sbjct: 129 RQEKGFLANDT 139

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 8e-11
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 1/112 (0%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDF 438
               R S       +G +  A     Q +K  P Y           +A Q   + A    
Sbjct: 29  DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           T  +                     +  +  +   +  E       + ++  
Sbjct: 89  TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.2 bits (148), Expect = 9e-11
 Identities = 14/122 (11%), Positives = 40/122 (32%), Gaps = 1/122 (0%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
               A+E L   +K   ++ S  +     L   G++++A+E  +++I+L   +L     L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
               +     +   +       + +        +   L      +++  +       +  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 617 SN 618
             
Sbjct: 131 EK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 558 TQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615
           TQ+   L+    ++ALE L + +    + +        LL   G  ++A + L   + + 
Sbjct: 1   TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

Query: 616 PSNIECLYLRASCYHAIGEYREAIKDYDAALDLE 649
           P  +           A    ++  +    A  L 
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLG 94

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 68.8 bits (166), Expect = 8e-13
 Identities = 42/315 (13%), Positives = 87/315 (27%), Gaps = 41/315 (13%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-----MYPEALIGRGTARAFQR 429
           +  ++  +F   R    +N+G    A  +    L+E P         A    G     + 
Sbjct: 6   REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65

Query: 430 ELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--- 480
           EL  +++   +  Q          A  +  ++ +   A G    A +   KA +      
Sbjct: 66  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125

Query: 481 -----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-----AYTYLGLALSSI 530
                    ++  R  + + +   + A     + +++    +          L     + 
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 531 GEYKKAEEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           G+   A     +   L  N          A      ++Q   +   A   L+     +  
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245

Query: 584 FSKA----YHLRGLLLHGLGQHKKAIKDLSSGL------GIDPSNIECLYLRASCYHAIG 633
            +      +         LG+ + A   L           +       L L    Y   G
Sbjct: 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 634 EYREAIKDYDAALDL 648
              +A +    AL L
Sbjct: 306 RKSDAQRVLLDALKL 320

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (125), Expect = 1e-07
 Identities = 34/252 (13%), Positives = 64/252 (25%), Gaps = 31/252 (12%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNF 494
           + I+ +    E    R Q     G   EA +    ALE  P              G V  
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 495 KFKDFNAAVEDLSACVKLDKENKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              +   ++  +    ++ +++        +       L + G  + A E   KA QL  
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 549 NFL--------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--- 597
                             Q     A  ++A    +  + +   +     L+ L +     
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182

Query: 598 ---------LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDL 648
                      Q  +    L +G            +R   +   G+   A          
Sbjct: 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 242

Query: 649 ELDSMEKFVLQC 660
           E  +      Q 
Sbjct: 243 EFANNHFLQGQW 254

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (105), Expect = 3e-05
 Identities = 24/187 (12%), Positives = 43/187 (22%), Gaps = 38/187 (20%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRR 455
             ++             A   R        +  AA +      +    +N      W+  
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
            +A+  LGE   A   L +  E   +   +                              
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-------------------------- 291

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEK 569
                  L       G    A+   L A++L        +F+     + Q  + L     
Sbjct: 292 --RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 349

Query: 570 ALECLQQ 576
             E  Q 
Sbjct: 350 LPELEQH 356

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---- 522
                L          ++    R I      D  AA   L    K +  N          
Sbjct: 197 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256

Query: 523 LGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
           +  A   +GE++ AE    +        +L  +       L Q Y        A   L  
Sbjct: 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316

Query: 577 VLYIDKR 583
            L +  R
Sbjct: 317 ALKLANR 323

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY---QDLANSEKALECLQQVLYIDK 582
            L S+ +  K E+                          +   +  K +  L+++L    
Sbjct: 8   ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS 67

Query: 583 --RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
                       +  + L +++KA+K +   L  +P N +   L      A+ 
Sbjct: 68  KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 5/107 (4%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA---AISDFTEAIQ--SNP 446
           V+          F        +               R  +     I    E +   S  
Sbjct: 10  VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
              +           L E  +A++ +   L+ EP +        +++
Sbjct: 70  EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 9e-06
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-----HLKAIQLDRNFL 551
           +D     +   +       +KS        L          +       L          
Sbjct: 13  EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +   +L      L   EKAL+ ++ +L  + + ++A  L  L+
Sbjct: 73  DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 11/110 (10%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---AVEDLSACVKLDKENK 517
           ++ + ++  +           S     E      + +  +     +  L   +    + +
Sbjct: 11  SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE 70

Query: 518 S--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                 YL +    + EY+KA +     +Q +    +A        + + 
Sbjct: 71  QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 1e-08
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQ 600
           AI+LD+ +++ +         L     AL   + V+ +      A         +     
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 601 HKKAI------KDLSSGLGIDPSNIECLY 623
            ++AI      + +   L I+   IE  Y
Sbjct: 130 FERAIAGDEHKRSVVDSLDIESMTIEDEY 158

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANS 567
           ++LDK+    Y     +  ++G+++ A   +   +++  +  +A                
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 568 EKALECLQQ 576
           E+A+   + 
Sbjct: 131 ERAIAGDEH 139

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 19/160 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             A I+ E+G V FK   +  AV      V                        +   + 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-------------------EMEYGLSE 53

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            ++   +   L A+ +L   Y  L    KA+EC  + L +D    K  + RG     + +
Sbjct: 54  KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 113

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIK 640
            + A  D    L ++P N         C     E+ E  +
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 19/158 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G      GKY  A+  + +                                 E+  S  
Sbjct: 21  KGTVYFKGGKYVQAVIQYGK-------------------IVSWLEMEYGLSEKESKASES 61

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+         L E  +A++   KAL  +  +   L+ RG       +F +A  D 
Sbjct: 62  FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
              ++++ +NK+A   + +      E+ + +      +
Sbjct: 122 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEF---------------EPNSADILHERGIVNF 494
              K +G      G+ V+A+    K + +               E           +   
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           K +++  AVE     + LD  N+      G A   + E++ A+    K ++++     A 
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 555 GHLTQFYQDLANSEKA 570
             +    +      + 
Sbjct: 136 LQIFMCQKKAKEHNER 151

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+  Y         +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 3e-07
 Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 15/126 (11%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG       ++  A + + KA +LD   +    +    Y +  +  K  E  ++ + + +
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 583 RFSKAYHL-------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
              + Y          G       ++K AI   +  L    +                + 
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP--------DVLKKCQQA 121

Query: 636 REAIKD 641
            + +K+
Sbjct: 122 EKILKE 127

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G     +  + +A+  +D+  + DP     +  +      + +         +AI+    
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

Query: 448 AGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
             E       A+ R G +     +  +AI   +K+L       D+L +
Sbjct: 71  NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 27/176 (15%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             ++D+ K L      ++ L   G   FK +++  A++  +  ++  + +++A       
Sbjct: 15  VDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA--- 67

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
                             +L    L    ++      +++ + A++   + L ID   +K
Sbjct: 68  ---------------DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
           A + R     GL ++ +A+ DL     I P +             I   ++  K  
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 16/132 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQI----------------LKEDPMYPEALIGRGTARAFQRE 430
            G        +  AI  + ++                 K  P+    ++  G  +    +
Sbjct: 33  IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E  
Sbjct: 93  WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152

Query: 491 IVNFKFKDFNAA 502
            V  K K     
Sbjct: 153 KVKQKIKAQKDK 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
           +D +  ++D+   + + ++ K+    +G        ++ A + + K ++       A   
Sbjct: 11  EDADVDLKDVDKILLISEDLKN----IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA-- 64

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
                                  +           G     +   + A+      L IDP
Sbjct: 65  ----------------EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108

Query: 617 SNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALY 671
           SN + LY RA  +  + EY +A+ D   A   E+   +K +   L   +++I   
Sbjct: 109 SNTKALYRRAQGWQGLKEYDQALADLKKA--QEIAPEDKAIQAELLKVKQKIKAQ 161

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
            A K  G   AA G   +A + LS AL                     D           
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV------------LDDLRDFQFVEPFA 59

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++   A+T    A  + G                      W  L   Y        
Sbjct: 60  TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119

Query: 570 ALECLQQV 577
           AL   ++V
Sbjct: 120 ALGAYRRV 127

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 22/122 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----------------------EAWK 453
            A    G   A     E A    + A++                             A  
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHT 71

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
            + +A  A G +   I +L       P    +  +     +     + A+          
Sbjct: 72  AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131

Query: 514 KE 515
            +
Sbjct: 132 AD 133

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 5e-07
 Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 33/235 (14%)

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALE------FEPNSADILHERGIVNFKFKDFNA 501
           A +   +         E   A     KA +       E  + +   E         +   
Sbjct: 36  AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95

Query: 502 AVEDLSACVKLDKENKSAYTYLGLAL-------SSIGEYKKAEEAHLKAIQLDRN----- 549
           AV+ L   +++                      + + +Y KA + +  A +         
Sbjct: 96  AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155

Query: 550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYHLRGLLLHGLGQH 601
              + +              +A +   +++                +  +GL        
Sbjct: 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215

Query: 602 KKAIKDLSSGLGIDPSNI---ECLYLRASC----YHAIGEYREAIKDYDAALDLE 649
             A + L  G   DP+     E  +L++           +  E  K++D  + L+
Sbjct: 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 23/198 (11%), Positives = 49/198 (24%), Gaps = 19/198 (9%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE 572
                        E   A ++ LKA    +           +    + ++   NS  A++
Sbjct: 39  LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHG-------------LGQHKKAIKDLSSGLGIDPSNI 619
            L+  + I     +                             +   +  +       + 
Sbjct: 99  SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158

Query: 620 ECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSE 679
           +C    A      G+Y EA   Y   +   + +          F +K +    A+   + 
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218

Query: 680 FCWFDIDGDIDPLFKEYW 697
                     DP F +  
Sbjct: 219 ARTLQEGQSEDPNFADSR 236

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 19/160 (11%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           + I+ ERG V FK   +  A+      V                        ++  ++ +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWL-------------------EYESSFSNEE 53

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           A +     L +  +L   +  L     A+E   + L +D    K    RG     +   +
Sbjct: 54  AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 113

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDY 642
            A  D    L + P+N       A C   I       K  
Sbjct: 114 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 153

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQI---------------LKEDPMYPEALIGRGTARAFQREL 431
           RG     EGKY  A+  + +I                K   +   + +         +  
Sbjct: 19  RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 78

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 79  SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138

Query: 492 VNFKFKDFNAAVEDL 506
              + +   A  + L
Sbjct: 139 CQQRIRRQLAREKKL 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.0 bits (105), Expect = 7e-06
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+      +      +     + L               
Sbjct: 15  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-------------- 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 61  ----KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 116

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 117 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQ----------------ILKEDPMYPEALIGRGTARAFQRE 430
            G     + +   AI  + +                + K+  +     +   T     ++
Sbjct: 23  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 82

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
              AI   ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   
Sbjct: 83  YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 142

Query: 491 IVNFKFKDFN 500
           +   K K+  
Sbjct: 143 LCVNKLKEAR 152

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 8e-06
 Identities = 21/106 (19%), Positives = 42/106 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   P
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             G+ + R+  A   L    EA +   + L+ E N+  +      +
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 22/108 (20%), Positives = 48/108 (44%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           V L  +    Y+    AL  +  +++A+  + + ++ + N  +    L
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 20/107 (18%), Positives = 44/107 (41%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G    S+G    A + + +AI+LD +    + + +  Y    + +KA E   + + +  
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
            + K Y  +   L  L + ++A +    GL  + +N +      +  
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-------YTYLGLALSSIGEYK 534
           +A+   E G V +   D+      +   ++   E + +         YL  A+   G+  
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           KA     K ++LD     A G+L  F   +A
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 15/161 (9%)

Query: 511 KLDKENKSAYTYLGLALSSI--GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
           K  KE   AY  L  A   +  GEY +A     +A+++              +    ++ 
Sbjct: 1   KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAG 60

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A   L  +   D+    A                  +            I  +Y RA  
Sbjct: 61  LAE-ALAGLRSFDEALHSADK----------ALHYFNRRGELNQDEGKLWISAVYSRALA 109

Query: 629 YHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKEIA 669
              +G   EA+ ++     +E+    K          +   
Sbjct: 110 LDGLGRGAEAMPEFKKV--VEMIEERKGETPGKERMMEVAI 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1050
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.83
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.79
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.77
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.59
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.57
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.55
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.44
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.42
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.4
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.4
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.39
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.38
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.33
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.32
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.25
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.1
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.01
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.97
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.95
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.9
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.89
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.56
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.51
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.21
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.15
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.17
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.05
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.89
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.25
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	85.35

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-34  Score=282.97  Aligned_cols=382  Identities=16%  Similarity=0.147  Sum_probs=317.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             9999943899999999999981137-917787899999971278999999999998099875699999999998599999
Q 001578           43 LAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (1050)
Q Consensus        43 ~~~~~~~g~y~~Ai~~y~~ai~~~~-n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~e  121 (1050)
                      +..+|+.|+|++|+..|+++++.+| ++..+.++|.+|+.+|++++|+..++++++++|++..+++.+|.+|..+|++++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             99999869999999999999986899899999999999986999999999999998599989999999999642000222


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf             99999999963037938689899999999999842111111000135777654567888898871110027997522223
Q 001578          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (1050)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~ll~l~~~~~~a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  201 (1050)
                      |+..++.+.+..+...............       .     ..                                     
T Consensus        86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~-------------------------------------  116 (388)
T d1w3ba_          86 AIEHYRHALRLKPDFIDGYINLAAALVA-------A-----GD-------------------------------------  116 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH-------H-----SC-------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------C-----CC-------------------------------------
T ss_conf             2222221211222222222222222222-------2-----22-------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44632100102689998887787644679987776666544588620000148899999886554566432234788875
Q 001578          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (1050)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~  281 (1050)
                                                    .     .                                           
T Consensus       117 ------------------------------~-----~-------------------------------------------  118 (388)
T d1w3ba_         117 ------------------------------M-----E-------------------------------------------  118 (388)
T ss_dssp             ------------------------------S-----S-------------------------------------------
T ss_pred             ------------------------------C-----C-------------------------------------------
T ss_conf             ------------------------------2-----2-------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68899987433323357678884444567546734577776441000112235689998077644345336877874259
Q 001578          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (1050)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~  361 (1050)
                                                                                                   .  
T Consensus       119 -----------------------------------------------------------------------------~--  119 (388)
T d1w3ba_         119 -----------------------------------------------------------------------------G--  119 (388)
T ss_dssp             -----------------------------------------------------------------------------H--
T ss_pred             -----------------------------------------------------------------------------C--
T ss_conf             -----------------------------------------------------------------------------2--


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99817888998511198769999999999999099799999999999959999999999999999907999999999999
Q 001578          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (1050)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a  441 (1050)
                          ............+.........+......+....+...+.+.+...|..+.++..+|..+...|++++|...+.++
T Consensus       120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  195 (388)
T d1w3ba_         120 ----AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA  195 (388)
T ss_dssp             ----HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             ----2222111222222222222222222211000135678888740258610689986363010247199999999999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99599919999999999999199999999999999619999999999999999849999999999999982799999999
Q 001578          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (1050)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  521 (1050)
                      ++.+|++..++..+|.++...|++++|+..++++....+.....+..+|.++...|++++|+..++++++.+|++..++.
T Consensus       196 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  275 (388)
T d1w3ba_         196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC  275 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             98494649999997155220052999999999857775547999999999999878999999999999984999899999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             99999998399999999999999727583999999999999828959999999999941799999999999999988997
Q 001578          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (1050)
Q Consensus       522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  601 (1050)
                      .+|.++...|++++|+..++.++...|.....+..++.++...|++++|+..++++++..|+++.++..+|.++..+|++
T Consensus       276 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  355 (388)
T d1w3ba_         276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf             99999997487999999998654048730010157999999878999999999999986889899999999999985999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             999999999881299999999999999999069
Q 001578          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (1050)
Q Consensus       602 ~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~  634 (1050)
                      ++|+..|+++++++|+++.++.++|.+|.++|+
T Consensus       356 ~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             999999999997099989999999999998589

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-32  Score=267.10  Aligned_cols=372  Identities=18%  Similarity=0.169  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             78999999712789999999999980998756999999999985999999999999996303793868989999999999
Q 001578           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA  152 (1050)
Q Consensus        73 ~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~~  152 (1050)
                      ..+|..+++.|++++|++.++++++.+|++..+++.+|.+|..+|++++|+..|++++++.|..+..+..+..+.     
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~-----   77 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY-----   77 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----
T ss_conf             999999998699999999999999868998999999999999869999999999999985999899999999996-----


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98421111110001357776545678888988711100279975222234463210010268999888778764467998
Q 001578          153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGS  232 (1050)
Q Consensus       153 a~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (1050)
                               ...                                                                    
T Consensus        78 ---------~~~--------------------------------------------------------------------   80 (388)
T d1w3ba_          78 ---------KER--------------------------------------------------------------------   80 (388)
T ss_dssp             ---------HHH--------------------------------------------------------------------
T ss_pred             ---------HHH--------------------------------------------------------------------
T ss_conf             ---------420--------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77766665445886200001488999998865545664322347888756889998743332335767888444456754
Q 001578          233 SVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLS  312 (1050)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (1050)
                                                                                                      
T Consensus        81 --------------------------------------------------------------------------------   80 (388)
T d1w3ba_          81 --------------------------------------------------------------------------------   80 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             67345777764410001122356899980776443453368778742599981788899851119876999999999999
Q 001578          313 SDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV  392 (1050)
Q Consensus       313 ~~~e~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  392 (1050)
                                                              +.....        ...........+.........+....
T Consensus        81 ----------------------------------------g~~~~A--------~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (388)
T d1w3ba_          81 ----------------------------------------GQLQEA--------IEHYRHALRLKPDFIDGYINLAAALV  112 (388)
T ss_dssp             ----------------------------------------TCHHHH--------HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ----------------------------------------CCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ----------------------------------------002222--------22222121122222222222222222


Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             90997999999999999599999999999999999079999999999999959991999999999999919999999999
Q 001578          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (1050)
Q Consensus       393 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l  472 (1050)
                      ..+.+..+...........+.........+......+....+...+.+.+...|....++..+|..+...+++++|...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  192 (388)
T d1w3ba_         113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF  192 (388)
T ss_dssp             HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             22222222222111222222222222222222211000135678888740258610689986363010247199999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99996199999999999999998499999999999999827999999999999999839999999999999972758399
Q 001578          473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (1050)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  552 (1050)
                      ++++..+|++..++..+|.++...|++++|+..++++....+.....+..+|.++...|++++|+..++++++.+|+++.
T Consensus       193 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  272 (388)
T d1w3ba_         193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD  272 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             99998494649999997155220052999999999857775547999999999999878999999999999984999899


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999998289599999999999417999999999999999889979999999998812999999999999999990
Q 001578          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (1050)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~  632 (1050)
                      ++..+|.++...|++++|+..++.++...|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.+|..+
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  352 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             99999999997487999999998654048730010157999999878999999999999986889899999999999985


Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             6999999999999974379978
Q 001578          633 GEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       633 g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      |++++|+.+|+++++++|++++
T Consensus       353 g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         353 GKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             TCCHHHHHHHHHHHTTCTTCHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHH
T ss_conf             9999999999999970999899

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-23  Score=199.46  Aligned_cols=258  Identities=19%  Similarity=0.202  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999999990997999999999999599999999999999999079999999999999959991999999999999
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      ....+.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.++++++|++...+..+|.++.
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             39999999999985999999999999998689989999999999998377588999998510022222222222222222


Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             91999999999999996199999999999999998499999999999999827999999999999999839999999999
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (1050)
Q Consensus       461 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l  540 (1050)
                      ..|++++|+..+++++...|...............                   ............+...+.+.+|+..+
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH-------------------CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             22211211100026777361067888766400000-------------------00100001478888765799999999


Q ss_pred             HHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             9999727583--99999999999982895999999999994179999999999999998899799999999988129999
Q 001578          541 LKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (1050)
Q Consensus       541 ~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~  618 (1050)
                      .+++..+|..  +.++..+|.++...|++++|+..+++++...|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99999713012221110368888888877550021112222222221110133301221111013788877899884324


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             999999999999906999999999999974379978889
Q 001578          619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFV  657 (1050)
Q Consensus       619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~  657 (1050)
                      +.+++.+|.+|..+|++++|+..|+++++++|++.....
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999999999999878999999999999970975700112

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.2e-23  Score=194.55  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             999999438999999999999811379-1778789999997127899999999999809987569999999999859999
Q 001578           42 ELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (1050)
Q Consensus        42 ~~~~~~~~g~y~~Ai~~y~~ai~~~~n-~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~  120 (1050)
                      ++..++..|+|++|+.+|+++|+.+|+ +..+.++|.++..+|++++|+..+.+|++++|++..+++.+|.+|..+|+++
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999985999999999999998689989999999999998377588999998510022222222222222222222112


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q 001578          121 EALSVWEKGY  130 (1050)
Q Consensus       121 eA~~~~~~al  130 (1050)
                      +|+..+++++
T Consensus       105 ~A~~~~~~~~  114 (323)
T d1fcha_         105 QACEILRDWL  114 (323)
T ss_dssp             HHHHHHHHHH
T ss_pred             CCCCCHHHHH
T ss_conf             1110002677

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-20  Score=173.80  Aligned_cols=205  Identities=16%  Similarity=0.157  Sum_probs=152.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             98769999999999999099799999999999959999999999999999907-99999999999999599919999999
Q 001578          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRR  455 (1050)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l  455 (1050)
                      .|...+++..+|.++...+.+++|+..++++++.+|.+..+|..+|.++...+ ++++|+..+.++++.+|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97799999999999995886699999999999879887699999999999837679999999999998877422689887


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---
Q ss_conf             99999919999999999999961999999999999999984999999999999998279999999999999998399---
Q 001578          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE---  532 (1050)
Q Consensus       456 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---  532 (1050)
                      |.++..+|++++|+..+.+++.++|.+..++..+|.++...+++++|+..++++++++|.+..+|.++|.++...+.   
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf             58888505378899887555432100468899887788888866789999999998797449999889999987456310


Q ss_pred             ---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             ---99999999999972758399999999999982895999999999994179
Q 001578          533 ---YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (1050)
Q Consensus       533 ---~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  582 (1050)
                         +++|+..+.++++.+|.+..+|..++.++... ...++...++.++++.|
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~  250 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQP  250 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCC
T ss_conf             23547767999999984988569999987798862-71889999999997287

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-19  Score=166.58  Aligned_cols=260  Identities=15%  Similarity=0.169  Sum_probs=174.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             9599999999999999999079999999999999959991999999999999919-999999999999961999999999
Q 001578          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILH  487 (1050)
Q Consensus       409 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~  487 (1050)
                      ..+|+..+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...+ ++++|+..+++++..+|++..++.
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             26977999999999999958866999999999998798876999999999998376799999999999988774226898


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-
Q ss_conf             9999999849999999999999982799999999999999983999999999999997275839999999999998289-
Q 001578          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN-  566 (1050)
Q Consensus       488 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~-  566 (1050)
                      .+|.++..+|++++|+..+.++++++|.+..+|..+|.++...+++++|+..+.++++++|.+..+|.++|.++...+. 
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf             87588885053788998875554321004688998877888888667899999999987974499998899999874563


Q ss_pred             -----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHH
Q ss_conf             -----5999999999994179999999999999998899799999999988129999--999999999999906999999
Q 001578          567 -----SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN--IECLYLRASCYHAIGEYREAI  639 (1050)
Q Consensus       567 -----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~  639 (1050)
                           +++|+..+.+++...|.+..++..++.++...+ ..++...++.++++.|..  ..++..++.+|..        
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~--------  267 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED--------  267 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--------
T ss_conf             10235477679999999849885699999877988627-188999999999728775789999999999999--------


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHCCCCCCHHHHHHHC
Q ss_conf             9999999743799788899999999999999993089999999998-4302999899998413
Q 001578          640 KDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDI-DGDIDPLFKEYWCKRL  701 (1050)
Q Consensus       640 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~-a~~l~p~~~e~w~~r~  701 (1050)
                           ..+..++...                   ..+++|...+.. +..+||-...||..+.
T Consensus       268 -----~~~~~~~~~~-------------------~~~~ka~~l~~~l~~~~DpiR~~yw~~~~  306 (315)
T d2h6fa1         268 -----MLENQCDNKE-------------------DILNKALELCEILAKEKDTIRKEYWRYIG  306 (315)
T ss_dssp             -----HHHTTCSSHH-------------------HHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             -----HHHCCHHHHH-------------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             -----9835878799-------------------99999999999987714988999999999

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.8e-20  Score=174.00  Aligned_cols=263  Identities=11%  Similarity=0.013  Sum_probs=235.4

Q ss_pred             HCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             909-979999999999995999999999999999990----------799999999999999599919999999999999
Q 001578          393 NEG-KYASAISIFDQILKEDPMYPEALIGRGTARAFQ----------RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (1050)
Q Consensus       393 ~~g-~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (1050)
                      ..+ ..++|+.++++++..+|++..+|..++.++...          +.+++|+.+++++++.+|++..++..+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             65656699999999999988785899999999999976500347787789999999999998688867989886489988


Q ss_pred             CCC--HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             199--9999999999996199999999-9999999984999999999999998279999999999999998399999999
Q 001578          462 LGE--SVEAIQDLSKALEFEPNSADIL-HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (1050)
Q Consensus       462 ~g~--~~~A~~~l~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~  538 (1050)
                      .++  +++|+..+++++..+|.+...+ ...|.++...+.+++|+..+++++..+|.+..++..+|.++..+|++++|+.
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             43042899999999998559212111105789998744552899999999887189879999999999998268898999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99999972758399999999999982895999999999994179999999999999998899799999999988129999
Q 001578          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (1050)
Q Consensus       539 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~  618 (1050)
                      .+.+++...|.....+.    .+...+..+++...+.+++...|.....+..++.++...+++.+|+..+.+++..+|.+
T Consensus       200 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  275 (334)
T d1dcea1         200 QGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC  275 (334)
T ss_dssp             CCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             88776776899999999----99882441488999998877186605678879999999866999999999887629137


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             99999999999990699999999999997437997888999
Q 001578          619 IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQ  659 (1050)
Q Consensus       619 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~  659 (1050)
                      ..++..+|.++..+|++++|+.+|+++++++|+....+..+
T Consensus       276 ~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         276 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             HHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999999878999999999999998796639999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.5e-16  Score=141.44  Aligned_cols=273  Identities=15%  Similarity=0.057  Sum_probs=226.1

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------
Q ss_conf             769999999999999099799999999999959999-----999999999999907999999999999995999------
Q 001578          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------  447 (1050)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------  447 (1050)
                      ..++....+|.+++..|++++|+..++++++..|.+     ..++..+|.++...|++++|+..+.+++...+.      
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             13999999999999888999999999999854868996799999999999999879999999999999999875011489


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---
Q ss_conf             1999999999999919999999999999961999--------99999999999998499999999999999827999---
Q 001578          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---  516 (1050)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  516 (1050)
                      ....+..++.++...|++..+...+.+++.+.+.        ....+..+|.++...|+++.+...+.+++...+..   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  169 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  169 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999888788788888999998899999986750341256788899888789998145666689999988876630024


Q ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---
Q ss_conf             --999999999999839999999999999972758-------39999999999998289599999999999417999---
Q 001578          517 --KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---  584 (1050)
Q Consensus       517 --~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  584 (1050)
                        ...+...+..+...+.+.++...+.++......       ...++..++.++...+++++|...+++++...+..   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf             68999988888887646678888999999999987311572699999999999986044898999999999762246667


Q ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             -999999999999889979999999998812------9999999999999999906999999999999974379
Q 001578          585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI------DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELD  651 (1050)
Q Consensus       585 -~~~~~~la~~~~~~g~~~eAl~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~  651 (1050)
                       ...+..+|.++...|++++|+..+++++..      .|....++..+|.+|...|++++|+..+++++++.+.
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             77889999999987587999999999999887642667479999999999999878999999999999997653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=5e-19  Score=164.06  Aligned_cols=259  Identities=11%  Similarity=0.004  Sum_probs=186.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             79999999999999959991999999999999919----------99999999999996199999999999999998499
Q 001578          429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG----------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (1050)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~  498 (1050)
                      +..++|+..++++++.+|++..+|..++.++..++          ++.+|+.++++++..+|++..++..+|.++...++
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf             56699999999999988785899999999999976500347787789999999999998688867989886489988430


Q ss_pred             --HHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             --9999999999998279999999-9999999983999999999999997275839999999999998289599999999
Q 001578          499 --FNAAVEDLSACVKLDKENKSAY-TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ  575 (1050)
Q Consensus       499 --~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  575 (1050)
                        +++|+..+.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..++.++|.++...|++++|...+.
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~  202 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             42899999999998559212111105789998744552899999999887189879999999999998268898999887


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             99941799999999999999988997999999999881299999999999999999069999999999999743799788
Q 001578          576 QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEK  655 (1050)
Q Consensus       576 ~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~  655 (1050)
                      +++...|.....+.    .+...+..+++...+.+++...|.....+..++.++...+++.+|+..+.+++..+|++.. 
T Consensus       203 ~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-  277 (334)
T d1dcea1         203 LPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL-  277 (334)
T ss_dssp             SCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH-
T ss_pred             HHHHHHHHHHHHHH----HHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_conf             76776899999999----9988244148899999887718660567887999999986699999999988762913799-


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             8999999999999999930899999999984302999899998
Q 001578          656 FVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYWC  698 (1050)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w~  698 (1050)
                            .++.+|.++...+++++|+.+|+++.+++|....||.
T Consensus       278 ------~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~  314 (334)
T d1dcea1         278 ------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  314 (334)
T ss_dssp             ------HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             ------9999999998789999999999999987966399999

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.3e-16  Score=144.98  Aligned_cols=114  Identities=24%  Similarity=0.163  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999909979999999999995999999999999999990799999999999999599919999999999999
Q 001578          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (1050)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (1050)
                      ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++++|++..++..+|.++..
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999879999999999985434999889996004278887778875234468999876111158889999998


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             1999999999999996199999999999999998
Q 001578          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (1050)
Q Consensus       462 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~  495 (1050)
                      +|++++|+..++++++..|.+......++..+..
T Consensus       118 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             7667999999999986530007888999999988

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=9.6e-17  Score=145.91  Aligned_cols=225  Identities=19%  Similarity=0.194  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             7999999999999599----999999999999999079999999999999959991999999999999919999999999
Q 001578          397 YASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (1050)
Q Consensus       397 ~~~Ai~~~~~al~~~p----~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l  472 (1050)
                      .+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++..+|++++|+..|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             99999999999876336999999999999999998799999999999854349998899960042788877788752344


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             99996199999999999999998499999999999999827999999999999999839999999999999972758399
Q 001578          473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (1050)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  552 (1050)
                      ++++.++|+++.++..+|.++...|++++|+..++++++.+|.+......++......+....+...........+....
T Consensus        95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (259)
T d1xnfa_          95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG  174 (259)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             68999876111158889999998766799999999998653000788899999998853587899999876403144434


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999998289599999999999417999999999999999889979999999998812999999999999999990
Q 001578          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (1050)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~  632 (1050)
                      .  .+...+  .+..                            ...+....+...+.......|....+++.+|.+|..+
T Consensus       175 ~--~~~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~  222 (259)
T d1xnfa_         175 W--NIVEFY--LGNI----------------------------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL  222 (259)
T ss_dssp             H--HHHHHH--TTSS----------------------------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             H--HHHHHH--HHHH----------------------------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf             5--577888--8887----------------------------7777899999999986640845099999999999987


Q ss_pred             CCHHHHHHHHHHHHHHCCCCH
Q ss_conf             699999999999997437997
Q 001578          633 GEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       633 g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      |++++|+.+|++++..+|++.
T Consensus       223 g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         223 GDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             TCHHHHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHHHHHHHCCCCCH
T ss_conf             899999999999998399779

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2e-14  Score=127.46  Aligned_cols=24  Identities=4%  Similarity=-0.248  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             899999971278999999999998
Q 001578           74 NRAFCYSQLELHKHVIRDCDKALQ   97 (1050)
Q Consensus        74 nrA~~~~~lg~~~~Ai~~~~~AL~   97 (1050)
                      ++|.+|..+|++++|+..++++++
T Consensus        56 ~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          56 VLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999999987999999999999999

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.9e-15  Score=135.62  Aligned_cols=134  Identities=13%  Similarity=0.052  Sum_probs=64.4

Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             90997999999999999599999999999999999079999999999999959991999999999999919999999999
Q 001578          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (1050)
Q Consensus       393 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l  472 (1050)
                      ..+.|..|+..+.+++..+|.+..++..+|..+...++++.|+..+.+++..++  ..++..+|.++...+++++|+.+|
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y  175 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             999999999999998789911399999857998758999999999998827889--999999999999802478999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99996199999999999999998499999999999999827999999999999999
Q 001578          473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (1050)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  528 (1050)
                      ++++.+.|+++..++.+|.++...|++.+|+.+|.+++...|..+.++.+++.++.
T Consensus       176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99998789965999999999998699999999999998179997899999999998

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=8.9e-12  Score=106.45  Aligned_cols=237  Identities=11%  Similarity=-0.045  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999999959999999999999999907999999999999995999199999999999991999999999999996
Q 001578          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (1050)
Q Consensus       398 ~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  477 (1050)
                      ..+...|++++...|.++..|+..+..+...++.                    ....+......+..++|...+++++.
T Consensus        33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~i~~ral~   92 (308)
T d2onda1          33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL--------------------LAEKGDMNNAKLFSDEAANIYERAIS   92 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------HHHTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH--------------------HHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9999999999987779999999999999870736--------------------88777876310245999999999998


Q ss_pred             H-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             1-999999999999999984999999999999998279999-99999999999839999999999999972758399999
Q 001578          478 F-EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (1050)
Q Consensus       478 ~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~  555 (1050)
                      . .|.+..++..++.++...|+++.|...+++++...|.+. .++..++......++++.|...|.++++..|.....+.
T Consensus        93 ~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~  172 (308)
T d2onda1          93 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  172 (308)
T ss_dssp             TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             74998799999999999861338999999999998715786999999999999827868899999999980888679999


Q ss_pred             HHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHH
Q ss_conf             9999999-82895999999999994179999999999999998899799999999988129999----999999999999
Q 001578          556 HLTQFYQ-DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----IECLYLRASCYH  630 (1050)
Q Consensus       556 ~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~----~~~~~~la~~~~  630 (1050)
                      ..+.... ..|+.+.|...|++++...|.++..+...+..+...|+++.|...|++++...|.+    ...|........
T Consensus       173 ~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999987655778999999999986100388999999999986986899999999998278986899999999999999


Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             906999999999999974379978
Q 001578          631 AIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       631 ~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ..|+.+.+...++++.++.|+...
T Consensus       253 ~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         253 NIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             849999999999999987711022

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.4e-11  Score=104.93  Aligned_cols=195  Identities=10%  Similarity=-0.090  Sum_probs=160.4

Q ss_pred             CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             49999999999999982-79999999999999998399999999999999727583-99999999999982895999999
Q 001578          496 FKDFNAAVEDLSACVKL-DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALEC  573 (1050)
Q Consensus       496 ~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~  573 (1050)
                      .+..++|...+++++.. .|.+...+..++......|+++.|...+++++...|.+ ..+|..++......++++.|...
T Consensus        77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             02459999999999987499879999999999986133899999999999871578699999999999982786889999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99999417999999999999999-88997999999999881299999999999999999069999999999999743799
Q 001578          574 LQQVLYIDKRFSKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       574 ~~~al~~~p~~~~~~~~la~~~~-~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      |.+++...|.....+...+.... ..|+.+.|...|++++...|.++..+...+..+...|+++.|...|++++...|.+
T Consensus       157 ~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999808886799999999998765577899999999998610038899999999998698689999999999827898


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf             78889999999999999999308999999999843029998
Q 001578          653 MEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLF  693 (1050)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~l~p~~  693 (1050)
                      ++.....   |..-.......|+.+.+...++++.+..|..
T Consensus       237 ~~~~~~i---w~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         237 PEKSGEI---WARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGGCHHH---HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             6899999---9999999998499999999999999877110

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.8e-15  Score=131.75  Aligned_cols=228  Identities=9%  Similarity=0.018  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999599999999999999999079999999999999959991999999999999919999999999999961
Q 001578          399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (1050)
Q Consensus       399 ~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  478 (1050)
                      +|+++|++++...|+.+.++..+|.++...+++++|   |++++..+|+....+...+.+.  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC
T ss_conf             999999999871999799995199999997629999---9999874930199985799999--99999999999985616


Q ss_pred             CC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99--9-99999999999998499999999999999827999999999999999839999999999999972758399999
Q 001578          479 EP--N-SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (1050)
Q Consensus       479 ~p--~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~  555 (1050)
                      ..  . .......++.+....+.|+.|+..+.+++.++|.+...+..+|..+...+++++|+..+.+++..++  ..++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~  156 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV  156 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHH
T ss_conf             4584379999999999999999999999999998789911399999857998758999999999998827889--99999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf             999999982895999999999994179999999999999998899799999999988129999999999999999906
Q 001578          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (1050)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g  633 (1050)
                      ++|.++...+++++|+.+|++++.+.|++...++.+|.++...|++.+|+.+|.+++...|..+.++.+++.++....
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999980247899999999998789965999999999998699999999999998179997899999999998753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.8e-12  Score=110.47  Aligned_cols=165  Identities=15%  Similarity=0.077  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC------CH
Q ss_conf             99999999998499999999999999827999------9999999999998-39999999999999972758------39
Q 001578          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSS-IGEYKKAEEAHLKAIQLDRN------FL  551 (1050)
Q Consensus       485 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~-~g~~~eA~~~l~~al~~~p~------~~  551 (1050)
                      .+..+|.+|...|++++|+..+++++.+.+..      ..++..+|.++.. .|++++|+..+++++++.+.      ..
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             99999999998088588899999766776532532058999999888676478789999889999999987337603334


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH----
Q ss_conf             9999999999982895999999999994179999-------99999999999889979999999998812999999----
Q 001578          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE----  620 (1050)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~----  620 (1050)
                      .++.++|.++...|++++|+..|++++...+...       ..+...+.++...+++..|...++++++.+|....    
T Consensus       159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~  238 (290)
T d1qqea_         159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES  238 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             68899999999817399999999999986813324555699999999999998465999999999999759774443999


Q ss_pred             -HHHHHHHHHHH--CCCHHHHHHHHHHHHHHC
Q ss_conf             -99999999999--069999999999999743
Q 001578          621 -CLYLRASCYHA--IGEYREAIKDYDAALDLE  649 (1050)
Q Consensus       621 -~~~~la~~~~~--~g~~~eA~~~~~~al~l~  649 (1050)
                       ....+..++..  .+.+.+|+..|.++.+++
T Consensus       239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf             99999999998368999999999998875468

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.5e-12  Score=112.70  Aligned_cols=64  Identities=14%  Similarity=0.004  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999999998399999999999999727583-------99999999999982895999999999994179
Q 001578          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (1050)
Q Consensus       519 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  582 (1050)
                      ++..+|.++..+|++++|+..+++++...+..       ...+...+.++...+++..|...++++++.+|
T Consensus       160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf             88999999998173999999999999868133245556999999999999984659999999999997597

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.5e-11  Score=102.88  Aligned_cols=129  Identities=22%  Similarity=0.231  Sum_probs=67.7

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Q ss_conf             99999998399999999999999727583999999999999828959999999999941799999999999999988997
Q 001578          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (1050)
Q Consensus       522 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  601 (1050)
                      +.|..+...|++++|+..|.+   +.+.++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             999999987799999999986---48988999999999999858914678789999998552346678899999854249


Q ss_pred             HHHHHHHHHHHHCCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf             9999999998812999----------------999999999999990699999999999997437997
Q 001578          602 KKAIKDLSSGLGIDPS----------------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDSM  653 (1050)
Q Consensus       602 ~eAl~~l~~al~~~p~----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~  653 (1050)
                      ++|+..|++++...+.                ..++++++|.++..+|++++|.+.+.+++.+.|+..
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999867267367899866543630588999999999997899999999999983699804

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.44  E-value=1.6e-11  Score=104.35  Aligned_cols=122  Identities=19%  Similarity=0.075  Sum_probs=104.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-----------------CHHHHHHHHHHHHHHCHHHH
Q ss_conf             2446678888999999999999438999999999999811379-----------------17787899999971278999
Q 001578           26 LVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----------------IQDICNRAFCYSQLELHKHV   88 (1050)
Q Consensus        26 ~~~~~~~~~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~~n-----------------~~~~~nrA~~~~~lg~~~~A   88 (1050)
                      .+..++.+..+.+.+.+|+.+|..|+|.+|+..|++|+...+.                 ..++.|+|.||+++|++.+|
T Consensus         7 ~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~A   86 (153)
T d2fbna1           7 DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA   86 (153)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             09889999999999999999999599999999999877607300111057788763107889996199999984653011


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99999999809987569999999999859999999999999963037938689899999
Q 001578           89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE  147 (1050)
Q Consensus        89 i~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~  147 (1050)
                      +.+|++||+++|+++++++++|.+|..+|++++|+..|++++++.|+.+.....+..+.
T Consensus        87 l~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          87 IDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             10100010000000124677689999968999999999999982989899999999999

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2e-11  Score=103.66  Aligned_cols=118  Identities=18%  Similarity=0.269  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             66788889999999999994389999999999998113-79177878999999712789999999999980998756999
Q 001578           29 VDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI  107 (1050)
Q Consensus        29 ~~~~~~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~-~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~  107 (1050)
                      .++-...+.+.+.+++.+|+.|+|++|+.+|++++..+ .++..+.++|.+|+.+|++.+|+..|++||+++|++..+++
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~   82 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   82 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf             85899999999999999999589999999866021100011333245678887405421288889999987544668779


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999985999999999999996303793868989999
Q 001578          108 LKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (1050)
Q Consensus       108 ~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l  146 (1050)
                      .+|.++..+|++++|+..|++++.+.|..+.....+.++
T Consensus        83 ~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          83 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             999999994999999998999987299979999999999

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=2.4e-12  Score=111.03  Aligned_cols=103  Identities=22%  Similarity=0.340  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             889999999999994389999999999998113-7917787899999971278999999999998099875699999999
Q 001578           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (1050)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~-~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~  112 (1050)
                      |.+...+.+|+.+|..|+|++|+..|++||..+ .++..|+++|.||+++|++++|+..|++||+++|+++.+|+.+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             64999999999999869999999999999985999899998178987410000012478888887188738999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             998599999999999999630379
Q 001578          113 FSALGRKEEALSVWEKGYEHALHQ  136 (1050)
Q Consensus       113 y~~lg~~~eA~~~~~~al~~~~~~  136 (1050)
                      |..+|++++|+..|++++++.|..
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf             998799999999999998749556

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.2e-11  Score=101.10  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=101.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC----------------HHHHHHHHHHHHHHCHHHHH
Q ss_conf             24466788889999999999994389999999999998113791----------------77878999999712789999
Q 001578           26 LVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEI----------------QDICNRAFCYSQLELHKHVI   89 (1050)
Q Consensus        26 ~~~~~~~~~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~~n~----------------~~~~nrA~~~~~lg~~~~Ai   89 (1050)
                      -+..++.+..+...+..|+.+|..|+|++|+.+|+++|...+..                ..+.|+|.||+++|++.+|+
T Consensus         3 ~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~   82 (170)
T d1p5qa1           3 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI   82 (170)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999999999999999699999999999998875101000357776406467999999999988642110110


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9999999809987569999999999859999999999999963037938689899999
Q 001578           90 RDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE  147 (1050)
Q Consensus        90 ~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~  147 (1050)
                      ..+++||+++|+++.+++++|.+|..+|++++|+..|++++++.|+.+.....+..+.
T Consensus        83 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          83 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             0000001002231034677799998722299999999999972989899999999999

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.40  E-value=4.2e-09  Score=85.22  Aligned_cols=228  Identities=17%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999999999990997999999999999599999999999999999----07999999999999995999199999999
Q 001578          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (1050)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (1050)
                      +..++.+|..++..+++.+|+.+|+++.+.  .+..+.+.+|.+|..    ..++..|..++..+...  .++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--CCCCHHHCCC
T ss_conf             899999999999877999999999999978--999999999999980999605699998750122211--1111231350


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCC
Q ss_conf             9999919999999999999961999999999999999984999999999999998279999999999999998----399
Q 001578          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGE  532 (1050)
Q Consensus       457 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~  532 (1050)
                      .++.....                              ...+.+.|...++.+....  ...+...++..+..    ...
T Consensus        78 ~~~~~~~~------------------------------~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~  125 (265)
T d1ouva_          78 NLYYSGQG------------------------------VSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD  125 (265)
T ss_dssp             HHHHHTSS------------------------------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCCCCCC------------------------------CCHHHHHHHHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCH
T ss_conf             12243211------------------------------2123677988876554321--466887634332378733101


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHH
Q ss_conf             9999999999997275839999999999998----2895999999999994179999999999999998----8997999
Q 001578          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKA  604 (1050)
Q Consensus       533 ~~eA~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA  604 (1050)
                      ...+...+.+...  +.....+..+|..+..    ..+...+...++.+.+  ..++.+...+|.++..    ..++++|
T Consensus       126 ~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         126 FKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHHHHHHHHHC--CCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHH
T ss_conf             5778887555200--111010445555640688743342200012211323--222233221131212676543103444


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCC
Q ss_conf             999999881299999999999999999----0699999999999997437
Q 001578          605 IKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLEL  650 (1050)
Q Consensus       605 l~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p  650 (1050)
                      +.+|+++.+.  +++.+.+.+|.+|..    ..++.+|.++|+++.+...
T Consensus       202 ~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         202 LARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             5467665303--68999999999998399976189999999999998769

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.39  E-value=5e-09  Score=84.59  Aligned_cols=228  Identities=17%  Similarity=0.167  Sum_probs=173.9

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             199999999999991999999999999996199999999999999998----4999999999999998279999999999
Q 001578          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYL  523 (1050)
Q Consensus       448 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  523 (1050)
                      ++.+++.+|..+...+++.+|+.+|+++.+.  .+..+.+.+|.+|..    ..++..|..+++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--CCCCHHHCC
T ss_conf             9899999999999877999999999999978--999999999999980999605699998750122211--111123135


Q ss_pred             HHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             999998----3999999999999997275839999999999998----28959999999999941799999999999999
Q 001578          524 GLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (1050)
Q Consensus       524 a~~~~~----~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  595 (1050)
                      |.++..    ..+.+.|...++.+....+  ..+...++..+..    ......+...+.....  +.....+..+|.++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~  152 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
T ss_conf             01224321121236779888765543214--668876343323787331015778887555200--11101044555564


Q ss_pred             HH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             98----8997999999999881299999999999999999----069999999999999743799788899999999999
Q 001578          596 HG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE  667 (1050)
Q Consensus       596 ~~----~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~~  667 (1050)
                      ..    ..+...+..+++.+.+  +.++.+.+.+|.+|..    ..++++|+.+|+++.+..  ++.       +.+.+|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~-------a~~~LG  221 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGG-------GCFNLG  221 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHCCCC--CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CHH-------HHHHHH
T ss_conf             0688743342200012211323--22223322113121267654310344454676653036--899-------999999


Q ss_pred             HHHHH----HCCHHHHHHHHHHHHCCCCCCH
Q ss_conf             99999----3089999999998430299989
Q 001578          668 IALYT----ASKINSEFCWFDIDGDIDPLFK  694 (1050)
Q Consensus       668 ~~~~~----~~~~~~A~~~l~~a~~l~p~~~  694 (1050)
                      ..++.    ..++.+|+.+|+++.+....-.
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A  252 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  252 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf             9998399976189999999999998769999

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-10  Score=96.90  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999943899999999999981137917787899999971278999999999998099875699999999998
Q 001578           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (1050)
Q Consensus        36 ~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~  115 (1050)
                      ++....++..++..|+|++|++.|+++  ..+++..++|+|.+|+.+|++++|+..|++||+++|+++.+|+.+|.+|..
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999877999999999864--898899999999999985891467878999999855234667889999985


Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             59999999999999
Q 001578          116 LGRKEEALSVWEKG  129 (1050)
Q Consensus       116 lg~~~eA~~~~~~a  129 (1050)
                      +|++++|+..|+++
T Consensus        83 ~g~~~~A~~~~~kA   96 (192)
T d1hh8a_          83 TEKYDLAIKDLKEA   96 (192)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHH
T ss_conf             42499999999999

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.38  E-value=7e-11  Score=99.32  Aligned_cols=125  Identities=18%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC----------------CHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             446678888999999999999438999999999999811379----------------1778789999997127899999
Q 001578           27 VRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE----------------IQDICNRAFCYSQLELHKHVIR   90 (1050)
Q Consensus        27 ~~~~~~~~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~~n----------------~~~~~nrA~~~~~lg~~~~Ai~   90 (1050)
                      +..++....+...+..|+.+|..|+|.+|+.+|++||...+.                ...|.|+|.||+++|++.+|+.
T Consensus         6 m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~   85 (168)
T d1kt1a1           6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE   85 (168)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             99999999999999999999995999999999999999998750012455531064679999849999877622011000


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999998099875699999999998599999999999999630379386898999999999
Q 001578           91 DCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLT  151 (1050)
Q Consensus        91 ~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~~~~  151 (1050)
                      +|+++|+++|++.++++++|.+|..+|++++|+..|++++++.|+.+.....+..+.....
T Consensus        86 ~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          86 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             2232220131048899988999988278999999999999859898999999999999998

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.8e-11  Score=101.43  Aligned_cols=110  Identities=20%  Similarity=0.205  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999999999994389999999999998113-7917787899999971278999999999998099875699999999998
Q 001578           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA  115 (1050)
Q Consensus        37 ~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~-~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~  115 (1050)
                      ...+.+++.+|..|+|++|+.+|+++|..+ .++..+.++|.+|+.+|++.+|+..++++++++|++..+|+.+|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999999969999999999998861996013430001101100001121001346777402202677889999998


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5999999999999996303793868989999
Q 001578          116 LGRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (1050)
Q Consensus       116 lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l  146 (1050)
                      +|++++|+..|++++++.|..+.....+-.+
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             1279999999999998498989999999978

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.1e-10  Score=94.21  Aligned_cols=98  Identities=20%  Similarity=0.315  Sum_probs=39.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             99999982895999999999994179999999999999998899799999999988129999999999999999906999
Q 001578          557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR  636 (1050)
Q Consensus       557 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~  636 (1050)
                      .|..++..|+|++|+..|++++..+|+++.+|.++|.++..+|++++|+..|+++++++|++..++..+|.++..+|+++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf             99999995899999998660211000113332456788874054212888899999875446687799999999949999


Q ss_pred             HHHHHHHHHHHHCCCCHH
Q ss_conf             999999999974379978
Q 001578          637 EAIKDYDAALDLELDSME  654 (1050)
Q Consensus       637 eA~~~~~~al~l~p~~~~  654 (1050)
                      +|+.++++++.++|+++.
T Consensus        96 eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHCCCCCHH
T ss_conf             999989999872999799

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=1.8e-10  Score=96.14  Aligned_cols=123  Identities=20%  Similarity=0.278  Sum_probs=96.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----------------CCCHHHHHHHHHHHHHHCHHHH
Q ss_conf             24466788889999999999994389999999999998113-----------------7917787899999971278999
Q 001578           26 LVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-----------------YEIQDICNRAFCYSQLELHKHV   88 (1050)
Q Consensus        26 ~~~~~~~~~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~-----------------~n~~~~~nrA~~~~~lg~~~~A   88 (1050)
                      +.+++.....+...+..++.+|..|+|.+|+..|+++|...                 .+...+.|+|.||.++|+|.+|
T Consensus        17 l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   96 (169)
T d1ihga1          17 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA   96 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             74099999999999999999999088999999999998741111666655778771902399999899999864021013


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999998099875699999999998599999999999999630379386898999999
Q 001578           89 IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (1050)
Q Consensus        89 i~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~~~~ll~l~~  148 (1050)
                      +..|++||+++|+++.+++++|.+|..+|++++|+..|++++++.|+.+.....+..+..
T Consensus        97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          97 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             666554431000223677769999998047999999999999859899999999999999

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.3e-10  Score=92.35  Aligned_cols=109  Identities=19%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999990997999999999999599999999999999999079999999999999959991999999999999919
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      +...|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..+.+++.++|.++.++..+|.++..+|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999996999999999999886199601343000110110000112100134677740220267788999999812


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999996199999999999999
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIV  492 (1050)
Q Consensus       464 ~~~~A~~~l~~al~~~p~~~~~~~~la~~  492 (1050)
                      ++++|+..++++++++|+++.++..++.+
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             79999999999998498989999999978

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=1.9e-10  Score=95.90  Aligned_cols=104  Identities=16%  Similarity=0.214  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             99999999999982895999999999994179999999999999998899799999999988129999999999999999
Q 001578          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (1050)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~  630 (1050)
                      +..+...|..++..|+|++|+..|++++.++|.++.+|.++|.+|...|++++|+..|++++.++|+++.+++.+|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999999999986999999999999998599989999817898741000001247888888718873899999999999


Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             906999999999999974379978
Q 001578          631 AIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       631 ~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      .+|++++|+..|++++.++|++..
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~~  107 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQRL  107 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             879999999999999874955679

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.5e-10  Score=91.18  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHH-------HH
Q ss_conf             89999999999994389999999999998113-79177878999999712789999999999980998756-------99
Q 001578           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AY  106 (1050)
Q Consensus        35 ~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~-~n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~-------a~  106 (1050)
                      .+...+..|+.+|..|+|++|+.+|+++|+.+ .++..+.|+|.+|.++|+|.+|+.+|++||+++|++..       +|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             88999999999998599999999999998849645899986889998818607789999999986801278898899999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999999859999999999999963037
Q 001578          107 ILKGCAFSALGRKEEALSVWEKGYEHALH  135 (1050)
Q Consensus       107 ~~lG~~y~~lg~~~eA~~~~~~al~~~~~  135 (1050)
                      +++|.++..++++++|+..|++++...+.
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf             99999999938899999999999845999

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.6e-09  Score=84.92  Aligned_cols=25  Identities=32%  Similarity=0.549  Sum_probs=9.5

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9999999909979999999999995
Q 001578          386 SRGIAQVNEGKYASAISIFDQILKE  410 (1050)
Q Consensus       386 ~~a~~~~~~g~~~~Ai~~~~~al~~  410 (1050)
                      ..|..++..|+|++|+..|++++..
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~   42 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSW   42 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999969999999999999887

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.10  E-value=1.7e-08  Score=80.38  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             99999999990997999999999999
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILK  409 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~  409 (1050)
                      +...|..++..|+|.+|+..|.+++.
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~   43 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVS   43 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99999999995999999999999999

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.08  E-value=6.3e-09  Score=83.82  Aligned_cols=128  Identities=17%  Similarity=0.192  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999990997999999999999599999999999999999079999999999999959991999999999999919
Q 001578          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (1050)
Q Consensus       384 ~~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  463 (1050)
                      +...|..++..|+|.+|+..|.+++...+..                  .+...........|....++.++|.++..+|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999088999999999998741111------------------6666557787719023999998999998640


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             999999999999961999999999999999984999999999999998279999999999999998
Q 001578          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (1050)
Q Consensus       464 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  529 (1050)
                      ++++|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+...
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             210136665544310002236777699999980479999999999998598999999999999999

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.01  E-value=2e-08  Score=79.82  Aligned_cols=67  Identities=22%  Similarity=0.180  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             9999999998899799999999988129999999999999999906999999999999974379978
Q 001578          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       588 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      +.++|.+|..+|++++|+.++++++.++|.+..+++.+|.++..+|++++|+.+|+++++++|++.+
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf             9619999998465301110100010000000124677689999968999999999999982989899

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.1e-08  Score=81.85  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999988997999999999881299999999999999999069999999999999743799788899999999999
Q 001578          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKFVLQCLAFYQKE  667 (1050)
Q Consensus       588 ~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~~~~~~~~~~  667 (1050)
                      +..+|..++..|+|++|+.+|++++.++|+++.++.++|.+|..+|++++|+..++++++++|++...+...+.+++.+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999985999999999999988496458999868899988186077899999999868012788988999999999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf             999993089999999998430299
Q 001578          668 IALYTASKINSEFCWFDIDGDIDP  691 (1050)
Q Consensus       668 ~~~~~~~~~~~A~~~l~~a~~l~p  691 (1050)
                      ..+...+++++|+.+|.+++..++
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf             999993889999999999984599

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.95  E-value=8.2e-09  Score=82.89  Aligned_cols=106  Identities=18%  Similarity=0.137  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC
Q ss_conf             88999999999999438999999999999811379-------------17787899999971278999999999998099
Q 001578           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-------------IQDICNRAFCYSQLELHKHVIRDCDKALQLDP  100 (1050)
Q Consensus        34 ~~~~~~r~~~~~~~~~g~y~~Ai~~y~~ai~~~~n-------------~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP  100 (1050)
                      +.+......+...|..|+|++|+..|+++|+..++             ...|.|+|.+|..+|+|++|+.+++++|.+.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             99999999999999859999999999999986844201020012102799999999999982863001576643553043


Q ss_pred             C-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             8-----------75699999999998599999999999999630379386
Q 001578          101 T-----------LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (1050)
Q Consensus       101 ~-----------~~~a~~~lG~~y~~lg~~~eA~~~~~~al~~~~~~~~~  139 (1050)
                      .           +..+++++|.+|..+|++++|+..|++++++.+.....
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf             10024554431127877526999998888888899999999866874230

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.90  E-value=2.7e-08  Score=78.83  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=45.3

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99999999909979999999999995999999999999999990799999999999999599919999999999999199
Q 001578          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (1050)
Q Consensus       385 ~~~a~~~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  464 (1050)
                      +..|..++..|++++|+..|++++..+|+++.++..+|.++...+++++|+..++++++++|.+..++..+|.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             99999999876058999988610112111100123354564101258774100000111111000003789999999789


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q 001578          465 SVEAIQDLSKAL  476 (1050)
Q Consensus       465 ~~~A~~~l~~al  476 (1050)
                      +++|++.+++.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999981

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.89  E-value=3.2e-08  Score=78.24  Aligned_cols=85  Identities=13%  Similarity=0.073  Sum_probs=34.0

Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99943899999999999981137-91778789999997127899999999999809987569999999999859999999
Q 001578           45 KLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (1050)
Q Consensus        45 ~~~~~g~y~~Ai~~y~~ai~~~~-n~~~~~nrA~~~~~lg~~~~Ai~~~~~AL~ldP~~~~a~~~lG~~y~~lg~~~eA~  123 (1050)
                      .+++.|++++|+.+|++++..+| ++..+.++|.++.++|++.+|+..+++|++++|++..+++.+|.+|..+|++++|+
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~  104 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL  104 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf             99987605899998861011211110012335456410125877410000011111100000378999999978999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q 001578          124 SVWEKG  129 (1050)
Q Consensus       124 ~~~~~a  129 (1050)
                      +.|++.
T Consensus       105 ~~l~~~  110 (112)
T d1hxia_         105 ASLRAW  110 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999998

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7e-08  Score=75.49  Aligned_cols=99  Identities=14%  Similarity=0.021  Sum_probs=42.9

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHH
Q ss_conf             9999998289599999999999417999999999999999889---9799999999988129999--9999999999999
Q 001578          557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---QHKKAIKDLSSGLGIDPSN--IECLYLRASCYHA  631 (1050)
Q Consensus       557 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eAl~~l~~al~~~p~~--~~~~~~la~~~~~  631 (1050)
                      ++..+...+++++|.+.|++++..+|.++.+++++|.++...+   ++++|+..|++++..+|..  ..+++++|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             98873699999999999999883299989999999999998512678999999999998606993199999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             069999999999999743799788
Q 001578          632 IGEYREAIKDYDAALDLELDSMEK  655 (1050)
Q Consensus       632 ~g~~~eA~~~~~~al~l~p~~~~~  655 (1050)
                      +|++++|+.+|+++++++|++..+
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             731699999999999769098999

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.79  E-value=4.7e-08  Score=76.91  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=0.0

Q ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999099799999999999959999999999999999----------9079999999999999959991999999999999
Q 001578          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA----------FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (1050)
Q Consensus       391 ~~~~g~~~~Ai~~~~~al~~~p~~~~a~~~la~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (1050)
                      +.+.+.|++|+..|+++++.+|+++.++..+|.++.          ..+.+++|+..|+++++++|++..+++++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             99873699999999999861883108999999999876213333677887888999999988730120587766899998


Q ss_pred             HCCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             9199-----------9999999999996199999999999999998499999999
Q 001578          461 ALGE-----------SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (1050)
Q Consensus       461 ~~g~-----------~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  504 (1050)
                      .+|+           +.+|..+|++++.++|++...+..++.+....+.+.++.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7010113578898867876312110002598889999999999997978999998

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=5.2e-06  Score=60.64  Aligned_cols=89  Identities=13%  Similarity=0.036  Sum_probs=41.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCCCCC-----------------------HHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             99999994389999999999998113791-----------------------7787899999971278999999999998
Q 001578           41 IELAKLCSLRNWSKAIRILDSLLAQSYEI-----------------------QDICNRAFCYSQLELHKHVIRDCDKALQ   97 (1050)
Q Consensus        41 ~~~~~~~~~g~y~~Ai~~y~~ai~~~~n~-----------------------~~~~nrA~~~~~lg~~~~Ai~~~~~AL~   97 (1050)
                      ..+..++..|++++|+..|++|+.+.+..                       ..+.+++.++..+|++.+|+..|+++++
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999998879999999999998638613112576318999999999999999999999999887990578999999998


Q ss_pred             HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             09987569999999999859999999999999
Q 001578           98 LDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (1050)
Q Consensus        98 ldP~~~~a~~~lG~~y~~lg~~~eA~~~~~~a  129 (1050)
                      ++|.+..+|..++.+|..+|++.+|+..|+++
T Consensus        96 ~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          96 EHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             49851999999999999855799999999999

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.53  E-value=2.3e-07  Score=71.42  Aligned_cols=130  Identities=12%  Similarity=0.016  Sum_probs=100.2

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99998399999999999999727583999999999999828959999999999941799999999999999988997999
Q 001578          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (1050)
Q Consensus       525 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  604 (1050)
                      .-.+..|++++|+..++++++.+|.+..++..++.++...|++++|+..++++++++|+....+..++.++...+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             99988889999999999999978999999999999999879999999999999986997389999999999834663789


Q ss_pred             HHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf             9999998812-9999999999999999906999999999999974379978
Q 001578          605 IKDLSSGLGI-DPSNIECLYLRASCYHAIGEYREAIKDYDAALDLELDSME  654 (1050)
Q Consensus       605 l~~l~~al~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~  654 (1050)
                      ...+...... .|.....+...+.++...|++++|...+.++.++.|+.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             987544420358647999999999999679989999999999833999981

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.51  E-value=2.9e-07  Score=70.65  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999889979999999998812999-----------99999999999999069999999999999743799
Q 001578          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-----------NIECLYLRASCYHAIGEYREAIKDYDAALDLELDS  652 (1050)
Q Consensus       587 ~~~~la~~~~~~g~~~eAl~~l~~al~~~p~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~  652 (1050)
                      ++.++|.+|..+|++++|+..+++++.+.|.           ...+++++|.+|..+|++++|+..|++++++.|..
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999998286300157664355304310024554431127877526999998888888899999999866874

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.49  E-value=3.8e-07  Score=69.65  Aligned_cols=133  Identities=11%  Similarity=-0.099  Sum_probs=93.3

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             99998289599999999999417999999999999999889979999999998812999999999999999990699999
Q 001578          559 QFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (1050)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA  638 (1050)
                      .-.+..|++++|+..++++++.+|.+...+..++.++...|++++|+..|+++++++|+....+..++.++...+..+++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             99988889999999999999978999999999999999879999999999999986997389999999999834663789


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             99999999743799788899999999999999993089999999998430299989999
Q 001578          639 IKDYDAALDLELDSMEKFVLQCLAFYQKEIALYTASKINSEFCWFDIDGDIDPLFKEYW  697 (1050)
Q Consensus       639 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~l~p~~~e~w  697 (1050)
                      ...+.......+  +..+    ..++..+..+...++.++|...+..+.+..|.....|
T Consensus        84 ~~~~~~~~~~~~--p~~~----~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          84 AQGAATAKVLGE--NEEL----TKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             TTSCCCEECCCS--CHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHHHHHCCCC--CHHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             987544420358--6479----9999999999967998999999999983399998100

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.2e-05  Score=57.80  Aligned_cols=85  Identities=13%  Similarity=-0.068  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             39999999999998289599999999999417999-------99999999999988997999999999881299999999
Q 001578          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (1050)
Q Consensus       550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~  622 (1050)
                      .++..+.+|.++...|+|.+|+..|++++.+.|..       ..++.++|.++...|++++|+.+++++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             69999999999999779999999999999988653014764789999872688865773988878877988692979999


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999999999069
Q 001578          623 YLRASCYHAIGE  634 (1050)
Q Consensus       623 ~~la~~~~~~g~  634 (1050)
                      .+++.+...+++
T Consensus        84 ~Nl~~~~~~l~k   95 (95)
T d1tjca_          84 GNLKYFEYIMAK   95 (95)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998674

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=1.8e-05  Score=56.43  Aligned_cols=118  Identities=12%  Similarity=-0.029  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999839999999999999972758399999999999982895999999999994179999999999999998
Q 001578          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (1050)
Q Consensus       518 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  597 (1050)
                      ..+...|......|++++|+..|.+++.+.+.........       +.+     .......+.+....++..++.++..
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w-----~~~~r~~l~~~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQF-----VEPFATALVEDKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STT-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC-------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999988799999999999986386131125763-------189-----9999999999999999999999988


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             89979999999998812999999999999999990699999999999997
Q 001578          598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAALD  647 (1050)
Q Consensus       598 ~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  647 (1050)
                      .|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++..
T Consensus        80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             79905789999999984985199999999999985579999999999999

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.17  E-value=0.0081  Score=35.28  Aligned_cols=78  Identities=15%  Similarity=0.211  Sum_probs=27.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----CCCHHH
Q ss_conf             95999999999994179999999999999998----8997999999999881299999999999999999----069999
Q 001578          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA----IGEYRE  637 (1050)
Q Consensus       566 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~e  637 (1050)
                      +.++|+.+++++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.+.  .++.+.+.+|.+|..    ..+..+
T Consensus        38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~  113 (133)
T d1klxa_          38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  113 (133)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             899999987654113--312555567875330135310357888887500025--7406778999999829846778999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999997
Q 001578          638 AIKDYDAALD  647 (1050)
Q Consensus       638 A~~~~~~al~  647 (1050)
                      |+.+|+++.+
T Consensus       114 A~~~~~~Aa~  123 (133)
T d1klxa_         114 AVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.01  Score=34.48  Aligned_cols=78  Identities=12%  Similarity=0.040  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             6999999999999909---97999999999999599999-9999999999990799999999999999599919999999
Q 001578          380 SVDFRLSRGIAQVNEG---KYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (1050)
Q Consensus       380 ~~~~~~~~a~~~~~~g---~~~~Ai~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (1050)
                      .++..|..|.++....   +..+++.+++.++..+|... ++++.+|..|+.+|+|++|..+++++++++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             81019999999982796889999999999998549505999999999999987329999999999982399849999999


Q ss_pred             HH
Q ss_conf             99
Q 001578          456 GQ  457 (1050)
Q Consensus       456 a~  457 (1050)
                      ..
T Consensus       114 ~~  115 (124)
T d2pqrb1         114 SM  115 (124)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.95  E-value=0.013  Score=33.79  Aligned_cols=11  Identities=27%  Similarity=0.504  Sum_probs=3.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             79999999998
Q 001578          601 HKKAIKDLSSG  611 (1050)
Q Consensus       601 ~~eAl~~l~~a  611 (1050)
                      +.+|+.+|+++
T Consensus       111 ~~~A~~~~~~A  121 (133)
T d1klxa_         111 EKQAVKTFEKA  121 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.014  Score=33.43  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             9999999999998899---799999999988129999-99999999999990699999999999997437997888
Q 001578          585 SKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSN-IECLYLRASCYHAIGEYREAIKDYDAALDLELDSMEKF  656 (1050)
Q Consensus       585 ~~~~~~la~~~~~~g~---~~eAl~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~~~  656 (1050)
                      ....+.+|+++....+   ..+++..++.++..+|.+ .++++++|..|.++|++++|..+++++++++|++..+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             1019999999982796889999999999998549505999999999999987329999999999982399849999

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.25  Score=23.48  Aligned_cols=118  Identities=8%  Similarity=-0.055  Sum_probs=48.8

Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             9199999999999999619999999999999----999849999999999999982799999999999999983999999
Q 001578          461 ALGESVEAIQDLSKALEFEPNSADILHERGI----VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (1050)
Q Consensus       461 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA  536 (1050)
                      ...+.+.|...+.......+...........    .+...+..+.+...+........+.......++ .....+++..+
T Consensus       226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~  304 (450)
T d1qsaa1         226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGL  304 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCCCHHHH
T ss_conf             42485579999875212023567999999999999998768639999999860123466699999999-99882986999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             9999999972758399999999999982895999999999994
Q 001578          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (1050)
Q Consensus       537 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (1050)
                      ...+..............+-+|..+...|+.+.|...|..+..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             9999865846242899999999999983981568999999845

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=85.35  E-value=0.71  Score=19.86  Aligned_cols=207  Identities=11%  Similarity=-0.048  Sum_probs=77.7

Q ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             907999999999999995999199999999999----9919999999999999961999999999999999984999999
Q 001578          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (1050)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A  502 (1050)
                      ...+.+.|...+.......+.....+.......    ...+....+...+........ +......++...+..+++..+
T Consensus       226 a~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHH
T ss_conf             4248557999987521202356799999999999999876863999999986012346-669999999999882986999


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999999827999999999999999839999999999999972758399999999999982895999999999994179
Q 001578          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (1050)
Q Consensus       503 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  582 (1050)
                      ...+..............+.+|..+...|+.++|...|..+.. .++   .|-.++...  +|..-. ..  .......+
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~~---fYG~LAa~~--Lg~~~~-~~--~~~~~~~~  375 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QRG---FYPMVAAQR--IGEEYE-LK--IDKAPQNV  375 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SCS---HHHHHHHHH--TTCCCC-CC--CCCCCSCC
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCC---HHHHHHHHH--CCCCCC-CC--CCCCCCCH
T ss_conf             9999865846242899999999999983981568999999845-787---399999998--299989-98--67799567


Q ss_pred             CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99---9999999999998899799999999988129999999999999999906999999999999
Q 001578          583 RF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAIKDYDAA  645 (1050)
Q Consensus       583 ~~---~~~~~~la~~~~~~g~~~eAl~~l~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a  645 (1050)
                      ..   ...-...+..+...|+...|...+..++..  .+..-...++.+..+.|.++.|+....++
T Consensus       376 ~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             77631385989999999869946999999999867--99999999999999879846999999998