Citrus Sinensis ID: 001618
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1043 | 2.2.26 [Sep-21-2011] | |||||||
| Q4QR29 | 1157 | RNA polymerase-associated | N/A | no | 0.819 | 0.738 | 0.349 | 1e-142 | |
| Q6PD62 | 1173 | RNA polymerase-associated | yes | no | 0.776 | 0.690 | 0.361 | 1e-142 | |
| Q62018 | 1173 | RNA polymerase-associated | yes | no | 0.776 | 0.690 | 0.36 | 1e-141 | |
| Q6DEU9 | 1172 | RNA polymerase-associated | yes | no | 0.778 | 0.692 | 0.353 | 1e-139 | |
| Q03560 | 1150 | TPR repeat-containing pro | yes | no | 0.799 | 0.725 | 0.274 | 6e-89 | |
| O42668 | 1039 | Tetratricopeptide repeat | yes | no | 0.788 | 0.791 | 0.242 | 7e-39 | |
| P89105 | 1077 | RNA polymerase-associated | yes | no | 0.693 | 0.671 | 0.227 | 7e-30 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.431 | 0.430 | 0.217 | 5e-09 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.431 | 0.430 | 0.217 | 5e-09 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.431 | 0.430 | 0.217 | 5e-09 |
| >sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 324/926 (34%), Positives = 504/926 (54%), Gaps = 71/926 (7%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREK 61
EYFKQGK E F ++LE + ID Y D +++ L+ L YY + E + K
Sbjct: 50 EYFKQGKTEDFVKLLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNK 106
Query: 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPAL 120
+E AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PAL
Sbjct: 107 KELITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPAL 166
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LG+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL
Sbjct: 167 LGKACISFNKKDYRGALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALD 226
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
L+P V ALV LAV++L EA I+ G++ + +A+ I P M LN+LANHFFF +
Sbjct: 227 LNPTCVGALVGLAVLELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYS 286
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
V+ L A T ++ S Y LARS+H + DY++A YY + + F+ P+
Sbjct: 287 KVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPF 344
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKA 357
+GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 345 FGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKV 404
Query: 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEK 416
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF
Sbjct: 405 TEQYPDDVEAWIELAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRL 464
Query: 417 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 476
G A + F L LD R + + H E
Sbjct: 465 GNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHY 491
Query: 477 WNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 534
+N ++V +NLARL E + + + LY+ IL ++ +YVD YLRL A+A+ + N +
Sbjct: 492 YNSISVTTSYNLARLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEAS 551
Query: 535 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWN 593
+ EAL++N +P+A S++G+L L +W ++ F R + D+Y+ L+LGN
Sbjct: 552 DWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV- 610
Query: 594 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 653
+ L R + E H ++A +Y +V+ + NL+AANG G VLA KG ++D+F
Sbjct: 611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVF 670
Query: 654 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713
QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR
Sbjct: 671 AQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLAR 725
Query: 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAE 773
++ + Q+CK+ LL+A H+AP++ L F+ + +Q+ + L+ + V + V E
Sbjct: 726 ALFKCGKLQECKQILLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKE 785
Query: 774 LENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQE 833
LE A R F++LS + FD + C LL A+ H A +++++ +
Sbjct: 786 LELAHRYFNYLSKVGDKMR--FDLALATSEARQCSDLLSQAQYHVARARKQDEEEK---- 839
Query: 834 AARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRE 893
E R K E++K+ L +K E E+K LR+ EE +++ EQ R+ R
Sbjct: 840 ---------EMRTKQEQEKEVLRQKLLKEQEEKHLREIEEQ-KKLLEQ-RAQYLEKTRNL 888
Query: 894 RSENDDDEVGHSEKRRRKGGKRRKKD 919
S + E +K+R GG+R KK+
Sbjct: 889 LSFTGEMETPKEKKQRGGGGRRSKKN 914
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus laevis (taxid: 8355) |
| >sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 505 bits (1301), Expect = e-142, Method: Compositional matrix adjust.
Identities = 316/875 (36%), Positives = 488/875 (55%), Gaps = 65/875 (7%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREK 61
EY+KQGK E+F ++LE + ID Y D +++ L+ L YY + E + K
Sbjct: 50 EYYKQGKTEEFVKLLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNK 106
Query: 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPAL 120
++ AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PAL
Sbjct: 107 KDLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPAL 166
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LG+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+
Sbjct: 167 LGKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALE 226
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
L+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 227 LNSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYS 286
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P+
Sbjct: 287 KVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPF 344
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKA 357
+GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 345 FGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKV 404
Query: 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEK 416
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF
Sbjct: 405 TEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRL 464
Query: 417 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 476
G A + F L LD R + + H E
Sbjct: 465 GNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHY 491
Query: 477 WNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 534
+N ++V +NLARL E + + A LY+ IL ++ +YVD YLRL A+A+ + N +
Sbjct: 492 YNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEAS 551
Query: 535 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWN 593
+ EAL++N +P+A S++G+L L +W ++ F R + D+Y+ L+LGN
Sbjct: 552 DWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNV- 610
Query: 594 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 653
+ L R + E H ++A +Y +V+ NLYAANG G VLA KG F ++D+F
Sbjct: 611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVF 670
Query: 654 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713
QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR
Sbjct: 671 AQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLAR 725
Query: 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAE 773
++ + Q+CK++LL+A H+APS+ L F+ + +Q+ + S L+ + EV + V E
Sbjct: 726 ALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKE 785
Query: 774 LENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR---- 829
LE A R FS+LS + FD T C LL A+ H A +++++ R
Sbjct: 786 LELAHRYFSYLSKVGDKMR--FDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRA 843
Query: 830 ---QRQEAARQAALAEE--ARRKAEEQKKYLLEKR 859
Q +E RQ L E+ R + +E++K LLE+R
Sbjct: 844 KQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Homo sapiens (taxid: 9606) |
| >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust.
Identities = 315/875 (36%), Positives = 487/875 (55%), Gaps = 65/875 (7%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREK 61
EY+KQGK E+F ++LE + ID Y D +++ L+ L YY + E + K
Sbjct: 50 EYYKQGKTEEFVKLLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNK 106
Query: 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPAL 120
++ AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PAL
Sbjct: 107 KDLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPAL 166
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LG+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+
Sbjct: 167 LGKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALE 226
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
L+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 227 LNSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYS 286
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P+
Sbjct: 287 KVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPF 344
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKA 357
+GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 345 FGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKV 404
Query: 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEK 416
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF
Sbjct: 405 TEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRL 464
Query: 417 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 476
G A + F L LD R + + H E
Sbjct: 465 GNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHY 491
Query: 477 WNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 534
+N ++V +NLARL E + + A LY+ IL ++ +YVD YLRL A+A+ + N +
Sbjct: 492 YNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEAS 551
Query: 535 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWN 593
+ EAL++N +P+A S++G+L L +W ++ F R D+Y+ L+LGN
Sbjct: 552 DWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLALGNV- 610
Query: 594 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 653
+ L R + E H ++A +Y +V+ NLYAANG G VLA KG F ++D+F
Sbjct: 611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVF 670
Query: 654 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713
QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR
Sbjct: 671 AQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLAR 725
Query: 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAE 773
++ + Q+CK++LL+A H+APS+ L F+ + +Q+ + S L+ + EV + V E
Sbjct: 726 ALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKE 785
Query: 774 LENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR---- 829
LE A R FS+LS + FD + C LL A+ H A +++++ R
Sbjct: 786 LELAHRYFSYLSKVGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEERELRA 843
Query: 830 ---QRQEAARQAALAEE--ARRKAEEQKKYLLEKR 859
Q +E RQ L E+ R + +E++K LLE+R
Sbjct: 844 KQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription (By similarity). Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Mus musculus (taxid: 10090) |
| >sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 311/881 (35%), Positives = 481/881 (54%), Gaps = 69/881 (7%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREK 61
EY+KQ K E F ++LE + ID Y D +++ L+ L YY + E + K
Sbjct: 50 EYYKQVKTEDFVKLLE---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNK 106
Query: 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPAL 120
+E AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PAL
Sbjct: 107 KELITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPAL 166
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LG+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL
Sbjct: 167 LGKACISFNKKDYRGALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALD 226
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
L+P V ALV LAV++L EA I+ G++ + +A+ I P M LN+LANHFFF +
Sbjct: 227 LNPTCVGALVGLAVLELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYS 286
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
V+ L A T ++ S Y LARS+H + DY++A YY + + F+ P+
Sbjct: 287 KVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPF 344
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKA 357
+GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 345 FGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKV 404
Query: 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEK 416
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF
Sbjct: 405 TEQYPDDVEAWIELAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRL 464
Query: 417 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 476
G A + F L LD R + + H E
Sbjct: 465 GNLGEAKKYF---------LASLD------------------------RAKAEAEHDEHY 491
Query: 477 WN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 534
+N VT +NLARL E + + + LY+ IL ++ +YVD YLRL A+A+ + N +
Sbjct: 492 YNAISVTTTYNLARLYEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEAS 551
Query: 535 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWN 593
+ EAL++N +P+A S++G+L L +W ++ F R + D+Y+ L+LGN
Sbjct: 552 DWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV- 610
Query: 594 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLF 653
+ L R + E H ++A +Y +V+ + NLYAANG G VLA KG ++D+F
Sbjct: 611 WLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVF 670
Query: 654 TQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713
QV+EA + + DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR
Sbjct: 671 AQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLAR 725
Query: 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAE 773
++ + Q+CK+ LL+A H+AP++ L F+ + +Q+ + L+ + V + V E
Sbjct: 726 ALFKCGKLQECKQILLKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKE 785
Query: 774 LENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQE 833
LE A R F++LS + FD + C LL A+ H A +++++ +
Sbjct: 786 LELAHRYFNYLSKVGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEEK---- 839
Query: 834 AARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEH 874
E R K E++K+ L +K E E+KRL++ EE
Sbjct: 840 ---------ELRAKQEQEKEILRQKLIKEQEEKRLKEIEEQ 871
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus tropicalis (taxid: 8364) |
| >sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 329 bits (844), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 244/888 (27%), Positives = 452/888 (50%), Gaps = 54/888 (6%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEE 63
EY++Q +V+ F ILE S EY V+ +++ L+ L Y+ G E + +K +
Sbjct: 60 EYYRQDRVDLFMMILESAGSRAGLEYEG-VKQDQMRALDILAAYWMTQGYREKAKDKKSD 118
Query: 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLL-----AKGEVEQASSAFKIVLEADRDNVP 118
F AT +N A +I M+E S + L + + E A F V++ + NV
Sbjct: 119 FFSKATVLFNTADKIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTNPKNVL 178
Query: 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 178
L+G+A + FN+ Y ++ ++++A++ +R+GIG C K+G + KA+ AF+RA
Sbjct: 179 PLIGKAVIAFNKKDYKTAIYYFRKAIRQCRHTIADLRVGIGHCFAKMGMMDKAKTAFERA 238
Query: 179 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238
++++P NV A+ L ++ L + ++ + R++ + +AL +LANHFFF +
Sbjct: 239 MEIEPYNVSAMCGLGIILLNTYDHDSLKHAVSLFGRSYNLQTDHPVALIHLANHFFFKKE 298
Query: 239 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 298
L A + K+ ++Y + R H++G ++ A YY + + N H
Sbjct: 299 IERAWTLAWHAATYNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEH--TL 356
Query: 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI-------EK 349
+YGLGQ+ + + A+ F+ V + P+N +T+K LG +Y VQL +K
Sbjct: 357 AHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQK 416
Query: 350 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNN 408
+++L K ++ D +A IDL +LL ++D +L+ ++ A LL P E+LNN
Sbjct: 417 GRDVLGKYLAVENDDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNN 476
Query: 409 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468
+G ++ ++E A FK A L+ + T D + +L+ R
Sbjct: 477 VGALYMSMKQYEKAEHHFKRA------KERLEEQLNT---DEGSLLLE-------RRSAP 520
Query: 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 528
+ +H+ +T+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I + R+
Sbjct: 521 EKSHL------LTIRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRH 574
Query: 529 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYA 585
+ S + + ++ + P +++G+L ++W+ A++ F S + K D Y+
Sbjct: 575 QVYESSLWLKQGVQFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYS 634
Query: 586 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 645
++LGN +F L N R + E ++++A ++Y + + N+YAANG G VLA K
Sbjct: 635 LVALGN-VWFEQLLNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRN 693
Query: 646 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 705
++ ++D+F+QV+E+ S + DVW+N+AHV + + A++MY + ++KF D+
Sbjct: 694 WNDARDVFSQVRESTS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDS 748
Query: 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTAD 765
+ YLA+ +Y A + K++L A+ N L+F+ + ++K + L+ + T++
Sbjct: 749 TLQHYLAKAYYRANMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHKMTSE 808
Query: 766 EVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIHREAA 821
+V + + +L+ A ++F ++S + + T + CK LL AK AA
Sbjct: 809 QVTAAIDDLKFADKIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHKLAAA 868
Query: 822 EREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 869
+ ++++ R+ E + +A + + E + K EK+KLED K LR
Sbjct: 869 QTQDEEERRLMEKQEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLR 915
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|O42668|TPR1_SCHPO Tetratricopeptide repeat protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 231/953 (24%), Positives = 409/953 (42%), Gaps = 131/953 (13%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA-LGVYYTYLGKIETKQRE-- 60
EY+ +G EQ IL+ G D E + ILNA + Y + + +++
Sbjct: 60 EYYIRGLREQAILILKSGLETLKDS-------ESLCILNANIAAIYLSMAREAMLKKDTD 112
Query: 61 -KEEHFILATQYYNKASRIDMHEPSTWVGKG--QLLLA---KGEVEQASSAFKIVLEADR 114
++E Y A+ ID + G ++LL K +E A+ F VL+
Sbjct: 113 LRDEQLRNVRTYLEAANNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDFVLQKSG 172
Query: 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 174
N+ LG+A + + +G Y +L+ Y+RAL +P R+GIGLC + L A A
Sbjct: 173 GNILGFLGKARILYAKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSA 232
Query: 175 FQRALQLDPEN--VEALVALAVMDL---QANEAAGIR---KGMEKMQRAFEIYPYCAMAL 226
+ R QLDP+N V+ + L DL N + ++ K ++ +QRAF+ +A
Sbjct: 233 WTRVQQLDPKNTVVDTYIGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVAS 292
Query: 227 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 286
+ L + + + +L E + + + YY + R+YH G+ EKA Y +
Sbjct: 293 SILERYVYSKKNYEGCIKLAENVIQNSFSSSLIADGYYWMGRAYHQMGNNEKAMASYQKA 352
Query: 287 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 346
K + H + G+GQ+Q+ D SA FE++ E E L LG ++ +
Sbjct: 353 -KAADDRH--LLSSVGIGQIQILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSK 409
Query: 347 --IEKAQELLRKAAKID-----PR--DAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 397
+ KA+ LL +A + PR D+ +I L DT +L A L+ A
Sbjct: 410 PDLTKARMLLDRAFNLVGSSKLPRVVDSDLYITQARLWEKEDTKKSLGFLTRALDFLESA 469
Query: 398 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 457
V E+LNNI V+ + G AH G+ I K K+ + DA+ +
Sbjct: 470 HMSVGPELLNNIAVLQYHLGLIPEAH-------GNII-------KAKSVLPDANPELSLL 515
Query: 458 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 517
D +NLAR E++ +T AS Y IL K+ ++DA
Sbjct: 516 LD------------------------YNLARCEEELGNTSVASEAYVSILEKHPSFIDAR 551
Query: 518 LRLAAIAKARNNLQLSIELV------NEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 571
+R + + N + E+ ++ L+V + LS +++ + +T
Sbjct: 552 IRKCLLQLSNPNEETFKEIRHIMNADSQNLEVRAFFGWYLSKQKRRPVEDPEVRHCSQTL 611
Query: 572 RAASDATDGKDSYATLSLGNWNYFAA----LRNEKRAPKLEATHLEKAKELYTRVIVQHT 627
R D D Y+ + LGN A + N++ K + ++ KA + Y + I
Sbjct: 612 RHWHD-----DIYSLVQLGNAYMRQAREFRVHNDREKLKRQKLYI-KAIQSYDQAIKFDP 665
Query: 628 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 687
N +AA G ++LA+ QF + + ++V+EA + + IN+ + F+
Sbjct: 666 KNAHAAQGIAIILAQNRQFSKALLILSKVREAIKDATTL------INIGNCLAELKQFSR 719
Query: 688 AMKMYQNCLRKFYYNTDAQILLYLARTHYE---AEQWQDCKKSLLRAIHLA----PSNYT 740
A+++++ + +L L R + + D K +R LA P N +
Sbjct: 720 AIEVFETVYSSTGESDTYGVLSCLGRVWLQRGRESKNVDYLKESVRYATLALEKNPENPS 779
Query: 741 LRFDAGVAMQKFSASTLQKTR----RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFD 796
L F+ VA +F L + + RT +++ + +L+ ++ F+ L +
Sbjct: 780 LLFN--VAFVQFQLCELIRQKPENSRTVEDLNFAMQQLDASIETFTKLVSVE-------- 829
Query: 797 EKKINTHVEYCKHLLDA-AKIHREAAEREEQQNRQRQEAARQ--AALAEEAR--RKAEEQ 851
H Y ++ AK+ + +R+ ++ Q Q + AA E+AR R+ E+
Sbjct: 830 ------HPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKA 883
Query: 852 KKYLLEKRKLEDEQKRLRQQEEHFQRVKE---QWRSSTPASKRRERSENDDDE 901
++ E+ L+++Q+R RQ +E Q+++E +WR S + + S +DD+E
Sbjct: 884 RRLAEEEALLKEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEE 936
|
Involved in promoting potassiumm ion uptake. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 201/884 (22%), Positives = 365/884 (41%), Gaps = 161/884 (18%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
+ + Y SL+ ++ L ++P R+GIGLC ++L A +++QRALQL+P+N
Sbjct: 194 YQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPKNTS 253
Query: 188 ALVALAVMDLQ------ANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238
A + + + + + N+ K + + F + + L L +++F G
Sbjct: 254 ASILVLLGEFRESFTNSTNDKTFKEAFTKALSDLNNIFSENQHNPVLLTLLQTYYYFKGD 313
Query: 239 HFLVEQLTETALAVTNHGPTK----------SHSYYNLARSYHSKGDYEKAGLYYMASVK 288
+ +T L + +H K S S + R++++ GDY K+ + + S+K
Sbjct: 314 Y-------QTVLDIYHHRILKMSPMIAKIVLSESSFWCGRAHYALGDYRKSFIMFQESLK 366
Query: 289 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV------ 342
K + + GLGQ Q+K ++ FE + + E LG +Y
Sbjct: 367 ---KNEDNLLAKLGLGQTQIKNNLLEESIITFENLYKTNESLQELNYILGMLYAGKAFDA 423
Query: 343 ----------QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 392
Q EKA + L + K+ + L+ S + +KT+
Sbjct: 424 KTAKNTSAKEQSNLNEKALKYLERYLKLTLATKNQLVISRAYLVISQLYELQNQYKTSLD 483
Query: 393 LLKKAGEE-------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 445
L KA EE +P+EVLNN+ HF G+F A FK A K
Sbjct: 484 YLSKALEEMEFIKKEIPLEVLNNLACYHFINGDFIKADDLFKQA--------------KA 529
Query: 446 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 505
V D S+ +T+ +N+AR E+ +D + +Y
Sbjct: 530 KVSDKDESV------------------------NITLEYNIARTNEK-NDCEKSESIYSQ 564
Query: 506 ILFKYQDYVDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLGDLELKND 562
+ + Y+ A +R + A++ ++ +S E+ N+ L +N S G LKN
Sbjct: 565 VTSLHPAYIAARIRNLYLKFAQSKIEDSDMSTEM-NKLLDLNKSDLEIRSFYG-WYLKNS 622
Query: 563 DWVKAKETFRAASDAT----DGKDSYATLSLGNWNYFAAL-----RNEKRAPKLEATHLE 613
K E + T + D+YA +SL N A RN K K + ++L
Sbjct: 623 KERKNNEKSTTHNKETLVKYNSHDAYALISLANLYVTIARDGKKSRNPKEQEKSKHSYL- 681
Query: 614 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 673
KA +LY +V+ N++AA G ++ AE + + ++ +V+++ DV +
Sbjct: 682 KAIQLYQKVLQVDPFNIFAAQGLAIIFAESKRLGPALEILRKVRDSLDNE------DVQL 735
Query: 674 NLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHY-------EAEQWQDCK 725
NLAH Y + A++ Y+ L+KF T IL L R Y +Q
Sbjct: 736 NLAHCYLEMREYGKAIENYELVLKKFDNEKTRPHILNLLGRAWYARAIKERSVNFYQKAL 795
Query: 726 KSLLRAIHL-----APSNYTLRFDAGVAMQKFS-ASTLQKTR---RTADEVRSTVAELEN 776
++ A+ L + S + +A+ F A TL+++ RT +++ ++ L+
Sbjct: 796 ENAKTALDLFVKESSKSKFIHSVKFNIALLHFQIAETLRRSNPKFRTVQQIKDSLEGLKE 855
Query: 777 AVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREE---QQNRQRQE 833
+ +F L+ ++ ++++ ++ + + +A + R E+EE +Q+ + E
Sbjct: 856 GLELFRELNDLKEFNM--IPKEELEQRIQLGETTMKSA-LERSLNEQEEFEKEQSAKIDE 912
Query: 834 AAR---QAALAEEARRKAEEQKKYL-LEK-----RKLEDEQKRLRQQEEHF--------- 875
A + + L E+ K EE+ + L LEK RKL+DE ++L Q+ E
Sbjct: 913 ARKILEENELKEQGWMKQEEEARRLKLEKQAEEYRKLQDEAQKLIQEREAMAISEHNVKD 972
Query: 876 ----QRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 915
++ P KR+ ++ + E +RRK K+
Sbjct: 973 DSDLSDKDNEYDEEKPRQKRKRSTKTKNS----GESKRRKAAKK 1012
|
The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2. In complex with PAF1, required for normal CLN1 and CLN2 G1 cyclin expression in late G1. Also has a role in chromosome segregation where it appears to be involved in microtubule placement. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 217 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 274
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 334
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 335 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 393
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 394 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 453
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 454 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 514 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 572
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 217 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 274
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 334
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 335 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 393
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 394 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 453
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 454 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 514 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 572
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 217 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 274
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 334
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 335 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 393
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 394 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 453
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 454 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 514 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 572
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1043 | ||||||
| 359484435 | 1091 | PREDICTED: RNA polymerase-associated pro | 0.997 | 0.953 | 0.809 | 0.0 | |
| 356556372 | 1088 | PREDICTED: RNA polymerase-associated pro | 0.991 | 0.950 | 0.796 | 0.0 | |
| 356530423 | 1086 | PREDICTED: RNA polymerase-associated pro | 0.982 | 0.943 | 0.803 | 0.0 | |
| 449452556 | 1074 | PREDICTED: RNA polymerase-associated pro | 0.980 | 0.952 | 0.798 | 0.0 | |
| 224068420 | 1056 | PAF1 complex component [Populus trichoca | 0.965 | 0.953 | 0.826 | 0.0 | |
| 255550483 | 1065 | tpr repeat nuclear phosphoprotein, putat | 0.972 | 0.952 | 0.793 | 0.0 | |
| 449500473 | 1050 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.957 | 0.951 | 0.780 | 0.0 | |
| 240254442 | 1091 | protein early flowering 8 [Arabidopsis t | 0.980 | 0.937 | 0.745 | 0.0 | |
| 297835872 | 1058 | hypothetical protein ARALYDRAFT_480219 [ | 0.954 | 0.941 | 0.723 | 0.0 | |
| 20197768 | 1115 | putative TPR repeat nuclear phosphoprote | 0.958 | 0.896 | 0.695 | 0.0 |
| >gi|359484435|ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera] gi|297738576|emb|CBI27821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1707 bits (4421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1048 (80%), Positives = 946/1048 (90%), Gaps = 8/1048 (0%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK++QFRQILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQRE
Sbjct: 46 IAREYFKQGKIDQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEEHFILATQYYNKASRIDMHE STWVGKGQLLLAKG+VEQA +AFKIVL+ DRDNVPAL
Sbjct: 106 KEEHFILATQYYNKASRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQACVEFNRGRYSDSL+ YKRALQV+P CP A+R+GIGLC YKLGQ KAR+AFQR LQ
Sbjct: 166 LGQACVEFNRGRYSDSLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQ 225
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDPENVEALVAL +MDL N+A+GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF
Sbjct: 226 LDPENVEALVALGIMDLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE NKPH+F+ PY
Sbjct: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPY 345
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YGLGQVQLKLGDFRS+L+NFEKVLE+YP+NCE LKALGHIYVQLGQ EKAQE LRKA KI
Sbjct: 346 YGLGQVQLKLGDFRSSLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKI 405
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 420
DPRDAQAF+DLGELLI+SDTGAALDAFKTAR LLKK GEEVPIE+LNNIGV++FE+GEFE
Sbjct: 406 DPRDAQAFLDLGELLITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFE 465
Query: 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480
A Q+FK+A+GDGIWL+ +D K +Y DA SM FKDMQLFH+ E DG+ VELPWNKV
Sbjct: 466 LAEQTFKEAVGDGIWLSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKV 525
Query: 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540
TVLFNLARLLEQ+++T AS+LYRLILFK+ DY+DAYLRLAAIAKARNN+QLSIELV +A
Sbjct: 526 TVLFNLARLLEQLNNTKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDA 585
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 600
LKVN K PN+L MLGDLELKNDDWVKAKETFR+ASDATDGKDSYATLSLGNWNYFAA+R+
Sbjct: 586 LKVNDKGPNSLCMLGDLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRS 645
Query: 601 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660
EKRAPKLEATHLEKAKELYTRV+VQH +NLYAANGAGVVLAEKG FDVSKD+FTQVQEAA
Sbjct: 646 EKRAPKLEATHLEKAKELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAA 705
Query: 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
SGSVFVQMPDVWINLAHVYFAQGNFALA+KMYQNCLRKFYYNTD+Q+LLYLARTHYEAEQ
Sbjct: 706 SGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQ 765
Query: 721 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 780
WQDCKK+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAEL+NAVR+
Sbjct: 766 WQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRI 825
Query: 781 FSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL 840
FS LSAASNLH HGFDEKKI THV YCKHLL+AAK+H EAAEREE QNR R E ARQ L
Sbjct: 826 FSQLSAASNLHFHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNL 885
Query: 841 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDD 900
AEEARRKAEEQ+K+ LE+RK EDE KR+ QQE+HF+RVKEQW+S+ SKR+ERS+ DDD
Sbjct: 886 AEEARRKAEEQRKFQLERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDD 945
Query: 901 EVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMND 960
E G SE+RRRKGGKRRKKDK S Y++E A AD MD ++E EDED +MN+RE QMN+
Sbjct: 946 EGGQSERRRRKGGKRRKKDK---SRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNN 1002
Query: 961 QDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ-----LRD 1015
QDDD E++A D LAAAGLEDSD +D+MA + RR+RA SESD+DEP +++ +R+
Sbjct: 1003 QDDDGEDDAQDLLAAAGLEDSDAEDDMAGPSSGNRRKRAWSESDEDEPQDQRPESSPVRE 1062
Query: 1016 NTDELQDSDGELRENDHKSNGGAALDDD 1043
N+ E+Q+SDGE+++++ K NG AA DD+
Sbjct: 1063 NSAEVQESDGEIKDDNDKPNGDAAEDDE 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556372|ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1691 bits (4379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1049 (79%), Positives = 939/1049 (89%), Gaps = 15/1049 (1%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK++Q+RQILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQRE
Sbjct: 46 IAREYFKQGKIDQYRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ D DNVPAL
Sbjct: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQACVEFNRGR+SDSLE YKR LQV+P+CP A+RLGIGLCRYKLGQ KA+QAF+R LQ
Sbjct: 166 LGQACVEFNRGRFSDSLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQ 225
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDPENVE+L+ALA+MDL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHF
Sbjct: 226 LDPENVESLIALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPY
Sbjct: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPY 345
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YGLGQVQ+KLGDF+SAL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KI
Sbjct: 346 YGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKI 405
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 420
DPRDAQAF++LGELLI SDTGAALDAFKTA TL KK G+EVPIE+LNNIGV+ FE+GEFE
Sbjct: 406 DPRDAQAFLELGELLILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFE 465
Query: 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480
A Q+FK+ALGDG+WL+ ++ + K+ IDA+ S LQFKDMQLFH E++G+HVE+PW+KV
Sbjct: 466 LARQTFKEALGDGVWLSFINEENKS-SIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKV 524
Query: 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540
TVLFNLARLLEQ++D+ AS+ YRLILFKY DY+DAYLRLAAIAKARNN+ LSIELVN+A
Sbjct: 525 TVLFNLARLLEQLYDSGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDA 584
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 600
LKVN K PNALSMLG+LELKNDDWVKAKET R ASDATDGKDSYATLSLGNWNYFAA+RN
Sbjct: 585 LKVNNKCPNALSMLGELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRN 644
Query: 601 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660
EKR PKLEATHLEKAKEL TRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAA
Sbjct: 645 EKRNPKLEATHLEKAKELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAA 704
Query: 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
SGSVFVQMPDVWINLAHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQ
Sbjct: 705 SGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQ 764
Query: 721 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 780
WQDC K+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRV
Sbjct: 765 WQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRV 824
Query: 781 FSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL 840
FS LSAASNLH+HGFDEKKI+THV YC HLL AAK+H EAAE EEQQ RQRQE ARQ AL
Sbjct: 825 FSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVAL 884
Query: 841 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDD 900
AEEARRKAEEQ+K+ +E+RK EDE KR+++QEEHF+RVKEQW+SS+ SKRRERS DD+
Sbjct: 885 AEEARRKAEEQRKFQMERRKQEDELKRVQKQEEHFRRVKEQWKSSS-HSKRRERS--DDE 941
Query: 901 EVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMN 959
E G EK+R+KGGKRRKKDK S+ Y+ E E D+MD + EDE+A +NYR EP QMN
Sbjct: 942 EGGTGEKKRKKGGKRRKKDKHSKLRYDAEEPEDDLMD-EQGMEDEEADINYREEPQTQMN 1000
Query: 960 DQDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEP-FERQ---LR 1014
DD EENA LAAAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ +R
Sbjct: 1001 ---DDAEENAQGLLAAAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVR 1057
Query: 1015 DNTDELQDSDGELRENDHKSNGGAALDDD 1043
N+ ++Q SDGE+R+ D K+NG D++
Sbjct: 1058 QNSADMQLSDGEIRDGD-KTNGDDGNDEE 1085
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530423|ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1676 bits (4340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1042 (80%), Positives = 939/1042 (90%), Gaps = 17/1042 (1%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK++QFRQILEEGSSPEID+YYADVRYERIAILNALG YY+YLGKIETKQRE
Sbjct: 46 IAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ DRDNVPAL
Sbjct: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQACVEFNRGRYSDSLE YKRAL V+P CP A+RLGIGLCRYKLGQ KA+QAF+R
Sbjct: 166 LGQACVEFNRGRYSDSLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER--- 222
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDPENVEALVALA+MDL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHF
Sbjct: 223 LDPENVEALVALAIMDLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHF 282
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPY
Sbjct: 283 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPY 342
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YGLGQVQ+KLGDF+SAL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KI
Sbjct: 343 YGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKI 402
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 420
DPRDAQAF++LGELLI SDTGAALDAFKTARTL KK G+EVPIE+LNNIGV+ FE+GEFE
Sbjct: 403 DPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFE 462
Query: 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480
A Q+FK+ALGDG+WL+ ++ + K+ IDA+ S LQFKDM+LFH E++G+HVE+PW+KV
Sbjct: 463 LAQQTFKEALGDGVWLSFINEEKKS-SIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKV 521
Query: 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540
TVLFNLARLLEQ++D+ AS+LYRL+LFKY DY+DAYLRLAAIAKARNN+ LSIELVN+A
Sbjct: 522 TVLFNLARLLEQLNDSGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDA 581
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 600
LKVN K PNALSMLG+LELKNDDWVKAKET RAASDAT+GKDSYA+LSLGNWNYFAA+RN
Sbjct: 582 LKVNNKCPNALSMLGELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRN 641
Query: 601 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660
EKR PKLEATHLEKAKELYTRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAA
Sbjct: 642 EKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAA 701
Query: 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
SGSVFVQMPDVWINLAHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQ
Sbjct: 702 SGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQ 761
Query: 721 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 780
WQDC K+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRV
Sbjct: 762 WQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRV 821
Query: 781 FSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL 840
FS LSAASNLH+HGFDEKKI+THV YC HLL AAK+H EAAEREEQQ RQRQE ARQ A
Sbjct: 822 FSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAF 881
Query: 841 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDD 900
AEEARRKAEEQ+K+ +E+RK EDE KR++QQEEHF+RVKEQW+SS+ SKRRERS +D++
Sbjct: 882 AEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSS-HSKRRERS-DDEE 939
Query: 901 EVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMN 959
G EK+R+KGGKRRKKDK S+S Y+TE E + M +E EDE+A +NYR EP QMN
Sbjct: 940 GGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPE-NDMMDEQEMEDEEADINYREEPQTQMN 998
Query: 960 DQDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEPF-ERQ---LR 1014
DD EENA LAAAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ R
Sbjct: 999 ---DDAEENAQGLLAAAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPAR 1055
Query: 1015 DNTDELQDSDGELRENDHKSNG 1036
+N+ ++Q SDGE+R+ D K+NG
Sbjct: 1056 ENSADMQLSDGEIRDGD-KTNG 1076
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452556|ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1669 bits (4321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 826/1034 (79%), Positives = 918/1034 (88%), Gaps = 11/1034 (1%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK+EQFRQILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQRE
Sbjct: 46 IAREYFKQGKLEQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPAL
Sbjct: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQACVEFNRG YS+SLE YKRALQV+P CP A+RLGIGLCRY+L Q GKA+QAF+R
Sbjct: 166 LGQACVEFNRGHYSESLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER--- 222
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDPENVEALV LA++DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHF
Sbjct: 223 LDPENVEALVGLAIIDLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHF 282
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
LVEQLTETALA+TNHGPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPY
Sbjct: 283 LVEQLTETALAITNHGPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPY 342
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YGLGQVQLK+GD RSAL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KI
Sbjct: 343 YGLGQVQLKMGDLRSALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKI 402
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 420
DPRDAQAF+DLGELLIS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE
Sbjct: 403 DPRDAQAFLDLGELLISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFE 462
Query: 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480
A + FK+ALGDGIWL +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KV
Sbjct: 463 LAERIFKEALGDGIWLDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKV 522
Query: 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540
T LFNLARLLEQ+H +SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+A
Sbjct: 523 TSLFNLARLLEQLHRIEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDA 582
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 600
LKVN K NALSMLG+LELKNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRN
Sbjct: 583 LKVNDKCSNALSMLGELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRN 642
Query: 601 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660
EKR PKLEATHLEK+KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAA
Sbjct: 643 EKRNPKLEATHLEKSKELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAA 702
Query: 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
SG++FVQMPDVWINLAHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQ
Sbjct: 703 SGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQ 762
Query: 721 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 780
WQDCKK+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRV
Sbjct: 763 WQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRV 822
Query: 781 FSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL 840
FS LSAASNLH HGFDEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ AL
Sbjct: 823 FSQLSAASNLHFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVAL 882
Query: 841 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDD 900
AE+ARRKA+EQ+K+ LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDD
Sbjct: 883 AEDARRKADEQRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDD 941
Query: 901 EVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMND 960
E G+SEKRRRKGGKRRKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+ND
Sbjct: 942 EAGNSEKRRRKGGKRRKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVND 1000
Query: 961 QDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----R 1014
Q DD E N D LA AGLEDSD +DE APS AARRR S+S++DEP + Q R
Sbjct: 1001 QGDDFEGNDQDALAEAGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQR 1060
Query: 1015 DNTDELQDSDGELR 1028
+N+ L+DSDGE+R
Sbjct: 1061 ENSAGLEDSDGEIR 1074
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068420|ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa] gi|222833309|gb|EEE71786.1| PAF1 complex component [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1667 bits (4316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1012 (82%), Positives = 918/1012 (90%), Gaps = 5/1012 (0%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK++QFRQILEEGSS EIDEYYADVRYERIAILNALG YY+YLGK+ETKQRE
Sbjct: 46 IAREYFKQGKLDQFRQILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEE+FI AT++YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS+AF+IVLE DRDNV AL
Sbjct: 106 KEEYFIQATKHYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQACVE++RG Y +SL +KRALQV+P CPGA+RLGIG C YKLG +GKA AFQR
Sbjct: 166 LGQACVEYSRGHYGESLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR--- 222
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDPENVEALV+LA++DLQ NEAA IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF
Sbjct: 223 LDPENVEALVSLAILDLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 282
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE A YY ASVKEINKP EF+FPY
Sbjct: 283 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPY 342
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YGLGQVQLKLG+ ++AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKAAKI
Sbjct: 343 YGLGQVQLKLGEIKNALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKI 402
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 420
DPRDAQAF+DLGELLIS+DTGAALDAFKTAR+LLKK GEEVPIEVLNNI VIHFE+ E E
Sbjct: 403 DPRDAQAFLDLGELLISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELE 462
Query: 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480
A Q+FK+ALGDGIWLT L+ K TY +DA++S+LQ+KDMQ+F R E +G+ VEL WNKV
Sbjct: 463 LALQNFKEALGDGIWLTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKV 522
Query: 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540
T LFNLARLLEQ+H+T AS LYRLILFKY DYVDAYLRLAAIAKARNNL LSIELVNEA
Sbjct: 523 TTLFNLARLLEQLHNTETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEA 582
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 600
L VN K PNALSMLGDLELKNDDWVKAKETFRAAS+ATDGKDSYATLSLGNWNYFAA+RN
Sbjct: 583 LTVNDKCPNALSMLGDLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRN 642
Query: 601 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660
EKR PKLEATHLEKAKELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLFTQVQEAA
Sbjct: 643 EKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAA 702
Query: 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
SGS+FVQMPDVWINLAHVYFAQGNFALA+KMYQNCL+KF+YNTD+QILLYLARTHYEAEQ
Sbjct: 703 SGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQ 762
Query: 721 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 780
WQDCK++LLRAIHL PSNYTLRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+
Sbjct: 763 WQDCKRTLLRAIHLTPSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRL 822
Query: 781 FSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL 840
FS LSAASNL+ +GFDEKKINTHVEYCKHLL+AA +HREAAEREEQQNRQR + ARQ AL
Sbjct: 823 FSQLSAASNLYFNGFDEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMAL 882
Query: 841 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDD 900
AEEARRKAEEQ+K+ LE+RK EDE KR+RQQEEHF+RVKEQW+SST ASKRR+R++ DD
Sbjct: 883 AEEARRKAEEQRKFQLERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDG 942
Query: 901 EVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMND 960
E GH EKRRRKGGKRRKK+KSSRS YE E EADMMD +EPED+DA++N+REP QMND
Sbjct: 943 EGGHGEKRRRKGGKRRKKEKSSRSRYEME--EADMMDDHDEPEDDDANVNFREPGYQMND 1000
Query: 961 QDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ 1012
QDD+ EENA D LAAAGLEDSD DD+ A +A RR+RA SESD+DE ER+
Sbjct: 1001 QDDNAEENAQDVLAAAGLEDSDADDDAAAPSSAGRRKRAWSESDEDEISERK 1052
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550483|ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] gi|223544778|gb|EEF46294.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1639 bits (4244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 832/1048 (79%), Positives = 917/1048 (87%), Gaps = 34/1048 (3%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK+EQFRQILEEGSS +IDEYYADV+Y+RIAILNALG YY+YLGKIETKQRE
Sbjct: 46 IAREYFKQGKLEQFRQILEEGSSNDIDEYYADVKYDRIAILNALGAYYSYLGKIETKQRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEE+FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE+EQA +AFKIVLE DRDNV AL
Sbjct: 106 KEEYFIQATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIEQAYNAFKIVLEGDRDNVSAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQACVE+NR Y++SL+ YKRALQVHP CPG+
Sbjct: 166 LGQACVEYNRSHYNESLKSYKRALQVHPECPGS--------------------------- 198
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDPENVEALV+LA++DLQ NE GIR+GME MQRAFEIYPYCAMALNYLANHFFFTGQHF
Sbjct: 199 LDPENVEALVSLAILDLQTNEVNGIRRGMESMQRAFEIYPYCAMALNYLANHFFFTGQHF 258
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
LVEQLTETALAVTNHGPTKSHS+YNLARSYHSKGDYE A YY ASVKE NKP EF+FPY
Sbjct: 259 LVEQLTETALAVTNHGPTKSHSFYNLARSYHSKGDYETASRYYWASVKETNKPSEFVFPY 318
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YGLGQVQLKLG+ ++AL+NFEKVLE+YPDNCETLK LGHIY QLGQ EKAQE LRKA KI
Sbjct: 319 YGLGQVQLKLGEIKNALSNFEKVLEVYPDNCETLKVLGHIYAQLGQTEKAQEYLRKATKI 378
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 420
DPRDAQAF+DLGELLISSDTGAALDA KTAR+LLKK G EVP+EVLNNIGVI+FE+ E E
Sbjct: 379 DPRDAQAFLDLGELLISSDTGAALDALKTARSLLKKGGHEVPVEVLNNIGVIYFEREELE 438
Query: 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480
A ++FK+A+GDGIWL LD K KTY IDA+AS+L +KDMQ FH+ E DG+ VEL W+KV
Sbjct: 439 LALETFKEAVGDGIWLAFLDGKAKTYTIDAAASILHYKDMQFFHQLEQDGHRVELTWDKV 498
Query: 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540
T LFNLARLLEQ+H+ A+VLY LILFKY DYVDAYLRLAAI+KARNNLQLSIELVNEA
Sbjct: 499 TALFNLARLLEQMHNIETANVLYVLILFKYPDYVDAYLRLAAISKARNNLQLSIELVNEA 558
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 600
LKVN K PNALSMLGDLELKNDDWVKAKETFRAAS+ATDGKDSYA LSLGNWNYFAA+RN
Sbjct: 559 LKVNDKCPNALSMLGDLELKNDDWVKAKETFRAASEATDGKDSYAILSLGNWNYFAAIRN 618
Query: 601 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660
EKR PKLEATHLEKAKELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLF +VQEAA
Sbjct: 619 EKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFMEVQEAA 678
Query: 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
SGS+FVQMPDVWINLAHVYFAQGNFALA+KMYQNCLRKFYY+TD+QILLYLARTHYEAEQ
Sbjct: 679 SGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYSTDSQILLYLARTHYEAEQ 738
Query: 721 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 780
WQ+CKK+LLRAIHLAPSNY LRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+
Sbjct: 739 WQECKKTLLRAIHLAPSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRL 798
Query: 781 FSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL 840
FS LSA+SNLH HGFDEKKINTHVEYCKHLL+AAK+HREAAEREEQQNRQRQE ARQ AL
Sbjct: 799 FSQLSASSNLHFHGFDEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQRQEVARQMAL 858
Query: 841 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDD 900
AEEARRKAEEQKK+LLEKRK EDE KR+RQQEEHF+RVKEQW++STP SKRR+RSE D++
Sbjct: 859 AEEARRKAEEQKKFLLEKRKQEDELKRVRQQEEHFERVKEQWKTSTPGSKRRDRSEVDEE 918
Query: 901 EVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMND 960
E GHSEKRRRKGGKRRKK+KSS+S YE E EADMMD REE EDEDA++NY E ++++
Sbjct: 919 EGGHSEKRRRKGGKRRKKEKSSKSRYEIEEGEADMMDDREELEDEDANVNYGEHKNRLDN 978
Query: 961 QDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQL-----RD 1015
QD+D EENA D LAAAGLEDSD +D APS T ARRRRALSESDDDE + +L R
Sbjct: 979 QDEDAEENAQDLLAAAGLEDSDAED-AAPSST-ARRRRALSESDDDEVLDSKLQSSPVRG 1036
Query: 1016 NTDELQDSDGELRENDHKSNGGAALDDD 1043
N+ ELQ+SDGE+RE K G AA DD+
Sbjct: 1037 NSAELQESDGEIREGADKQYGDAAFDDE 1064
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500473|ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1618 bits (4190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/1034 (78%), Positives = 895/1034 (86%), Gaps = 35/1034 (3%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK+EQFRQILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQRE
Sbjct: 46 IAREYFKQGKLEQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPAL
Sbjct: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQACVEFNRG YS+SLE YKRALQV+P CP A
Sbjct: 166 LGQACVEFNRGHYSESLELYKRALQVYPDCPAA--------------------------- 198
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDPENVEALV LA++DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHF
Sbjct: 199 LDPENVEALVGLAIIDLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHF 258
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
LVEQLTETALA+TNHGPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPY
Sbjct: 259 LVEQLTETALAITNHGPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPY 318
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YGLGQVQLK+GD RSAL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KI
Sbjct: 319 YGLGQVQLKMGDLRSALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKI 378
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 420
DPRDAQAF+DLGELLIS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE
Sbjct: 379 DPRDAQAFLDLGELLISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFE 438
Query: 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480
A + FK+ALGDGIWL +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KV
Sbjct: 439 LAERIFKEALGDGIWLDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKV 498
Query: 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540
T LFNLARLLEQ+H +SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+A
Sbjct: 499 TSLFNLARLLEQLHRIEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDA 558
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 600
LKVN K NALSMLG+LE KNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRN
Sbjct: 559 LKVNDKCSNALSMLGELEXKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRN 618
Query: 601 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660
EKR PKLEATHLEK+KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAA
Sbjct: 619 EKRNPKLEATHLEKSKELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAA 678
Query: 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
SG++FVQMPDVWINLAHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQ
Sbjct: 679 SGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQ 738
Query: 721 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRV 780
WQDCKK+LLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRV
Sbjct: 739 WQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRV 798
Query: 781 FSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAAL 840
FS LSAASNLH HGFDEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ AL
Sbjct: 799 FSQLSAASNLHFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVAL 858
Query: 841 AEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDD 900
AE+ARRKA+EQ+K+ LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDD
Sbjct: 859 AEDARRKADEQRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDD 917
Query: 901 EVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMND 960
E G+SEKRRRKGGKRRKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+ND
Sbjct: 918 EAGNSEKRRRKGGKRRKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVND 976
Query: 961 QDDDVEENANDRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----R 1014
Q DD E N D LA AGLEDSD +DE APS AARRR S+S++DEP + Q R
Sbjct: 977 QGDDFEGNDQDALAEAGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQR 1036
Query: 1015 DNTDELQDSDGELR 1028
+N+ L+DSDGE+R
Sbjct: 1037 ENSAGLEDSDGEIR 1050
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254442|ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana] gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION INDEPENDENCE 6 [Arabidopsis thaliana] gi|330250911|gb|AEC06005.1| protein early flowering 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1552 bits (4019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1033 (74%), Positives = 890/1033 (86%), Gaps = 10/1033 (0%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK+EQFRQILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK RE
Sbjct: 46 IAREYFKQGKIEQFRQILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEE FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPAL
Sbjct: 106 KEEQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQA VEFNRGR+S+SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQ
Sbjct: 166 LGQASVEFNRGRFSESLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQ 225
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDP+NVEALVAL +MDLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHF
Sbjct: 226 LDPDNVEALVALGIMDLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHF 285
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFP 299
LVEQLTETALAVT HGPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FP
Sbjct: 286 LVEQLTETALAVTTHGPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFP 345
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
Y+GLGQVQLKLG+ + ++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K
Sbjct: 346 YFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATK 405
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+DPRDAQAF+ LGELLISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EF
Sbjct: 406 LDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEF 465
Query: 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479
ESA ++FK+ALGDGIW++ LD K + S+L +KD +FHR G+ V++PWNK
Sbjct: 466 ESALENFKEALGDGIWISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNK 523
Query: 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539
VT LFNLARLLEQIH T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNE
Sbjct: 524 VTTLFNLARLLEQIHKTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNE 583
Query: 540 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 599
ALKV+ K PNALS+LG+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+R
Sbjct: 584 ALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMR 643
Query: 600 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 659
NEKR PKLEATHLEKAKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEA
Sbjct: 644 NEKRNPKLEATHLEKAKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEA 703
Query: 660 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 719
ASGSVF+QMPDVW+NLAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAE
Sbjct: 704 ASGSVFLQMPDVWVNLAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAE 763
Query: 720 QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 779
QWQ+CKK+LLRAIHL PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVR
Sbjct: 764 QWQECKKTLLRAIHLTPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVR 823
Query: 780 VFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 839
VF+ LSAAS+LH+HGFD KKI THV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAA
Sbjct: 824 VFTQLSAASDLHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAA 883
Query: 840 LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSEND 898
LAEEARRKAEEQ+KY LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+D
Sbjct: 884 LAEEARRKAEEQRKYQLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDD 943
Query: 899 DDEVGHSEKRRRKGGKRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIG 956
D E SE+RR+KGGKRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE
Sbjct: 944 DGESKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEM 1003
Query: 957 QMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDN 1016
+ ++ V+++A+D LAAAGLED DVDD+ P+ + RRRRALS SD++ + N
Sbjct: 1004 TTQEAEEPVDDDAHDLLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPN 1062
Query: 1017 TD---ELQDSDGE 1026
+ E ++S+GE
Sbjct: 1063 SSPQKEKEESNGE 1075
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835872|ref|XP_002885818.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] gi|297331658|gb|EFH62077.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1499 bits (3882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 747/1033 (72%), Positives = 864/1033 (83%), Gaps = 37/1033 (3%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ REYFKQGK+EQFRQILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK RE
Sbjct: 46 IAREYFKQGKIEQFRQILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKHRE 105
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KEE FILAT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPAL
Sbjct: 106 KEEQFILATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPAL 165
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
LGQA VEFNRGR+S+SL YKRALQV P CP A
Sbjct: 166 LGQASVEFNRGRFSESLNLYKRALQVFPGCPAA--------------------------- 198
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDP+NVEALVAL +MDLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHF
Sbjct: 199 LDPDNVEALVALGIMDLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHF 258
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFP 299
LVEQLTETALAVT HGPTKSHS+YNLARSYHSKGDYEKAG+YYMA++KE NKP EF+FP
Sbjct: 259 LVEQLTETALAVTTHGPTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFP 318
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
Y+GLGQVQLKLG+ + ++ NFEKVLE+YPDNCETLKALGH+Y QLGQ +KA E +RKA K
Sbjct: 319 YFGLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNDKALEYMRKATK 378
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+DPRDAQAF+ LGELLISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EF
Sbjct: 379 LDPRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEF 438
Query: 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479
ESA +FK+ALGDGIW++ LD K + S+L +KD +FHR G+ V++PWNK
Sbjct: 439 ESALDNFKEALGDGIWISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNK 496
Query: 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539
VT LFNLARLLEQ+H T AA+ LY+LILFKY Y+DAYLRLAA AKA+NNL L+IELVNE
Sbjct: 497 VTTLFNLARLLEQLHKTEAATFLYQLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNE 556
Query: 540 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 599
ALKV+ K PNALS+LG+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+R
Sbjct: 557 ALKVDDKNPNALSLLGELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMR 616
Query: 600 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 659
NEKR PKLEATHLEKAKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEA
Sbjct: 617 NEKRNPKLEATHLEKAKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEA 676
Query: 660 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 719
ASGSVF+QMPDVW+NLAHVYFAQGNFALA+KMYQNCLRKF+ NTD+QILLYLARTHYEAE
Sbjct: 677 ASGSVFLQMPDVWVNLAHVYFAQGNFALAVKMYQNCLRKFFNNTDSQILLYLARTHYEAE 736
Query: 720 QWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVR 779
QWQ+CKK+LLRAIHL PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVR
Sbjct: 737 QWQECKKTLLRAIHLTPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVR 796
Query: 780 VFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 839
VF+ LSAAS+LH+HGFD KKI THV+YC HLL+AAK+HREAAEREE QNRQR E ARQAA
Sbjct: 797 VFTQLSAASDLHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAEREELQNRQRLEVARQAA 856
Query: 840 LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSEND 898
LAEEARRKAEEQ+KY LEKRK E+E +RL+Q+EE QR+KEQW+SSTP S KR++R E+D
Sbjct: 857 LAEEARRKAEEQRKYQLEKRKQEEELRRLKQEEEKIQRIKEQWKSSTPGSHKRKDRVEDD 916
Query: 899 DDEVGHSEKRRRKGGKRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIG 956
D E SE+RR+KGGKRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE
Sbjct: 917 DGEGKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEM 976
Query: 957 QMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDN 1016
+ ++ V+++A+D LAAAGLED DV D+ P+ + RRRRALS SD++ + + N
Sbjct: 977 TNQEAEEPVDDDAHDLLAAAGLEDPDVYDDEVPA-SGVRRRRALSSSDEEGELMEESQPN 1035
Query: 1017 ---TDELQDSDGE 1026
T E ++S+GE
Sbjct: 1036 QSPTREKEESNGE 1048
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197768|gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1467 bits (3798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/1080 (69%), Positives = 870/1080 (80%), Gaps = 80/1080 (7%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSP---------------EIDEYYADVRYERIAILNALG 45
+ REYFKQGK+EQFRQILEEGSS +IDEYYADV+YERIAILNALG
Sbjct: 46 IAREYFKQGKIEQFRQILEEGSSSGKQLYDDAASICSRIDIDEYYADVKYERIAILNALG 105
Query: 46 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 105
YY+YLGK ETK REKEE FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A A
Sbjct: 106 AYYSYLGKTETKNREKEEQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQA 165
Query: 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165
FKIVL+ DNVPALLGQA VEFNRGR+S+SL+ YKL
Sbjct: 166 FKIVLDTAPDNVPALLGQASVEFNRGRFSESLQL-----------------------YKL 202
Query: 166 GQLGKARQAFQRA--------------------------------LQLDPENVEALVALA 193
GQL KARQAF R LQLDP+NVEALVAL
Sbjct: 203 GQLDKARQAFDRVLQASGTGMFISSSYDIADCMRQQIVLITIILFLQLDPDNVEALVALG 262
Query: 194 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 253
+MDLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT
Sbjct: 263 IMDLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVT 322
Query: 254 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGD 312
HGPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+
Sbjct: 323 THGPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGE 382
Query: 313 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372
+ ++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LG
Sbjct: 383 LKGSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLG 442
Query: 373 ELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432
ELLISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGD
Sbjct: 443 ELLISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGD 502
Query: 433 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 492
GIW++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQ
Sbjct: 503 GIWISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQ 560
Query: 493 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 552
IH T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS
Sbjct: 561 IHKTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALS 620
Query: 553 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 612
+LG+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHL
Sbjct: 621 LLGELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHL 680
Query: 613 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 672
EKAKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW
Sbjct: 681 EKAKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVW 740
Query: 673 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 732
+NLAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAI
Sbjct: 741 VNLAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAI 800
Query: 733 HLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHL 792
HL PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+
Sbjct: 801 HLTPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHV 860
Query: 793 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQK 852
HGFD KKI THV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+
Sbjct: 861 HGFDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQR 920
Query: 853 KYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRK 911
KY LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+K
Sbjct: 921 KYQLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKK 980
Query: 912 GGKRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENA 969
GGKRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A
Sbjct: 981 GGKRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDA 1040
Query: 970 NDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1026
+D LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1041 HDLLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1099
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1043 | ||||||
| TAIR|locus:2051592 | 1091 | ELF8 "EARLY FLOWERING 8" [Arab | 0.978 | 0.935 | 0.703 | 0.0 | |
| DICTYBASE|DDB_G0277841 | 1106 | ctr9 "RNA polymerase II comple | 0.955 | 0.901 | 0.277 | 1.9e-115 | |
| UNIPROTKB|Q6DEU9 | 1172 | ctr9 "RNA polymerase-associate | 0.405 | 0.360 | 0.385 | 3e-102 | |
| UNIPROTKB|G3V897 | 1173 | Ctr9 "SH2 domain binding prote | 0.523 | 0.465 | 0.340 | 1.5e-80 | |
| MGI|MGI:109345 | 1173 | Ctr9 "Ctr9, Paf1/RNA polymeras | 0.523 | 0.465 | 0.340 | 1.1e-79 | |
| UNIPROTKB|Q6PD62 | 1173 | CTR9 "RNA polymerase-associate | 0.523 | 0.465 | 0.340 | 4.5e-79 | |
| UNIPROTKB|Q4QR29 | 1157 | ctr9 "RNA polymerase-associate | 0.405 | 0.365 | 0.390 | 4.7e-79 | |
| UNIPROTKB|F1S6V3 | 1173 | CTR9 "Uncharacterized protein" | 0.523 | 0.465 | 0.340 | 5.8e-79 | |
| UNIPROTKB|E1C9K0 | 1167 | CTR9 "Uncharacterized protein" | 0.523 | 0.467 | 0.342 | 1.1e-78 | |
| ZFIN|ZDB-GENE-030131-3782 | 1160 | ctr9 "Ctr9, Paf1/RNA polymeras | 0.405 | 0.364 | 0.381 | 2.4e-76 |
| TAIR|locus:2051592 ELF8 "EARLY FLOWERING 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3764 (1330.1 bits), Expect = 0., P = 0.
Identities = 725/1031 (70%), Positives = 840/1031 (81%)
Query: 3 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
REYFKQGK+EQFRQILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKE
Sbjct: 48 REYFKQGKIEQFRQILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKE 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 122
E FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLG
Sbjct: 108 EQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLG 167
Query: 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182
QA VEFNRGR+S+SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLD
Sbjct: 168 QASVEFNRGRFSESLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLD 227
Query: 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 242
P+NVEALVAL +MDLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLV
Sbjct: 228 PDNVEALVALGIMDLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLV 287
Query: 243 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYY 301
EQLTETALAVT HGPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+
Sbjct: 288 EQLTETALAVTTHGPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYF 347
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361
GLGQVQLKLG+ + ++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+D
Sbjct: 348 GLGQVQLKLGELKGSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLD 407
Query: 362 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 421
PRDAQAF+ LGELLISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFES
Sbjct: 408 PRDAQAFVGLGELLISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFES 467
Query: 422 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 481
A ++FK+ALGDGIW++ LD K + S+L +KD +FHR G+ V++PWNKVT
Sbjct: 468 ALENFKEALGDGIWISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVT 525
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
LFNLARLLEQIH T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEAL
Sbjct: 526 TLFNLARLLEQIHKTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEAL 585
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601
KV+ K PNALS+LG+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNE
Sbjct: 586 KVDDKNPNALSLLGELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNE 645
Query: 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661
KR PKLEATHLEKAKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAAS
Sbjct: 646 KRNPKLEATHLEKAKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAAS 705
Query: 662 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 721
GSVF+QMPDVW+NLAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQW
Sbjct: 706 GSVFLQMPDVWVNLAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQW 765
Query: 722 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 781
Q+CKK+LLRAIHL PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF
Sbjct: 766 QECKKTLLRAIHLTPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVF 825
Query: 782 SHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXX 841
+ LSAAS+LH+HGFD KKI THV+YC HLL+AAK+H
Sbjct: 826 TQLSAASDLHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALA 885
Query: 842 XXXXXXXXXXKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDD 900
+KY LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD
Sbjct: 886 EEARRKAEEQRKYQLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDG 945
Query: 901 EVGHSEXXXXXXXXXXXXXXXXXX-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQM 958
E SE HYE + EA MD E EDEDA+ NY RE
Sbjct: 946 ESKPSERRRKKGGKRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTT 1005
Query: 959 NDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD 1018
+ ++ V+++A+D LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+
Sbjct: 1006 QEAEEPVDDDAHDLLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSS 1064
Query: 1019 ---ELQDSDGE 1026
E ++S+GE
Sbjct: 1065 PQKEKEESNGE 1075
|
|
| DICTYBASE|DDB_G0277841 ctr9 "RNA polymerase II complex component" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 292/1051 (27%), Positives = 533/1051 (50%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
+ EY+KQ ++ F ++L++ + ++++YY D + +RIA+LNAL YYT LG E +
Sbjct: 52 LANEYYKQDRITDFIEVLKQVTDADLEQYYKDSKLDRIAMLNALASYYTQLGSQEKDKSR 111
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---- 116
+EE+F AT ++ KA RID H+P TW+GK LLL KG+ E+A S FK VL+ + N
Sbjct: 112 REEYFSNATFHFTKADRIDPHQPLTWIGKAVLLLTKGDYERAESNFKQVLDLAKSNNTLP 171
Query: 117 -VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 175
+PA LG AC+ FN+G Y +L+ Y++ +Q + +C ++RLG+G C +KLG+ KA++AF
Sbjct: 172 VLPAKLGSACILFNQGNYIKALDTYQKVIQQNSNCLPSVRLGLGYCYFKLGRTKKAKEAF 231
Query: 176 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235
+R L+LD +NVEA++ LA++ + N+ I + M+ + A+++ P ++ LN+LANH+FF
Sbjct: 232 KRVLELDRDNVEAMIGLALVLMNENQ---IPEAMKLILSAYQLAPTNSIVLNHLANHYFF 288
Query: 236 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 295
G++ V L A T+ K+ S Y + R++H+ ++ A YY +V++ P
Sbjct: 289 RGEYNKVNTLGVAAFNNTDVAHIKAESAYLIGRAFHATQRWQDAIQYYHQAVQK--NPDL 346
Query: 296 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355
++ +GLGQ+ + D+ A+ FE+VL P+N ETL+ LG +Y G + K+
Sbjct: 347 YL-AQFGLGQIHIHNEDYDKAILCFEQVLSKQPNNYETLQILGSLYKH-GSLYKSN---- 400
Query: 356 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN--NIGVIH 413
+ + I+++ + + + +LKKA E P + N +G +
Sbjct: 401 -VKSTTTTTSTTTTTNNNININNNNNLSNEIINKIKNVLKKATELNPNDSSNWFELGQV- 458
Query: 414 FEKGEFESAHQSFKDALG----DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 469
E E +A ++++ L DGI + L+ + V+ +L + +
Sbjct: 459 LESTEVSTALEAYEKGLNLLKKDGI-VPSLEIQNNIAVLRHQKGLLVEAEQTYLDIIKQS 517
Query: 470 GNHV-ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 528
G + + +T +NLARL E + A LY+ I+ ++ +Y D YLRL+ I K +
Sbjct: 518 GYQLNQFKSINITSTYNLARLYETMGQVNKAEELYKGIIKEHPNYYDCYLRLSCICKQQG 577
Query: 529 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK-DSYATL 587
+ + E + E L + A ++ G+L L ++W A++ F ++ D K ++YA+L
Sbjct: 578 DYYEAGEWIREVLDIQPDNQEAWALYGNLHLYKEEWYPAQKNFEQITENPDNKNETYASL 637
Query: 588 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 647
SLGN Y A N + K ++ A++ Y RV+ ++ +N+YAANG G+++AEKG +
Sbjct: 638 SLGNIYYNAKFSNPDKVEK----YILNAEQFYNRVLTKNPTNIYAANGIGMIIAEKGNLN 693
Query: 648 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ- 706
++ + F Q++EA+ + P V +NLAH+Y ++G F A+K+Y+ CL+K + +
Sbjct: 694 LAGETFLQIREASMDCI----P-VSVNLAHIYVSKGLFDNAIKLYEGCLKKSTSPKEIET 748
Query: 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 766
I++YLA+ +++A ++ D K++L +AIH+ P N ++ F+ ++++ + L+K ++ A E
Sbjct: 749 IIMYLAKVYFDANRFYDSKQTLKKAIHMYPHNLSIHFNLAISIEMQATIFLEKHQKNATE 808
Query: 767 VRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKI-HXXXXXXXX 825
+ + ELE A R+ + L+ + F K TH + +L + + H
Sbjct: 809 TFNIIKELEFAQRLLTPLANTKSTPKLNFSPSKAKTHQTSIEKILVSLRTEHESIVKIEA 868
Query: 826 XXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQEEHFQR-------- 877
K LE+ KLE E+K ++EE +
Sbjct: 869 DLSKKREAAFEEVKRLEEEKRIRDLELKQQLEE-KLEAERKLAFEEEEKTREELAKNNAA 927
Query: 878 ---VKEQWRSSTPAS-KRRERSENDDDEVGHSEXXXXXXXXXXXXXXXXXXHYETEYAEA 933
+ + ++ S K+R++++ D + + E E
Sbjct: 928 AAMIDDDYKDGEGGSTKKRKKNKKDQQQQDDDFDDQPAESKKKQKKEKKEKKEKKEKKEK 987
Query: 934 DMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITA 993
+ E E+ + + + Q + +D + + + + D D+
Sbjct: 988 KKKSKKVSGEGEEGADDNNDTEQQQEEMAEDGDHKEKKKKKKSKKDRKDKKDKKQKRKEK 1047
Query: 994 ARRRRALSESDDDEPFERQLRDNTDELQDSD 1024
+R + E ++D+ E + +N +E QD D
Sbjct: 1048 KQREKEEREGEEDD--ENEETENREE-QDDD 1075
|
|
| UNIPROTKB|Q6DEU9 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 3.0e-102, Sum P(3) = 3.0e-102
Identities = 167/433 (38%), Positives = 249/433 (57%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EY+KQ K E F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYYKQVKTEDFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
E AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PALL
Sbjct: 108 ELITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+P V ALV LAV++L EA I+ G++ + +A+ I P M LN+LANHFFF +
Sbjct: 228 NPTCVGALVGLAVLELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 346 GLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 EQYPDDVEAWIELAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLG 465
Query: 418 EFESAHQSFKDAL 430
A + F +L
Sbjct: 466 NLGEAKKYFLASL 478
|
|
| UNIPROTKB|G3V897 Ctr9 "SH2 domain binding protein 1 (Tetratricopeptide repeat containing), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.5e-80, Sum P(2) = 1.5e-80
Identities = 191/561 (34%), Positives = 297/561 (52%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EY+KQGK E+F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYYKQGKTEEFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
+ AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PALL
Sbjct: 108 DLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALEL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 228 NSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 346 GLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 EQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLG 465
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV-- 473
A + F +L D + + S ++ + ++ M FH E ++
Sbjct: 466 NLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILR 525
Query: 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 533
E P N V L + + AS ++ L QD+ DA+ + + A+
Sbjct: 526 EHP-NYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPG 584
Query: 534 IELVNEALKVNGKYPNALSML 554
+ LK + SML
Sbjct: 585 QKKFERILKQPATQSDTYSML 605
|
|
| MGI|MGI:109345 Ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.1e-79, Sum P(2) = 1.1e-79
Identities = 191/561 (34%), Positives = 297/561 (52%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EY+KQGK E+F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYYKQGKTEEFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
+ AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PALL
Sbjct: 108 DLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALEL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 228 NSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 346 GLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 EQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLG 465
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV-- 473
A + F +L D + + S ++ + ++ M FH E ++
Sbjct: 466 NLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILR 525
Query: 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 533
E P N V L + + AS ++ L QD+ DA+ + + A+
Sbjct: 526 EHP-NYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPG 584
Query: 534 IELVNEALKVNGKYPNALSML 554
+ LK + SML
Sbjct: 585 QKKFERILKQPATQSDTYSML 605
|
|
| UNIPROTKB|Q6PD62 CTR9 "RNA polymerase-associated protein CTR9 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 4.5e-79, Sum P(2) = 4.5e-79
Identities = 191/561 (34%), Positives = 297/561 (52%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EY+KQGK E+F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYYKQGKTEEFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
+ AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PALL
Sbjct: 108 DLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALEL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 228 NSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 346 GLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 EQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLG 465
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV-- 473
A + F +L D + + S ++ + ++ M FH E ++
Sbjct: 466 NLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILR 525
Query: 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 533
E P N V L + + AS ++ L QD+ DA+ + + A+
Sbjct: 526 EHP-NYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPG 584
Query: 534 IELVNEALKVNGKYPNALSML 554
+ LK + SML
Sbjct: 585 QKKFERILKQPSTQSDTYSML 605
|
|
| UNIPROTKB|Q4QR29 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 4.7e-79, Sum P(2) = 4.7e-79
Identities = 169/433 (39%), Positives = 250/433 (57%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EYFKQGK E F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYFKQGKTEDFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
E AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PALL
Sbjct: 108 ELITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+P V ALV LAV++L EA I+ G++ + +A+ I P M LN+LANHFFF +
Sbjct: 228 NPTCVGALVGLAVLELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 346 GLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 EQYPDDVEAWIELAQILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLG 465
Query: 418 EFESAHQSFKDAL 430
A + F +L
Sbjct: 466 NLGEAKKYFLASL 478
|
|
| UNIPROTKB|F1S6V3 CTR9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 5.8e-79, Sum P(2) = 5.8e-79
Identities = 191/561 (34%), Positives = 297/561 (52%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EY+KQGK E+F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYYKQGKTEEFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
+ AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PALL
Sbjct: 108 DLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALEL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 228 NSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 346 GLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 EQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLG 465
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV-- 473
A + F +L D + + S ++ + ++ M FH E ++
Sbjct: 466 NLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILR 525
Query: 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 533
E P N V L + + AS ++ L QD+ DA+ + + A+
Sbjct: 526 EHP-NYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPG 584
Query: 534 IELVNEALKVNGKYPNALSML 554
+ LK + SML
Sbjct: 585 QKKFERILKQPSTQSDTYSML 605
|
|
| UNIPROTKB|E1C9K0 CTR9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
Identities = 192/561 (34%), Positives = 296/561 (52%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EY+KQGK E F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYYKQGKTEDFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
E AT Y A +I M++ + +G+ L +G+ ++QA + F VL +N+PALL
Sbjct: 108 ELITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALEL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 228 NSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYGK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + GD +A FEKVL+ YP+N ET+K LG +Y EK A+ L+K
Sbjct: 346 GLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 EQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLG 465
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYV-IDASASMLQ-FKDMQLFHRFENDGNHV-- 473
A + F +L D + + S ++ + ++ M FH E ++
Sbjct: 466 NLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILR 525
Query: 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 533
E P N V L + + AS ++ L QD+ DA+ + + A+
Sbjct: 526 EHP-NYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPG 584
Query: 534 IELVNEALKVNGKYPNALSML 554
+ LK + SML
Sbjct: 585 QKKFERILKQPSTQNDTYSML 605
|
|
| ZFIN|ZDB-GENE-030131-3782 ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 730 (262.0 bits), Expect = 2.4e-76, Sum P(2) = 2.4e-76
Identities = 165/433 (38%), Positives = 251/433 (57%)
Query: 4 EYFKQGKVEQFRQILEEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
EY+KQGK E F ++LE +D Y D +++ L+ L YY + E + K+
Sbjct: 50 EYYKQGKTEDFVKLLEAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKK 107
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALL 121
+ +T Y A +I M++ + +G+ L +G+ ++QA + F+ VL +N+PALL
Sbjct: 108 DLINQSTLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALL 167
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+AC+ FN+ Y +L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L
Sbjct: 168 GKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALEL 227
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+ + V ALV LAV++L EA I+ G++ + RA+ I P M LN+LANHFFF +
Sbjct: 228 NSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSK 287
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
V+ L A T ++ S Y LARS+H + DY++A YY + + + F+ P++
Sbjct: 288 VQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASST--FVLPFF 345
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAA 358
GLGQ+ + D +A FEKVL+ YP+N ET+K LG +Y EK A+E L+K
Sbjct: 346 GLGQMYVYRRDKENAAQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVT 405
Query: 359 KIDPRDAQAFIDLGELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKG 417
D +A+I+L ++L +D AL A+ TA R L +K +VP E+LNN+G +HF G
Sbjct: 406 VQYSDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLG 465
Query: 418 EFESAHQSFKDAL 430
A + F +L
Sbjct: 466 NLGEAKKYFLASL 478
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1043 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-26 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-23 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-10 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-09 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 5e-09 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 4e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 5e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-04 | |
| TIGR02795 | 117 | TIGR02795, tol_pal_ybgF, tol-pal system protein Yb | 7e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 8e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.001 | |
| pfam13371 | 73 | pfam13371, TPR_9, Tetratricopeptide repeat | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.002 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.002 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.002 | |
| COG3118 | 304 | COG3118, COG3118, Thioredoxin domain-containing pr | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| COG3071 | 400 | COG3071, HemY, Uncharacterized enzyme of heme bios | 0.003 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.003 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.004 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-26
Identities = 151/707 (21%), Positives = 256/707 (36%), Gaps = 101/707 (14%)
Query: 94 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 153
L G++E A +++ L D ++ A LG A + R+ ++ L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 213
+ L L LG + A A+++A+ L P N+ L+ALA + ++A E K + +
Sbjct: 196 LLLKGDLLLS-LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 214 RAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 270
+ P Y +++ ++ E ET P + S
Sbjct: 255 KKAPNSPLAHYLKALVDFQKKNY---------EDARETLQDALKSAPEYLPALLLAGASE 305
Query: 271 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330
+ G+ E+A Y +K P+ L +QL+LG A+ L + PD+
Sbjct: 306 YQLGNLEQAYQYLNQILKYA--PN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362
Query: 331 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS----------DT 380
L LG Y+ LG EKA E L KA ++DP +A A LG +S +T
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422
Query: 381 GAALD----------------------AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 418
A LD A A+ L KK + + L +G I+ KG+
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL--LGAIYLGKGD 480
Query: 419 FESAHQSFKDALG-------DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 471
A ++F+ AL L +D + + ++ +F+ + D
Sbjct: 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEG----NPDDAIQRFEKVLTI-----DPK 531
Query: 472 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 531
++ + LA L + + A ++ L LA + L+
Sbjct: 532 NLR-------AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584
Query: 532 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGKDSYATLSLG 590
++ ++NEA P A MLG +L D KA +F+ + D + L+
Sbjct: 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
Query: 591 NW---NYFAALRNEKRAPK----------------LEATHLEKAKELYTRVIVQHTSNLY 631
NY A+ + KRA + L A E AK++ + QH
Sbjct: 645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704
Query: 632 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 691
G + + + + + + + A S I L A GN A A+K
Sbjct: 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA------IKLHRALLASGNTAEAVKT 758
Query: 692 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738
+ L+ + DA + LA + + + K + AP N
Sbjct: 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-23
Identities = 120/545 (22%), Positives = 214/545 (39%), Gaps = 48/545 (8%)
Query: 39 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 98
A L+ LG YL + ++ A +Y KA+ +D + G L++G+
Sbjct: 364 AALSLLG--EAYLALGDFEK---------AAEYLAKATELDPENAAARTQLGISKLSQGD 412
Query: 99 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 158
+A + + + D + A L G++ +L K+ + P L +
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-L 471
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218
G G L KAR+AF++AL ++P+ A LA +D+Q + + ++ I
Sbjct: 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ---RFEKVLTI 528
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 278
P A+ LA + TG E A + P + LA+ Y KG +K
Sbjct: 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKK 585
Query: 279 AGLYYMASVKEINKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337
A +A + E + LG+ QL GD A+++F+K+L + PD+ L L
Sbjct: 586 A----LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
Query: 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 397
Y + KA L++A ++ P + +A I L +LL+ A K A++L K+
Sbjct: 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL--AAKRTESAKKIAKSLQKQH 699
Query: 398 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 457
+ L G ++ + ++ +A Q+++ AL + + S + ++
Sbjct: 700 PKAALGFEL--EGDLYLRQKDYPAAIQAYRKAL----------KRAPS-----SQNAIKL 742
Query: 458 KDMQLFHRFENDGNHVELPW-----NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 512
L + W N + LA L D A Y+ ++ K D
Sbjct: 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 513 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 572
LA + + + ++E ALK+ P L LG L ++ + +A R
Sbjct: 803 NAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861
Query: 573 AASDA 577
A +
Sbjct: 862 KAVNI 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-14
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
NL Y+ GDY++A YY ++ E++ + YY L KLG + AL ++EK
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKAL-ELD--PDNADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
LE+ PDN + LG Y +LG+ E+A E KA ++DP
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 142/708 (20%), Positives = 242/708 (34%), Gaps = 120/708 (16%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
+ F A ++ + + + P K + K E A + L++ + +PAL
Sbjct: 239 EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
L E+ G + ++ + L+ P+ A RL + + +LG++ +A AL
Sbjct: 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPALG 357
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
LDP++ AL L L + K E + +A E+ P A A L G
Sbjct: 358 LDPDDPAALSLLGEAYLALGDFE---KAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHE 295
ETA + P + L SY G ++KA +A+ K++ +
Sbjct: 415 EAIADLETAAQLD---PELGRADLLLILSYLRSGQFDKA----LAAAKKLEKKQPDNAS- 466
Query: 296 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355
+ LG + L GD A FEK L I PD L I +Q G + A +
Sbjct: 467 ---LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523
Query: 356 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIH 413
K IDP++ +A + L L + A L+KA E P IE + +
Sbjct: 524 KVLTIDPKNLRAILALAGLY------LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
Query: 414 FEKGEFESAHQSFKDALGDG-----IWLTLLDS---------------KTKTYVIDASAS 453
KG+ + A +A WL L + K D++ +
Sbjct: 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637
Query: 454 MLQFKDMQLFHR------------FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 501
+L D + E ++ E LA+LL T +A
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEA-------QIGLAQLLLAAKRTESAKK 690
Query: 502 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----------------NG 545
+ + + ++ + + + + +I+ +ALK +G
Sbjct: 691 IAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASG 750
Query: 546 KYPNA-----------------LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 588
A + L +L L D+ KA + ++ D+ L
Sbjct: 751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA--PDNAVVL- 807
Query: 589 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 648
N A L E + P+ + E+A +L + + G +L EKG+ D
Sbjct: 808 ----NNLAWLYLELKDPRALE-YAERALKL-------APNIPAILDTLGWLLVEKGEADR 855
Query: 649 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696
+ L + A + + +LA A G A A K L
Sbjct: 856 ALPLLRKAVNIAPEA-----AAIRYHLALALLATGRKAEARKELDKLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-13
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
LG + KLGD+ AL +EK LE+ PDN + L Y +LG+ E+A E KA +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 360 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKK 396
+DP +A+A+ +LG AL+A++ A L
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-11
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
+ G L G+ ++A ++ LE D DN A A + G+Y ++LE Y++AL+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184
+ P A +GL YKLG+ +A +A+++AL+LDP
Sbjct: 63 LDPDNAKAYYN-LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 14/257 (5%)
Query: 175 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHF 233
+ ALQ DP + EA L + A G EK +++A + L LA +
Sbjct: 45 LKNALQKDPNDAEARFLLG----KIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
Query: 234 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 293
G+ V + + G + + LA Y G E A Y ++
Sbjct: 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA--YLGLGQLELAQKSYEQALA---ID 155
Query: 294 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353
++ GL Q+ L F A ++VL P N + L G + + LG IE A
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 354 LRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 413
RKA + P + + L +LI G +A K A LLKKA L ++
Sbjct: 216 YRKAIALRPNNIAVLLALATILIE--AGEFEEAEKHADALLKKAPNSPLAHYLK--ALVD 271
Query: 414 FEKGEFESAHQSFKDAL 430
F+K +E A ++ +DAL
Sbjct: 272 FQKKNYEDARETLQDAL 288
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-09
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 391
E L LG++Y +LG ++A E KA ++DP +A A+ +L L ++ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK------LGKYEEAL 54
Query: 392 TLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
+KA E P + N+G+ +++ G++E A ++++ AL
Sbjct: 55 EDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
+ S LA + + +GD + L + + G Q++ G+F A
Sbjct: 63 NPEDLSIAKLATALYLRGD-ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEA 119
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376
++ K + P + E LG QLG+ ++A+ R+A ++ P + +LG L+
Sbjct: 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179
Query: 377 SSDTGAALDAFKTARTLLKKA 397
+ A TLL A
Sbjct: 180 LRGD------LEDAETLLLPA 194
|
Length = 257 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 34/133 (25%), Positives = 44/133 (33%), Gaps = 38/133 (28%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
L L+ GD+ A N EK LE P H Y +LG+ + A E RKA
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+ P + +VLNN G +G
Sbjct: 98 LAPNNG--------------------------------------DVLNNYGAFLCAQGRP 119
Query: 420 ESAHQSFKDALGD 432
E A Q F+ AL D
Sbjct: 120 EEAMQQFERALAD 132
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 178
ALL + + G Y ++LE+Y++AL++ P + YKLG+ +A + +++A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-DAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 179 LQLDPENVEALVALAVMDLQANE 201
L+LDP+N +A L + + +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-08
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
L L+ GD A N +K LE PD+ AL Y QLG++EKA++ R+A ++P
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 363 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE----EVPIEVLNNIGVIHFEKGE 418
+ + G L ++ A ++A E P L N G+ + G+
Sbjct: 97 NNGDVLNNYGTFLCQ------QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 419 FESAHQSFKDAL 430
F+ A + AL
Sbjct: 151 FDKAEKYLTRAL 162
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-08
Identities = 79/401 (19%), Positives = 130/401 (32%), Gaps = 76/401 (18%)
Query: 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119
+E + A Q + K ID + L L G E+A + + E + +
Sbjct: 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569
Query: 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179
L A +G+ +L A P P A + +G + G L KA +F++ L
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLL 628
Query: 180 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ- 238
L P++ AL+ LA A ++RA E+ P A LA +
Sbjct: 629 ALQPDSALALLLLADAYAVMKNYAKAIT---SLKRALELKPDNTEAQIGLAQLLLAAKRT 685
Query: 239 -----------------HFLVEQLTETALAVTNHGP-----TKSHSYY-------NLARS 269
E + L ++ K+ L R+
Sbjct: 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 329
+ G+ +A A +K L ++ L D+ A+ +++ V++ PD
Sbjct: 746 LLASGNTAEAVKTLEAWLKTHPNDA---VLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 330 NCETL-------------KALGH--------------------IYVQLGQIEKAQELLRK 356
N L +AL + + V+ G+ ++A LLRK
Sbjct: 803 NAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862
Query: 357 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 397
A I P A L L+ A AR L K
Sbjct: 863 AVNIAPEAAAIRYHLALALL------ATGRKAEARKELDKL 897
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 45/207 (21%)
Query: 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 209
IR+ + L + G L A++ +AL+ DP++ A +ALA+ L E
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-------- 82
Query: 210 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 269
+A + + AL + + N
Sbjct: 83 ----KAEDSF---------------------------RRALTLNPNNGD---VLNNYGTF 108
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 329
+G YE+A + ++++ P G LK GDF A + L+I P
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPAR-SLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
Query: 330 NCETLKALGHIYVQLGQIEKAQELLRK 356
E+L L +Y GQ + A+ L +
Sbjct: 168 RPESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696
G + + G +D + + + + E D + NLA Y+ G + A++ Y+ L
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 697 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 737
+A+ L +Y+ ++++ ++ +A+ L P+
Sbjct: 62 E--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
K + A +YY KA +D + G+ E+A ++ LE D DN A
Sbjct: 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPS 149
+ G+Y ++LE Y++AL++ P+
Sbjct: 72 YNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 38/204 (18%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEE 63
Y +QG +E ++ L++ + E D AL +YY LG++E +
Sbjct: 40 GYLEQGDLEVAKENLDK--ALEHDPDDYLAY-------LALALYYQQLGELEKAEDSFRR 90
Query: 64 -----------------------HFILATQYYNKASRIDM--HEPSTWVGKGQLLLAKGE 98
+ A Q + +A + + G L G+
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 99 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 158
++A L+ D +LL A + + RG+Y D+ + +R Q + ++ LGI
Sbjct: 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGI 210
Query: 159 GLCRYKLGQLGKARQAFQRALQLD 182
+ R LG A + QL
Sbjct: 211 RIAR----ALGDVAAAQRYGAQLQ 230
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-07
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 215
L +G YKLG +A + +++AL+LDP+N +A LA + + + +E ++A
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKA 60
Query: 216 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 252
E+ P A A L ++ G++ + E AL +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAA 358
LG KLGD+ A+ +EK LE+ PDN E L Y++LG E+A E L KA
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 359 KIDP 362
++DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQ 173
DN AL F G Y +++E Y++AL++ P + L KLG +A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA-EAYYNLALAYLKLGKDYEEALE 59
Query: 174 AFQRALQLDP 183
++AL+LDP
Sbjct: 60 DLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 68/380 (17%), Positives = 127/380 (33%), Gaps = 44/380 (11%)
Query: 311 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
+++A+ + L+ P++ E LG IY+ LG A++ LRKA + Q
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 371 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
L + + +TLL G E+L G+ + G+ E A +S++ AL
Sbjct: 96 LARAYLLQGKFQQVLDELPGKTLLDDEGA---AELLALRGLAYLGLGQLELAQKSYEQAL 152
Query: 431 GDGI---------------------WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 469
L+D + A +L+ + E
Sbjct: 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212
Query: 470 ----GNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 524
+ L N + VL LA L+E A L+ + YL+ A +
Sbjct: 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVD 271
Query: 525 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 584
+ N + + E + +ALK +Y AL + G E + + +A +
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQ 330
Query: 585 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 644
A L + +L +++A + + + A + G G
Sbjct: 331 ARRLLA-------------SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377
Query: 645 QFDVSKDLFTQVQEAASGSV 664
F+ + + + E +
Sbjct: 378 DFEKAAEYLAKATELDPENA 397
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 729
+ +NL ++Y+ G++ A++ Y+ L +A LA +Y+ ++++ +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 730 RAIHLAPSNYTLRFDAGVAMQK 751
+A+ L P N ++ G+A K
Sbjct: 59 KALELDPDNAKAYYNLGLAYYK 80
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 352
L V +LGD+ AL EK LE+ P+ L L +Y+ LG ++A E
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 353 LLRKAAKIDPR 363
L KA +
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 124
+ A + KA D + + GE + A +++ L +N L
Sbjct: 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110
Query: 125 CVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182
+GR ++++ ++RAL + + +GLC K GQ +A + +RAL+LD
Sbjct: 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTL-ENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQ 213
P+ AL+ LA + +A + A R +E+ Q
Sbjct: 170 PQFPPALLELARLHYKAGDYAPARLYLERYQ 200
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
L NL L ++ D A Y L D DAY LAA + ++E +AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
+++ A LG K + +A E + A
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 2e-05
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 16/226 (7%)
Query: 737 SNYTLRFDAGVAMQKFSASTLQKT--RRTADEVRST--VAELENAVRVFSHLSAASNLHL 792
+++ R A A + A L+K ++ ADE + + + A + A
Sbjct: 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
Query: 793 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA-----EEARRK 847
+ KK + K + AK EAA+ E + EAA + A A EEA++K
Sbjct: 1323 KAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Query: 848 AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEK 907
A+ KK EK+K ++ +++ E ++ ++ + + A K+ + ++ +E +++
Sbjct: 1380 ADAAKKKAEEKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 908 RRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYRE 953
++K + +K D++ + E + AE E + ++A E
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 2e-05
Identities = 30/128 (23%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 811 LDAAKIHREAAEREEQQNRQRQEAARQAA----LAEEARRKAEEQKKYLLEKRKLEDEQK 866
+AA+ EAAE+++++ +++ +AA++ A A+EA++KAEE KK E +K +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 867 RLRQQEEHFQRVK--EQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 924
+ + ++ + K ++ + +K+ + ++ +E +E+ ++K + +K D++ +
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 925 HYETEYAE 932
E + A+
Sbjct: 1479 AEEAKKAD 1486
|
Length = 2084 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (110), Expect = 2e-05
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 5/259 (1%)
Query: 107 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKL 165
+ + + + + L + G +++LE + AL++ P+ A L + L KL
Sbjct: 13 EALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKL 72
Query: 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225
G+L +A + ++AL+L+ A AL + L + +E +++A + P +A
Sbjct: 73 GRLEEALELLEKALELELLPNLAE-ALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131
Query: 226 LNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 284
LA + G + +L E AL + + + L + G YE+A
Sbjct: 132 EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191
Query: 285 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344
++K P + LG + LKLG + AL +EK LE+ PDN E L L + ++L
Sbjct: 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
Query: 345 GQIEKAQELLRKAAKIDPR 363
G+ E+A E L KA ++DP
Sbjct: 250 GRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK----PHEFIFPYYGLGQVQLKLGD 312
P + + NLA GDY++A +++ + E L ++ L LGD
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 313 FRSALTNFEKVLEIYPD 329
+ AL EK L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (109), Expect = 3e-05
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Query: 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191
+L AL + A+ LG+L +A + + AL+L P + A +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 192 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 251
L + + + + +E +++A E+ +A L E L A
Sbjct: 63 LLLAL-ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 252 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311
+ + + GDYE+A Y +++ + +E LG + LG
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 312 DFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
+ AL EK L++ PD+ E L LG +Y++LG+ E+A E KA ++DP +A+A +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 371 LGELL 375
L LL
Sbjct: 242 LALLL 246
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS--DTGAALDA 386
DN E LK LG+ +LG ++A E KA ++DP +A+A+ +L + D AL+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 387 FKTARTL 393
+ A L
Sbjct: 61 LEKALEL 67
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 48/235 (20%)
Query: 209 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 268
+ + ++ E+ P + A+ G E+ + AL + YY+ A+
Sbjct: 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQ 407
Query: 269 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 328
+ KG++ +AG Y K I+ +FIF + LG Q K G S++ F + + +P
Sbjct: 408 LHFIKGEFAQAGKDYQ---KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
Query: 329 DNCETLKALGHIYVQLGQIEKAQE------------------------------------ 352
+ + G + + + ++A E
Sbjct: 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524
Query: 353 -----LLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEV 401
L KA IDP A + +LL+ D AL F+ A L + GE V
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 336 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLL 394
L Y++ G +E A+E L KA + DP D A++ L + A D+F+ A TL
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 395 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432
G +VLNN G ++G++E A Q F+ A+ D
Sbjct: 96 PNNG-----DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 5e-05
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 10/221 (4%)
Query: 180 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF---EIYPYCAMALNYLANHFFFT 236
+LD E + L + ++ + ++A ++ A+ALN
Sbjct: 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344
Query: 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 296
G+H +E L + + ++ P + SY A GD +KA + ++K ++ +
Sbjct: 345 GKH--LEALADLSKSI-ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
Query: 297 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 356
YY Q+ G+F A +++K +++ PD + LG + G I + R+
Sbjct: 402 ---YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458
Query: 357 AAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKK 396
K P + GELL+ + A++ F TA L K+
Sbjct: 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 55/296 (18%), Positives = 94/296 (31%), Gaps = 54/296 (18%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-ACV 126
A +A + +G QLLLA E A K L+ +
Sbjct: 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS-LQKQHPKAALGFELEGDL 712
Query: 127 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA---LQLDP 183
+ Y +++ Y++AL+ PS AI+L L G +A + L+ P
Sbjct: 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL-----LASGNTAEAVKTLEAWLKTHP 767
Query: 184 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 243
+ ALA + L + K ++ Q + P A+ LN
Sbjct: 768 NDAVLRTALAELYLAQKDYD---KAIKHYQTVVKKAPDNAVVLN---------------- 808
Query: 244 QLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 303
NLA Y + +A Y ++K +
Sbjct: 809 ---------------------NLAWLYL-ELKDPRALEYAERALKLAPNIPAILDTL--- 843
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
G + ++ G+ AL K + I P+ L + G+ +A++ L K
Sbjct: 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
L A G Y ++L + AL +P A L +G + G+L +A + AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEA-LLLLGEALLRQGRLAEAAALLRAALA 59
Query: 181 LDPEN 185
DP++
Sbjct: 60 ADPDD 64
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
L + L+ GD+ AL E L YP E L LG ++ G++ +A LLR A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 361 DPRDA 365
DP D
Sbjct: 61 DPDDP 65
|
Length = 65 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YYGLGQVQLKLGDFRSALTN 319
YN A + GDY +A + A +K P+ P YY LG+ GD+ A
Sbjct: 143 KLYNAALDLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYI 200
Query: 320 FEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
F +V++ YP + + L LG +LG ++A L++ K P A
Sbjct: 201 FARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251
|
Length = 262 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 2e-04
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 34 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG-QL 92
+ + +L L LG + + EE A + KA +D
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEE----ALELLEKALALDPDPDLAEALLALGA 139
Query: 93 LLAKGEVEQASSAFKIVLEAD---RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
L G+ E+A ++ LE D + ALL + GRY ++LE ++AL+++P
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199
Query: 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 209
L +GL KLG+ +A + +++AL+LDP+N EAL LA++ L+ + +
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
Query: 210 EKMQRAFEIY 219
EK
Sbjct: 260 EKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 27/230 (11%)
Query: 813 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 872
AA R+ +Q AA+ A A + E Q R R++
Sbjct: 78 RRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA----ASAPEAAQARERRER 133
Query: 873 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAE 932
R ++ + + D E E+R + + ++D+ + AE
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE-------AE 186
Query: 933 ADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSIT 992
REE + + R+ Q + +++ + DR D
Sbjct: 187 RGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG-----D 241
Query: 993 AARRRRALSESDDDEPF-----------ERQLRDNTDELQDSDGELREND 1031
R R + DD E +R+ R D + + ELRE+D
Sbjct: 242 DNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
Length = 672 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 797 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 856
++ VE K K E ++ E++N+ + AA +A AEE ++KAEE KK
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 857 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH--SEKRRRKGGK 914
+++K + K+ E + E+ + K++ +E +E+ +++ +
Sbjct: 1686 DEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 915 RRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDR 972
+KK + ++ E E + + EE + E+ I + D++D+ D+
Sbjct: 1742 DKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
Length = 2084 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
A + ++KA +++ +P + + QL KGE QA ++ ++ D D + + + +
Sbjct: 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443
Query: 128 FNRGRYSDSLEFYKRALQVHPSCP 151
+ G + S+ ++R + P P
Sbjct: 444 YKEGSIASSMATFRRCKKNFPEAP 467
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 815 KIHREAAEREEQQ--NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 872
K+ ++A E E+Q+ + RQ+ Q A AE+A ++AE+ K EK+K +E K +Q
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK--AKQA 129
Query: 873 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKD 919
+ E + ++++E + +E +++ ++K +
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCK 725
+ NL + F G++ A++ Y+ L +A+ LA + + + +++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE--LDPDNAEAYYNLALAYLKLGKDYEEAL 58
Query: 726 KSLLRAIHLAP 736
+ L +A+ L P
Sbjct: 59 EDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (104), Expect = 4e-04
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 813 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK--RLRQ 870
A + R+ ++ R A RQAA+ E RKA+E KK EK+K ++ +K ++
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-AEEKKKADEAKKAEEKKK 1303
Query: 871 QEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYET-- 928
+E ++ +E ++ K E + D +E+ ++ + + +++ E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 929 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEEN 968
E AEA E + DA+ E + ++ EE+
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
Length = 2084 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
Query: 818 REAAEREEQQNRQRQEAARQA-ALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQ 876
ER E R+ R+ L E+ +E+ + E +LE+ + L + E
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
Query: 877 RVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMM 936
+ + R E +E+ E +R + + ++ + + E ++
Sbjct: 880 NERAS--LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Query: 937 -DYREEPEDEDASMNYREPIGQMNDQDDDVEE 967
D +E E+ S+ E N +DD EE
Sbjct: 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330
Y LG LKLG + AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FP--------YYGLGQVQLKLGD 312
YY+ A GDY A I F+ +P +Y LG+ GD
Sbjct: 3 YYDAALLVLKAGDYADA----------IQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGD 52
Query: 313 FRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ A F V++ YP + + L LG +LG EKA+ L++ K P + A
Sbjct: 53 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQI--EKAQELLRKAAK 359
LG+ + LG AL + L + DN E L L Q GQ KA+ LLR+A
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 360 IDPRDAQA 367
+DP + +A
Sbjct: 222 LDPANIRA 229
|
Length = 287 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148
+ L G+ ++A +A + L ALL +GR +++ + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 149 S 149
Sbjct: 63 D 63
|
Length = 65 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 98 EVEQASSAFKIVLEADRDNVP--ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155
E+E + + L+ + + LLG+A GR SD+L Y+ AL++ P I
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRA--YMALGRASDALLAYRNALRLAGDNP-EIL 193
Query: 156 LGIGLCRYKL--GQLG-KARQAFQRALQLDPENVEALVALA 193
LG+ Y Q+ KAR ++AL LDP N+ AL LA
Sbjct: 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234
|
Length = 287 |
| >gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.001
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
+ +L +R L + P P R GL +LG A + L+L P+ +
Sbjct: 6 LREEDFERALAVVERLLLLAPDDPYERRDR-GLLYAQLGCFQAALADLEYFLELCPDAPD 64
Query: 188 ALVALAVM 195
A +
Sbjct: 65 AERIREQL 72
|
Length = 73 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFE 321
NL + GDY++A Y +++ E YY L LKLG D+ AL + E
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---YYNLALAYLKLGKDYEEALEDLE 62
Query: 322 KVLEIYP 328
K LE+ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 37/184 (20%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 758 QKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK--INTHVEYCKHLLDAAK 815
++ ++ AD + E + A + A+ +EK E K DAAK
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 816 IHREAAEREEQQNRQRQEAARQA---ALAEEARRKAEEQKKYLLEKRKLEDEQKRL---R 869
E ++ ++ ++ +E ++A A A++KA+E KK EK+K ++ +K+ +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 870 QQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 929
+ +E ++ +E ++ K E + D+ + E ++ K++ ++ ++ +
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Query: 930 YAEA 933
AEA
Sbjct: 1505 AAEA 1508
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 813 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 872
A ++ ++ AE +++ ++ AEEA+++AEE KK E +K E+E+K++ +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Query: 873 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 908
+ ++ E+ R A E E D+ +K+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
Length = 2084 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330
Y LG LKLGD+ AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 787 ASNLHLHGFDEKKINT-HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEAR 845
A LH + KK T K R AAERE NR+ ++ A AR
Sbjct: 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAERE--INREARQERAAAMARARAR 379
Query: 846 RKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSEND 898
R A + KK L +E + EE + ++T A RE S+ D
Sbjct: 380 RAAVKAKKKGL-IDASPNEDT-PSENEESKGSPPQV-EATTTAEPNREPSQED 429
|
Length = 429 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 818 REAAEREEQQNRQRQEAARQAA-----LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 872
+E E+EEQ +R+E R+AA EEARR+ EE+ + EK K + E++ ++QE
Sbjct: 44 QERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQE 103
Query: 873 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 916
E + K++ + A + ER + ++ ++ R K+R
Sbjct: 104 EQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 797 EKKINTHVEY-CKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 855
++IN E +++L+ A ++ AE+ +++ R+R E+ + L +A+ +AE +K+ +
Sbjct: 8 IQEINREAEQKIEYILEEA---QKEAEKIKEEARKRAESKAEWIL-RKAKTQAELEKQRI 63
Query: 856 LEKRKLEDEQKRLRQQEEHFQRVKEQWRS 884
+ KLE +KRL QEE V E R
Sbjct: 64 IANAKLEVRRKRLAVQEELISEVLEAVRE 92
|
Length = 198 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
YG G + AL + ++ PDN L+ G I ++ + ++A E L+KA +
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
Query: 361 DPRDAQAFIDLGELLI 376
DP ++L + L+
Sbjct: 370 DPNSPLLQLNLAQALL 385
|
Length = 484 |
| >gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-ALQV 146
+ + L+ + +A+ K L+A +N A L A G + LQ
Sbjct: 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198
Query: 147 HPSCPGAIRLGIGLCRYKLGQLGKAR--QAFQRALQLDPENVEALVALAVMDLQA--NEA 202
++ I L L Q Q QR L DP++VEA +ALA NEA
Sbjct: 199 QDKAAHGLQAQIEL----LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEA 254
Query: 203 A 203
A
Sbjct: 255 A 255
|
Length = 304 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 612 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 671
++A E Y + + N A + G+++ + + + + +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----LELDPDNAKA 70
Query: 672 WINLAHVYFAQGNFALAMKMYQNCLRKFY 700
+ NL Y+ G + A++ Y+ L
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 157 GIGLCRYKLGQLGKARQAFQRALQLDPEN 185
+G KLG+ +A + +++AL+L+P N
Sbjct: 6 NLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 486 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 545
A L ++ D A + L + D RL + + L I+ + LK +
Sbjct: 269 YAERLIRLGDHDEAQEIIEDALKRQWD--PRLCRLIPRLRPGDPEPL-IKAAEKWLKQHP 325
Query: 546 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 588
+ P LS LG L LKN W KA E AA YA L+
Sbjct: 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368
|
Length = 400 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.003
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKID 361
LG + L GD+ +A+ E+V E P+ E L L Y LG + E LR+A +
Sbjct: 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279
Query: 362 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 396
P A + L +LL + A A R L++
Sbjct: 280 PG-ADLLLALAQLLEEQEGPEA--AQALLREQLRR 311
|
Length = 389 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.004
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 119 ALLGQACVEFNRGRYSDSLEFYKRALQV-------HPSCPGAIRLGIGLCRYKLGQLGKA 171
AL A V G Y ++LE ++AL++ HP + LG +A
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPET-ARALNNLARLYLALGDYDEA 65
Query: 172 RQAFQRALQLDPE 184
+ ++AL L
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 18/241 (7%)
Query: 820 AAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRL----------- 868
A+ + ++ + +E ++ E+ ++K + +++ K K E ++KR
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Query: 869 ----RQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 924
R +EE +R + + S P +++ N E EK+R+ + K
Sbjct: 154 VEEPRDREEEKKRERVR-AKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 925 HYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 984
E E D RE R+ +++ A+
Sbjct: 213 VNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSK 272
Query: 985 DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDS--DGELRENDHKSNGGAALDD 1042
T+ R A S P + ++ LQD+ G++ N + +D
Sbjct: 273 RTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDED 332
Query: 1043 D 1043
D
Sbjct: 333 D 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 352
+EK LE+ P+N E L + + LGQ ++A +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1043 | |||
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.94 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.92 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.92 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.89 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.87 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.85 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.82 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.82 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.81 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.77 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.74 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.7 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.69 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.69 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.69 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.68 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.61 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.61 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.61 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.4 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.34 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.29 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.29 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.27 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.26 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.09 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.08 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 99.08 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.02 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.99 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.92 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.9 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.74 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.7 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.69 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.69 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.69 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.64 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.58 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.53 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.49 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.47 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.47 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.45 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.37 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.33 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.32 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.3 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.27 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.25 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.22 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.11 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.1 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.08 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.05 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.98 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.84 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.78 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.68 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.68 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.67 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.63 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.62 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.57 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.56 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.56 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.54 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.51 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.5 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.39 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.25 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.24 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.17 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.14 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.14 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.13 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.09 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.07 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.06 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.05 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.97 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.91 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.91 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.87 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.87 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.84 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.81 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.79 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.76 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.73 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.72 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.5 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.45 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.42 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.4 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.37 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.37 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.31 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.21 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.16 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.16 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.04 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.02 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.92 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.9 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.86 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.79 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.74 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.73 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.65 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.53 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.45 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.43 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.34 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 95.3 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.24 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.08 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.04 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.02 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.89 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.81 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.74 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.74 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.71 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.55 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 94.45 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.35 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.34 | |
| PF08492 | 59 | SRP72: SRP72 RNA-binding domain; InterPro: IPR0136 | 94.24 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 94.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.03 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.01 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.95 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.92 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.81 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.69 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.63 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.49 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.24 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.22 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.17 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.06 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 93.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.06 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.23 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.13 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 92.1 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.93 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 91.92 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.59 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 91.05 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.0 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 91.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.86 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.39 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 90.34 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.32 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.11 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 89.78 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 89.06 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 89.02 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 88.96 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.96 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.72 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 88.65 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.64 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 88.42 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 88.01 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 87.89 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.57 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 87.31 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 86.85 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 86.8 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 86.46 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.3 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.18 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 86.1 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 85.96 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 85.94 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 85.7 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.61 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 84.92 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.69 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 84.11 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.09 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 84.0 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 83.75 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 83.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 83.5 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 83.44 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 83.29 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 83.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 82.86 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 82.44 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 82.31 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.2 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.58 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.26 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.16 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 81.07 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.81 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.5 |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-105 Score=882.90 Aligned_cols=955 Identities=39% Similarity=0.636 Sum_probs=845.0
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
+|.+||+||++++|+.||+.++. +....|.++..+++.+++.|+.+|..+|.....+..+++.+..|+.+|+.+-+++.
T Consensus 47 ~AleYy~~gk~eefi~iLE~g~~-~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m 125 (1018)
T KOG2002|consen 47 IALEYYKQGKTEEFIKILESGLI-DANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDM 125 (1018)
T ss_pred HHHHHHhcccHHHHHHHHHhhhh-cccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhc
Confidence 58999999999999999999984 34556999999999999999999999999998888999999999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhH
Q 001618 81 HEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 158 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~l 158 (1043)
.....|+..+..++..|.. +.|...|..++..+|+|+.++++.|.+.+..|+|..|+.+|++++.++|...+.+++++
T Consensus 126 ~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi 205 (1018)
T KOG2002|consen 126 YEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI 205 (1018)
T ss_pred cCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh
Confidence 9999999999999888876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001618 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238 (1043)
Q Consensus 159 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 238 (1043)
|.|++++|+.+.|+..|+++++++|.++.++..||.+.+...+...+..++..+.+++..+|.+|.+++.|+..|+..|+
T Consensus 206 g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 206 GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001618 239 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318 (1043)
Q Consensus 239 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 318 (1043)
|..+..+...++......+..+++++++|++|+.+|+|++|..+|..++.. .+..+..+++++|++|+..|+++.|+.
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHH
Confidence 999999999999988777888899999999999999999999999999974 223358889999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001618 319 NFEKVLEIYPDNCETLKALGHIYVQLG----QIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 319 ~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 394 (1043)
+|+++++..|++.+++..||.+|...+ ..+.|..++.+++...|.+..+|+.++.++..++...++.+|..++.++
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 999999999999999999999999886 6789999999999999999999999999998888888899999999988
Q ss_pred HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCC
Q 001618 395 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 474 (1043)
Q Consensus 395 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1043)
...+..+++++++++|..++..|++..|..+|..++..+......+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de--------------------------------- 490 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE--------------------------------- 490 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc---------------------------------
Confidence 88877899999999999999999999999999999874210000000
Q ss_pred CCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
......+..|++|+++...+++..|...|..++..+|.++++|+++|.+....++..+|..+++.++..+..+|.+|..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 01234778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCC-CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 633 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 633 (1043)
|.+|+...+|..|.+.|..+++.... +|+|++++|||+ |+...+...++++.+++.+++|+++|.++|..+|.|.++.
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 99999999999999999988876543 599999999998 9999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
+++|+|++..|++.+|+.+|.++++... +++++|+|+||||+.+|+|..|+++|+.|+++|...+++.++.+||+
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATS-----DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHh-----hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 9999999999999999999999999885 68899999999999999999999999999999988888999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 001618 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLH 793 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~l~~a~~~l~~a~~~~~~l~~~~~~~~~ 793 (1043)
+|+..|++.+|..++.+|+++.|.++.+.||+|+++.+.+...+...++++++|..++.+++.|+++|.+|+...+.
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~--- 801 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK--- 801 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001618 794 GFDEKKINTHVEYCKHLLDAAKIHREAAER-EEQQNRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 869 (1043)
Q Consensus 794 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1043)
+++++.+.+++++|+++++++..|...+++ .|++.++|+ +.+++.++.++++|.++|++..+++.++++++.+...
T Consensus 802 r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~t 881 (1018)
T KOG2002|consen 802 RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERT 881 (1018)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999887764 445554555 4555566677788888777777777666676666666
Q ss_pred HHHHHHHHHHHhhhccCchh-hhhhccCCCCccccccccccccCCcccccccCcC-CcccchhhhhcccCCCCCCcchhc
Q 001618 870 QQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSR-SHYETEYAEADMMDYREEPEDEDA 947 (1043)
Q Consensus 870 ~~~~~~~~~~e~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1043)
+..+.+.+-+++|+++.... |||..+ ++..++||+||+|||+++++ .++..+++|.+.+++...+.....
T Consensus 882 k~~~~~~~~~e~~k~s~g~~~~~~~~~--------~~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~ 953 (1018)
T KOG2002|consen 882 KEILKLPEIEEEKKKSGGGGRKRGDDS--------DSDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAF 953 (1018)
T ss_pred HHHHhccchHhhhhhcCCCCCCCCCcC--------cccchhhccCccccccccccccCCcchhhhccChhhccchhhhhh
Confidence 66778888899997766544 333221 24445566666555533333 333455566777778778887777
Q ss_pred cCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCCC-CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001618 948 SMNYREPIGQM-NDQDDDVEENAND-RLAAAGLEDS-DVDDEMAPSITAARRRRALSESDDDEPF 1009 (1043)
Q Consensus 948 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1043)
++.+++++.+. ...+.+++++.++ ..+..++.++ |+|.|..+++. .||++++|.|||..++
T Consensus 954 ~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~~~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 954 ISTSERSDDDVVKKAESDSDDDSQDSREASEESDRPIESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred hcccccccccccCcccCCcccccccccchhhccCCccccccccCcccc-cccchhhccccccccc
Confidence 77765333222 2233444555665 7888898887 77777788888 9999999999987653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-51 Score=519.35 Aligned_cols=678 Identities=21% Similarity=0.249 Sum_probs=509.8
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
+|..|+.+|++++|+.+++.++...+ ....++..++.++...|... +|+..|++++..+|
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~-----------~A~~~~~~a~~~~p 224 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLGNIE-----------LALAAYRKAIALRP 224 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHhhCC
Confidence 36778888999999988888765432 22346667777777777555 66666666666666
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~ 160 (1043)
.++.+++.++.+++..|++++|...|+.++...|.++.+++..|.+++..|++++|+..|++++..+|.. ...++.+|.
T Consensus 225 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~ 303 (899)
T TIGR02917 225 NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY-LPALLLAGA 303 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666665 334555566
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHH
Q 001618 161 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240 (1043)
Q Consensus 161 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 240 (1043)
++..+|++++|...|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++..++.++...|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH
Confidence 66666666666666666666666665555555555555555 555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHH----------------------------------HHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE----------------------------------KAGLYYMAS 286 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~----------------------------------~A~~~~~~a 286 (1043)
+|..++..++... |....++..+|.++...|+++ +|+..+...
T Consensus 381 ~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 381 KAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555555554332 333344444444444444444 444444444
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001618 287 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366 (1043)
Q Consensus 287 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 366 (1043)
.. ..|.....+..+|.++...|++++|+.+|.+++..+|++..++..++.++...|++++|+..|++++...|.+..
T Consensus 458 ~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 534 (899)
T TIGR02917 458 EK---KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR 534 (899)
T ss_pred HH---hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 43 346667788888999999999999999999999989988889999999999999999999999999988898888
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccch
Q 001618 367 AFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 445 (1043)
Q Consensus 367 ~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 445 (1043)
++..++.++ ..|++++|+..+.+++...+. ....+..++.++...|++++|+.++++++...+... .
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~ 602 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP-------E 602 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-------H
Confidence 999999988 888999999988888776443 356777888888888888888888888876432100 0
Q ss_pred hhhhhhhhHHH----hhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHH
Q 001618 446 YVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 521 (1043)
Q Consensus 446 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 521 (1043)
........... ...+..+..+.. ..|.++.++..++.++...|++++|+.+|++++..+|++..++..++
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 676 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00000000000 123333443333 45677888999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhc
Q 001618 522 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601 (1043)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~ 601 (1043)
.++...|++++|..+++.+....|.++.++..+|.++...|++++|+..|.+++...|.+ ..+..++.+ +...
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~~~---- 749 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LLAS---- 749 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HHHC----
Confidence 999999999999999999999999999999999999999999999999999999887765 455667777 7777
Q ss_pred ccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHH
Q 001618 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 681 (1043)
Q Consensus 602 ~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~ 681 (1043)
|++++|+..+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| +++.++.++|+++..
T Consensus 750 --------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 750 --------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNLAWLYLE 816 (899)
T ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887 678899999999999
Q ss_pred ccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 682 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 682 ~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
.|+ .+|+.+|++++.. .+.++.++..+|.+++..|++++|..+|+++++.+|.++.++++++.++
T Consensus 817 ~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 817 LKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred cCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 999 8899999999988 4566888999999999999999999999999999999999999999987
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=512.97 Aligned_cols=680 Identities=22% Similarity=0.232 Sum_probs=534.9
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
+|..|+.+|++++|+..+..+.... .+....++..+|.+|...|+.. +|...|++++..+|
T Consensus 96 ~a~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~a~~~~~ 156 (899)
T TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLD--------DEGAAELLALRGLAYLGLGQLE-----------LAQKSYEQALAIDP 156 (899)
T ss_pred HHHHHHHCCCHHHHHHhhcccccCC--------chhhHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCC
Confidence 4788999999999999998764221 1244567888999999888666 89999999999999
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~ 160 (1043)
.++.+++.+|.+++..|++++|+..+++++..+|.+..+++.+|.+++..|++++|+..|++++..+|.+ ..+++.++.
T Consensus 157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~ 235 (899)
T TIGR02917 157 RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALAT 235 (899)
T ss_pred CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 667888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHH
Q 001618 161 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240 (1043)
Q Consensus 161 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 240 (1043)
++...|++++|...+.++++..|.+..+++..+.++...|+ +++|+..|.+++..+|.+..++..++.+++..|+++
T Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 236 ILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Confidence 99999999999999999999899888888888888888888 899999999999999888888888888999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 320 (1043)
.|..++..++... |....++..++.++...|++++|+..+..++. ..+.....+..+|.++...|++++|+.+|
T Consensus 313 ~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 386 (899)
T TIGR02917 313 QAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYL 386 (899)
T ss_pred HHHHHHHHHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999998888654 55567788888888888888888888888876 55666777888888888888888888888
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 321 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 321 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
++++...|++..++..+|.++...|++++|+..|.+++...|........++.++ ..|++++|+..+.......|.
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 463 (899)
T TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD--- 463 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Confidence 8888888888888888888888888888888888888888888888888888888 888888888888777654332
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCCCC
Q 001618 400 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVEL 475 (1043)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 475 (1043)
.+.++..+|.++...|++++|+.+|.+++...+... ............ ......+..+.. .
T Consensus 464 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~------~ 528 (899)
T TIGR02917 464 --NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF-------PAAANLARIDIQEGNPDDAIQRFEKVLT------I 528 (899)
T ss_pred --CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHH------h
Confidence 466778888888888888888888888876543110 000000000000 122333333332 4
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 555 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 555 (1043)
.|.+..++..++.++...|++++|+.++.+++..+|.+...+..++.++...|++++|+.++++++...|.++.++..++
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45667777777777777788888888888877777777777777777777788888888888887777777777778888
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~ 635 (1043)
.++...|++++|+..|++++...|. +..++..++.+ |... |++++|+..|.+++..+|++..++..
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8888888888888888877776654 45566667777 6666 77778888888877777777777777
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
++.++...|++++|+.+++.+....| ..+.++..+|.++...|++++|+..|++++...|.+ .++..++.++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~ 746 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHP-----KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRAL 746 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHH
Confidence 77777777777777777777777665 556677777777777777777777777777764322 5666777777
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
...|++.+|...+++++...|++..+++++|.+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7777777777777777777777777777777765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=410.25 Aligned_cols=582 Identities=17% Similarity=0.165 Sum_probs=509.3
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 65 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
++.|...|..+++..|.+..+++..|.+.+..|+|-.|+.+|..++..+|.. +...+++|.|+.++|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999875 567789999999999999999999999
Q ss_pred HHhCCCChhHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 220 (1043)
++++|.+ ..++..||.+-.... .+..+...+.++...+|.|+.++..|+..++-.++ +..+..+...++...-
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 677788887766654 47789999999999999999999999999999999 9999999999888664
Q ss_pred C---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh
Q 001618 221 Y---CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 297 (1043)
Q Consensus 221 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 297 (1043)
. -...++.+|.+|..+|+|++|..+|-.+++..+.+ ....++.+|..|...|+++.|..+|++++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 3 34569999999999999999999999999765432 367789999999999999999999999998 667888
Q ss_pred hhHHHHHHHHHHcC----CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 001618 298 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 368 (1043)
Q Consensus 298 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~ 368 (1043)
.....+|.+|...+ ..+.|..++.+++...|.+..+|..++.++....-+.. +.+|..++.+ .+--+..+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 88999999999886 67889999999999999999999999999887655544 8899888743 35568899
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccc
Q 001618 369 IDLGELL-ISSDTGAALDAFKTARTLLKK-A----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 442 (1043)
Q Consensus 369 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 442 (1043)
.++|.++ ..|++..|...|..+...... . +......+.++++.++-..+++..|...|..++.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 999999999999999887331 1 1123356789999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001618 443 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 522 (1043)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 522 (1043)
..|..+..+..+|.+....++..+|..+++.++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 467899999999988888899999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHHcC--CChHHHHHHHHHhhhc------------cchHHHHHHHHHhhhcCCCCChHHHHH
Q 001618 523 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 588 (1043)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~~ 588 (1043)
+++....+..|..-|...++.-. .++.+...||++++.. +.+..|+..|.+++...|. +.|+-..
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999887777665443 3566777888877653 4578999999999998887 7888888
Q ss_pred hhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCc
Q 001618 589 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 668 (1043)
Q Consensus 589 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 668 (1043)
+|.+ +-.. |++..|+.+|.++.+.-.++..+|.++|.||+.+|+|..|+..|+.++...-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 8888 6666 999999999999998888888999999999999999999999999999887422 67
Q ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q 001618 669 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 718 (1043)
Q Consensus 669 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~ 718 (1043)
+.++..||.+++..|.+.+|...+..++.. .+.++.+.+++|.+..+.
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 899999999999999999999999999998 456678888888887664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=442.27 Aligned_cols=623 Identities=17% Similarity=0.088 Sum_probs=505.3
Q ss_pred HHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001618 37 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 116 (1043)
Q Consensus 37 ~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 116 (1043)
....|...+.+|...++.. .|.+.+.+++.++|+++.++..++.+++..|++++|...+++++..+|++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~ 95 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS 95 (1157)
T ss_pred HHHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC
Confidence 3445666677777776555 99999999999999999999999999999999999999999999999999
Q ss_pred HHHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 117 VPAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 117 ~~a~----------------~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
+.++ +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 96 NAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred hHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Confidence 7763 667888999999999999999999998887433233333444456999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---
Q 001618 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--- 257 (1043)
Q Consensus 181 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--- 257 (1043)
.+|+++.++..+|.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 999999999999999999999 99999999999876554322211111111122222233333333222211111
Q ss_pred --------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 258 --------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 323 (1043)
Q Consensus 258 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 323 (1043)
........+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+.+|+++
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112233568899999999999999999998 66788899999999999999999999999999
Q ss_pred HHHCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHH
Q 001618 324 LEIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFK 388 (1043)
Q Consensus 324 l~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~ 388 (1043)
++.+|++.. ....+|.++...|++++|+..|++++..+|.+..++..+|.++ ..|++++|+..|+
T Consensus 330 l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999987642 2234578889999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc
Q 001618 389 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468 (1043)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1043)
+++...|. ...++..++.++. .+++++|+.++..+....+. .....
T Consensus 410 ~aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-----------------------~~~~~----- 455 (1157)
T PRK11447 410 QALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-----------------------SIDDI----- 455 (1157)
T ss_pred HHHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-----------------------HHHHH-----
Confidence 99988654 4677888888875 46789999888764331100 00000
Q ss_pred CCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCCh
Q 001618 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 548 (1043)
Q Consensus 469 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (1043)
........+..+|.++...|++++|+.+|++++..+|+++.+++.++.++...|++++|+..+++++..+|.++
T Consensus 456 ------~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 456 ------ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred ------HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 00112345778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChH---------HHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHH
Q 001618 549 NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 619 (1043)
Q Consensus 549 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 619 (1043)
.+++.++.++...+++++|+..++++.......... ..+.++.. +... |++++|+.++
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l 596 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALL 596 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHH
Confidence 999999999999999999999999875432221111 12234445 5555 9999999987
Q ss_pred HHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 620 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 620 ~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
+ .+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|...|++++|+..|+.++..
T Consensus 597 ~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 597 R----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred H----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 7 6899999999999999999999999999999999998 78999999999999999999999999999876
Q ss_pred cCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 700 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 700 ~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
.+.++.++..+|.++...|++++|..+|++++...|.++.
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 4566888999999999999999999999999999887664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=435.36 Aligned_cols=642 Identities=14% Similarity=0.119 Sum_probs=520.4
Q ss_pred hHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q 001618 2 QREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH 81 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~ 81 (1043)
++.+-.+++.+-|.+.|.+++..++ +...++..++.+++..|+.. +|...++++++.+|+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~l~~l~~~~P~ 94 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKLLDRLSQLAPD 94 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHHHHHHHhhCCC
Confidence 3455677999999999999876644 23557778888888888776 999999999999999
Q ss_pred ChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHH
Q 001618 82 EPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACVEFNRGRYSDSLEFYKRAL 144 (1043)
Q Consensus 82 ~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a-~~~la~~~~~~g~~~~Al~~~~~~l 144 (1043)
++.++ +.+|.++...|++++|+..|++++..+|.+... ......+....|++++|+..|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll 174 (1157)
T PRK11447 95 SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLN 174 (1157)
T ss_pred ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHH
Confidence 98764 667888999999999999999999999887642 2233333445699999999999999
Q ss_pred HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-----------------HHhHHH
Q 001618 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------------AAGIRK 207 (1043)
Q Consensus 145 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------------~~~~~~ 207 (1043)
..+|.+ ..+++.+|.+++..|++++|+..|++++...+....+...........+. ......
T Consensus 175 ~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 175 ADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred HhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 999999 67899999999999999999999999987655432221111000001111 011233
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 208 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
|...+.+.....++.......++..+...|++++|+..|++++... |.++.+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444333322222233456888999999999999999999754 7778999999999999999999999999999
Q ss_pred HhcCCCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 288 KEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 356 (1043)
Q Consensus 288 ~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (1043)
...+..+.. ......+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 854332221 112345588899999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 357 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
++..+|.+..++..++.++..+++++|+.++..+....+.. ........+..+|.++...|++++|+.+|++++.
T Consensus 411 aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~- 489 (1157)
T PRK11447 411 ALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA- 489 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 99999999999999999995567899998886543322110 0011234567789999999999999999999998
Q ss_pred hhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC
Q 001618 433 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 512 (1043)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 512 (1043)
..|.++.+++.+|.+|...|++++|+..|++++..+|+
T Consensus 490 ------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 490 ------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred ------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 56788999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCC----------hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCC
Q 001618 513 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 582 (1043)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 582 (1043)
++..++.++..+...+++++|+.+++++....... ......++..+...|++++|+.+++ ..|. +
T Consensus 528 ~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~-~ 602 (1157)
T PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPP-S 602 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCC-C
Confidence 99999999999999999999999998764322111 1123467888999999999999987 3344 5
Q ss_pred hHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC
Q 001618 583 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 662 (1043)
Q Consensus 583 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 662 (1043)
...++.+|.+ |... |++++|+..|++++..+|+++.++..++.++...|++++|+..|++++...|
T Consensus 603 ~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p- 668 (1157)
T PRK11447 603 TRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN- 668 (1157)
T ss_pred chHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence 5677889999 8888 9999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 001618 663 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIH 733 (1043)
Q Consensus 663 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~l~~la~~~~~~g~~~~A~~~~~ka~~ 733 (1043)
+++.++..+|.++...|++++|+..|++++...+..+ ++.++..+|.++...|++++|+..|++++.
T Consensus 669 ----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 ----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999999998864332 245777889999999999999999999986
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=378.28 Aligned_cols=454 Identities=20% Similarity=0.273 Sum_probs=431.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
.|+|.+|.+.++.+...||.+...+..++.++++..+++.....-..+++..|....++-.+|.++...|+++.|+.+|.
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
.++++.|+. .+.|+++|.|+...|+.+.|..+|..+++++|+...+...+|.++...|. ..+|..+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 78899999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHH
Q 001618 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301 (1043)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 301 (1043)
...+|..||.++..+|+...|++.|+++++. +|....+|++||.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 9999999999999999999999999999965 588889999999999999999999999999998 6788999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 380 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 380 (1043)
++|.+|+.+|..+-||.+|++++...|+.++++.++|.++...|+..+|..+|.+++.+.|+.+++..+||.++ .+|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhh
Q 001618 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 381 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
+.|..+|.+++..+|.. ...++++|.+|-++|++++|+.+|++++.
T Consensus 371 e~A~~ly~~al~v~p~~-----aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEF-----AAAHNNLASIYKQQGNLDDAIMCYKEALR----------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhh-----hhhhhhHHHHHHhcccHHHHHHHHHHHHh-----------------------------
Confidence 99999999999998773 78999999999999999999999999998
Q ss_pred hhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (1043)
+.|....++.++|.+|-.+|+...|+.+|.+++..+|.+++++.+||.+|...|+..+|+..|+.+
T Consensus 417 --------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 417 --------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred --------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 541 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
+++.|+.++++.++..++.-..+|..--+.+.+
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 999999999999999887766655543333333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=371.42 Aligned_cols=460 Identities=20% Similarity=0.254 Sum_probs=322.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
.....+.++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ..++-++|.+
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~aN~ 125 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLANI 125 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHHHH
Confidence 334456666666666777777777776666666666666666666666666666666666666666666 5556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+-..|++..|+..|+.++++.|++.++|..+|.++...|+ ...|..+|..+++++|...
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~------------------ 184 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLY------------------ 184 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchh------------------
Confidence 6666666666666666666666666666666666666666 6666666666666665433
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
.+...+|..+-..|+..+|...|.+++. ..|.+..+|.+||.++...|+...|+..|+
T Consensus 185 -------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~ 242 (966)
T KOG4626|consen 185 -------------------CARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYE 242 (966)
T ss_pred -------------------hhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHH
Confidence 3334455555555555555555555554 444555555555555555555555555555
Q ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 401 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 401 (1043)
++++++|+..++|++||.+|...+.++.|+..|.+++.+.|++
T Consensus 243 eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~------------------------------------- 285 (966)
T KOG4626|consen 243 EAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH------------------------------------- 285 (966)
T ss_pred HhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-------------------------------------
Confidence 5555555555555555555555555555555555555555544
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhH
Q 001618 402 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 481 (1043)
Q Consensus 402 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1043)
..++.++|++|+.+|..+.|+..|++++. ..|..+.
T Consensus 286 -A~a~gNla~iYyeqG~ldlAI~~Ykral~-------------------------------------------~~P~F~~ 321 (966)
T KOG4626|consen 286 -AVAHGNLACIYYEQGLLDLAIDTYKRALE-------------------------------------------LQPNFPD 321 (966)
T ss_pred -hhhccceEEEEeccccHHHHHHHHHHHHh-------------------------------------------cCCCchH
Confidence 44555566666666666666666666666 4566777
Q ss_pred HHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
++.++|..+-..|+..+|..+|.+++..+|+++++..+||.++..+|.+++|..+|.+++..+|....+..+++.+|-++
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 77777777777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHH
Q 001618 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~ 641 (1043)
|++++|+.+|+.++.+.|. -..++.++|+. |-.. |+...|++.|.+++..+|....+..+||.+|.
T Consensus 402 gnl~~Ai~~YkealrI~P~-fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPT-FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred ccHHHHHHHHHHHHhcCch-HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 8888888888888877665 55677778888 7777 88899999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCH
Q 001618 642 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 685 (1043)
Q Consensus 642 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~ 685 (1043)
..|++.+|+..|+.++.+.| +.++++.|+.+++.--..+
T Consensus 468 DsGni~~AI~sY~~aLklkP-----DfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKP-----DFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred ccCCcHHHHHHHHHHHccCC-----CCchhhhHHHHHHHHHhcc
Confidence 99999999999999999988 8899999999997665443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=366.19 Aligned_cols=614 Identities=11% Similarity=0.009 Sum_probs=432.4
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~ 146 (1043)
+|+..|+++++.+|+++.+++.++.+|+..|++++|+..+++++..+|.|...+..++.+ +++.+|+.+|++++..
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHh
Confidence 677777777777777777777777777777777777777777777777776666666554 6777777777777777
Q ss_pred CCCChhHHHHhHHHH--------HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001618 147 HPSCPGAIRLGIGLC--------RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218 (1043)
Q Consensus 147 ~p~~~~~~~~~lg~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 218 (1043)
+|.+ ..+++.++.. |.+.+....++. .+.+..+|......+.+..+|...++ +++++..+.++.+.
T Consensus 138 ~P~n-~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d---w~~Ai~lL~~L~k~ 211 (987)
T PRK09782 138 QKAC-DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ---WSQADTLYNEARQQ 211 (987)
T ss_pred CCCC-hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC---HHHHHHHHHHHHhc
Confidence 7777 5556666665 444433334443 22222223334445555777777766 77777777777777
Q ss_pred CCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCC-
Q 001618 219 YPYCAMALNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF- 296 (1043)
Q Consensus 219 ~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~- 296 (1043)
.|.+...+..|+.+|.. .++ +.+..++...+ ..++.++..++..|...|+.++|...+...-......|..
T Consensus 212 ~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l------k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 212 NTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI------FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred CCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc------ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 77777777777776666 355 55555543221 2455667777777777777777776666543322222222
Q ss_pred ----------------------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Q 001618 297 ----------------------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 348 (1043)
Q Consensus 297 ----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 348 (1043)
..+...++..+...+.+..+..+ +...|.++. ...........+.+.
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchh
Confidence 22333445556666666644422 445565553 222222233447777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC---HHHHHH
Q 001618 349 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQ 424 (1043)
Q Consensus 349 ~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~ 424 (1043)
++...+.......|.+...+..++.+. ..|+..+|...|+.+... +. ....+..+...++.+|...+. ...+..
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QG-DARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cc-ccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 888888887777788888888888888 888888888888877764 21 112245566678888887776 333333
Q ss_pred HHHHHHc--chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCc--hhHHHHhHHHHHHhcCChHHHH
Q 001618 425 SFKDALG--DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAAS 500 (1043)
Q Consensus 425 ~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~ 500 (1043)
+...+-. .+.|..-+.+. ......+.. .+...|. .+.+++++|.++.. +++.+|+
T Consensus 438 l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~------al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGI--------------ADNCPAIVR------LLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred hccccccchhHHHHhhhhhh--------------hhhHHHHHH------hcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 3111100 00000000000 000111111 1124466 88999999999998 8999999
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCC
Q 001618 501 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 580 (1043)
Q Consensus 501 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 580 (1043)
..|.+++...|+.. ..+.++.++...|++++|+..|++++...|. ...+..+|.++...|++.+|..+|.+++...|.
T Consensus 497 ~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~ 574 (987)
T PRK09782 497 YAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG 574 (987)
T ss_pred HHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc
Confidence 99999999999854 4666777788999999999999998777555 456789999999999999999999999998765
Q ss_pred CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHh
Q 001618 581 KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660 (1043)
Q Consensus 581 ~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 660 (1043)
. ......++.. .... |++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++...
T Consensus 575 ~-~~l~~~La~~-l~~~------------Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 575 D-NALYWWLHAQ-RYIP------------GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred c-HHHHHHHHHH-HHhC------------CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 3333333333 3334 8999999999999999996 8899999999999999999999999999999
Q ss_pred cCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 661 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 661 p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
| +++.++.++|.++...|++++|+..|++++.. .|.++.+++.+|.++...|++++|...|++++.+.|++..
T Consensus 640 P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 640 P-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 8 78999999999999999999999999999998 5677999999999999999999999999999999999999
Q ss_pred hhhHHHHHH
Q 001618 741 LRFDAGVAM 749 (1043)
Q Consensus 741 ~~~nla~~~ 749 (1043)
+.+..|.+.
T Consensus 713 i~~~~g~~~ 721 (987)
T PRK09782 713 ITPLTPEQN 721 (987)
T ss_pred hhhhhhHHH
Confidence 999888875
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=350.47 Aligned_cols=592 Identities=12% Similarity=0.004 Sum_probs=448.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
...++..|..+...|++++|+..|++++..+|+++.+++.++.+|+..|++++|+..+++++..+|.+ ...+..++.+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n-~~~~~~La~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD-ARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-HHHHHHHHHh-
Confidence 34677889999999999999999999999999999999999999999999999999999999999988 4445545444
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--------HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--------DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 234 (1043)
+++++|+..|++++..+|++..++..++.+ |...+. ..+++. .+.+..+|....+...+..+|.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eq---Al~AL~--lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPV---ARAQLN--DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHH---HHHHHH--HhhhCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999998 555444 555555 4444444455566666799999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 001618 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 313 (1043)
Q Consensus 235 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~ 313 (1043)
..|+++.|+.++.++++.. +........++.+|.. +++ +.+..++...+ .....++..++..|...|+.
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~---pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l------k~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQN---TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI------FTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHhCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc------ccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999764 6667888899999988 477 88888866422 25677889999999999999
Q ss_pred HHHHHHHHHHHHH---CCCcHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHHhC
Q 001618 314 RSALTNFEKVLEI---YPDNCETLKALGH-----------------------------IYVQLGQIEKAQELLRKAAKID 361 (1043)
Q Consensus 314 ~~A~~~~~~~l~~---~p~~~~~~~~la~-----------------------------~~~~~g~~~~A~~~~~~~l~~~ 361 (1043)
++|...+...-.. .|.+...++.++. .+...+.+.-+. +++...
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 339 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ----KLLATL 339 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH----HHhcCC
Confidence 9999988875443 3444444444443 333344444332 223445
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhccc
Q 001618 362 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441 (1043)
Q Consensus 362 p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (1043)
|.++.....++.....+...++........... +.....+..++......|++.+|..+|+.+..... ...+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-----~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-- 411 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQE-----PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQG-DARL-- 411 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCc-cccc--
Confidence 666542222222224466666666655544432 23578899999999999999999999999987311 0000
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHH------HHHHhcCChHH---HHHHHHHHHHhCcC
Q 001618 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA------RLLEQIHDTVA---ASVLYRLILFKYQD 512 (1043)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la------~~~~~~g~~~~---A~~~~~~~l~~~p~ 512 (1043)
.. .+...-..++..- ..+..+.-...++ .-..-.|+..+ +...+..++...|.
T Consensus 412 ---~~-------~l~~~l~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~ 473 (987)
T PRK09782 412 ---SQ-------TLMARLASLLESH--------PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSP 473 (987)
T ss_pred ---CH-------HHHHHHHHHHHhC--------CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCC
Confidence 00 0000000000000 0000000000010 00112344433 44555556666677
Q ss_pred --cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhh
Q 001618 513 --YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 590 (1043)
Q Consensus 513 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg 590 (1043)
++.+|..+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..|++++...+. ...++.+|
T Consensus 474 ~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la 549 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS--NEDLLAAA 549 (987)
T ss_pred CCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--cHHHHHHH
Confidence 89999999999987 899999999999999999865 3666677778999999999999998776443 34466778
Q ss_pred hHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchh
Q 001618 591 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 670 (1043)
Q Consensus 591 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 670 (1043)
.+ +... |++..|+.+|.+++..+|.+......++..+...|++++|+..|++++...| + +.
T Consensus 550 ~a-ll~~------------Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-----~-~~ 610 (987)
T PRK09782 550 NT-AQAA------------GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-----S-AN 610 (987)
T ss_pred HH-HHHC------------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----C-HH
Confidence 77 7777 9999999999999999999887777777777788999999999999999997 4 78
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
+++++|.++..+|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|++++.++|+++.+++++|.++
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999 6777899999999999999999999999999999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=348.25 Aligned_cols=698 Identities=14% Similarity=0.073 Sum_probs=558.7
Q ss_pred HHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCC-
Q 001618 3 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH- 81 (1043)
Q Consensus 3 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~- 81 (1043)
..|++.|++++|..+|..+....+.+ + ...+..+...+...+. +..|..++..+++..+.
T Consensus 59 ~~l~~~g~~~~A~~l~~~m~~~g~~~-------~-~~~~~~ll~~~~~~~~-----------~~~a~~~~~~~~~~~~~~ 119 (857)
T PLN03077 59 RALCSHGQLEQALKLLESMQELRVPV-------D-EDAYVALFRLCEWKRA-----------VEEGSRVCSRALSSHPSL 119 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCC-------C-hhHHHHHHHHHhhCCC-----------HHHHHHHHHHHHHcCCCC
Confidence 57899999999999999875532211 1 1123334444444443 34788889888877654
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHhHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIG 159 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~--p~~~~~~~~~lg 159 (1043)
+......+...|.+.|+++.|...|+.+. +.+..+|..+...+.+.|++++|+.+|.++.... |+. .++..+.
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~--~t~~~ll 194 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV--YTFPCVL 194 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHH
Confidence 34455667778889999999999999875 3467889999999999999999999999998754 554 5566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 238 (1043)
..+...+++..+.+.+..++.... .+...+..|...|.+.|+ ++.|..+|..+. ..+...|+.+...|...|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWNAMISGYFENGE 268 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhHHHHHHHHhCCC
Confidence 777888999999999988887543 356678888899999998 999999998754 3466789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001618 239 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318 (1043)
Q Consensus 239 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 318 (1043)
+.+|+.+|..+.... ...+..++..+..++...|+.+.|.+++..+... .......++..+...|.+.|++++|..
T Consensus 269 ~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 269 CLEGLELFFTMRELS--VDPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred HHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999998653 2335577888889999999999999999998864 223446778999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001618 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 395 (1043)
Q Consensus 319 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 395 (1043)
+|+.+.. .+...|..+...|.+.|++++|+.+|.++.... |+.. .+..+...+ ..|+++.|..++..+.+.
T Consensus 345 vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~-- 418 (857)
T PLN03077 345 VFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGVKLHELAERK-- 418 (857)
T ss_pred HHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHHHHHHHHHHh--
Confidence 9998743 457789999999999999999999999987643 6554 444444556 999999999998877654
Q ss_pred hcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCC
Q 001618 396 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 475 (1043)
Q Consensus 396 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1043)
+...+..+++.+...|.+.|++++|...|++...
T Consensus 419 --g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------------------- 452 (857)
T PLN03077 419 --GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-------------------------------------------- 452 (857)
T ss_pred --CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------------------------------------------
Confidence 4445678899999999999999999999987543
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CCChHHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSML 554 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 554 (1043)
.+...|..+...|...|+..+|+.+|++++...+.+..++..+...+...|..+.+..++..++... ..+..+...+
T Consensus 453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 2456788899999999999999999999987655567788888888999999999999999988865 3445677788
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc-cHHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAA 633 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~ 633 (1043)
..+|.+.|++++|...|... .++..+|..+... |... |+.++|+.+|+++...... |..++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCCcccH
Confidence 99999999999999999876 3478889899988 8888 9999999999999986533 66678
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
..+...+.+.|.+++|..+|+.+.+..+- ..+..+|..+..+|.+.|++++|.++++.+ +..+++.+|..|..
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi---~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~aLl~ 665 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSI---TPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHHHHHH
Confidence 88888999999999999999999965531 135689999999999999999999997765 45778999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 001618 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLH 793 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~l~~a~~~l~~a~~~~~~l~~~~~~~~~ 793 (1043)
+|...|+.+.+....++++++.|++...+..++.+| ...+++. .+..++..+.+...-.....+|...... .|
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y-----a~~g~~~-~a~~vr~~M~~~g~~k~~g~s~ie~~~~-~~ 738 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY-----ADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGK-VH 738 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH-----HHCCChH-HHHHHHHHHHHcCCCCCCCccEEEECCE-EE
Confidence 999999999999999999999999999999999988 2233333 3446666666666666677777776554 34
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001618 794 GFDE-KKINTHVEYCKHLLDAAKIHREA 820 (1043)
Q Consensus 794 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 820 (1043)
.|.. ++.|+....+..+|..+..++.+
T Consensus 739 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 739 AFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred EEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 4444 36777778888877777666543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=318.69 Aligned_cols=436 Identities=15% Similarity=0.132 Sum_probs=350.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 163 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~ 163 (1043)
..+..+|..++..|+|++|+..|++++...|+ +..+..+|.++...|++++|+..+.+++.++|++ ..+++.+|.++.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 34667899999999999999999999999995 7789999999999999999999999999999999 678999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHH
Q 001618 164 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 243 (1043)
Q Consensus 164 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 243 (1043)
.+|++++|+..|..++.+++.+......+..... ...+...+..++...|.+...+..++.++... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998888776654432222111111 22345556667777887766666666644221 111111
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001618 244 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320 (1043)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 320 (1043)
..+.... ...+.....+..++..+ ...+.|++|+..|.+++......+....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1112111 12233334445555443 33578999999999999643335677788999999999999999999999
Q ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 321 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 321 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
++++..+|.+..++..+|.++...|++++|+.+|++++..+|+++.+++.+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999988654
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCch
Q 001618 400 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479 (1043)
Q Consensus 400 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1043)
....+.++|.++...|++++|+..|.+++. ..|..
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 477888999999999999999999999987 45778
Q ss_pred hHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHH------HHHHHH-HHHHcCChhHHHHHHHHHHHHcCCChHHHH
Q 001618 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAA-IAKARNNLQLSIELVNEALKVNGKYPNALS 552 (1043)
Q Consensus 480 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (1043)
+.++..+|.++...|++++|+..|++++.+.|..... +...+. ++...|++++|+.++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999998864322 222222 333469999999999999999999999999
Q ss_pred HHHHHhhhccchHHHHHHHHHhhhcCCC
Q 001618 553 MLGDLELKNDDWVKAKETFRAASDATDG 580 (1043)
Q Consensus 553 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 580 (1043)
.+|.++...|++++|+..|++++.+...
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=317.59 Aligned_cols=444 Identities=17% Similarity=0.130 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001618 40 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119 (1043)
Q Consensus 40 ~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 119 (1043)
.+..+|..|+..| +|.+|+..|++++...|+ +..++.+|.+|+..|++++|+..|.+++..+|++..+
T Consensus 129 ~~k~~G~~~~~~~-----------~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a 196 (615)
T TIGR00990 129 KLKEKGNKAYRNK-----------DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196 (615)
T ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3445555555555 555999999999999995 7789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
++.+|.++...|+|++|+..|..++..++.........+...+ ...+...+..++...|.+...+..++.++...
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 9999999999999999999998887776655222111111111 13455667777788888777777777654322
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCH
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 276 (1043)
. .......+......+|.....+..++..+. ..+.|++|+.+|+.++......|....++..+|.++...|++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 272 R----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred c----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 1 222233344555566666555566554433 357899999999999987655677888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 277 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 356 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (1043)
++|+..|.+++. ..|....+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 348 ~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 348 LEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999997 67888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhh
Q 001618 357 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 435 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 435 (1043)
++.++|++..+++.+|.++ ..|++++|+..|.+++...|. .+.+++.+|.++...|++++|+..|.+++.+.+.
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999 999999999999999987654 4789999999999999999999999999985321
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHH-HHHHhcCChHHHHHHHHHHHHhCcCcH
Q 001618 436 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA-RLLEQIHDTVAASVLYRLILFKYQDYV 514 (1043)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~~~ 514 (1043)
... ... ....+...+ .++...|++++|+.+|++++.++|++.
T Consensus 500 ~~~------------------------------------~~~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 500 TKP------------------------------------MYM-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred ccc------------------------------------ccc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 000 001 112223333 344457999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChH
Q 001618 515 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 549 (1043)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (1043)
.++..+|.++...|++++|+.+|++++.+.+....
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999887555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-28 Score=274.30 Aligned_cols=648 Identities=15% Similarity=0.120 Sum_probs=453.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 142 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 142 (1043)
|++++|+.++.++++++|.++.+|+.+|.+|-++|+.++|...+-.+-.++|++...|..++.....+|++..|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHH-HHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 143 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEA-LVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 143 ~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a-~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
+++.+|.+ ....+..+.+|.++|+...|...|.+++...|.. ... -...+..+...++ -+.|+..+..++.
T Consensus 233 AI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s 308 (895)
T KOG2076|consen 233 AIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALS 308 (895)
T ss_pred HHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHh
Confidence 99999999 6667889999999999999999999999999921 111 2233455555555 5888888888887
Q ss_pred h--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------h---cCCCCCchHH-HHHHHHH
Q 001618 218 I--YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------V---TNHGPTKSHS-YYNLARS 269 (1043)
Q Consensus 218 ~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------~---~~~~~~~~~~-~~~la~~ 269 (1043)
. +-.....++.++.++.....++.+......... . ++..+.+..+ ...++.+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 3 333456778899999999999998888776654 1 1111112222 5555666
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHH
Q 001618 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIE 348 (1043)
Q Consensus 270 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~ 348 (1043)
....+...+++..+..--. -...+.+..++.++.++...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++
T Consensus 389 ~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred cccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 6666666666665543321 124556677999999999999999999999999886553 5679999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH----HhcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001618 349 KAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 349 ~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
.|+..|.+++...|++.++.+.|+.++ .+|++++|++.+.....-. +.........+......+++..|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999 9999999998887654211 11111223567788889999999998855
Q ss_pred HHHHHHHcchhhhhhcccccchhh-hhhh-----------hhHHH-----hhhhhhhhhhccC--CCCCCCCCchh----
Q 001618 424 QSFKDALGDGIWLTLLDSKTKTYV-IDAS-----------ASMLQ-----FKDMQLFHRFEND--GNHVELPWNKV---- 480 (1043)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~---- 480 (1043)
..-...+.........-+..+... .... ..... ......-..+.+. ...........
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 555544443221111100000000 0000 00000 0000000000000 00001111222
Q ss_pred HHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC--cH----HHHHHHHHHHHHcCChhHHHHHHHHHHHH-----cCCChH
Q 001618 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQD--YV----DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPN 549 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 549 (1043)
.....+..++.+.+++.+|..+...++....- +. ...+....+.+..+++..|..+++.++.. +|..+.
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 23345566788889999999888887763321 11 22233334566778899999999888887 555555
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCccc
Q 001618 550 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 629 (1043)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 629 (1043)
+|...-.+....++-.--...+..++...+..++...+..|.. .+.. +.+.-|+..|.++...+|++
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCC
Confidence 6654334444445444444455555555555445444445655 5555 78899999999999999998
Q ss_pred HHHHHHhHHHHHhcC----------CchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 630 LYAANGAGVVLAEKG----------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 630 ~~a~~~la~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
|..-..+|..+.+.. ..-+++.++.+..+.-... +...+.+|+|.+|...|-..-|+.+|+++|...
T Consensus 774 Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 774 PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 887777777666531 3456666776666554311 356788899999999999889999999988874
Q ss_pred cCC--------CC--HHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 001618 700 YYN--------TD--AQILLYLARTHYEAEQWQDCKKSLLRAI 732 (1043)
Q Consensus 700 ~~~--------~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~ 732 (1043)
|.+ -+ -.+.++|..+|..+|+...|.+++++-+
T Consensus 851 p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 851 PKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred ccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 321 11 5677888888888888888888877643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-27 Score=252.67 Aligned_cols=597 Identities=16% Similarity=0.131 Sum_probs=447.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
-++..+|..++....+.+|.+|..|+.-|.+--..|++..|..+..+-.+..|.+...|+.-++ ....+.|..+..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999988888876543 344555666666
Q ss_pred HHHHhCCCChhHHHHhHHH---------------------------HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 142 RALQVHPSCPGAIRLGIGL---------------------------CRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
.++...|.+ ..+|+..+. ....+.+.+.|+-.+.++++.-|.+.+.|+.|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 666666666 333333222 2234455566777777777777777777777665
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHH
Q 001618 195 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 272 (1043)
Q Consensus 195 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~~~~la~~~~~ 272 (1043)
+. .|..|..+++++-+.-|.++.+|..-+.+--..|+.+.+.++..+.+..... ...+-+.|+.-+..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 42 2777778888888888888888888888888888888888888777754322 23445667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 273 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 352 (1043)
Q Consensus 273 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 352 (1043)
.|..-.+..+....+...-...+.-..|+.-++.+.+.+.++-|..+|..+++.+|....+|...+.+--..|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 77777777776666654334455566788888888888888888888888888888888888888888778888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 353 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 353 ~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+|++++...|.....|...+..+ ..|+...|..++..+....|. +.+++.....+.+...+++.|..+|.++..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 88888888888888888888877 778888888888887776554 467777777788888888888888888765
Q ss_pred chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCc
Q 001618 432 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 511 (1043)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 511 (1043)
.. ....+|+.-+.+...+++.++|+.+++.+++.+|
T Consensus 647 ~s--------------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 IS--------------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cC--------------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 32 2556777777777778888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhh
Q 001618 512 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 591 (1043)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~ 591 (1043)
++...|+.+|+++..+++.+.|...|...+...|.++.+|..++.+-.+.|....|..+|.++.-.+|. +...|+....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888777776 3333433332
Q ss_pred HHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhH
Q 001618 592 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 671 (1043)
Q Consensus 592 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 671 (1043)
+ =+.. |+.+.|..+..++|+..|++...|..-..+.-+-++-..++..+.+. . .++.|
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchh
Confidence 2 2222 88888888888888888888777766666666666655555554443 2 46778
Q ss_pred HHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhH
Q 001618 672 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744 (1043)
Q Consensus 672 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~n 744 (1043)
++..|..+....+++.|.++|.++++..++. ..+|..+-..+...|.-++-.++|.+.....|.+...|-.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~--GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDN--GDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--chHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 8888888888888888888888888884443 4455555566777787777788888888888877665443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-28 Score=304.85 Aligned_cols=618 Identities=14% Similarity=0.049 Sum_probs=511.7
Q ss_pred HHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q 001618 3 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 82 (1043)
Q Consensus 3 ~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 82 (1043)
.++..++.+..+..++..++..... ..+.+.+.|...|...|... .|..+|+++.. .+
T Consensus 94 ~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~n~li~~~~~~g~~~-----------~A~~~f~~m~~---~d 151 (857)
T PLN03077 94 RLCEWKRAVEEGSRVCSRALSSHPS--------LGVRLGNAMLSMFVRFGELV-----------HAWYVFGKMPE---RD 151 (857)
T ss_pred HHHhhCCCHHHHHHHHHHHHHcCCC--------CCchHHHHHHHHHHhCCChH-----------HHHHHHhcCCC---CC
Confidence 3456778888888888876543321 11236678888899888776 89999998753 46
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
..+|..+...|...|++++|+.+|.++.... ..+...+..+...+...+++..+..++..+++........++..+..+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~ 231 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence 7899999999999999999999999998643 235666777777788889999999999999887654445678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHF 240 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 240 (1043)
|.+.|+++.|...|.++.. .+...|..+...|.+.|+ +.+|+.+|.++.... ..+..++..+...+...|+.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 9999999999999998743 356778999999999999 999999999998754 335667888888999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 320 (1043)
.+.+++..+.... ...+..++..+...|.+.|++++|..+|..+.. + ....|..+...|.+.|++++|+.+|
T Consensus 306 ~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~-d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 306 LGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----K-DAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-CeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998753 234678899999999999999999999998642 2 3467999999999999999999999
Q ss_pred HHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001618 321 EKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 396 (1043)
Q Consensus 321 ~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 396 (1043)
..+.... |+ ...+..+...+...|+++.|..++..+.+.. ..+..++..|...| ..|++++|...|.++..
T Consensus 378 ~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 452 (857)
T PLN03077 378 ALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---- 452 (857)
T ss_pred HHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----
Confidence 9987653 54 4556666678899999999999999998875 34577888899999 99999999999886532
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCC
Q 001618 397 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 476 (1043)
Q Consensus 397 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1043)
.+..+|+.+...|...|++.+|+.+|.+++.. ..
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------------------------------~~ 486 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------------------------------LK 486 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC------------------------------------------CC
Confidence 23567889999999999999999999998752 23
Q ss_pred CchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHH
Q 001618 477 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 555 (1043)
Q Consensus 477 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 555 (1043)
| +...+..+...+...|..+.+..++..++.... .+...+..+...|.+.|++++|...|+.+ +.+...|..+.
T Consensus 487 p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI 561 (857)
T PLN03077 487 P-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILL 561 (857)
T ss_pred C-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHH
Confidence 3 445566666778899999999999999887542 34556678889999999999999999886 66788999999
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCc--ccHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT--SNLYAA 633 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~ 633 (1043)
..|...|+.++|+..|+++......++..++..+... |... |.+++|..+|+.+....+ .+...+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------GMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------ChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999999987777788777777777 7777 999999999999985432 366889
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
..+..+|.+.|++++|..+++++- .. .++.+|..|-..+...|+.+.|....+++++. .|.++..+..|+.
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n 699 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCN 699 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHH
Confidence 999999999999999999999872 22 35788999988888899999999999999988 5667889999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHh
Q 001618 714 THYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
+|...|++++|.++.+.....
T Consensus 700 ~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 700 LYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHCCChHHHHHHHHHHHHc
Confidence 999999999999998877554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-26 Score=255.72 Aligned_cols=626 Identities=18% Similarity=0.194 Sum_probs=449.1
Q ss_pred hHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q 001618 2 QREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMH 81 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~ 81 (1043)
|...|.+|++++|..|+..++..++. ....+..||.+|-.+|+.. ++...+-.|...+|+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~llAAHL~p~ 205 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLLAAHLNPK 205 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHHHHhcCCC
Confidence 67788899999999999998765432 2346788999999999777 899999999999999
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHh
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLG 157 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~----~~~~~~~ 157 (1043)
+...|..++.....+|++.+|+-+|.++++.+|.+....+..+.+|.+.|++..|+..|.+++...|.. ....-..
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999933 1223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH------------------
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE------------------ 217 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~------------------ 217 (1043)
.+..+...++-+.|+..++.++.... ...+.+..++.+++.... ++.++........
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 67788888888999999999998322 244556778888888777 7777776665544
Q ss_pred ----hC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 218 ----IY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 218 ----~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
+. +.+..+ ..+..++......+....+.................++.++.+|...|.|..|+.+|..++
T Consensus 363 ~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred cccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 11 111122 2344444444444444444444443332345667899999999999999999999999998
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 001618 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---- 363 (1043)
Q Consensus 288 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---- 363 (1043)
... ...+..+|+.+|.||...|.++.|+.+|++++...|++.++...|+.++.++|+.++|++.+.....-++.
T Consensus 442 ~~~--~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 442 NRE--GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred cCc--cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 632 23346689999999999999999999999999999999999999999999999999999999987633322
Q ss_pred -----CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc----------------C--CC-------------------
Q 001618 364 -----DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA----------------G--EE------------------- 400 (1043)
Q Consensus 364 -----~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~----------------~--~~------------------- 400 (1043)
...+......++ ..|+.++-+.....++..+... + ..
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 234445556666 7777766444333322211000 0 00
Q ss_pred --------------------Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH
Q 001618 401 --------------------VP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456 (1043)
Q Consensus 401 --------------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1043)
.. .+++..+..++...+.+++|..+...++....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~---------------------- 657 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI---------------------- 657 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh----------------------
Confidence 00 12222333444555555555555555443210
Q ss_pred hhhhhhhhhhccCCCCCCCCCchh-HHHHhHHHHHHhcCChHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHcCCh
Q 001618 457 FKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLRLAAIAKARNNL 530 (1043)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~ 530 (1043)
....+... .+-+....+-...+++..|..+++.++.. +|.....|...-.+....++-
T Consensus 658 ----------------f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 658 ----------------FFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred ----------------hhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00111212 33344445566779999999999999887 555555555333344444544
Q ss_pred hHHHHHHHHHHHHcCCC-hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHh
Q 001618 531 QLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 609 (1043)
Q Consensus 531 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~ 609 (1043)
.--...+..++...|.+ +......|..++..+.|..|+..|-++....|. ++...+.+|.. |...+.. +....+-
T Consensus 722 v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lgla-fih~a~q--r~v~~Rh 797 (895)
T KOG2076|consen 722 VCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLA-FIHLALQ--RRVSNRH 797 (895)
T ss_pred HHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHH-HHHHHHH--HHHhhhH
Confidence 44455566666777777 667778888999999999999999999998887 44444556666 5554221 1111112
Q ss_pred hhHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCC-------CCchhHHHhHHHHHH
Q 001618 610 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-------VQMPDVWINLAHVYF 680 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~~lg~~~~ 680 (1043)
-..-+++.++.+..++.-. .-.+.+++|.+|-..|-..-|+.+|++++...|.+.. .-.-.+-+||..||.
T Consensus 798 ~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~ 877 (895)
T KOG2076|consen 798 AQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYK 877 (895)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhc
Confidence 3455677777766665544 7789999999999999999999999999998764311 113457899999999
Q ss_pred HccCHHHHHHHHHHH
Q 001618 681 AQGNFALAMKMYQNC 695 (1043)
Q Consensus 681 ~~g~~~~A~~~~~~a 695 (1043)
..|+...|..++.+-
T Consensus 878 ~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 878 KSGNMQLARQILEKY 892 (895)
T ss_pred cCCcHHHHHHHHHhh
Confidence 999999999987654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-25 Score=237.44 Aligned_cols=564 Identities=14% Similarity=0.120 Sum_probs=465.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHH
Q 001618 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 176 (1043)
Q Consensus 97 g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 176 (1043)
++..+|..+++.+.+.+|.++.+|+.-|++--..|++..|..++.+..+..|.+ .++|+.-. ++...+.|..+.-
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-eDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-EDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-HHHHHHHH----hcCChHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999998 77777543 4556667777777
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhh------------------------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001618 177 RALQLDPENVEALVALAVMDLQANE------------------------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232 (1043)
Q Consensus 177 ~al~~~p~~~~a~~~la~~~~~~~~------------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 232 (1043)
.++...|.++..|+.-+.+.....+ ....+.|..++.++++..|.+...|..++.+
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarL 419 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARL 419 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8888888777777665554433221 1114456677777777778777777766544
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHc
Q 001618 233 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKL 310 (1043)
Q Consensus 233 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~la~~~~~~ 310 (1043)
.-|+.|.++++++.+.. |.+..+|..-+.+-...|+.+.-..++.+++..+.. ..-+...|+.-|..+-..
T Consensus 420 ----etYenAkkvLNkaRe~i---ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 420 ----ETYENAKKVLNKAREII---PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred ----HHHHHHHHHHHHHHhhC---CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 45777888888887655 666688888888888888888888888888765532 233445577777777777
Q ss_pred CCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHH
Q 001618 311 GDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 386 (1043)
Q Consensus 311 g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 386 (1043)
|..--+..+...++.+. .+....|..-+..+.+.+-++-|+.+|..+++..|....+|...+.+- ..|..+.-..+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 77766666666666553 234578888999999999999999999999999999999999998888 88889988899
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001618 387 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 466 (1043)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1043)
+++++...|+ ...+|...+..++..|+...|..++..+.+
T Consensus 573 lqkav~~~pk-----ae~lwlM~ake~w~agdv~~ar~il~~af~----------------------------------- 612 (913)
T KOG0495|consen 573 LQKAVEQCPK-----AEILWLMYAKEKWKAGDVPAARVILDQAFE----------------------------------- 612 (913)
T ss_pred HHHHHHhCCc-----chhHHHHHHHHHHhcCCcHHHHHHHHHHHH-----------------------------------
Confidence 9999988776 356677778889999999999999999987
Q ss_pred ccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCC
Q 001618 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 546 (1043)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (1043)
..|++..+|+.-..+......++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++.+++.+|.
T Consensus 613 --------~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 613 --------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred --------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 56788899999999999999999999999999998776 678888889999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccC
Q 001618 547 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 626 (1043)
Q Consensus 547 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 626 (1043)
...+|.++|+++..+++.+.|...|...+...|. .+..|+.|+.+ =-.. |...+|..+++++.-.+
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakl-eEk~------------~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKL-EEKD------------GQLVRARSILDRARLKN 749 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHH-HHHh------------cchhhHHHHHHHHHhcC
Confidence 9999999999999999999999999999998887 66667777666 3333 88999999999999999
Q ss_pred cccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHH
Q 001618 627 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 706 (1043)
Q Consensus 627 P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 706 (1043)
|.+...|.....+-.+.|+.+.|...+.++++..| .+...|..-.+..-.-++-..++.. ++++ ..|+.
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-----~sg~LWaEaI~le~~~~rkTks~DA----Lkkc--e~dph 818 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECP-----SSGLLWAEAIWLEPRPQRKTKSIDA----LKKC--EHDPH 818 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccchhHHHHHHhccCcccchHHHHH----HHhc--cCCch
Confidence 99999999999999999999999999999999998 4455666666666666666666666 5552 55689
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 746 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla 746 (1043)
++...|+.++...+++.|.++|.++++.+|++..++-.+-
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 9999999999999999999999999999999887765543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-27 Score=284.96 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=333.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001618 69 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 69 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p 148 (1043)
+.+++. .+..|-++....-...++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445555 5566777777777788888999999999999999888888888899999999999999999999999999999
Q ss_pred CChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001618 149 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 228 (1043)
Q Consensus 149 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 228 (1043)
.+ ..++..++.++...|++++|+..+++++..+|++.. +..+|.++...|+ +.+|+..+++++..+|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 667889999999999999999999999999999999 9999999999988 999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhcCCCCCCh--
Q 001618 229 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYH-----SKGDY---EKAGLYYMASVKEINKPHEFI-- 297 (1043)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~-----~~g~~---~~A~~~~~~a~~~~~~~~~~~-- 297 (1043)
++.++...|..+.|+..++.+...+.. ..........+..+.. ..+++ ++|+..++.++...+..|...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999999888766531100 0000112222222222 22334 778888888886544444332
Q ss_pred --hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 001618 298 --FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 370 (1043)
Q Consensus 298 --~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~ 370 (1043)
.+.+....+++..|++++|+..|++++...|..+ .+...+|.+|...|++++|+.+|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 2222212344677999999999999988764322 244446889999999999999999998887765 355666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcC--------CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhc
Q 001618 371 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 439 (1043)
Q Consensus 371 la~~~-~~~~~~~A~~~~~~a~~~~~~~~--------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 439 (1043)
++.++ ..+++++|+..+..+....|... .+ ....++..++.++...|++++|+..|++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 88999999999888877654210 00 1134566777788888888888888888776
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHH
Q 001618 440 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 519 (1043)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 519 (1043)
..|.++.+++.+|.++...|++++|+..+++++..+|++..+++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 446677788888888888888888888888888888888888888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHcCCChHHHH
Q 001618 520 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 552 (1043)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (1043)
++.++...|++++|...++.++...|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 888888888888888888888888888776544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=252.17 Aligned_cols=465 Identities=14% Similarity=0.066 Sum_probs=308.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 001618 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 305 (1043)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 305 (1043)
++.-...+...|+|++|.+...+++... |.+..+++....++...+.|++|+.+.+.-.. ........+..++
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHH
Confidence 3333445666778888888888877554 66678888888899999999999865554331 1111122378999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALD 385 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~ 385 (1043)
|.++.+..++|+.++. ..++.+..++...|++++++|+|++|+.+|+.+++.+.++.+.......+-.. .+..
T Consensus 88 c~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~ 160 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQ 160 (652)
T ss_pred HHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----Hhhh
Confidence 9999999999999998 34566678999999999999999999999999988776665544333222100 0000
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhh
Q 001618 386 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 465 (1043)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1043)
. +.++..+.. ...+.+.++|.++++...|+|.+|++.+.+++.+|...-..+...
T Consensus 161 ~--~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~---------------------- 215 (652)
T KOG2376|consen 161 V--QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN---------------------- 215 (652)
T ss_pred H--HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc----------------------
Confidence 0 012222221 133578999999999999999999999999988764211000000
Q ss_pred hccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC---ChhH--HHHHHHHH
Q 001618 466 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN---NLQL--SIELVNEA 540 (1043)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~--A~~~~~~a 540 (1043)
.-++......+...++.++..+|+..+|..+|..++..+|.+........+.+.... ++.. ++..++..
T Consensus 216 ------eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 216 ------EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 001223456788899999999999999999999999998876544433333322221 1111 22222222
Q ss_pred HHHcCC----------ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhh
Q 001618 541 LKVNGK----------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 610 (1043)
Q Consensus 541 l~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 610 (1043)
....++ ...++.+.+.+.+-.+....+.+.....-...|......+ +-.. +... ..
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~ 355 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EK 355 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HH
Confidence 222211 1235556666666667667666666554333333222222 1111 1111 14
Q ss_pred hHHHHHHHHHHHHccCccc-HHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCC--CCCCchhHHHhHHHHHHHccCHHH
Q 001618 611 HLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFAL 687 (1043)
Q Consensus 611 ~~~~A~~~~~~~l~~~P~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~ 687 (1043)
.+.+|..++......+|.+ ....+.++++.+.+|++..|+.++..++...-.+ .....|.+--.+-..|+..+..+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 6889999999999999997 7778888999999999999999999444221100 001344455555566778888888
Q ss_pred HHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 688 AMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 688 A~~~~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
|...+..++..|..... -.++..++..-.+.|+-.+|...++.+++.+|+|..+...+..+|
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 99999999988754332 444556677777789999999999999999999988766655554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-26 Score=274.92 Aligned_cols=410 Identities=12% Similarity=0.001 Sum_probs=341.1
Q ss_pred HHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001618 42 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 121 (1043)
Q Consensus 42 ~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~ 121 (1043)
.....+....|... +|+..+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++.
T Consensus 19 ~d~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 19 ADWLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred HHHHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33455556666555 9999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
.++.++...|++.+|+..+++++...|++ .. ++.+|.++...|++.+|+..|++++..+|++..++..++.++...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999 55 89999999999999999999999999999999999999999988887
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhhcCCCCCch----HHHH
Q 001618 202 AAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF-----FTGQH---FLVEQLTETALAVTNHGPTKS----HSYY 264 (1043)
Q Consensus 202 ~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~~~~~~~~----~~~~ 264 (1043)
.+.|+..+.++.. .|.... ....+..+.. ..+++ ++|+..++.++...+..|... .+.+
T Consensus 166 ---~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 ---SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ---hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 8889999987765 544211 1222222222 22334 678888888887644444332 2223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHH
Q 001618 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHI 340 (1043)
Q Consensus 265 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~ 340 (1043)
....++...|++++|+..|++++...+..|.. +...+|.++...|++++|+.+|++++...|.+ ......++.+
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 32334568899999999999988632212333 34446999999999999999999999888765 4567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPR---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 404 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 404 (1043)
+...|++++|+.++.++....|. ...++..++.++ ..|++++|+..+++++...|. .+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~ 394 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQG 394 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH
Confidence 99999999999999999988763 235677888899 999999999999999887655 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHH
Q 001618 405 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 484 (1043)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1043)
++..+|.++...|++++|+..+++++. ..|++..+++
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~-------------------------------------------l~Pd~~~l~~ 431 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEV-------------------------------------------LEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------------------------hCCCChHHHH
Confidence 999999999999999999999999998 5688999999
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHH
Q 001618 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 518 (1043)
Q Consensus 485 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 518 (1043)
.+|.++...|++++|...++.++...|+++.+..
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999876543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-26 Score=269.11 Aligned_cols=337 Identities=11% Similarity=0.005 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
......+..++..|++.+|+..+...+. ..|....+++.+|.+....|+++.|+..|++++..+|+++.++..+|.+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3455556667777777777777777776 5566666777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 419 (1043)
+...|++++|+..|++++.++|+++.++..++.++ ..|++++|+..+..+....|. ++..+..++ .+...|++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-----~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-----RGDMIATCL-SFLNKSRL 193 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-----CHHHHHHHH-HHHHcCCH
Confidence 77777777777777777777777777777777777 777777777777766555432 234444333 36677777
Q ss_pred HHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHH
Q 001618 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 499 (1043)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 499 (1043)
++|+..+..++... ++........++.++...|++++|
T Consensus 194 ~eA~~~~~~~l~~~------------------------------------------~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 194 PEDHDLARALLPFF------------------------------------------ALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHHHHHHHHHhcC------------------------------------------CCcchhHHHHHHHHHHHCCCHHHH
Confidence 77777777766521 112223334556667777777777
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhh
Q 001618 500 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL----SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 575 (1043)
Q Consensus 500 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 575 (1043)
+..|.+++..+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++
T Consensus 232 ~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 232 IQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777764 6777777777777777777777777777777777777777777
Q ss_pred hcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHH
Q 001618 576 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 655 (1043)
Q Consensus 576 ~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~ 655 (1043)
...|. +..++..+|.+ |... |++++|+..|.+++..+|.+..+...+|.++...|++++|+..|++
T Consensus 312 ~l~P~-~~~a~~~La~~-l~~~------------G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 312 ATHPD-LPYVRAMYARA-LRQV------------GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HhCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 76665 45556666766 6666 7777777777777777777766666667777777777777777777
Q ss_pred HHHHhcC
Q 001618 656 VQEAASG 662 (1043)
Q Consensus 656 ~~~~~p~ 662 (1043)
+++..|.
T Consensus 378 al~~~P~ 384 (656)
T PRK15174 378 YIQARAS 384 (656)
T ss_pred HHHhChh
Confidence 7777663
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=268.07 Aligned_cols=325 Identities=12% Similarity=0.024 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
.|++.+|..++..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP- 220 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p- 220 (1043)
+++..+|++ ..++..+|.++...|++++|+..+.+++...|++..++..++. +...|+ +.+|+..+.+++..+|
T Consensus 135 ~Al~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 135 QAWLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCC
Confidence 999999999 6778999999999999999999999999999999988876644 677788 9999999999999876
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCCCC
Q 001618 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEF 296 (1043)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~a~~~~~~~~~~ 296 (1043)
........++.++...|++++|+..+..++.. .|.++.+++.+|.++...|++++ |+..|++++. ..|..
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~ 283 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDN 283 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCC
Confidence 34445566788899999999999999999965 47778999999999999999986 8999999998 66788
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001618 297 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 375 (1043)
Q Consensus 297 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~- 375 (1043)
..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|.+++..+|.+...+..++.++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988777788888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc
Q 001618 376 ISSDTGAALDAFKTARTLLKKA 397 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~ 397 (1043)
..|++++|+..|++++...|..
T Consensus 364 ~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999999987764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-25 Score=227.60 Aligned_cols=429 Identities=16% Similarity=0.161 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
..+-..|.-+++.|+|++|+++|..+|.+.|+. +..|-+++-||..+|++++-++...++++++|+.+.+++..+..+-
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 345566777778888888888888888888876 4567778888888888888888888888888888888888888887
Q ss_pred HhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCH
Q 001618 198 QANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 198 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 276 (1043)
..|+ +.+|+....-..-+. -.+......+-..+-.+ +..-...-++ ....|..+.+.+.-. |+.
T Consensus 195 ~lg~---~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k-~nr~p~lPS~~fi~s--yf~---- 259 (606)
T KOG0547|consen 195 QLGK---FDEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLK-ENRPPVLPSATFIAS--YFG---- 259 (606)
T ss_pred hhcc---HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhc-ccCCCCCCcHHHHHH--HHh----
Confidence 7777 777665443221111 01111111111111111 1111111111 011122222111100 000
Q ss_pred HHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHHC----CCc---------HHHHHHHHH
Q 001618 277 EKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKL---GDFRSALTNFEKVLEIY----PDN---------CETLKALGH 339 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~-~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~----p~~---------~~~~~~la~ 339 (1043)
.|..-+......+ ....+...-+.-.... ..|..|...+.+..... ..+ ..++...|.
T Consensus 260 -----sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 260 -----SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred -----hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 0000000000000 0000100001111111 13444444444332211 001 344455555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCH
Q 001618 340 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419 (1043)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 419 (1043)
.+.-.|++-.|...|..++.++|.+...|+.++.+ |....+.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~--------------------------------------y~d~~~~ 376 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAA--------------------------------------YADENQS 376 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHH--------------------------------------Hhhhhcc
Confidence 55555555566666666555555555555444444 4444455
Q ss_pred HHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHH
Q 001618 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 499 (1043)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 499 (1043)
.+-...|.++.. ++|.++.+|+..|.++.-++++++|
T Consensus 377 ~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 377 EKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred HHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHHHHHH
Confidence 555555555555 5567778888888888888888888
Q ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCC
Q 001618 500 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 579 (1043)
Q Consensus 500 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 579 (1043)
+.-|++++.++|+++-++..++.+..+++.+.++...|+.+...+|+.++++...+.++..+++|+.|.+.|.+++.+.|
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888766
Q ss_pred CCC-----hHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHH
Q 001618 580 GKD-----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 654 (1043)
Q Consensus 580 ~~~-----~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~ 654 (1043)
..+ .-.++.-+.+.+... +++..|+.++.++++.+|.+-.++-++|.+..++|+.++|+++|+
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk------------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK------------EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ccccccccchhhhhhhHhhhchh------------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 521 112222222201111 889999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 001618 655 QVQEAA 660 (1043)
Q Consensus 655 ~~~~~~ 660 (1043)
+...+.
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 998765
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=228.71 Aligned_cols=427 Identities=16% Similarity=0.152 Sum_probs=326.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
.+-.+|+-++..|+|++|+++|..++..+|+.+..+..++-||...|+|++.++...+++.++|+. .-+++..+.++..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 445579999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHh-cCCHH
Q 001618 165 LGQLGKARQAFQRALQLD-PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI-Y-PYCAMALNYLANHFFF-TGQHF 240 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~-~g~~~ 240 (1043)
+|++.+|+.-..-..-+. -.+......+-.++.. .|+.....-+.. . |.-|.+ ..++..+.. ..+.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk--------~a~~ka~e~~k~nr~p~lPS~-~fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK--------QAMKKAKEKLKENRPPVLPSA-TFIASYFGSFHADP- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH--------HHHHHHHHhhcccCCCCCCcH-HHHHHHHhhccccc-
Confidence 999999987665432211 1222222222233322 233334444441 2 222211 112111110 0000
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC-CC---------ChhhHHHHHHHH
Q 001618 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKP-HE---------FIFPYYGLGQVQ 307 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~---------~~~~~~~la~~~ 307 (1043)
..........+.+...-+.-.+..+ .|..|...+.+........ .. ...++...|..+
T Consensus 266 ---------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 266 ---------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred ---------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 0000000111222222222222233 5777777776655421111 11 256677888889
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHH
Q 001618 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDA 386 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~ 386 (1043)
+-.|++-.|...|..++.++|.+...|..++.+|...++.++....|.++..++|.++++|+..|.++ ..+++++|+.-
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001618 387 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 466 (1043)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1043)
|++++.+.|. ....+..++++.++.+.++++...|+.++.
T Consensus 417 F~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk----------------------------------- 456 (606)
T KOG0547|consen 417 FQKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK----------------------------------- 456 (606)
T ss_pred HHHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence 9999998776 477888899999999999999999999988
Q ss_pred ccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC------cHHHHHHHHHHHH-HcCChhHHHHHHHH
Q 001618 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVNE 539 (1043)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~ 539 (1043)
..|..+.++...|.++..+++++.|++.|..++.+.|. ++..+...+.+.. -.+++..|+.++++
T Consensus 457 --------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 457 --------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred --------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 45788999999999999999999999999999999988 5555555554433 34899999999999
Q ss_pred HHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCC
Q 001618 540 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 579 (1043)
Q Consensus 540 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 579 (1043)
+++++|.+..++..||.+.+++|+.++|+++|++++.+..
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-22 Score=243.53 Aligned_cols=544 Identities=11% Similarity=0.014 Sum_probs=326.0
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRAL 144 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~~l 144 (1043)
.++..++..+.-.+ +...++..-..+...|++.+|+.+|+.+...+. .+...+..+...+...|.+.+|+.+|..+.
T Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 355 NSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 34444444443322 333444445555667777777777777765542 233334444455666677777777766654
Q ss_pred HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-Cc
Q 001618 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 222 (1043)
Q Consensus 145 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~ 222 (1043)
. |+ ...|..+..++...|+++.|..+|..+.+.... +...+..+...|.+.|+ ++.|..+|..+..... .+
T Consensus 434 ~--pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 434 N--PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred C--CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCC
Confidence 3 43 345666666677777777777777777665432 55666677777777776 7777777777766542 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 302 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 302 (1043)
..+|..+...|.+.|++++|..+|..+.... ...+..+|..+...|.+.|++++|..+|..+.............+..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 6677777777777777777777777776432 12335667777777777777777777777776421111222455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-hcC
Q 001618 303 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQAFIDLGELL-ISS 378 (1043)
Q Consensus 303 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~-~~~ 378 (1043)
+...|.+.|++++|..+|+.+.+.. +.+...|..+...|.+.|++++|+.+|.++... .| +...|..+...+ ..|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCC
Confidence 7777777777777777777776654 345667777777777777777777777777654 24 355666666666 777
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
++++|..++..+.+. +...+..+++.+...|.+.|++++|..+|+.+...+
T Consensus 664 ~~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------------------------- 714 (1060)
T PLN03218 664 DLDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------- 714 (1060)
T ss_pred CHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Confidence 777777777665542 344456677777777777777777777777765421
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChhHHHHH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
..| +...|..+...|.+.|++++|..+|..+... .|+ ..+|..+...+...|+++.|..+
T Consensus 715 ----------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 715 ----------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred ----------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 122 4456777777777777777777777776653 333 55666666777777777777777
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHH
Q 001618 537 VNEALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 615 (1043)
Q Consensus 537 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 615 (1043)
+..+++.... +..++..+..++. +.+.+|.......+... .+.. +... +....|
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----------~g~~-~~~n------------~w~~~A 831 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----------SGRP-QIEN------------KWTSWA 831 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----------cccc-cccc------------chHHHH
Confidence 7777665422 2223333322221 23455544443333221 1111 1111 345567
Q ss_pred HHHHHHHHccCcc-cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHH
Q 001618 616 KELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 694 (1043)
Q Consensus 616 ~~~~~~~l~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 694 (1043)
+.+|++++...-. +...+..+..++...+....+..++..+... +...+...|..+.+.+.. ...+|..+|+.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~----~~~~~~~~y~~Li~g~~~--~~~~A~~l~~e 905 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS----ADSQKQSNLSTLVDGFGE--YDPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC----CCCcchhhhHHHHHhhcc--ChHHHHHHHHH
Confidence 7777777765421 3344444444555555555555444443221 122455566666666522 12467777777
Q ss_pred HHHHh
Q 001618 695 CLRKF 699 (1043)
Q Consensus 695 al~~~ 699 (1043)
+...-
T Consensus 906 m~~~G 910 (1060)
T PLN03218 906 AASLG 910 (1060)
T ss_pred HHHcC
Confidence 77654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-22 Score=240.35 Aligned_cols=545 Identities=13% Similarity=0.055 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 001618 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRA 178 (1043)
Q Consensus 100 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 178 (1043)
..++.+++..+...+ +...++.+-..+.+.|++.+|+.+|+.+...+.-. ....+..+..++...|...+|...|..+
T Consensus 354 ~~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 354 ENSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 334444444444333 44555555566778999999999999998776432 1333445666778889999999999877
Q ss_pred HhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001618 179 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 257 (1043)
Q Consensus 179 l~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 257 (1043)
.. | +...|..+...+...|+ ++.|..+|..+.... +.+..++..+...|...|+++.|..+|+.+.... ..
T Consensus 433 ~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~ 504 (1060)
T PLN03218 433 RN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VE 504 (1060)
T ss_pred CC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CC
Confidence 54 4 56778888888888888 999999999998865 3467899999999999999999999999998643 23
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHH
Q 001618 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCET 333 (1043)
Q Consensus 258 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~ 333 (1043)
.+..+|..+...|.+.|++++|+.+|..+... ........|..+...+.+.|++++|..+|..+... .| +..+
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vT 581 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHIT 581 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHH
Confidence 45789999999999999999999999998753 22234577999999999999999999999999763 34 4678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 001618 334 LKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 411 (1043)
Q Consensus 334 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~ 411 (1043)
+..+...|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+... +..++..+++.+..
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 8889999999999999999999998876 55778899999999 999999999999987653 44456788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHH
Q 001618 412 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 491 (1043)
Q Consensus 412 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 491 (1043)
.+...|++++|..+|..+.+.+ .+.+..++..+...|.
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G------------------------------------------~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQG------------------------------------------IKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcC------------------------------------------CCCCHHHHHHHHHHHH
Confidence 9999999999999999988742 1336678999999999
Q ss_pred hcCChHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CCChHHHHHHHHHhhhccchHHHH
Q 001618 492 QIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAK 568 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 568 (1043)
+.|++++|..+|+.+... .| +..+|..+...|...|++++|..+|..+.... ..+...+..+...+.+.|+++.|.
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998763 44 47889999999999999999999999987654 334567777888999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchH
Q 001618 569 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 648 (1043)
Q Consensus 569 ~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~ 648 (1043)
.+|..+++....++...+..+..+ +. +.+.+|......++..++.++ ....+....
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~---------~~~n~w~~~ 830 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRP---------QIENKWTSW 830 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhcccc---------ccccchHHH
Confidence 999999998877777766655433 21 446777766666555443322 222234567
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhc-HHHHHHH
Q 001618 649 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKKS 727 (1043)
Q Consensus 649 A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~-~~~A~~~ 727 (1043)
|+.+|+++++..- ..+...+..+-.|+...+....+..+++... .-+..++..++..|-..+ |+ ..+|...
T Consensus 831 Al~lf~eM~~~Gi----~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l 902 (1060)
T PLN03218 831 ALMVYRETISAGT----LPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSL 902 (1060)
T ss_pred HHHHHHHHHHCCC----CCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHH
Confidence 9999999998762 1345666666677888888888777766533 223444556666666655 33 3579999
Q ss_pred HHHHHHhC
Q 001618 728 LLRAIHLA 735 (1043)
Q Consensus 728 ~~ka~~~~ 735 (1043)
|+.+....
T Consensus 903 ~~em~~~G 910 (1060)
T PLN03218 903 LEEAASLG 910 (1060)
T ss_pred HHHHHHcC
Confidence 99998773
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-24 Score=257.94 Aligned_cols=445 Identities=13% Similarity=0.009 Sum_probs=355.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 304 (1043)
.|..+...+...|++.+|+.+|..+...... ..+..++..+..++...++++.|..++..+... +..| ...++..+.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~-~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEP-DQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCc-chHHHHHHH
Confidence 4566666777778888888888777643222 234567777888888888888888888777653 2223 356677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-hcCCHHH
Q 001618 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL-ISSDTGA 382 (1043)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~-~~~~~~~ 382 (1043)
.+|.+.|+++.|..+|+.+.. | +...|..+...|.+.|++++|+.+|.++....+ .+...+..+...+ ..+....
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 888888888888888887743 2 566788888888888999999999988876542 2345556666666 7788887
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001618 383 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 462 (1043)
Q Consensus 383 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1043)
+..++..+.+. +...+..+++.+...|.+.|++++|...|+...
T Consensus 243 ~~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------- 286 (697)
T PLN03081 243 GQQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------- 286 (697)
T ss_pred HHHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--------------------------------
Confidence 77766655443 334456788888999999999999999997643
Q ss_pred hhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001618 463 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541 (1043)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (1043)
+.+..+|..+...|...|++++|..+|.++.... ..+..++..+...+...|.+++|..++..++
T Consensus 287 --------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 287 --------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred --------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 2366788899999999999999999999987643 2246788899999999999999999999999
Q ss_pred HHc-CCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHH
Q 001618 542 KVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 620 (1043)
Q Consensus 542 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 620 (1043)
+.. +.+..++..+...|.+.|+++.|...|+++.. ++..+|..|... |... |+.++|+.+|+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~ 415 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GRGTKAVEMFE 415 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CCHHHHHHHHH
Confidence 886 66778899999999999999999999998754 367788888888 8888 99999999999
Q ss_pred HHHccCcc-cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 621 RVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 621 ~~l~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
++...... |..++..+...+.+.|.+++|..+|+.+.+..+ ...+..+|..+..+|.+.|++++|.+++++ .
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g---~~p~~~~y~~li~~l~r~G~~~eA~~~~~~----~ 488 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR---IKPRAMHYACMIELLGREGLLDEAYAMIRR----A 488 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC---CCCCccchHhHHHHHHhcCCHHHHHHHHHH----C
Confidence 99886533 677889999999999999999999999987543 113567899999999999999999998765 3
Q ss_pred cCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001618 700 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 700 ~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
+..++..+|..|..+|...|+.+.|..++++++.+.|++...+..++.+|
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 56678889999999999999999999999999999999888877777776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=218.58 Aligned_cols=460 Identities=18% Similarity=0.168 Sum_probs=357.2
Q ss_pred HHHHHHHHHHHHHHhh--cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChH
Q 001618 62 EEHFILATQYYNKASR--IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYS 134 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~a~~~la~~~~~~g~~~ 134 (1043)
...+.+|+..|+-+++ ..|+....-+.+|.+++++.+|.+|+++|+.++..-|.- ...+..+|..+.+.|.|+
T Consensus 214 ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 214 NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch
Confidence 4567789999987765 356777777889999999999999999999999988752 456778888999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh--------------CCCcHHHHHHHHHHHHHhh
Q 001618 135 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------------DPENVEALVALAVMDLQAN 200 (1043)
Q Consensus 135 ~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~a~~~la~~~~~~~ 200 (1043)
.|+..|+.+....|+. ..-+++..|++..|+-++-.+.|.+++.+ +|++.-....+-.-+++.-
T Consensus 294 dainsfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ 371 (840)
T KOG2003|consen 294 DAINSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNM 371 (840)
T ss_pred hhHhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHH
Confidence 9999999999999998 34577889999999999999999999875 2222111111111111111
Q ss_pred hHHhHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001618 201 EAAGIRKGMEKMQRAFEI-YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 279 (1043)
Q Consensus 201 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 279 (1043)
...+-..|......+.++ .|-. .-+|...-.++-..++.....+...+.-.+.+..+.+.|+++.|
T Consensus 372 ek~~ka~aek~i~ta~kiiapvi-------------~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 372 EKENKADAEKAIITAAKIIAPVI-------------APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHhhhhhHHHHHHHHHHHhcccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 111112222222222222 1110 01111112233333333333344445667788889999999999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 280 GLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 357 (1043)
Q Consensus 280 ~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (1043)
++++.-.-+. .+.....+-.+|..+++.. .++..|..+...++.++.-++.++.+.|.+.+..|++++|...|+++
T Consensus 439 ieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 439 IEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9988765542 2222234455666666653 47889999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhh
Q 001618 358 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 436 (1043)
Q Consensus 358 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (1043)
+..+.....+++++|..+ .+|+.++|+.+|-+...++.+ +.++++.++.+|..+.+..+|+++|.++..
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~s----- 586 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANS----- 586 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-----
Confidence 998888899999999999 999999999999998888766 489999999999999999999999999876
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHH
Q 001618 437 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 516 (1043)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 516 (1043)
.-|.++.++..||.+|-+.|+-.+|.+++-......|.+..+
T Consensus 587 --------------------------------------lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 587 --------------------------------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred --------------------------------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 568899999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHH
Q 001618 517 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 587 (1043)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 587 (1043)
.-+|+..|....-+++|+.+|+++--+.|+......+++.++.+.|+|..|...|+.+-...|. +...+-
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclk 698 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLK 698 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHH
Confidence 9999999999999999999999999999999888889999999999999999999998888776 444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-22 Score=240.54 Aligned_cols=469 Identities=10% Similarity=-0.029 Sum_probs=333.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001618 77 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156 (1043)
Q Consensus 77 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~ 156 (1043)
-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...++.++...|++++|+.++++++...|.. .....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-~~~ll 106 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-SRGLA 106 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-HHHHH
Confidence 34566777777777777777777777777777777777775444466667777777777777777777222222 22333
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 236 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 236 (1043)
.+|.++...|+++.|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++.++...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence 346677777777777777777777777777777777777777766 777777777777777775544 4445555556
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-----
Q 001618 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG----- 311 (1043)
Q Consensus 237 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g----- 311 (1043)
+++.+|+..+++++... |.+...+..+..++...|-...|......--..+ ...+........+.-.++.+
T Consensus 183 ~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 66656777777777543 6666777777777777777777766554322111 00111111111111111111
Q ss_pred -------CHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-
Q 001618 312 -------DFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL- 375 (1043)
Q Consensus 312 -------~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~- 375 (1043)
-.+.|+..++.++...+.. ..+..-...++...|++.+++..|+.+.... |--..+....|..|
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 2355777777777643332 2344456667788899999999999876544 33456777788888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhh-hhhcccccchhhhhhhhh
Q 001618 376 ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASAS 453 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~ 453 (1043)
..+++++|+.+|..++...+.. ...........|...|+..+++++|..++++.....|+ ....+...
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~---------- 408 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG---------- 408 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC----------
Confidence 9999999999999886643221 11222333567888999999999999999999875442 11111111
Q ss_pred HHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHH
Q 001618 454 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 533 (1043)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 533 (1043)
...+|+-......++.++...|++.+|+..++.++...|.++..++.+|.++...|.+..|
T Consensus 409 -------------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 409 -------------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred -------------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 1145677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCCh
Q 001618 534 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 583 (1043)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 583 (1043)
...++.+..++|.+..+...++.+++..++|.+|......++...|.+..
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 99999999999999999999999999999999999999999999887443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-22 Score=225.99 Aligned_cols=610 Identities=17% Similarity=0.124 Sum_probs=428.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
+...|...|-++++++|+...+|..+|.+|..--+...|..+|+++..++|.+..++-..+..|....+++.|..+.-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 46678888888899999988899999998888888888999999999999888888888888888888888888775555
Q ss_pred HHhCCCC-hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 144 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 144 l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
-+..|.. ....|..+|..|...+++..|+..|+.++..+|.+...|..+|.+|...|. +..|+..|.++..++|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHh
Confidence 5555433 123355577778888888888888888888888888888888888888887 888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCCchHHHHHHHHHHHHcCCHHH--------------------
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEK-------------------- 278 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~~~~la~~~~~~g~~~~-------------------- 278 (1043)
..+.+..+.+....|.|.+++..+...+..... .....+++..++..+...|-+.+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 877787888888888887777766665521100 00111122222222211111111
Q ss_pred ---------------------------------------------------HHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 001618 279 ---------------------------------------------------AGLYYMASVKEINKPHEFIFPYYGLGQVQ 307 (1043)
Q Consensus 279 ---------------------------------------------------A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 307 (1043)
+.+++-..+. -......|+++|..|
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls----l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS----LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH----HhhccchHHHHhHHH
Confidence 2222222222 122256688888887
Q ss_pred HH--------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC
Q 001618 308 LK--------LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS 378 (1043)
Q Consensus 308 ~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~ 378 (1043)
+. ..+...|+.++.++++...++...|..||.+ ...|++.-|...|-+.+...|.....|.++|.++ ...
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 75 2234589999999999999999999999998 6679999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
+++.|-..|.++..+.|. +...|...+.+....|+.-++...|...-..+...+
T Consensus 865 d~E~A~~af~~~qSLdP~-----nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g--------------------- 918 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPL-----NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG--------------------- 918 (1238)
T ss_pred cHHHhhHHHHhhhhcCch-----hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc---------------------
Confidence 999999999999888766 467788888888999999999999987444321000
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChH----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV----------AASVLYRLILFKYQDYVDAYLRLAAIAKARN 528 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 528 (1043)
.......|+.-.......|+++ .|.-.+.+.+..+|++..+|...|.....++
T Consensus 919 -----------------ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 919 -----------------KAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred -----------------ccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHH
Confidence 0011222333333344444444 4444555666789999999999999999999
Q ss_pred ChhHHHHHHHHHHHHc------CCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcc
Q 001618 529 NLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 602 (1043)
Q Consensus 529 ~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~ 602 (1043)
.+..|.....+++.+- ..++.+--.+|.+++..|.++.|...+...-..... +. .-+.++ .|..
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdE-di-~gt~l~---lFfk----- 1051 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDE-DI-RGTDLT---LFFK----- 1051 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHH-HH-hhhhHH---HHHH-----
Confidence 9999988888766542 233447778999999999999887776532211110 11 111122 2333
Q ss_pred cChhHHhhhHHHHHHHHHHHHccCcccH---HHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH
Q 001618 603 RAPKLEATHLEKAKELYTRVIVQHTSNL---YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 603 ~~~~~~~~~~~~A~~~~~~~l~~~P~~~---~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 679 (1043)
+++.++++.|++++.+..++. .....++++....+.-+.|...+-.+....| ....+.+.++-++
T Consensus 1052 -------ndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~-----~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1052 -------NDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSK-----VQASSLLPLPAVY 1119 (1238)
T ss_pred -------hHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCc-----cchhhHHHHHHHH
Confidence 889999999999998765533 3444556666778888999999999988776 5677888888777
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001618 680 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 747 (1043)
Q Consensus 680 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~ 747 (1043)
....+-.-.....+...+.- .... -.--+..-.++-..|+..-..+.++++++.+|+|+.+|-.|..
T Consensus 1120 ild~da~~ssaileel~kl~-k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1120 ILDADAHGSSAILEELEKLL-KLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHhhhhhhhHHHHHHHHHhh-hhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 66554433333333332220 1110 0011223345566788888889999999999999999888874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-24 Score=217.02 Aligned_cols=478 Identities=18% Similarity=0.171 Sum_probs=311.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHh
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 157 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~~ 157 (1043)
.+++.++..|.....+.+|+..|+-+++. .|+....-..+|.++++..+|.+|+++|+-++..-|... ..+..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788999999999999999999988864 576666778899999999999999999999999888763 334567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC--------------CCcH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 223 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--------------p~~~ 223 (1043)
+|..+.+.|.|+.|+..|+.+++..|+.. +-+.|..+++..|+ .++..+.|.+++.+. |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 88899999999999999999999999655 44566777788888 666677777777642 2211
Q ss_pred HHHHHHHHHHH---hcCCHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChh
Q 001618 224 MALNYLANHFF---FTGQHFLVEQLTETALAVTN--HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 298 (1043)
Q Consensus 224 ~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 298 (1043)
.+...+-.-.. ...+-..|.+..-.+.+... ..|..+..+-| .-..++.....+....
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw-----------------cle~lk~s~~~~la~d 420 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW-----------------CLESLKASQHAELAID 420 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH-----------------HHHHHHHhhhhhhhhh
Confidence 11111111110 01111112222222222110 00111111111 1111110001111222
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
.-...+-.+.+.|+++.|++++.-.-+.+... ..+-.+|..+++.+| ++..|..+-..++.++.-++.++.+.|.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 33455666777778887777776554433221 233444555555433 677777777777777777777777777766
Q ss_pred -hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhH
Q 001618 376 -ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 454 (1043)
Q Consensus 376 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 454 (1043)
..|++++|...|+.++..... ..++++++|..+-.+|++++|+.+|-+...+
T Consensus 501 f~ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i---------------------- 553 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI---------------------- 553 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH----------------------
Confidence 777777777777777654222 3567777777777777777777777665442
Q ss_pred HHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHH
Q 001618 455 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 534 (1043)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (1043)
--+++.+++.++.+|..+.+..+|+++|.++..+-|+++..+..|+.+|-+.|+..+|.
T Consensus 554 ---------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 554 ---------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred ---------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 12466777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHH
Q 001618 535 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 614 (1043)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 614 (1043)
.++-......|.+.++.-.++..|+...-+++|+.+|+++.-+.|....+.+ .++.+ +... |+|.+
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql-miasc-~rrs------------gnyqk 678 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL-MIASC-FRRS------------GNYQK 678 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH-HHHHH-HHhc------------ccHHH
Confidence 7777777777777777777777777777777777777777666554333322 22333 4444 77777
Q ss_pred HHHHHHHHHccCcccHHHHHHhHHHHHhcC
Q 001618 615 AKELYTRVIVQHTSNLYAANGAGVVLAEKG 644 (1043)
Q Consensus 615 A~~~~~~~l~~~P~~~~a~~~la~~~~~~g 644 (1043)
|+..|+..-...|.++..+..|..+....|
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 777777777777777777766666666555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-22 Score=238.88 Aligned_cols=443 Identities=12% Similarity=-0.002 Sum_probs=354.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
-+.|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|++|+.+
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567779999999999999999755558888999999999999999999944455566666668899999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
|++++..+|++ +.++..++.++...++.++|+..+++++..+|.+... ..++.++...++ ..+|+..+++++..+
T Consensus 125 y~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~ 199 (822)
T PRK14574 125 WQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhC
Confidence 99999999999 6778899999999999999999999999999986554 555555544444 666999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc---------C---CHHHHHHHHHHHH
Q 001618 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASV 287 (1043)
Q Consensus 220 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~a~ 287 (1043)
|.+..++..+...+...|-...|.++...--..... ..........+.-..+. . -.+.|+.-+...+
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887653221110 00011111111112211 1 2455666777766
Q ss_pred HhcCCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001618 288 KEINKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362 (1043)
Q Consensus 288 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 362 (1043)
...+..|. ...+..-.-.++...|++.+++..|+.+.... |--.-+....|..|...+++++|+.+|..++...|
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 64444343 23445566677889999999999999887544 22345788899999999999999999999988652
Q ss_pred ------CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh----------cCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 363 ------RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK----------AGEEVPIEVLNNIGVIHFEKGEFESAHQS 425 (1043)
Q Consensus 363 ------~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 425 (1043)
........|...+ ..+++++|..++.+.....|- .+.+.-......++.++...|++.+|...
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2333346667777 999999999999998875441 01112256777889999999999999999
Q ss_pred HHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHH
Q 001618 426 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 505 (1043)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 505 (1043)
+++.+. ..|.++.++..+|.++...|.+..|...++.
T Consensus 439 le~l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~ 475 (822)
T PRK14574 439 LEDLSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKA 475 (822)
T ss_pred HHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999987 5689999999999999999999999999999
Q ss_pred HHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHH
Q 001618 506 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 551 (1043)
Q Consensus 506 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (1043)
++..+|.+..+...++.++..++++.+|......++..+|+++.+.
T Consensus 476 a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 476 VESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999999998655
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-22 Score=245.94 Aligned_cols=462 Identities=12% Similarity=0.003 Sum_probs=318.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
.|......+...|++.+|+.+|..+.... +.+..++..+..++.+.+++..|..++..+..........++..+..+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45555555666666666666666665432 2244555555556666666666666666655543222234455555666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 242 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 242 (1043)
.+.|+++.|...|+.+.. | +...|+.+...|...|++++|
T Consensus 169 ~k~g~~~~A~~lf~~m~~--~--------------------------------------~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE--R--------------------------------------NLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred hcCCCHHHHHHHHhcCCC--C--------------------------------------CeeeHHHHHHHHHHCcCHHHH
Confidence 666666666666555421 1 333445555555555555555
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 243 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322 (1043)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 322 (1043)
+.+|..+.... ...+..++..+..++...|....+..++..+.+. .......++..+...|.+.|++++|..+|+.
T Consensus 209 ~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 209 FALFREMWEDG--SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHhC--CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55555555332 1223345566666666777777777776666542 1223345667777888888888888888776
Q ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001618 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 400 (1043)
Q Consensus 323 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 400 (1043)
+. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..++..+...+ ..|+++.|...+..+.+. +..
T Consensus 285 m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~~ 357 (697)
T PLN03081 285 MP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GFP 357 (697)
T ss_pred CC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CCC
Confidence 53 3467778888888888888888888888876543 22455677777777 888888888877766654 334
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchh
Q 001618 401 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480 (1043)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1043)
.+..+++.+...|.+.|++++|...|+++.. .+.
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------------------------------------------~d~ 391 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------------------------------------------KNL 391 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------CCe
Confidence 4567778888888888888888888876543 245
Q ss_pred HHHHhHHHHHHhcCChHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCC--ChHHHHHHHH
Q 001618 481 TVLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGD 556 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 556 (1043)
.+|..+...|...|+.++|+.+|+++... .|+ ..++..+...+...|..++|..+|+.+....+- +...+..+..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 67888888888888888898888888763 344 567778888888889999999999888765432 3456788888
Q ss_pred HhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHh
Q 001618 557 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 636 (1043)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~l 636 (1043)
++.+.|++++|.+.++++ ...++...|..|... +... |+++.|...+++++...|.++..+..+
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 899999999999888764 233466777777777 7777 889999999999999999988888899
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHh
Q 001618 637 GVVLAEKGQFDVSKDLFTQVQEAA 660 (1043)
Q Consensus 637 a~~~~~~g~~~~A~~~~~~~~~~~ 660 (1043)
+.+|...|++++|..+++.+.+..
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=213.53 Aligned_cols=464 Identities=14% Similarity=0.127 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 284 (1043)
Q Consensus 205 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 284 (1043)
|.-|+-.-.++..+. .+|.-.+.++.+++..|+|..|..+...-. ....+....+..+.++....++++|+.++.
T Consensus 32 y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~----le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 32 YKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYK----LEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred hhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666665555 566666667777777777776666554432 223444556666677777777777766665
Q ss_pred HHHHhc---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 285 ASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 285 ~a~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
..-... ...+.. . +......+.. ...+ -...+.+..|.+|....++++|...|.+++.
T Consensus 107 ~~~~~~~~f~yy~~~-----~-~~~l~~n~~~-----------~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKD-----A-ANTLELNSAG-----------EDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred ccchhhcchhhcchh-----h-hceeccCccc-----------ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 331100 000000 0 0000000000 0000 0122344455555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHH-hcC----------CH----HHHHHHHHHHHHHH-------------H---hcCCCCcHHHHHH
Q 001618 360 IDPRDAQAFIDLGELL-ISS----------DT----GAALDAFKTARTLL-------------K---KAGEEVPIEVLNN 408 (1043)
Q Consensus 360 ~~p~~~~~~~~la~~~-~~~----------~~----~~A~~~~~~a~~~~-------------~---~~~~~~~~~~~~~ 408 (1043)
.++.+..+...+.... ... ++ .+-.+.++....+. + -.+...+..++..
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 5554444333332211 000 00 00000011011100 0 0011224677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHH
Q 001618 409 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 488 (1043)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 488 (1043)
.+..++..++|.+...++...+.. .++.....-..+|
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~------------------------------------------dpfh~~~~~~~ia- 286 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK------------------------------------------DPFHLPCLPLHIA- 286 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh------------------------------------------CCCCcchHHHHHH-
Confidence 888899999999999999998874 2233334445556
Q ss_pred HHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHH
Q 001618 489 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 568 (1043)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 568 (1043)
++...|+..+-..+-.+++..+|+.+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+...|..++|+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAm 366 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAM 366 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHH
Confidence 88888998888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchH
Q 001618 569 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 648 (1043)
Q Consensus 569 ~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~ 648 (1043)
..|..+.+..++... ..+.+|.- |... ++++-|..+|.+++.+.|.++...+-+|.+....+.|.+
T Consensus 367 aaY~tAarl~~G~hl-P~LYlgme-y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 367 AAYFTAARLMPGCHL-PSLYLGME-YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HHHHHHHHhccCCcc-hHHHHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHH
Confidence 999999998776332 23335555 7777 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC--CCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHH
Q 001618 649 SKDLFTQVQEAASGSVF--VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 726 (1043)
Q Consensus 649 A~~~~~~~~~~~p~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~ 726 (1043)
|..+|+.++...+.... +.....+.||||+|.+++++.+||..|++++.. .+.++.++..+|.+|...|+++.|+.
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 99999999955432110 124456899999999999999999999999999 67789999999999999999999999
Q ss_pred HHHHHHHhCCCCcchhhHHHHHH
Q 001618 727 SLLRAIHLAPSNYTLRFDAGVAM 749 (1043)
Q Consensus 727 ~~~ka~~~~P~~~~~~~nla~~~ 749 (1043)
.|.+++-+.|+|..+.--|+.++
T Consensus 511 ~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 511 HFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999988766666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-22 Score=220.22 Aligned_cols=603 Identities=13% Similarity=0.051 Sum_probs=327.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
++.+..|..+|+.++..+|.+ ....|.+......|..|...+..+.... .|-..+..+..++.+.+.-.-=...|.
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~ 456 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLL 456 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHH
Confidence 345556666666666666655 4556666666677777777776666554 333334444444333110000000000
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
... ...|..++. ....+...|...|-+++.++|....++..||.+|....+ ...|..+|.++++++|.
T Consensus 457 ~~e-------~~~~w~a~~--~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDat 524 (1238)
T KOG1127|consen 457 ECE-------NSEFWVALG--CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDAT 524 (1238)
T ss_pred HHH-------HHHHHHHHH--HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCch
Confidence 000 001111111 122346667777777777777777777777777777665 66777777777777777
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHH
Q 001618 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301 (1043)
Q Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 301 (1043)
+..++-.++..|....+++.|..+.-.+-+.... ......|..+|..|...+++..|+..|+.+++ .+|....+|.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~ 600 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNLWL 600 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHHHH
Confidence 7777777777777777777776663333221110 11223455567777777777777777777776 5666667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHH
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-------AQAFIDLGEL 374 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~ 374 (1043)
.+|.+|...|.+..|++.|.++..++|.+.-..+..+.+....|.|.+|+..+..++...... ...++.++..
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd 680 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKD 680 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777666543222 2333333333
Q ss_pred H-hcCCHHHHHHHHHHHHHHHHhcCC---C--------------------------------------------------
Q 001618 375 L-ISSDTGAALDAFKTARTLLKKAGE---E-------------------------------------------------- 400 (1043)
Q Consensus 375 ~-~~~~~~~A~~~~~~a~~~~~~~~~---~-------------------------------------------------- 400 (1043)
+ ..|-...|..++++.+..+...-. .
T Consensus 681 ~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~L 760 (1238)
T KOG1127|consen 681 SAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFL 760 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHH
Confidence 3 344444444444444433221100 0
Q ss_pred ------------CcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhh
Q 001618 401 ------------VPIEVLNNIGVIHFE--------KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 401 ------------~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
..+..|+++|..|++ +.+...|+.++.+++.
T Consensus 761 g~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~----------------------------- 811 (1238)
T KOG1127|consen 761 GYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS----------------------------- 811 (1238)
T ss_pred HHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH-----------------------------
Confidence 001122222222221 0011122233333222
Q ss_pred hhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (1043)
...++...|..||.+ ...|++.-|..+|-+.+...|....+|+++|.++..+.+++-|...|..+
T Consensus 812 --------------L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 812 --------------LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred --------------HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhh
Confidence 223445555556555 44466666666666666666666666666666666666666666666666
Q ss_pred HHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHH-HhhcccChhH---HhhhHHHHH
Q 001618 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA-LRNEKRAPKL---EATHLEKAK 616 (1043)
Q Consensus 541 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~-~~~~~~~~~~---~~~~~~~A~ 616 (1043)
..++|.+...|...+.+....|+.-++...|...-..........-+.+. ++.. .+...++.+. ..+....|-
T Consensus 877 qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw---~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 877 QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW---LCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH---HHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 66666666666666666666666666666665532222111111111100 0000 0000000000 124444455
Q ss_pred HHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCC-CCCchhHHHhHHHHHHHccCHHHHHHHHHHH
Q 001618 617 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNC 695 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 695 (1043)
-.+.+.+..+|+...++...|..+.+.+.+..|.+...+.+......- ....+.+--+.|.+++..|.|+.|...+...
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 566777788999999999999999999999999999888776532100 0022224445666666666666554432111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 001618 696 LRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736 (1043)
Q Consensus 696 l~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P 736 (1043)
- ...+ +-........+-.|++.++.+.|++++.+.-
T Consensus 1034 ~----~evd-Edi~gt~l~lFfkndf~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1034 W----MEVD-EDIRGTDLTLFFKNDFFSSLEFFEQALSISN 1069 (1238)
T ss_pred c----hhHH-HHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 0 0111 1111112222445556666666666655544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-22 Score=212.33 Aligned_cols=447 Identities=17% Similarity=0.162 Sum_probs=362.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
..+|.-|+-+-+++..+. .+|.-.+.+|.+++..|+|..|......- .....+..+.+..+.++.....++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346888999999988776 78888899999999999999998887665 5556678899999999999999999999988
Q ss_pred HH------HHhCCCC------------------hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 142 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 142 ~~------l~~~p~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
.. +..+|.+ ...+.+..|.+|..+.+.++|...|..++..++.+.+++..|-...+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 33 1111111 12345667888999999999999999999999999888777665444
Q ss_pred HhhhH-----H------hHHHHHHHHHHHHHh-------------C--------CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 001618 198 QANEA-----A------GIRKGMEKMQRAFEI-------------Y--------PYCAMALNYLANHFFFTGQHFLVEQL 245 (1043)
Q Consensus 198 ~~~~~-----~------~~~~A~~~~~~al~~-------------~--------p~~~~~~~~la~~~~~~g~~~~A~~~ 245 (1043)
..... . ...+=.+.++..+++ + ..++.++...+..++..+++.+..++
T Consensus 187 lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 187 LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 33210 0 011111111111111 1 24677888889999999999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 246 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 325 (1043)
Q Consensus 246 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 325 (1043)
++..+... |-....+....-++...|+..+-..+-.+.+. ..|..+..|+.+|..|...|++.+|..+|.++..
T Consensus 267 t~~lle~d---pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 267 TEELLEKD---PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred hHHHHhhC---CCCcchHHHHHHHHHHhcccchHHHHHHHHHH---hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 99999664 44444444434488888887776666666666 7788888999999999999999999999999999
Q ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHH
Q 001618 326 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 404 (1043)
Q Consensus 326 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 404 (1043)
++|....+|...|..+.-.|..++|+..|..+.++-|......+.+|.-| ..+++.-|..+|.+++.+.|. ++-
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-----Dpl 415 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-----DPL 415 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-----cch
Confidence 99999999999999999999999999999999999999888888899989 899999999999999999876 588
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHH
Q 001618 405 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 484 (1043)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1043)
++..+|.+.+..+.|.+|..+|+.++..-+ + .....+.-.+++.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik--~----------------------------------~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIK--S----------------------------------VLNEKIFWEPTLN 459 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhh--h----------------------------------ccccccchhHHHH
Confidence 999999999999999999999999984210 0 0001113456899
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHH
Q 001618 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557 (1043)
Q Consensus 485 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 557 (1043)
+||.++.+++.+.+|+..|++++...|.++.++..+|.++..+|+++.|++.|.+++.+.|++..+-..|+.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998777766644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-21 Score=197.55 Aligned_cols=425 Identities=16% Similarity=0.082 Sum_probs=333.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-------------------HHHHHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-------------------DSLEFYKRALQ 145 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~-------------------~Al~~~~~~l~ 145 (1043)
..+.+|..|+....++.|.-.++.... ....+..-.+.+..|.-+ ..+..+.+-+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le 154 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLE 154 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHH
Confidence 346689999999999999888877653 222222222322222211 11222222222
Q ss_pred h---CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--
Q 001618 146 V---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-- 220 (1043)
Q Consensus 146 ~---~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-- 220 (1043)
. .-+..+..++..|.++...|....|+..|..++...|-+..+|..|+.+..... ........-|
T Consensus 155 ~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----------~~~~l~~~l~~~ 224 (559)
T KOG1155|consen 155 SKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----------ILSILVVGLPSD 224 (559)
T ss_pred HHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----------HHHHHHhcCccc
Confidence 1 222236678889999999999999999999999999999999999998754432 2222222233
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhH
Q 001618 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300 (1043)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 300 (1043)
.+...-..+..++....+.++++.-.+.....+ .|.....-...|.+.+.+.++++|+..|+.+.+ ++|....-.
T Consensus 225 ~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dm 299 (559)
T KOG1155|consen 225 MHWMKKFFLKKAYQELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDM 299 (559)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhH
Confidence 344555666777777778888777777766542 356667777889999999999999999999998 566666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001618 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 379 (1043)
Q Consensus 301 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~ 379 (1043)
-.+..+++-.++-.+-.-+...+..++.--++....+|.-|.-.++.++|+.+|+++++++|....+|..+|.-| ...+
T Consensus 300 dlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 300 DLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred HHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc
Confidence 667777777766666556666777788778889999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhh
Q 001618 380 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 459 (1043)
Q Consensus 380 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (1043)
...|+..|+.++.+.|. +..+|+.+|..|.-++...=|+-+|++++.
T Consensus 380 t~AAi~sYRrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---------------------------- 426 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE---------------------------- 426 (559)
T ss_pred cHHHHHHHHHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh----------------------------
Confidence 99999999999998776 578999999999999999999999999988
Q ss_pred hhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001618 460 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539 (1043)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (1043)
..|.+..+|..||.+|.+.++.++|+++|..++........+++.+|.++...++..+|..+|.+
T Consensus 427 ---------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 427 ---------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred ---------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56889999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHH-------cCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 540 ALKV-------NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 540 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
.+.. .|....+...|+..+.+.+++++|..+...++.-
T Consensus 492 ~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 492 YVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9884 4555668888999999999999998887776554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-20 Score=201.43 Aligned_cols=525 Identities=14% Similarity=0.108 Sum_probs=380.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 304 (1043)
.++..+.-.+..++|...+++++.+++. .|..++++...|..+...|+-++|..+...++. +++....+|+.+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---NDLKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhc---cCcccchhHHHHH
Confidence 4444455566788999999999999974 477789999999999999999999999999997 7788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHH
Q 001618 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAA 383 (1043)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A 383 (1043)
.++....+|++|+.+|..++.+.|+|..++..++.+..++++++.....-.+.++..|.....|+.++..+ ..|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhh
Q 001618 384 LDAFKTARTLLKKAGEEV---PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
...++............. ..+.......++...|.+++|++.+..--..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------------------------- 214 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---------------------------- 214 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----------------------------
Confidence 999888777653211111 1355556677888899989888887654321
Q ss_pred hhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHH-HHHHH
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNE 539 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~ 539 (1043)
.-+........+.++..++++++|..+|..++..+|++...+..+-.++..-.+.-+++ ..|..
T Consensus 215 ---------------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 215 ---------------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred ---------------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11234455567889999999999999999999999999998888888776333344444 55555
Q ss_pred HHHHcCCChHHHHHHHHHhhhccchH-HHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHH
Q 001618 540 ALKVNGKYPNALSMLGDLELKNDDWV-KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 618 (1043)
Q Consensus 540 al~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 618 (1043)
.-+..|........--.+... .++. ..-.++...++.+-.+-... +-.+ |-.. + ...-.++=+..
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p~vf~d---l~SL-yk~p--------~-k~~~le~Lvt~ 345 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVPSVFKD---LRSL-YKDP--------E-KVAFLEKLVTS 345 (700)
T ss_pred HhhcCcccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCCchhhh---hHHH-Hhch--------h-HhHHHHHHHHH
Confidence 555555544333222222222 2222 23334444444422111111 1111 1110 0 00111222222
Q ss_pred HHHHHcc-------------Ccc-cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccC
Q 001618 619 YTRVIVQ-------------HTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 684 (1043)
Q Consensus 619 ~~~~l~~-------------~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~ 684 (1043)
|...+.- .|. -.|.++.++.-+-..|+++.|..++..++...| ..++.|..-|.++...|.
T Consensus 346 y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-----TliEly~~KaRI~kH~G~ 420 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-----TLIELYLVKARIFKHAGL 420 (700)
T ss_pred HHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-----hHHHHHHHHHHHHHhcCC
Confidence 2222221 222 356677888889999999999999999999988 778899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHH--HhhhcCC
Q 001618 685 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSAS--TLQKTRR 762 (1043)
Q Consensus 685 ~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~~~~~--~l~~~~~ 762 (1043)
+++|..++..+... +.+|..+-...|.-..++++.++|.+++.+--... .+..-..+-..|++++.+. .+.+
T Consensus 421 l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~-~~~~~~L~~mqcmWf~~E~g~ay~r--- 494 (700)
T KOG1156|consen 421 LDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG-FGAVNNLAEMQCMWFQLEDGEAYLR--- 494 (700)
T ss_pred hHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc-cchhhhHHHhhhHHHhHhhhHHHHH---
Confidence 99999999999887 66676676688999999999999999887664432 3444444555666666552 2222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 001618 763 TADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEK--KINTHVEYC--KHLLDAAKIHREAAEREE 825 (1043)
Q Consensus 763 ~~~~l~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~--~~~l~~~~~~~~~~~~~e 825 (1043)
+..+-.|++......++|..|+..... +|.++.. .....+.+. .+.|......+++++.+.
T Consensus 495 -~~k~g~ALKkfh~i~k~~~~~~~dqfD-fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai 559 (700)
T KOG1156|consen 495 -QNKLGLALKKFHEIEKHYKTWSEDQFD-FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAI 559 (700)
T ss_pred -HHHHHHHHHHHhhHHHHHHHHhhhhhh-HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 235677889999999999999998765 6777776 344555555 566666666666666544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=219.41 Aligned_cols=314 Identities=20% Similarity=0.240 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001618 34 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 113 (1043)
Q Consensus 34 ~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 113 (1043)
....+.++-.+|..|..+..+ +..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-...
T Consensus 313 ~~~l~~llr~~~~~~~~~s~y---------~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 313 ASELMELLRGLGEGYRSLSQY---------NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677777788888777544 35689999999766677777788889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 114 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 114 p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
|-.+...-....++....+--+---+.+.++..+|.. +..|..+|.||..+++++.|+.+|+++++++|+...++..+|
T Consensus 384 p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlG 462 (638)
T KOG1126|consen 384 PYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLG 462 (638)
T ss_pred cccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcC
Confidence 9766555555566666655554445567778888998 778999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc
Q 001618 194 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 273 (1043)
Q Consensus 194 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 273 (1043)
.=+....+ ++.|+.+|++++..+|.+..+|+-+|.+|.++++++.|+-.|.+++. .+|.+......+|.++...
T Consensus 463 hE~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 463 HESIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQL 536 (638)
T ss_pred ChhhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHh
Confidence 88888877 99999999999999999999999999999999999999999999984 4578888888899999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
|+.++|+.+|++|+. .+|.++.+.+..|.+++..+++++|+..++.+-.+.|+...+++.+|.+|.+.|+.+.|+..
T Consensus 537 k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999987 67788888899999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 001618 354 LRKAAKIDPRDAQ 366 (1043)
Q Consensus 354 ~~~~l~~~p~~~~ 366 (1043)
|.-+..++|.-..
T Consensus 614 f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 614 FSWALDLDPKGAQ 626 (638)
T ss_pred hHHHhcCCCccch
Confidence 9988888887554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-19 Score=190.28 Aligned_cols=450 Identities=15% Similarity=0.151 Sum_probs=334.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
....++..+.-.+..++|...++..+.+++..|.++..+...|..+...|+-++|..+...++..++.+ ..+|..+|.+
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~ 84 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHH
Confidence 345677788888889999999999999999999999999999999999999999999999999999888 6789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+....+|++|+.+|..|+.++|+|...|.-|+.+..+.++ ++-....-.+.+++.|.....|..++..++..|++..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 8888888888999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 242 VEQLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
|..+.+...+.....+. ...+......++...|.+++|++.+..--. ..-+........+.++.+.+++++|
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999888876543332 244566667778888998888888766543 2223334456678899999999999
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001618 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 317 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 394 (1043)
+..|...+..+|++...+..+-.++.+..+--+++ ..|...-+..|.. .+...++... ...++.. .+.+.+...
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~---~vdkyL~~~ 314 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKE---IVDKYLRPL 314 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHH---HHHHHHHHH
Confidence 99999999999999988888877776333334444 5555544444433 2222233322 2222222 222222221
Q ss_pred HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCC---
Q 001618 395 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN--- 471 (1043)
Q Consensus 395 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 471 (1043)
-..|. +.+...+-.+|-.-. .. .++++.+. ++.+.+...+.
T Consensus 315 l~Kg~---p~vf~dl~SLyk~p~---k~-~~le~Lvt-----------------------------~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 315 LSKGV---PSVFKDLRSLYKDPE---KV-AFLEKLVT-----------------------------SYQHSLSGTGMFNF 358 (700)
T ss_pred hhcCC---CchhhhhHHHHhchh---Hh-HHHHHHHH-----------------------------HHHhhcccccCCCc
Confidence 11111 222233322222111 11 12332221 11111111110
Q ss_pred ----CCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCC
Q 001618 472 ----HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 547 (1043)
Q Consensus 472 ----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (1043)
..+.+......++.++..+...|+++.|..+...++...|..++.|...|.++...|++++|..++..+.+++-.+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 0123334556777889999999999999999999999999999999999999999999999999999999999877
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhhhcC
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAASDAT 578 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 578 (1043)
..+-...+...++.++.++|.++..+.-...
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 7777788888899999999999988776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-20 Score=189.93 Aligned_cols=376 Identities=16% Similarity=0.182 Sum_probs=317.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIG 159 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg 159 (1043)
.++..++..|.++-..|....|+..|..++...|-+-.+|..++.+... +.........-|. .....-+.++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence 4677888899999999999999999999999999999999998876543 3333333433453 2233345678
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCC
Q 001618 160 LCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 238 (1043)
.++..+...++++.-++..+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|....-.-...++++-..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 8888888999999999998888 78888888888888888888 9999999999999999888777777887777777
Q ss_pred HHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 001618 239 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318 (1043)
Q Consensus 239 ~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 318 (1043)
-.+..-+...+... +.-.+++...+|..|...++.++|+.+|+++++ .+|....+|..+|.-|..+.+...|+.
T Consensus 312 ~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 66655555555543 345668899999999999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc
Q 001618 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA 397 (1043)
Q Consensus 319 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~ 397 (1043)
.|+++++++|.+..+|+.||+.|.-++-..=|+-+|++++...|+++..|..||.+| ..++.++|+++|..++.....
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999876332
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCC
Q 001618 398 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477 (1043)
Q Consensus 398 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1043)
...++..+|.+|-+.++..+|..+|.+.+.... + .....+
T Consensus 465 ----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~----~--------------------------------eg~~~~ 504 (559)
T KOG1155|consen 465 ----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE----L--------------------------------EGEIDD 504 (559)
T ss_pred ----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----h--------------------------------hcccch
Confidence 468899999999999999999999999887310 0 001345
Q ss_pred chhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc
Q 001618 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513 (1043)
Q Consensus 478 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 513 (1043)
....+...|+..+.+.+++++|..+...++.-.+..
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 566777779999999999999998888877654443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-18 Score=189.48 Aligned_cols=413 Identities=20% Similarity=0.182 Sum_probs=308.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC
Q 001618 269 SYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 346 (1043)
Q Consensus 269 ~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 346 (1043)
++.-..+.++++-.....+.... ........+-.+...+...|+++.+.+.|++++...-...+.|+.++.+|...|.
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 34444455555544433332111 1223455677788889999999999999999998877888999999999999999
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcC-----
Q 001618 347 IEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG----- 417 (1043)
Q Consensus 347 ~~~A~~~~~~~l~~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g----- 417 (1043)
-..|+.+++..+... |.++..+...+.++ ..+..++++.+..+++...........+..+..+|.+|..+-
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 999999999999888 88888888888877 889999999999999997654445556778888888775332
Q ss_pred ------CHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHH
Q 001618 418 ------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 491 (1043)
Q Consensus 418 ------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 491 (1043)
...++++.++++++ .+|.++.+.+.++.-|.
T Consensus 453 ~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLALQYA 489 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHHHHH
Confidence 14456666666665 56788899999999999
Q ss_pred hcCChHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHH
Q 001618 492 QIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 570 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 570 (1043)
.+++...|....++++..++ +.+.+|..++.++...+++..|+.+...++...|.|.........+-...++.++|...
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence 99999999999999999955 56899999999999999999999999999999998766555555555555555555555
Q ss_pred HHHhhhcCC--------------------------------------------------------------CCCh-----
Q 001618 571 FRAASDATD--------------------------------------------------------------GKDS----- 583 (1043)
Q Consensus 571 ~~~~l~~~~--------------------------------------------------------------~~~~----- 583 (1043)
....+..-. .++.
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 443332111 0000
Q ss_pred -HHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC
Q 001618 584 -YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 662 (1043)
Q Consensus 584 -~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 662 (1043)
..|...+.. |.. .++.+.|..++.++-..+|..++.++..|.++...|.+.+|...|..++..+|
T Consensus 650 ~~lwllaa~~-~~~------------~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP- 715 (799)
T KOG4162|consen 650 QKLWLLAADL-FLL------------SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP- 715 (799)
T ss_pred HHHHHHHHHH-HHh------------cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-
Confidence 001111111 111 26677777778888888888888888888888888888888888888888877
Q ss_pred CCCCCchhHHHhHHHHHHHccCHHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 663 SVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 663 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
+.+.....+|.++...|+..-|.. ++..+++. ++.++++|++||.++.+.|+.+.|..+|.-++++.+.+|.
T Consensus 716 ----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 716 ----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 667777788888888887777776 77888877 6667788888888888888888888888888888888777
Q ss_pred hhhH
Q 001618 741 LRFD 744 (1043)
Q Consensus 741 ~~~n 744 (1043)
..|.
T Consensus 790 ~pFs 793 (799)
T KOG4162|consen 790 LPFS 793 (799)
T ss_pred cccc
Confidence 6553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-21 Score=202.03 Aligned_cols=450 Identities=17% Similarity=0.164 Sum_probs=258.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCC
Q 001618 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167 (1043)
Q Consensus 88 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~ 167 (1043)
..|...+..|+|+.|+.+|..++.++|.|...+.....+|...|+|.+|+..-.+.++++|+. +..|..+|..+.-+|+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhccc
Confidence 345566666666666666666666666666666666666666666666666666666666666 4456666666666666
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH------------------HhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001618 168 LGKARQAFQRALQLDPENVEALVALAVMDLQANEA------------------AGIRKGMEKMQRAFEIYPYCAMALNYL 229 (1043)
Q Consensus 168 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~------------------~~~~~A~~~~~~al~~~p~~~~~~~~l 229 (1043)
|++|+..|.+.|+.+|+|...+..|+.++...... .++-..-..|...+...|.++..+...
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 66666666666666666666666665555211000 001111112222222222222111100
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh----------c-CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChh
Q 001618 230 ANHFFFTGQHFLVEQLTETALAV----------T-NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 298 (1043)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~~l~~----------~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 298 (1043)
. . .....+........ . ...+..+. ...-...-..++..+-...- ....
T Consensus 166 l----~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~d~~ee~~~k-----------~~a~ 225 (539)
T KOG0548|consen 166 L----N---DPRLMKADGQLKGVDELLFYASGIEILASMAEPC--KQEHNGFPIIEDNTEERRVK-----------EKAH 225 (539)
T ss_pred c----c---cHHHHHHHHHHhcCccccccccccccCCCCCCcc--cccCCCCCccchhHHHHHHH-----------Hhhh
Confidence 0 0 00000000000000 0 00000000 00000000000000000000 0112
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 378 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 378 (1043)
..-.+|...++..++..|++.|..++.++ .+...+.+.+.+|+..|.+...+.....+++.......-+..+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI------- 297 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI------- 297 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH-------
Confidence 24556677777777777777777777777 6666777777777777777776666666444322111111110
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
...+..+|..|...++++.|+.+|++++....
T Consensus 298 ------------------------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R------------------------ 329 (539)
T KOG0548|consen 298 ------------------------AKALARLGNAYTKREDYEGAIKYYQKALTEHR------------------------ 329 (539)
T ss_pred ------------------------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc------------------------
Confidence 22333367778888999999999998876210
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 538 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (1043)
. ..+.......++++.......-.+|.-...-..-|..++..|+|..|+..|.
T Consensus 330 --------------------t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 330 --------------------T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred --------------------C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 1 3334445556677777776666777766666667888888888888888888
Q ss_pred HHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHH
Q 001618 539 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 618 (1043)
Q Consensus 539 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 618 (1043)
+++..+|+++.++.+.+.+|.++|.+..|+...+.++++.|+ ..-+++.-|.+ ++.+ .+|++|++.
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAlea 448 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEA 448 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHH
Confidence 888888888888888888888888888888888888888665 56667777777 7777 888999999
Q ss_pred HHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHH
Q 001618 619 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 655 (1043)
Q Consensus 619 ~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~ 655 (1043)
|.++++.+|++..+..++..+...+.......++.++
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999988888888887777765333344444444
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-19 Score=183.67 Aligned_cols=470 Identities=16% Similarity=0.200 Sum_probs=386.4
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001618 69 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 69 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p 148 (1043)
...|+..++.+.-+...|+..|.--..++++..|..+|+++|..+..+...|+..+.+-++.+....|..++++++.+-|
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 44566666777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001618 149 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 228 (1043)
Q Consensus 149 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 228 (1043)
.. ...|+....+--.+|+...|.++|++.+...|+ ..+|......-++.++ .+.|...|++.+-.+|. +..|..
T Consensus 139 RV-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~-v~~wik 212 (677)
T KOG1915|consen 139 RV-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKE---IERARSIYERFVLVHPK-VSNWIK 212 (677)
T ss_pred hH-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhH---HHHHHHHHHHHheeccc-HHHHHH
Confidence 98 677888888889999999999999999999984 6788888888888877 99999999999888864 568888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 001618 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 308 (1043)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 308 (1043)
.+..-...|+...+..+|+.++.....+......+...|..-..+..++.|..+|.-++..++.+.. ...+-.+...--
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEK 291 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEK 291 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHH
Confidence 8999999999999999999999876665555566777777788889999999999999986543211 222333333333
Q ss_pred HcCCH---HHHH-----HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHH
Q 001618 309 KLGDF---RSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD---------AQAFIDL 371 (1043)
Q Consensus 309 ~~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~l 371 (1043)
+-|+. +.++ -.|+..+..+|.|.++|+....+-...|+.+.-.+.|++++...|.. ..+|++.
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 44543 3443 25777888999999999999999999999999999999999876653 3455555
Q ss_pred HHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhh
Q 001618 372 GELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 449 (1043)
Q Consensus 372 a~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (1043)
+..- ...+.+.+...|+.++.+.|... -.-..++...+....++.+...|...+-.++..||
T Consensus 372 alyeEle~ed~ertr~vyq~~l~lIPHkk-FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP--------------- 435 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDLIPHKK-FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP--------------- 435 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC---------------
Confidence 5544 67899999999999999887632 22367888889999999999999999999999876
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC
Q 001618 450 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 529 (1043)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 529 (1043)
...+.-....+-.++++++....+|++.+.-.|.+-.+|...|.+-..+|+
T Consensus 436 -----------------------------K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 436 -----------------------------KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred -----------------------------chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 233444445566778999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCh--HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhH
Q 001618 530 LQLSIELVNEALKVNGKYP--NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 592 (1043)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 592 (1043)
.+.|..+|.-+++...-+. .+|-.+..+-...|.++.|..+|++++...+. ..+|++.+..
T Consensus 487 tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvWisFA~f 549 (677)
T KOG1915|consen 487 TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHHHhHHHH
Confidence 9999999999988764433 36677788888899999999999999998664 3356555533
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-20 Score=211.53 Aligned_cols=301 Identities=20% Similarity=0.123 Sum_probs=247.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIG 159 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg 159 (1043)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.++++++...+.. ...++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34667789999999999999999999999999999999999999999999999999999998754332 124678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-----MALNYLANHFF 234 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 234 (1043)
.++...|+++.|..+|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+. ..+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 9999999999999887653 24556788888
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHcCCH
Q 001618 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 313 (1043)
Q Consensus 235 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~la~~~~~~g~~ 313 (1043)
..|++++|+.++.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 8888888888888888653 455678888888888888888888888888863 3332 34567788888888888
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h--cCCHHHHHHHHHHH
Q 001618 314 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKTA 390 (1043)
Q Consensus 314 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~a 390 (1043)
++|+..+++++...|+... +..++.++...|++++|+..|.+++...|++......+...+ . .|+..+++..+++.
T Consensus 266 ~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 8888888888888887644 477888888888888888888888888888776554454444 2 45777888877777
Q ss_pred HHH
Q 001618 391 RTL 393 (1043)
Q Consensus 391 ~~~ 393 (1043)
++.
T Consensus 345 ~~~ 347 (389)
T PRK11788 345 VGE 347 (389)
T ss_pred HHH
Confidence 653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-20 Score=182.72 Aligned_cols=346 Identities=18% Similarity=0.191 Sum_probs=277.3
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHh
Q 001618 78 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 157 (1043)
Q Consensus 78 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~ 157 (1043)
.+|.++.-.+.+|..++..|++..|+..|..++..+|++..+++..|.+|..+|+-..|+..+.+++.+.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3566777889999999999999999999999999999999999999999999999999999999999999999 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 234 (1043)
.|.+++++|.++.|..-|..++..+|++... ...++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 9999999999999999999999999965432 2211111000
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHH
Q 001618 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 314 (1043)
Q Consensus 235 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~ 314 (1043)
..+......++..|++..|+.++..++. ..|..+..+...+.+|+..|++.
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1122223345566788888888888876 56777777888899999999999
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001618 315 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 315 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 394 (1043)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+++++++|+.-..+- .|.++.++.
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----------------~YKklkKv~ 270 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----------------FYKKLKKVV 270 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH----------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998755443 222222221
Q ss_pred HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCC
Q 001618 395 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 474 (1043)
Q Consensus 395 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1043)
.. ..-+......+.|.+++...++.++..|.
T Consensus 271 K~----------les~e~~ie~~~~t~cle~ge~vlk~ep~--------------------------------------- 301 (504)
T KOG0624|consen 271 KS----------LESAEQAIEEKHWTECLEAGEKVLKNEPE--------------------------------------- 301 (504)
T ss_pred HH----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------
Confidence 11 01123345667888888888888874320
Q ss_pred CCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
..+........+..|+..-+++.+|+..+..++..+|+++.++...+..|+....|+.|+..|+++...++++..+.-.+
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 11223334445677888999999999999999999999999999999999999999999999999999999988765443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=212.00 Aligned_cols=290 Identities=20% Similarity=0.237 Sum_probs=178.6
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK 211 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~ 211 (1043)
+..+|+..|.+.-...++. ..++..+|..|+.+++|++|..+|+.+-.+.|-.+...-.+..++....+ .-+--.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt-~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNT-GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 3445555555533334444 35555555555555555555555555555555444333333333333322 1111112
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001618 212 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 291 (1043)
Q Consensus 212 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 291 (1043)
.+..+..+|..|..|..+|.+|..+++++.|++.|+++++. +|....+|..+|.-+.....|+.|..+|+.++.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 23344555666666666666666666666666666666643 345556666666666667777777777777665
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001618 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371 (1043)
Q Consensus 292 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 371 (1043)
.+|....+|+++|.+|.++++++.|.-.|++++.++|.+..++..+|.++.+.|+.++|+.+|++++.++|.++-..+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 55666667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhh
Q 001618 372 GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 436 (1043)
Q Consensus 372 a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 436 (1043)
+.++ ..+++.+|+..++++..+.|+ ...+++.+|.+|.+.|+.+.|+..|.-|..+.|.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-----es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-----ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-----hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7766 677777777777766666555 35666677777777777777777777776665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=214.92 Aligned_cols=272 Identities=19% Similarity=0.176 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS 378 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 378 (1043)
..+..|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+++.++...+....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------ 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------
Confidence 34455666666677777777777777766666666666777777777777777666666553221110
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
....++..+|.++...|+++.|+.+|.+++.
T Consensus 105 ----------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~--------------------------- 135 (389)
T PRK11788 105 ----------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVD--------------------------- 135 (389)
T ss_pred ----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc---------------------------
Confidence 0012344445555555555555555555543
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcH-----HHHHHHHHHHHHcCChhHH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLS 533 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A 533 (1043)
..|....++..++.++...|++++|+..+..++...|... ..+..++.++...|++++|
T Consensus 136 ----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 136 ----------------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred ----------------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 1233444455555555555555555555555555444321 1233444445555555555
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHH
Q 001618 534 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 613 (1043)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 613 (1043)
+.+|++++..+|.+..++..+|.++...|++++|+..|++++...|......+..++.+ |... |+++
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~ 266 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEA 266 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHH
Confidence 55555555555555555555555555555555555555554444332222233333333 4333 4444
Q ss_pred HHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhc
Q 001618 614 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 614 ~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 661 (1043)
+|+..+++++..+|+...+ ..++.++...|++++|+.+|++++...|
T Consensus 267 ~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 4444444444444433222 3444444444444444444444444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-18 Score=189.73 Aligned_cols=436 Identities=17% Similarity=0.132 Sum_probs=337.5
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHh
Q 001618 80 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLG 157 (1043)
Q Consensus 80 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~--p~~~~~~~~~ 157 (1043)
.+++.+|-.+...+...|+|..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |.++....+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35777888888999999999999999999998887788999999999999999999999999999988 7776677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAM 224 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~ 224 (1043)
-..|+...+.+++++.+..+++.... -.+.++..+|.+|...-. .....++++.++++++.+|+|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 77888899999999999999998431 134567777777755422 12257889999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la 304 (1043)
+.++++.-|...++...|......++.... ...+.+|..++.++...+++..|+.+...++... +.+........
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~---~~N~~l~~~~~ 554 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF---GDNHVLMDGKI 554 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---hhhhhhchhhh
Confidence 999999999999999999999999997632 3556889999999999999999999999998854 34444455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001618 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---------HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 305 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
.+-...++.++|+..+...+........+-..++ .+....++..+|+..+.++. ...
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls--------------~l~ 620 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS--------------SLV 620 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH--------------HHH
Confidence 6666788999999988888776543333333332 11111112222222222211 111
Q ss_pred hcCCHHHHHHHHHHHHHHHHhc---CCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhh
Q 001618 376 ISSDTGAALDAFKTARTLLKKA---GEEV-----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 447 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~---~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 447 (1043)
. .+...+. +.. . .|.. ..+. ...+|...+..+...++.++|..++.++..
T Consensus 621 a-~~~~~~~--se~--~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---------------- 678 (799)
T KOG4162|consen 621 A-SQLKSAG--SEL--K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---------------- 678 (799)
T ss_pred H-hhhhhcc--ccc--c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----------------
Confidence 0 0000000 000 0 1110 0000 135667788889999999999999999887
Q ss_pred hhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Q 001618 448 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 527 (1043)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 527 (1043)
+.|..+.+++..|.++...|+..+|...|..++.++|+++.+...+|.++...
T Consensus 679 ---------------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 679 ---------------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred ---------------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHH--HHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCCh
Q 001618 528 NNLQLSIE--LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 583 (1043)
Q Consensus 528 g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 583 (1043)
|+..-|.. ++..+++++|.++++|+.+|.++.+.|+...|..+|.-++++.++...
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99888888 999999999999999999999999999999999999999998766443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=178.60 Aligned_cols=304 Identities=16% Similarity=0.122 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 142 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 142 (1043)
++|..|+..|-.++..+|++..+++.+|.+|+..|+-.-|+.-|.+++.+.|+...+.+..|.+++++|.++.|...|..
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 46669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChh--------------HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHH
Q 001618 143 ALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 208 (1043)
Q Consensus 143 ~l~~~p~~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A 208 (1043)
++..+|++.. .........++..|+...|+......|++.|-+...+...+.+|...|+ ...|
T Consensus 132 vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e---~k~A 208 (504)
T KOG0624|consen 132 VLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE---PKKA 208 (504)
T ss_pred HHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc---HHHH
Confidence 9999996511 1123344556677999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHH---------HHHHHHcCCHHHH
Q 001618 209 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL---------ARSYHSKGDYEKA 279 (1043)
Q Consensus 209 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A 279 (1043)
+..+..+-++..++...++.++.+++..|+.+.++......++..+........|-.+ +......++|.++
T Consensus 209 I~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 209 IHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999999997654433222222222 3345667888999
Q ss_pred HHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 280 GLYYMASVKEINKPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 280 ~~~~~~a~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
+...++.++ ..|.. ...+-.+..|+...+++.+|+..+..++.++|+++.++...+.+|+-...|+.|+..|+
T Consensus 289 le~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 289 LEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999988887 44442 33345577888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH
Q 001618 356 KAAKIDPRDAQAFIDLG 372 (1043)
Q Consensus 356 ~~l~~~p~~~~~~~~la 372 (1043)
++.+.++++..+.-.+-
T Consensus 366 ~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 366 KALELNESNTRAREGLE 382 (504)
T ss_pred HHHhcCcccHHHHHHHH
Confidence 99999998877665443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-18 Score=184.25 Aligned_cols=437 Identities=17% Similarity=0.139 Sum_probs=297.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 265 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
..|...+..|+|+.|+.+|..++. .+|.+...+.+...+|...|+|++|+.--.+..++.|+-+..|..+|..+.-+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~---l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIM---LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHc---cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 456667777888888888887776 45556666777777888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cCCHHHHH
Q 001618 345 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE-KGEFESAH 423 (1043)
Q Consensus 345 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 423 (1043)
|+|++|+..|.+.++.+|++..+...++.++ .-+.. +...|. .+.++..+...-.. .-..+.+.
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~-~~~~~~-------------~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYA-ADQLFT-------------KPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHH-hhhhcc-------------CcHHHHHhhcChhhhhhhccHHH
Confidence 8888888888888888888877777777766 10100 011110 01111111110000 00011111
Q ss_pred HHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC---------------CCCCCCC------chhHH
Q 001618 424 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG---------------NHVELPW------NKVTV 482 (1043)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~------~~~~~ 482 (1043)
......+..+|.+-.+... ...+-...+.+.......+....... ..+.... ....-
T Consensus 149 ~~~l~~~~~~p~~l~~~l~--d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ 226 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLN--DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHK 226 (539)
T ss_pred HHHHHHhhcCcHhhhcccc--cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhH
Confidence 1111111111100000000 00000000000000000000000000 0000000 12234
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCCh-------HHHHHHH
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLG 555 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~ 555 (1043)
...+|.......++..|++.|..++.++ .....+...+.+++..|.+..++.....+++..-... .+...+|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999 8888899999999999999999988888777654322 2344467
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~ 635 (1043)
..|.+.++++.|+.+|.+++..+..++. .... +..++++.......-.+|.-......
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~----------ls~l------------k~~Ek~~k~~e~~a~~~pe~A~e~r~ 363 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL----------LSKL------------KEAEKALKEAERKAYINPEKAEEERE 363 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH----------HHHH------------HHHHHHHHHHHHHHhhChhHHHHHHH
Confidence 7888889999999999998876543222 2222 67788888888888888887666677
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
-|..+...|+|..|+..|.+++...| +++..|.|.|.||..+|.+..|+.-.+.+++. +++....+..-|.++
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~P-----~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRDP-----EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAAL 436 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCC-----chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHH
Confidence 79999999999999999999999998 88999999999999999999999999999999 677799999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~ 751 (1043)
+...+|+.|.+.|.++++.+|++..+.-.+.-|++.
T Consensus 437 ~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 437 RAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999999998887777777643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-18 Score=173.39 Aligned_cols=435 Identities=17% Similarity=0.105 Sum_probs=328.2
Q ss_pred hHHHHHHHHHHHHHHHhhc--------------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001618 60 EKEEHFILATQYYNKASRI--------------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~--------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a 119 (1043)
..+..|..|.+.|..++++ .|.+.......+.+|...++-+.|+..+..+.... ..+..
T Consensus 54 ~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~i 132 (564)
T KOG1174|consen 54 YKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRI 132 (564)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhH
Confidence 4456677788888777644 23455667778999999999999999887765433 24666
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---HHHHHHH
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMD 196 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~~la~~~ 196 (1043)
.+.++..+-..++-.++.--|..++...|-.... ..+..-....-++.+-.. -.++...|.....| ..++.++
T Consensus 133 nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~---i~~ll~l~v~g~e~~S~~-m~~~~~~~~~dwls~wika~Aq~~ 208 (564)
T KOG1174|consen 133 NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV---IEALLELGVNGNEINSLV-MHAATVPDHFDWLSKWIKALAQMF 208 (564)
T ss_pred HHHHHHHHhccccccHHHHhhhHHHHhcchHHHH---HHHHHHHhhcchhhhhhh-hhheecCCCccHHHHHHHHHHHHH
Confidence 6777777777777667777777777766544111 111111111112222111 12233444433332 2233333
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCH
Q 001618 197 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 197 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~ 276 (1043)
...+. +.-+..++-......|+|...+..+|.+++..|++.+|+-.|+++... +|....+.-..|..+...|++
T Consensus 209 ~~~hs---~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 209 NFKHS---DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred hcccc---hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCH
Confidence 33332 555666667777788999999999999999999999999999998854 467777788888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 277 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 356 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 356 (1043)
++--.+....+. ........|+.-+..++..+++..|+.+.++++..+|.+..++...|.++...|+.++|+-.|+.
T Consensus 283 e~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 283 EQDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred hhHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 988777777665 34455666888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH-HH-HHHcCCHHHHHHHHHHHHcch
Q 001618 357 AAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG-VI-HFEKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la-~~-~~~~g~~~~A~~~~~~al~~~ 433 (1043)
+..+.|.....|..|..+| ..+.+.+|......+++.++. +...+..+| .+ ...----++|..++++++.
T Consensus 360 Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-----sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-- 432 (564)
T KOG1174|consen 360 AQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-----SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-- 432 (564)
T ss_pred HHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-----chhhhhhhcceeeccCchhHHHHHHHHHhhhc--
Confidence 9999999999999999999 999999999988888888776 356666665 33 3334456788888888887
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc
Q 001618 434 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513 (1043)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 513 (1043)
+.|....+...+|.++...|.+..++.++++.+...|+
T Consensus 433 -----------------------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D- 470 (564)
T KOG1174|consen 433 -----------------------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD- 470 (564)
T ss_pred -----------------------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-
Confidence 56788888899999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHH
Q 001618 514 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557 (1043)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 557 (1043)
...+..||.++...+.+++|+..|..++.++|.+..+...+-.+
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 46788899999999999999999999999999987766555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-16 Score=162.81 Aligned_cols=467 Identities=17% Similarity=0.148 Sum_probs=361.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001618 103 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 182 (1043)
.+.|+..+..+.-+...|...|.--..++++..|..+|+++|..+..+ ..+|+..+.+-++......|..+|.+++.+-
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 455666677777778899999999999999999999999999999887 6779999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001618 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 262 (1043)
Q Consensus 183 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 262 (1043)
|.-...|+....+--..|+ ..-|.++|.+.+...|+ ..+|......-.+.+..+.|..+|++.+-.. .....
T Consensus 138 PRVdqlWyKY~ymEE~LgN---i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~H----P~v~~ 209 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGN---IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVH----PKVSN 209 (677)
T ss_pred chHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheec----ccHHH
Confidence 9988889888888888888 99999999999999885 4588888888889999999999999988543 34577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHH
Q 001618 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN--CETLKALGHI 340 (1043)
Q Consensus 263 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~ 340 (1043)
|...+..-...|+..-|..+|..++..+++.......+...|..-..+..++.|.-+|.-++..-|.+ ..++..+...
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 88899999999999999999999998776655555556666677777889999999999999988887 3444444444
Q ss_pred HHHcCCH---HHHH-----HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc----HHHHH
Q 001618 341 YVQLGQI---EKAQ-----ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP----IEVLN 407 (1043)
Q Consensus 341 ~~~~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~ 407 (1043)
--+-|+. +.++ --|++.+..+|.+.++|+.+..+. ..|+.+.-...|++++...|....... ..++.
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Confidence 4455653 3333 346777888999999999999999 889999999999999876554222111 12222
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 408 NIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 408 ~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
+.+. .-+...+.+.+.+.|+.++++-|. ..-....+|...
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~lIPH---------------------------------------kkFtFaKiWlmy 410 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDLIPH---------------------------------------KKFTFAKIWLMY 410 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcCc---------------------------------------ccchHHHHHHHH
Confidence 2222 124567888888888888874220 112356678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHH
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 566 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 566 (1043)
|.....+.+...|.+++-.++..+|.+ ..+-....+-.++++++.+..+|++.+..+|.+..+|..+|.+-..+|+++.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 888888889999999999999888874 4445555667778889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccH
Q 001618 567 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 630 (1043)
Q Consensus 567 A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 630 (1043)
|..+|.-+++... -+..-++- .. |... +.+.|.+++|..+|+++|...+...
T Consensus 490 aRaifelAi~qp~-ldmpellw--ka-YIdF--------Ei~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 490 ARAIFELAISQPA-LDMPELLW--KA-YIDF--------EIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHHhcCcc-cccHHHHH--HH-hhhh--------hhhcchHHHHHHHHHHHHHhcccch
Confidence 9999988887533 23332211 11 2222 1122777888888888777766543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-17 Score=167.58 Aligned_cols=314 Identities=16% Similarity=0.085 Sum_probs=257.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 265 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
..+.+.+..++...|...+-.+-. ...-+.+...+..+|.+++..|++.+|+..|+++..++|.+...+-..|.++.+.
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~e 279 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQE 279 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhc
Confidence 345555555665555555544332 2245677788888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001618 345 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 345 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
|+++.--.+...++........-|+.-+.++ ..+++..|+.+-.+++...+. +...+..-|.++...|+.++|+
T Consensus 280 g~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 280 GGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred cCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHH
Confidence 9999888888888887766667777766666 888999999999888887554 4677888899999999999999
Q ss_pred HHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHH
Q 001618 424 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 503 (1043)
Q Consensus 424 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 503 (1043)
-.|..++. +.|....+|..+..+|...|.+.+|...-
T Consensus 355 IaFR~Aq~-------------------------------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 355 IAFRTAQM-------------------------------------------LAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHHHHHHh-------------------------------------------cchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 99999887 45678889999999999999999999999
Q ss_pred HHHHHhCcCcHHHHHHHH-HHHH-HcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCC
Q 001618 504 RLILFKYQDYVDAYLRLA-AIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 581 (1043)
Q Consensus 504 ~~~l~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 581 (1043)
+.++...|.++.++..+| .++. .-.--++|..++++++.+.|....+-..++.++...|.+..++..+++.+...+
T Consensus 392 n~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-- 469 (564)
T KOG1174|consen 392 NWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-- 469 (564)
T ss_pred HHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--
Confidence 999999999999988886 4443 233447799999999999999999999999999999999999999999988766
Q ss_pred ChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHh
Q 001618 582 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 642 (1043)
Q Consensus 582 ~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~ 642 (1043)
|...+..||.+ +... +.+.+|+..|..++.++|++..+.-++-.+--.
T Consensus 470 D~~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 470 DVNLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred ccHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 56667779998 8777 889999999999999999998777766544433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-14 Score=156.20 Aligned_cols=606 Identities=14% Similarity=0.112 Sum_probs=399.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
+..|..--..|++++..-...|..|+.....+..+|+...-...|+++|..-|- +..+|-.........+-..-++..
T Consensus 81 ~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 81 DPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 345667777788887766677889999999999999999999999999988773 345565555566677778899999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD-------PENVEALVALAVMDLQANEAAGIRKGMEKM 212 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 212 (1043)
|++-|+..|... -.....+...++.++|.+.+...+..+ +.+...|..+..+..+.-+...--..-..+
T Consensus 161 yrRYLk~~P~~~----eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLKVAPEAR----EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHhcCHHHH----HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999999998873 234456778889999999998887542 345566777777666654422222233455
Q ss_pred HHHHHhCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH--HHHh
Q 001618 213 QRAFEIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKE 289 (1043)
Q Consensus 213 ~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--a~~~ 289 (1043)
+..+...++. ...|..||..|.+.|.++.|..+|+.++...-...+...++-. | -.|++..-.+.- +...
T Consensus 237 R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~----Y---a~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 237 RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDA----Y---AQFEESCVAAKMELADEE 309 (835)
T ss_pred HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHH----H---HHHHHHHHHHHHhhhhhc
Confidence 6666666654 4678888999999999999999988888654222221111111 1 112221111111 1101
Q ss_pred cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----
Q 001618 290 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR----- 363 (1043)
Q Consensus 290 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~----- 363 (1043)
..+.......-..++..-.-.+....-+ =.-++..+|+++.-|.....++ .|+..+-+..|..++. .+|.
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs 385 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLL--NSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGS 385 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHH--HHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCC
Confidence 1111122222222222222111111111 1224567888888888776554 5788899999999876 4443
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccc
Q 001618 364 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 442 (1043)
Q Consensus 364 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 442 (1043)
...+|..++.+| ..|+.+.|...|+++....-. ....-..+|...|..-....+++.|+.+.+.+........
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----- 459 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----- 459 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----
Confidence 357899999999 999999999999998865211 1111267888889899999999999999999987532100
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 001618 443 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 522 (1043)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 522 (1043)
+.+|....... ..-.....+|..++.+....|-++.....|.+++.+---.+....+.|.
T Consensus 460 -----------------~~~yd~~~pvQ---~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 460 -----------------LEYYDNSEPVQ---ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred -----------------hhhhcCCCcHH---HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00110000000 0011356678888899999999999999999999988777888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHHc--CCChHHHHHHHHHhhh---ccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHH
Q 001618 523 IAKARNNLQLSIELVNEALKVN--GKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597 (1043)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~ 597 (1043)
.+....-++++.+.|++.+.++ |.-.++|..+-.-..+ --+.+.|...|+++++..|+...-.++. . |...
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyL-l---YA~l 595 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYL-L---YAKL 595 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH-H---HHHH
Confidence 8888888999999999998887 4555666654433332 2358899999999999877533322221 1 2222
Q ss_pred HhhcccChhHHhhhHHHHHHHHHHHHccC-cccHHHHHHhHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhH
Q 001618 598 LRNEKRAPKLEATHLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 675 (1043)
Q Consensus 598 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 675 (1043)
+.+-|-...|+.+|+++-..- +.+...++++-+.-+ ..=-...-..+|+++++..|++ ......+..
T Consensus 596 --------EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrF 664 (835)
T KOG2047|consen 596 --------EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRF 664 (835)
T ss_pred --------HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHH
Confidence 112278888999999876543 334443333321111 1223455678999999998854 344566677
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHH
Q 001618 676 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD 723 (1043)
Q Consensus 676 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~ 723 (1043)
+..-...|..+.|...|.-+.+..+...++..|..--..-.+.|+-+.
T Consensus 665 AdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 888889999999999999988887555568888777777778888443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-18 Score=169.09 Aligned_cols=250 Identities=16% Similarity=0.127 Sum_probs=229.2
Q ss_pred hHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 480 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
......+|.||..+|.+.+|.+.++..+...|. ++++..|+.+|....++..|+..+...+...|.+...+..++.++.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 344557999999999999999999999998876 8999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHH
Q 001618 560 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 639 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~ 639 (1043)
.+++++.|.++|+.+++..+. +..+...++.- ||.. ++.+-|+.+|+++|++.-.++..++++|.|
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~-yfY~------------~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVG-YFYD------------NNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeec-cccC------------CChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 999999999999999998776 55566666666 8887 999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhh
Q 001618 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 719 (1043)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g 719 (1043)
+.-.++++-++..|++++....++. .-.++|+|+|++....|++..|...|+-|+.. ++++...+.+||..-.+.|
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcC
Confidence 9999999999999999998864332 45799999999999999999999999999987 6677999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 720 QWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 720 ~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
+...|..++..|-.+.|.-....||++++
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred chHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999998888998875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-16 Score=181.38 Aligned_cols=305 Identities=13% Similarity=0.050 Sum_probs=244.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
.....|.+.+..|+++.|.+.+.++....|.....++..|.++...|+++.|..+|.++.+..|+....+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 34667889999999999999999999999988889999999999999999999999999999999844567777999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCCHH
Q 001618 165 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHF 240 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~ 240 (1043)
.|+++.|...++.+++..|+++.++..++.++...|+ ++.++..+.+..+..+.++.... .....+...+..+
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 99999999999987554443322 2222223444444
Q ss_pred HHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhh--HHHHHHHHHHcCCHHHHH
Q 001618 241 LVEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YYGLGQVQLKLGDFRSAL 317 (1043)
Q Consensus 241 ~A~~~~~~~l~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~ 317 (1043)
.+...+..+....+ ..+.++..+..++..+...|++++|...+.++++.. |+.... ...........++...++
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHH
Confidence 44556665554332 223577889999999999999999999999999843 333321 122333344567888999
Q ss_pred HHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001618 318 TNFEKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 392 (1043)
Q Consensus 318 ~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 392 (1043)
..+++.++..|+++ .++..+|.++++.|++++|..+|+ .++...|+... +..++.++ ..|+.++|..++++++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 888899999999999999999999 57777787665 55889988 99999999999998876
Q ss_pred HHHh
Q 001618 393 LLKK 396 (1043)
Q Consensus 393 ~~~~ 396 (1043)
..-.
T Consensus 399 ~~~~ 402 (409)
T TIGR00540 399 LMLA 402 (409)
T ss_pred HHhc
Confidence 6433
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-14 Score=150.62 Aligned_cols=593 Identities=11% Similarity=0.118 Sum_probs=412.9
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHH--Hc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLL--AK------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~--~~------g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
+-..+|+++++.-|.+...|+..-..-. -. ..|..--.+|++++-.-.+.+..|+.....++.+|+...-..
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 4577899999999999999987542211 11 236666778888888777788999999999999999999999
Q ss_pred HHHHHHHhCCCC-hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 139 FYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 139 ~~~~~l~~~p~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
.|.++|..-|-. ...+|-.........|-++-++..|++.|+++|...+-++ ..+...++ .++|.+.+...+.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi---e~L~~~d~---~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI---EYLAKSDR---LDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---HHHHhccc---hHHHHHHHHHhcC
Confidence 999999988754 1334544555566778888999999999999998754433 33444555 7888888877765
Q ss_pred hC-------CCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 218 IY-------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 218 ~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
.+ |.+...|..+..+..+.-+.-. ...++...+... .......|..||..|.+.|.+++|..+|++++
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 43 6677888888887776655433 334444444332 12335678999999999999999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--H--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001618 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YP-DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362 (1043)
Q Consensus 288 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 362 (1043)
...-...++..++...+.. ++..-.+.--+. . ++ +...+-..++..-.-+.....-+ -.-++..+|
T Consensus 276 ~~v~tvrDFt~ifd~Ya~F-------EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~ 346 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQF-------EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL--NSVLLRQNP 346 (835)
T ss_pred HhheehhhHHHHHHHHHHH-------HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH--HHHHHhcCC
Confidence 7544444444433322221 111110000000 0 11 11222222332222222211111 112456789
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhccc
Q 001618 363 RDAQAFIDLGELLISSDTGAALDAFKTARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441 (1043)
Q Consensus 363 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 441 (1043)
+++..|.....++ .|+..+-+..|..++... |......+..++..+|.+|...|+.+.|...|+++.+..-
T Consensus 347 ~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y------- 418 (835)
T KOG2047|consen 347 HNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY------- 418 (835)
T ss_pred ccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-------
Confidence 9999998877776 566777888888877653 3333344468899999999999999999999999987421
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC---------
Q 001618 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--------- 512 (1043)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------- 512 (1043)
..-.+...+|...|..-....+++.|..+.+.+...-..
T Consensus 419 --------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 419 --------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 011235788999999999999999999999988752211
Q ss_pred ---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCCh
Q 001618 513 ---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 583 (1043)
Q Consensus 513 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 583 (1043)
....|..++......|-++.....|++.+.+---.|.+..++|.++....-++++.+.|++.+.+.+.+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 24567777888888899999999999999999999999999999999999999999999999998877666
Q ss_pred HHHHHhhhHHHHHHH--hhcccChhHHhhhHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHH
Q 001618 584 YATLSLGNWNYFAAL--RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 659 (1043)
Q Consensus 584 ~~~~~lg~~~y~~~~--~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 659 (1043)
+-+ .+. |+... +... ...+.|..+|+++|...|. .-..+...+.+-.+-|....|+.+|+++...
T Consensus 547 ~di---W~t-YLtkfi~rygg-------~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 547 YDI---WNT-YLTKFIKRYGG-------TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHH---HHH-HHHHHHHHhcC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 532 222 33221 1111 5689999999999998885 2234455566666779999999999998776
Q ss_pred hcCCCCCCchhHHHhHHHHHHHc-----cCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 660 ASGSVFVQMPDVWINLAHVYFAQ-----GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 660 ~p~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
.+ ..-.+.+-++|... | ...-...|++|+...|+..-...-...+..-...|..+.|..+|...-++
T Consensus 616 v~-------~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 616 VK-------EAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred CC-------HHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 53 23333343444331 2 33456789999998665554566667778888899999999999888777
Q ss_pred C
Q 001618 735 A 735 (1043)
Q Consensus 735 ~ 735 (1043)
.
T Consensus 688 ~ 688 (835)
T KOG2047|consen 688 C 688 (835)
T ss_pred C
Confidence 4
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=193.10 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=120.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
..++.+++..|++++|+.++.+.+... .+|.++..|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 356999999999999999997665421 146788889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHH
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 566 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 566 (1043)
|.+....++++.|+..|++++..++..+..+..++.+ ...+++++|+.++.++++..+ ++..+..+..++...++++.
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999988888888888 789999999999999988764 56777788888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCC
Q 001618 567 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 645 (1043)
Q Consensus 567 A~~~~~~~l~~~~-~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~ 645 (1043)
+...+.++....+ ..+...+..+|.+ +... |+.++|+.+|++++..+|+|..+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776432 3467788888988 8888 999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHH
Q 001618 646 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 725 (1043)
Q Consensus 646 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~ 725 (1043)
++++..++.......| .++.++..+|.+|...|++++|+.+|+++++. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 67889999999999999999999999999998 6788999999999999999999999
Q ss_pred HHHHHHHHh
Q 001618 726 KSLLRAIHL 734 (1043)
Q Consensus 726 ~~~~ka~~~ 734 (1043)
.++.+++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999888653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-15 Score=149.51 Aligned_cols=449 Identities=14% Similarity=0.116 Sum_probs=244.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 170 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~ 170 (1043)
-++...+|.-|+.+++..+..+.... ..-+.+|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34556667777777766664443322 444556677777777777777776655532 2235566667777777777776
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 171 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 171 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
|...-.+ .|+++-....|-.+..+.++ -++-..+...+-
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklnd-------------------------------------Ek~~~~fh~~Lq 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLND-------------------------------------EKRILTFHSSLQ 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCc-------------------------------------HHHHHHHHHHHh
Confidence 6655544 24444333333333333333 222222111111
Q ss_pred hhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q 001618 251 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330 (1043)
Q Consensus 251 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 330 (1043)
+..+-...++.+++..-.|.+|+.+|.+.+. .++.....-..++.+|+++.-|+-+.+++.-.+...|++
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1113445566666666677777777777776 566666666677778888887877777777777777877
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 408 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 408 (1043)
+-+....+...++.=+-..|..-...+... +...+.+-..+-.-+ .-.+-+.|+..+-..+.. -|++..+
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--------IPEARlN 290 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--------IPEARLN 290 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--------ChHhhhh
Confidence 777777776666654433444443333321 111121111111111 122334555544444333 2456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHH
Q 001618 409 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 488 (1043)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 488 (1043)
+...|.++++..+|..+.+. ..|..+.-+...|.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd----------------------------------------------l~PttP~EyilKgv 324 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD----------------------------------------------LDPTTPYEYILKGV 324 (557)
T ss_pred heeeecccccHHHHHHHHhh----------------------------------------------cCCCChHHHHHHHH
Confidence 77777777777777776644 34556666666666
Q ss_pred HHHhcCChHHHHHHHHHHH---Hh------CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 489 LLEQIHDTVAASVLYRLIL---FK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~l---~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
++...|+--...+.++-+- .+ .-+.+.....++.+++...++++.+.+++..-...-++....++++..++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 6666665433333332221 11 11223334445555555666777777777666666666667777777777
Q ss_pred hccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHH-HHHHhHH
Q 001618 560 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY-AANGAGV 638 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~-a~~~la~ 638 (1043)
..|++.+|.+.|-++....-.++..-...|+.+ |... +.+.-|..+|-+. ..|.... .+..++.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArC-yi~n------------kkP~lAW~~~lk~--~t~~e~fsLLqlIAn 469 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARC-YIRN------------KKPQLAWDMMLKT--NTPSERFSLLQLIAN 469 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH-HHhc------------CCchHHHHHHHhc--CCchhHHHHHHHHHH
Confidence 777777777777655432212222222233444 5555 5555555554332 1233222 3334455
Q ss_pred HHHhcCCchHHHHHHHHHHHHhc
Q 001618 639 VLAEKGQFDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 639 ~~~~~g~~~~A~~~~~~~~~~~p 661 (1043)
.+...+.+=-|...|..+-.+.|
T Consensus 470 ~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 470 DCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHHHHHHHhhhHHHccCC
Confidence 55566665555555555555554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-15 Score=151.47 Aligned_cols=452 Identities=15% Similarity=0.148 Sum_probs=279.9
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHH
Q 001618 127 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 206 (1043)
Q Consensus 127 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~ 206 (1043)
+....+|..|+.+++-.+..+......+...+|.|++.+|+|++|...|.-+...+.-+.+.++.|+.++.-.|. |.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HH
Confidence 456678888888888777665544345667788888888888888888877766544455555556555555554 44
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 207 KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 286 (1043)
Q Consensus 207 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 286 (1043)
+|..... ++ |..+.....+-.+-++.++-.+-..+....
T Consensus 109 eA~~~~~----------------------------------ka-------~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 109 EAKSIAE----------------------------------KA-------PKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred HHHHHHh----------------------------------hC-------CCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4444333 22 222233333344445566655544443333
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001618 287 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366 (1043)
Q Consensus 287 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 366 (1043)
. +...-.+.++.+.+..-.|++||.+|.+++..+|+.......++.||+++.-++-+.+++.-.+...|+.+.
T Consensus 148 q-------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 148 Q-------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred h-------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 2 222457788999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhccccc
Q 001618 367 AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 443 (1043)
Q Consensus 367 ~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 443 (1043)
+....+... ..|+..++ -..... .+. +.. |..+..+++.-+-
T Consensus 221 A~NLkacn~fRl~ngr~ae~--E~k~la---dN~-~~~-----------------~~f~~~l~rHNLV------------ 265 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAED--EKKELA---DNI-DQE-----------------YPFIEYLCRHNLV------------ 265 (557)
T ss_pred HHHHHHHHHhhhhccchhHH--HHHHHH---hcc-ccc-----------------chhHHHHHHcCeE------------
Confidence 877666544 23332221 111111 110 000 1111111111000
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 001618 444 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 523 (1043)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 523 (1043)
--.+-+.|++++-.++..- +++..+++..
T Consensus 266 ------------------------------------------------vFrngEgALqVLP~L~~~I---PEARlNL~iY 294 (557)
T KOG3785|consen 266 ------------------------------------------------VFRNGEGALQVLPSLMKHI---PEARLNLIIY 294 (557)
T ss_pred ------------------------------------------------EEeCCccHHHhchHHHhhC---hHhhhhheee
Confidence 0011122333333333222 2344444444
Q ss_pred HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccch-------HHHHHHHHHhhhcCCC-CChHHHHHhhhHHHH
Q 001618 524 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-------VKAKETFRAASDATDG-KDSYATLSLGNWNYF 595 (1043)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~~l~~~~~-~~~~~~~~lg~~~y~ 595 (1043)
|+.+++..+|+.+++. ++|..|.-+...|.+....|+- .-|...|.-+=..... ......-+++.. +|
T Consensus 295 yL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fF 370 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FF 370 (557)
T ss_pred ecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HH
Confidence 4455555555444332 3455555444444444444432 2222223222111111 122233345555 66
Q ss_pred HHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhH
Q 001618 596 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 675 (1043)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l 675 (1043)
.. .+++..+.++..+-....+|....++++++.+..|++.+|.++|-++.... ..+.......|
T Consensus 371 L~------------~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~----ikn~~~Y~s~L 434 (557)
T KOG3785|consen 371 LS------------FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPE----IKNKILYKSML 434 (557)
T ss_pred HH------------HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChh----hhhhHHHHHHH
Confidence 66 789999999988888888888888999999999999999999998875432 11334445577
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 676 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 676 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
+.||...|++..|..+|-+ .........++..++..+|+.+.+--|.+.|..+-.++|+.
T Consensus 435 ArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 9999999999999998643 32112226778888999999999999999999888888854
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-19 Score=191.06 Aligned_cols=262 Identities=24% Similarity=0.307 Sum_probs=98.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+.+.+++++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666665444333 344 45566666666666666666666666666666666666555555 444
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 279 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 279 (1043)
++ +.+|+.++.++++..+ ++..+..++.++...++++++..++..+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45 6666666666665443 34455556666667777777777776665422 2245566777777888888888888
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 280 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 280 ~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
+..|++++. ..|++..+...++.+++..|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 888888877 55666677777777787888888777777777777677777777788888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001618 360 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 393 (1043)
Q Consensus 360 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 393 (1043)
.+|+++..+..++.++ ..|+.++|..++.++...
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888 778888887777766543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-17 Score=189.27 Aligned_cols=251 Identities=12% Similarity=-0.009 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCH
Q 001618 98 EVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 98 ~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~ 168 (1043)
.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCH
Confidence 456677777777777777776666666665533 23567777777777777776 45566677777777777
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001618 169 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 248 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (1043)
++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.+
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777777777777777777777766 77777777777777777666555555556666777777777766
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001618 249 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 328 (1043)
Q Consensus 249 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 328 (1043)
++... .|..+.++..+|.++...|++++|...+.++.. ..+....+...++..|...|+ .|...++.+++..-
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 66432 244556677777777777777777777776654 445555666666667666663 66666666555432
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 329 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
....-...+..+|.-.|+.+.+... +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222223366666777777666665 555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=166.04 Aligned_cols=275 Identities=17% Similarity=0.191 Sum_probs=242.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~---p~-------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~ 161 (1043)
+++...+...|-..+..++... |. +-..-..+|.||++.|-+.+|.+.++..+...|.. +.+..++.+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHHH
Confidence 4555677777776666655432 21 11223678999999999999999999999998875 678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++..|+..++.+-
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHH
Confidence 9999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
|+.+|.++++..- ..++.+.++|.+++..++++-++..|++++.....+.....+|+++|.+....|++..|..+|+
T Consensus 343 AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 343 ALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred HHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 9999999998763 4568999999999999999999999999997665566778899999999999999999999999
Q ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 374 (1043)
-++..++++.+++.+||.+-.+.|+.+.|..++..+....|...+..++++.+
T Consensus 420 laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 420 LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999999999999999999999999999887777766543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=186.67 Aligned_cols=269 Identities=15% Similarity=0.071 Sum_probs=214.8
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC---------CHHHHHHHHHH
Q 001618 112 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 177 (1043)
Q Consensus 112 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~ 177 (1043)
..|.+..+ ++..|..++.. +.+.+|+.+|++++..+|++ ..++..+|.|+..++ ++.+|...+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555443 34455444333 45789999999999999999 677888998877543 37899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 001618 178 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 257 (1043)
Q Consensus 178 al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 257 (1043)
+++++|++..++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999765 5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Q 001618 258 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337 (1043)
Q Consensus 258 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 337 (1043)
..+..++.++.+++..|++++|+..+.+++.. .+|....++..+|.++...|++++|...+.++....|....+...+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 55556666777788899999999999998863 2466777888999999999999999999999988888888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001618 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 392 (1043)
Q Consensus 338 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 392 (1043)
+..|...|+ .|...++++++.......-...+..++ ..|+.+.+..+ +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 999998884 777777776664322222222266666 67777776655 55443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-15 Score=169.61 Aligned_cols=296 Identities=13% Similarity=0.058 Sum_probs=219.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~ 165 (1043)
.+..|...+..|+|+.|.+.+.......+.....++..+.+....|+++.|..+|.++.+.+|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988887665543323344445666699999999999999999999998445555668999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH--------HHHHHHhcC
Q 001618 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 237 (1043)
Q Consensus 166 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------la~~~~~~g 237 (1043)
|+++.|...++++++.+|+++.++..++.+|...|+ +++++..+.++.+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 999999999988877665443221 111111122
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 001618 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 317 (1043)
Q Consensus 238 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 317 (1043)
+.+...++.... +...+.++.+...++..+...|+.++|...+.++++ ..+ ....... ......+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l--~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLL--IPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHH--HhhccCCChHHHH
Confidence 222222222222 122356678888888888888888888888888875 222 2222222 2223458888888
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001618 318 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 318 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 394 (1043)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++.. +..++.++ ..|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888888888888888888888888888888888888888887544 55688888 8888888888888777653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-14 Score=152.86 Aligned_cols=446 Identities=14% Similarity=0.070 Sum_probs=280.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.++.|++|++..++++...|+++.+......++.+.++|++|+.+.+.-......+. ..+..|.|.|+.+..++|+.++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHHHH
Confidence 467899999999999999999999999999999999999999965554333222222 2379999999999999999999
Q ss_pred HHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001618 141 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 141 ~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 220 (1043)
+ ..++.+ ..+....|.+++++|+|++|...|+..++.+.++.+.......+..... .... +.+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhccCCC
Confidence 8 334444 4567789999999999999999999999887776665544443322211 1111 344444555
Q ss_pred C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCC-------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 221 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPT-------KSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 221 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
. ....+++.+.++...|+|.+|++++..++.. ...+.. ...+...++.++..+|+..+|..+|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 5678999999999999999999999999432 111111 12356788999999999999999999999
Q ss_pred HhcCCCC-CChhhHHHHHHHHHHcCCHH-HHHHHHHHHHHHCC----------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 288 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYP----------DNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 288 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
...+.+. ....+.+++..+-....-++ .++..++......+ .-..++.+.+.+.+..+.-+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8543222 22222333322221111111 12222222211111 112455666666666677666666655
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchh
Q 001618 356 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 434 (1043)
Q Consensus 356 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 434 (1043)
..-...|............. ....+..+..++.......|. ....+...++.+.+.+|++..|+..+...+. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~--~ 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLE--S 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h
Confidence 54444444332222222222 222456666665544433222 1356888889999999999999999985542 1
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh-----
Q 001618 435 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----- 509 (1043)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 509 (1043)
|...+. .....+.+...+..++...++...|..++..++..
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111000 11123344445555666767766676666666542
Q ss_pred --CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 001618 510 --YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 558 (1043)
Q Consensus 510 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 558 (1043)
.+.....+..++..-...|+.++|...++++++.+|++..++..+...|
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAY 502 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 1222333444455555557777777777777777777766666555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-15 Score=167.59 Aligned_cols=291 Identities=13% Similarity=0.093 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
.+|+|..|.+.+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 357888999999999999998888889999999999999999999999999999875 5667789999999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH----HHHHHHHHhhhHHhHHHHHHHHHHH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRA 215 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~la~~~~~~~~~~~~~~A~~~~~~a 215 (1043)
++.+++..|++ +.++..++.++...|+++.|...+.+.++..+.+...+. ....-....+. ..++...+..+
T Consensus 176 l~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~ 251 (409)
T TIGR00540 176 VDKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNW 251 (409)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHH
Confidence 99999999999 578899999999999999999999999987554443322 11111122222 45556678888
Q ss_pred HHhCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 001618 216 FEIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 291 (1043)
Q Consensus 216 l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 291 (1043)
....| +++.++..++..+...|+++.|...++.+++..+.++.... ...........++...++..++++++
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk--- 327 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK--- 327 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---
Confidence 88777 58999999999999999999999999999986543321110 13333344556889999999999998
Q ss_pred CCCCCh--hhHHHHHHHHHHcCCHHHHHHHHH--HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 292 KPHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 292 ~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
..|++. .....+|.+++..|++++|..+|+ .+++..|+... +..+|.++.+.|+.++|..+|++++..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666 778899999999999999999999 57778887655 559999999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=171.46 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=189.3
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
+..|..+++.|++.+|.-+|+.++..+|.+.++|..||.+....++ -..|+..+.++++++|+|..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4567777777777777777777777777777777777777777666 6667777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 236 TGQHFLVEQLTETALAVTNHGPTKS----HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 236 ~g~~~~A~~~~~~~l~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
.|.-..|.+++..-+.......... .-.+.....+.....+..-..+|..+....+. ...+.++..||.+|...|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcch
Confidence 7777777777776654321000000 00000000001111123334455555543321 256678999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001618 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 390 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 390 (1043)
+|+.|+.+|+.+|...|++...|..||..+....+..+|+..|.+++++.|..+.++++||..+ ..|.|.+|+.+|-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhcCCCC-----cHHHHHHHHHHHHHcCCHHHHHH
Q 001618 391 RTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQ 424 (1043)
Q Consensus 391 ~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 424 (1043)
+.+.+...... +-.+|..|-.++...++.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99887732111 13566666666666776664433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-15 Score=165.34 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=234.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHH
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQ 198 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~ 198 (1043)
.+..|.+.+..|+|+.|.+.+.+.....+ .+...+...+.+....|+++.|..+|.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34566777778999999988777655433 334445555666699999999999999999999998544 4455899999
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH-----HHHHHHHHHHHc
Q 001618 199 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 273 (1043)
Q Consensus 199 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-----~~~~la~~~~~~ 273 (1043)
.|+ ++.|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999976544332211 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
.+-+....++...-. ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..+++++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 233333333333322 34567788999999999999999999999999994 4456555555544 44999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 354 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 354 ~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
+++.++..|+++..++.+|.++ ..+++.+|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987544 566778999999999999999999999874
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=166.07 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=190.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
+..|+.+++.|++.+|.-.|+.++. .+|....+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 3467888888888888888888887 467888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHH-------Hhh
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-------LEL 559 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-------~~~ 559 (1043)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|..++.+-+...|........--. -..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 8888888888888888888888888888888888888888888888888888888877654322111000 011
Q ss_pred hccchHHHHHHHHHhhhcCCC-CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHH
Q 001618 560 KNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 638 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~ 638 (1043)
....+..-.+.|-.+....+. .++.....||.+ |+.. +.|++|+.+|+.+|...|+|...|+.||-
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 112244455555555554442 567777778877 7777 88888888888888888888888888888
Q ss_pred HHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC---C-----HHHHHH
Q 001618 639 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---D-----AQILLY 710 (1043)
Q Consensus 639 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~-----~~~l~~ 710 (1043)
.++...+..+|+..|++++++.| ....+++|||.++..+|-|.+|+.+|-.||...+.+. . -.+|..
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 88888888888888888888887 6777888888888888888888888888887754421 1 246666
Q ss_pred HHHHHHhhhcHHHH
Q 001618 711 LARTHYEAEQWQDC 724 (1043)
Q Consensus 711 la~~~~~~g~~~~A 724 (1043)
|-.++...++.+-+
T Consensus 548 LR~als~~~~~D~l 561 (579)
T KOG1125|consen 548 LRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHcCCchHH
Confidence 66666666665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-15 Score=160.32 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 63 EHFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
...+.++..+.+++...| ..+..|+.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456678888888886443 2356788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001618 139 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218 (1043)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 218 (1043)
.|++++.++|++ ..+++.+|.+++..|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.+....
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 66788899999999999999999999999999887422211 12233344 78888888766544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-15 Score=159.88 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHH
Q 001618 97 GEVEQASSAFKIVLEADR---D-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 172 (1043)
Q Consensus 97 g~~~~A~~~~~~~l~~~p---~-~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~ 172 (1043)
+..+.++..+.+++...| . .+..++.+|.++...|++.+|+..|++++..+|++ +.+++.+|.++...|+++.|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 467888888988986433 3 36779999999999999999999999999999998 778999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 173 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 173 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
..|.++++++|++..++..+|.++...|+ +++|+..|.+++..+|+++.... ...+....+++++|+..+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999888 99999999999999998873211 1122233445555555554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-15 Score=140.15 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=168.6
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
..+++.+|..|+..|++..|...++++|+.+|++..+|..++.+|...|+ .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45688888899999999999999999999999999999999999999888 888889999999999888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
.++.+|.+++|...|+.++..+ ..+..+.++-++|.|..+.|+++.|..+|++++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888887653 2345567788888888888888888888888887 56677777788888888888
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001618 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 367 (1043)
+|-.|..+++......+-..+.+.....+-...|+...+-.+=.++....|.....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888887777766677777777777777888877777777777777766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-15 Score=140.42 Aligned_cols=210 Identities=23% Similarity=0.256 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 376 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~ 376 (1043)
.+...||.-|+..|++..|...++++++.+|++..+|..++.+|...|..+.|.+.|++++.++|++.+++.+.|..+ .
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 457788999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH
Q 001618 377 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456 (1043)
Q Consensus 377 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1043)
+|.+++|...|.+++.. |. ...++.++.|+|.|..+.|+++.|..+|++++.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~------------------------- 167 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PA--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE------------------------- 167 (250)
T ss_pred CCChHHHHHHHHHHHhC-CC--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH-------------------------
Confidence 89999999999888763 22 233468889999999999999999999999988
Q ss_pred hhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHH
Q 001618 457 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
.+|..+.....++..+...|++..|..+++......+-..+.+.....+....|+-..+..+
T Consensus 168 ------------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 168 ------------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred ------------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 56788888899999999999999999999988888777788888888888889999998888
Q ss_pred HHHHHHHcCCChHHHHH
Q 001618 537 VNEALKVNGKYPNALSM 553 (1043)
Q Consensus 537 ~~~al~~~p~~~~~~~~ 553 (1043)
-.++...+|..++.-..
T Consensus 230 ~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 230 QAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHhCCCcHHHHhH
Confidence 88888888988765433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.6e-14 Score=155.45 Aligned_cols=254 Identities=23% Similarity=0.280 Sum_probs=189.7
Q ss_pred CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Q 001618 254 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-- 326 (1043)
Q Consensus 254 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-- 326 (1043)
...|....+...++..|...|+|+.|+..+..++..+. ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34455666667778888888888888888887776421 12333344556888899999999999999988875
Q ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001618 327 ------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTAR 391 (1043)
Q Consensus 327 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 391 (1043)
+|....++.+|+.+|...|++.+|..++++++.+. |.-...+.+++.++ ..+.+++|..++++++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33445788889999999999999999998888753 33456677788888 8999999999999999
Q ss_pred HHHHhcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc
Q 001618 392 TLLKKAGEEV---PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468 (1043)
Q Consensus 392 ~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1043)
++........ .+.+..++|.+|+.+|++.+|..+|++++.......
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~------------------------------- 401 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL------------------------------- 401 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-------------------------------
Confidence 9887543332 268899999999999999999999999998421000
Q ss_pred CCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh-------CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 001618 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541 (1043)
Q Consensus 469 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (1043)
....+.....+.++|..|...+.+.+|..+|..+..+ +|+....+.+|+.+|..+|+++.|+++.+.++
T Consensus 402 ----~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 402 ----GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ----cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0023445678889999999999999999988887653 34445667777777777777777777777665
Q ss_pred H
Q 001618 542 K 542 (1043)
Q Consensus 542 ~ 542 (1043)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-15 Score=151.08 Aligned_cols=313 Identities=16% Similarity=0.147 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
.-....+..++...+|.+|+..|..++...|++ ...|...+.+++.+|+++.|.-..+..+.++|+........+.++.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 345666677777777777777777777777777 5667777777777777777777777777777777766666666666
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHH
Q 001618 198 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277 (1043)
Q Consensus 198 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 277 (1043)
..++ ..+|...|+ +.. ++ ...
T Consensus 129 a~~~---~i~A~~~~~--------~~~-------------------------------------~~-----------~~a 149 (486)
T KOG0550|consen 129 ALSD---LIEAEEKLK--------SKQ-------------------------------------AY-----------KAA 149 (486)
T ss_pred hhHH---HHHHHHHhh--------hhh-------------------------------------hh-----------HHh
Confidence 6655 444444433 000 00 112
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 357 (1043)
Q Consensus 278 ~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 357 (1043)
.|+..++..+......|....+.+.-+.++...|++.+|+..--.++++++.+.++++..|.+++..++.+.|+..|+++
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence 23333333332222234445566777899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhh
Q 001618 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 437 (1043)
Q Consensus 358 l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 437 (1043)
+.++|+...+-. .+.... ....+..-|.-.++.|++..|.++|..+|.+.|.
T Consensus 230 l~ldpdh~~sk~----------------~~~~~k----------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-- 281 (486)
T KOG0550|consen 230 LRLDPDHQKSKS----------------ASMMPK----------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-- 281 (486)
T ss_pred hccChhhhhHHh----------------HhhhHH----------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--
Confidence 999997654321 111111 1344556688889999999999999999986441
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHH
Q 001618 438 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 517 (1043)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 517 (1043)
....++.+|.+++.+...+|+..+|+...+.++.++|.+..++
T Consensus 282 -------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 282 -------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred -------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 1234677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHH
Q 001618 518 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 556 (1043)
Q Consensus 518 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 556 (1043)
...|.++..++++++|++.|+++++...+ ......+..
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLRE 362 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence 99999999999999999999999998876 555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=153.81 Aligned_cols=275 Identities=19% Similarity=0.201 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
-+...|..|+..+..++...|.++..|..++..+...|+|++|....++.+...|..+......+.|+...++..+|...
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHHH---------------HhC---CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 140 YKRAL---------------QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 140 ~~~~l---------------~~~---p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
|+..- ..+ |.+ ..+.+..+.|+..+|+++.|...--..+++++.+.++++..|.++....+
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN 218 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc
Confidence 54211 111 222 34567788999999999999999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001618 202 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 281 (1043)
Q Consensus 202 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 281 (1043)
.+.++..|++++.++|....+-.. + ..+.....+...|.-.++.|+|..|.+
T Consensus 219 ---~~ka~~hf~qal~ldpdh~~sk~~----~---------------------~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 219 ---ADKAINHFQQALRLDPDHQKSKSA----S---------------------MMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred ---hHHHHHHHhhhhccChhhhhHHhH----h---------------------hhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 999999999999999987643221 0 012333567778888999999999999
Q ss_pred HHHHHHHhcCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 282 YYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 282 ~~~~a~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
.|..++..-|. ...++..|.+++.+...+|+..+|+..++.+++++|....++...|.++..++++++|++.|+++++.
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999974332 12335568889999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 001618 361 DPR 363 (1043)
Q Consensus 361 ~p~ 363 (1043)
..+
T Consensus 351 ~~s 353 (486)
T KOG0550|consen 351 EKD 353 (486)
T ss_pred ccc
Confidence 644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-13 Score=153.95 Aligned_cols=255 Identities=25% Similarity=0.229 Sum_probs=212.2
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--
Q 001618 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 290 (1043)
Q Consensus 218 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-- 290 (1043)
.+|.-..+...++..|...|+|+.|+.++..++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 457777888889999999999999999999999752 1234445556679999999999999999999999743
Q ss_pred ---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 291 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 291 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
..+|....++.+||.+|...|++.+|..++++++.+. |.-...+..++.++..++++++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3567777889999999999999999999999998863 23346788899999999999999999999987
Q ss_pred hC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 360 ID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFK 427 (1043)
Q Consensus 360 ~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~ 427 (1043)
+. |.-+..+.+||.+| ..|++.+|..+|++++.+......... ...++++|..|.+.+.+.+|..+|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 62 23467889999999 999999999999999999877644322 4678899999999999999999999
Q ss_pred HHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHH
Q 001618 428 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 507 (1043)
Q Consensus 428 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 507 (1043)
+++.+.. ... ...|.....+.+|+.+|..+|+++.|+++...++
T Consensus 434 ~~~~i~~---~~g---------------------------------~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMK---LCG---------------------------------PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHH---HhC---------------------------------CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9987421 000 0456788899999999999999999999999887
Q ss_pred H
Q 001618 508 F 508 (1043)
Q Consensus 508 ~ 508 (1043)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=152.15 Aligned_cols=177 Identities=21% Similarity=0.293 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~ 146 (1043)
+|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|.+++..
T Consensus 49 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 49 VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555543
Q ss_pred C--CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001618 147 H--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 224 (1043)
Q Consensus 147 ~--p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 224 (1043)
. |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.++...|+ +++|+..+++++...|.++.
T Consensus 129 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 129 PLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---YKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred cccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHH
Confidence 2 111 23344455555555555555555555555555555555555555555555 55555555555555444444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 001618 225 ALNYLANHFFFTGQHFLVEQLTE 247 (1043)
Q Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~ 247 (1043)
.+..++.++...|+.+.|..+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 205 SLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-14 Score=150.58 Aligned_cols=202 Identities=23% Similarity=0.280 Sum_probs=120.9
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..+.+++...|.+..++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666 666666666666666666655555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
++...|++++|...+..++.... .+.....+..+|.++...|++++|...|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 55555555555555555553211 123334555566666666666666666666665 33444455666666666666
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
++++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666665656666666666666666666666665554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-13 Score=154.13 Aligned_cols=449 Identities=14% Similarity=0.122 Sum_probs=242.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
.+.++....++...|++++|+..+......-++....+-.+|.+++++|++++|...|..++..+|++ ...+.++..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 34555566666677777777777766666666666666667777777777777777777777777766 44455555555
Q ss_pred HHcC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001618 163 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME-KMQRAFEIYPYCAMALNYLANHFFFT 236 (1043)
Q Consensus 163 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~ 236 (1043)
.... ....-...|+......|....+.. +...+. .|+ .+...+. ++...+.. ..|.+...+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3222 344445555555555554332211 111111 111 1322222 22222221 2233333333333211
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHH
Q 001618 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRS 315 (1043)
Q Consensus 237 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 315 (1043)
....-...++......... .+.+. ... .....+|. ...+++.+|+.|...|++++
T Consensus 157 ~K~~~i~~l~~~~~~~l~~-----------------~~~~~----~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLES-----------------NGSFS----NGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHHHHHHHHHHHHHHhhcc-----------------cCCCC----Ccc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 1111111111111110000 00000 000 00001111 13456778888888888888
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001618 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 394 (1043)
Q Consensus 316 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 394 (1043)
|+.++++++...|+.++.+...|.++-..|++.+|...++.+-.+++.+..+....+..+ ..|+.++|...+....+..
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 888888888888888888888888888888888888888888888888877777777777 8888888887665443221
Q ss_pred HhcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc
Q 001618 395 KKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468 (1043)
Q Consensus 395 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1043)
. +...+ .......|.+|.+.|++..|+..|..+.+... .+ ..-.+++...++....+..|-.+..
T Consensus 293 ~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~--~~-----~~DQfDFH~Yc~RK~t~r~Y~~~L~ 363 (517)
T PF12569_consen 293 V--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD--DF-----EEDQFDFHSYCLRKMTLRAYVDMLR 363 (517)
T ss_pred C--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HH-----hcccccHHHHHHhhccHHHHHHHHH
Confidence 1 00001 23445568889999999999999988876421 00 0111223333333222222222222
Q ss_pred CCCCCCCCCchhHHHHhHHHHHHhcCChHHH------------------HHHHHHHHH----------------------
Q 001618 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAA------------------SVLYRLILF---------------------- 508 (1043)
Q Consensus 469 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A------------------~~~~~~~l~---------------------- 508 (1043)
....+..+|....+.....++|..+.+.... ....++.-+
T Consensus 364 ~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~ 443 (517)
T PF12569_consen 364 WEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQ 443 (517)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhh
Confidence 2222333344444444444444432211100 011110000
Q ss_pred ----------hCcCcHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHh
Q 001618 509 ----------KYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574 (1043)
Q Consensus 509 ----------~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 574 (1043)
..+.+.+ -+|.-+... .-.++|..+++-++...|++..+|..--.+|++.|++--|++.+.++
T Consensus 444 ~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~kA 517 (517)
T PF12569_consen 444 NKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKKA 517 (517)
T ss_pred ccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHhC
Confidence 0000010 012222222 34677899999999999999999999999999999999888887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-13 Score=132.28 Aligned_cols=300 Identities=20% Similarity=0.246 Sum_probs=200.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hhHHHHhHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 161 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~----~~~~~~~lg~~ 161 (1043)
-|..|.-++...+.++|+..|-.+++.+|....+.+.+|.++.+.|..+.|+.+.+..+. .|+. ...+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 466788888999999999999999999999999999999999999999999999887654 4554 23467789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
|+..|-++.|...|........--..++..|..+|....+ +.+|+...++..++.+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~e--------------- 178 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRVE--------------- 178 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchhH---------------
Confidence 9999999999999998876544466788888899988888 9999999998888887654221
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
-+..+..++..+....+++.|+..+.++++ .+|..+.+-..+|.+....|+|+.|++.++
T Consensus 179 -----------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 179 -----------------IAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred -----------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 123444555555556666666666666665 455566666666666666666666666666
Q ss_pred HHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 322 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 322 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
.+++.+|.. +++.-.|..+|.++|+.++.+..+.++.+..+.. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt--- 314 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT--- 314 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc---
Confidence 666666654 3455566666666666666666666666655432 2333344433 333344444444333332222
Q ss_pred CCcHHHHHHHHHHH---HHcCCHHHHHHHHHHHHc
Q 001618 400 EVPIEVLNNIGVIH---FEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 400 ~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~ 431 (1043)
...++.+.... ..-|...+.+..+..++.
T Consensus 315 ---~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ---MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ---HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 23333333222 234455555555555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-13 Score=134.72 Aligned_cols=295 Identities=20% Similarity=0.182 Sum_probs=197.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 237 (1043)
.|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|. .+.|+.+.+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~----------------------- 94 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQT----------------------- 94 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHH-----------------------
Confidence 44445555555555555555555555555555555555555555 5555555443
Q ss_pred CHHHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 238 QHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 238 ~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
++..++.. .....+.+.||.-|...|-++.|..+|..... .+.....+.-.|..+|-...+|++|
T Consensus 95 -----------L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~d---e~efa~~AlqqLl~IYQ~treW~KA 160 (389)
T COG2956 95 -----------LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVD---EGEFAEGALQQLLNIYQATREWEKA 160 (389)
T ss_pred -----------HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhc---chhhhHHHHHHHHHHHHHhhHHHHH
Confidence 33322111 12234667777788888888888888877764 2333445677777888888888888
Q ss_pred HHHHHHHHHHCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001618 317 LTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 390 (1043)
Q Consensus 317 ~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 390 (1043)
|++.++..++.+.. ...+..++..+....+.+.|+..+.++++.+|..+.+-+.+|.+. ..|+++.|++.++.+
T Consensus 161 Id~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 161 IDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 88888888776653 356677777777778888888888888888888888888888888 888888888888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC
Q 001618 391 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 470 (1043)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1043)
++..+.. .++++..+..+|...|+..+.+.++.++....
T Consensus 241 ~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~------------------------------------- 279 (389)
T COG2956 241 LEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN------------------------------------- 279 (389)
T ss_pred HHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-------------------------------------
Confidence 7765543 46778888889999999999999988887631
Q ss_pred CCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc---CChhHHHHHHHHHH
Q 001618 471 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR---NNLQLSIELVNEAL 541 (1043)
Q Consensus 471 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al 541 (1043)
..+.+...++.+.....-.+.|..++.+-+..+|+-- ...++......- |...+.+..++.++
T Consensus 280 -------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 -------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2334455566666666677888888888888888743 333443333222 23444444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-12 Score=145.42 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=155.2
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~ 155 (1043)
+|+.+.++..+|.++...|+.+.|...+.++....|.+ ....+..+.++...|++++|+..+++++..+|.+. .++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHH
Confidence 78888999999999988999999888888888777654 45677788888999999999999999999999884 333
Q ss_pred HhHHHHHHHcCCHH----HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 156 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~----~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
.. +..+..+|.+. .+...+......+|....++..+|.++...|+ +.+|+..+++++.++|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 32 55555555443 34444433334566677777788888888888 888999999999988888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVK 288 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 288 (1043)
+++..|++++|+.++..++...+..+. ....+..++.++...|++++|+..|.+++.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888888765433222 234566788888888888888888888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-13 Score=145.25 Aligned_cols=222 Identities=13% Similarity=-0.035 Sum_probs=193.4
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
.+....++-.+-.++...+..++|+..+.+++.++|.+..+|...+.++..+| .+++++.++.+++..+|++..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34455566566666788899999999999999999999999999999999998 67999999999999999999999999
Q ss_pred HHHhhhccch--HHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHH
Q 001618 555 GDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 632 (1043)
Q Consensus 555 ~~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a 632 (1043)
++++...|.. ..++.++.+++...|. +..+|...+.+ +... |.+++|+.++.++++.+|.|..+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchhH
Confidence 9999888874 7889999999998876 88899999988 7777 89999999999999999999999
Q ss_pred HHHhHHHHHhc---CCc----hHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHH----ccCHHHHHHHHHHHHHHhcC
Q 001618 633 ANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYY 701 (1043)
Q Consensus 633 ~~~la~~~~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~ 701 (1043)
|+..+.++.+. |.+ +.++.+..+++...| ++..+|..++.++.. .++..+|+..+..++.. .
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~ 251 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--D 251 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--c
Confidence 99999998876 333 478888899999998 788999999999988 45667899999888775 5
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001618 702 NTDAQILLYLARTHYEA 718 (1043)
Q Consensus 702 ~~~~~~l~~la~~~~~~ 718 (1043)
++.+.++..|+.+|...
T Consensus 252 ~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 252 SNHVFALSDLLDLLCEG 268 (320)
T ss_pred CCcHHHHHHHHHHHHhh
Confidence 66688999999999863
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-13 Score=144.41 Aligned_cols=226 Identities=14% Similarity=0.003 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKR 142 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~ 142 (1043)
.|.+|..+|..++. ..+.+++|+..+.+++..+|.+..+|..++.++...| ++.+++.++.+
T Consensus 35 ~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~ 97 (320)
T PLN02789 35 EFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED 97 (320)
T ss_pred HHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 45566666665544 3467888999999999999999999999999999988 68999999999
Q ss_pred HHHhCCCChhHHHHhHHHHHHHcCCH--HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001618 143 ALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 143 ~l~~~p~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 220 (1043)
++..+|.+ ..+|...+.++..+|.. ..++.++.++++.+|.|..+|...+.++...|. +++++..+.++++.+|
T Consensus 98 ~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 98 VAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCC
Confidence 99999998 66788889888888874 678889999999999999999999999998888 9999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhH
Q 001618 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300 (1043)
Q Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 300 (1043)
.+..+|+..+.++...|... . .....+.++.+..+++. ..|.+..+|
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~---------------------------~---~~~~~e~el~y~~~aI~---~~P~N~SaW 220 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLG---------------------------G---LEAMRDSELKYTIDAIL---ANPRNESPW 220 (320)
T ss_pred CchhHHHHHHHHHHhccccc---------------------------c---ccccHHHHHHHHHHHHH---hCCCCcCHH
Confidence 99988888877655432100 0 00012345566656665 456666677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Q 001618 301 YGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 343 (1043)
Q Consensus 301 ~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 343 (1043)
+.++.++.. .+...+|+..+..++...|.++.++-.|+.+|..
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 777777666 3445667777777777777777777777777765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-12 Score=144.86 Aligned_cols=324 Identities=16% Similarity=0.140 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
.+++.....++...|++++|+.++..... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 45666777888889999999999877554 23456778
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHcCCCh---------
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKYP--------- 548 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~--------- 548 (1043)
+-..|.++..+|++++|...|..++..+|++...+..+..+..... +...-..+|.......|...
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 8888999999999999999999999999999888888887773332 45566777777776666432
Q ss_pred -----------------------HHHHHHHHHhhhccchHHHHHHHHHhhhc---C-----------CCCCh--HHHHHh
Q 001618 549 -----------------------NALSMLGDLELKNDDWVKAKETFRAASDA---T-----------DGKDS--YATLSL 589 (1043)
Q Consensus 549 -----------------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~-----------~~~~~--~~~~~l 589 (1043)
.+...+-.+|....+..-...++...+.. . ..+.. ++++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 23333333333333322222233322211 0 01122 344444
Q ss_pred hhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCch
Q 001618 590 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 669 (1043)
Q Consensus 590 g~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 669 (1043)
+.. |... |++++|+.++++++...|+.+..+...|.++.+.|++.+|...++.++.+++ .+-
T Consensus 201 Aqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DR 262 (517)
T PF12569_consen 201 AQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADR 262 (517)
T ss_pred HHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhH
Confidence 544 5454 9999999999999999999999999999999999999999999999999886 444
Q ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC-CC------HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCC--Ccc
Q 001618 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS--NYT 740 (1043)
Q Consensus 670 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~--~~~ 740 (1043)
-+-...+..+++.|+.++|...+....+...++ .+ .......|.+|++.|++..|++.|..+.+..-+ +..
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 555566888999999999999954443321101 11 223346789999999999999999888877553 233
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCCHHHHHHH---HHHHHHHHHHHHHHhhCC
Q 001618 741 LRFDAGVAMQKFSASTLQKTRRTADEVRST---VAELENAVRVFSHLSAAS 788 (1043)
Q Consensus 741 ~~~nla~~~~~~~~~~l~~~~~~~~~l~~a---~~~l~~a~~~~~~l~~~~ 788 (1043)
+-|+ .+|+.++..+..-.+-+..+.|... +.-...+++++..|.+..
T Consensus 343 fDFH-~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 343 FDFH-SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred ccHH-HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCc
Confidence 3334 3456777765544444333444332 556678899999998754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=147.22 Aligned_cols=307 Identities=15% Similarity=0.079 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 36 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 112 (1043)
Q Consensus 36 ~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 112 (1043)
+....+..++.+|...|... .|...+.++....|.+ ....+..+.++...|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567888888888887655 5566666666665544 456778899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001618 113 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188 (1043)
Q Consensus 113 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l----~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 188 (1043)
+|.+..++.. +..++..|++..+...+.+++ ..+|.. ...+..+|.++...|++++|...+++++.++|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999987775 666666555544444444444 334444 4556678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH-H
Q 001618 189 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-Y 263 (1043)
Q Consensus 189 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-~ 263 (1043)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+.+++.++......+..... .
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 9999999999999 9999999999999887443 345679999999999999999999986433211111111 0
Q ss_pred H-HHHHHHHHcCCHHHHHHH--H-HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------c
Q 001618 264 Y-NLARSYHSKGDYEKAGLY--Y-MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------N 330 (1043)
Q Consensus 264 ~-~la~~~~~~g~~~~A~~~--~-~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~ 330 (1043)
. .+...+...|....+..+ + .......+. +.........+.++...|+...|...+..+...... .
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 222233333432222222 1 111110001 112222234566666677777776666665442211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
..+....+.++...|+++.|+..+..++.
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555566666666666655554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-12 Score=126.73 Aligned_cols=423 Identities=16% Similarity=0.104 Sum_probs=272.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 171 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A 171 (1043)
.+....+|..|++++..-...+|.+...+..+|.||+...+|..|-.+|.+.-...|.. ...++..+..+++.+.+..|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHH
Confidence 34677889999999999999999999999999999999999999999999999999998 67788899999999999999
Q ss_pred HHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001618 172 RQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTET 248 (1043)
Q Consensus 172 ~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (1043)
+.+...+... |. .......-+.+....++ +..+..+++ .-| +.....+..|.+.++.|+|+.|.+-|+.
T Consensus 98 LrV~~~~~D~-~~L~~~~lqLqaAIkYse~D---l~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 98 LRVAFLLLDN-PALHSRVLQLQAAIKYSEGD---LPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHhccccc---CcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 9888766532 22 22333334444455555 444444443 334 4667788888888888999988888888
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 001618 249 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 327 (1043)
Q Consensus 249 ~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 327 (1043)
+++..... +..-++++.+++..|++..|+.+...++... ...|........-|.--...|+. +.....+
T Consensus 170 AlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~Sa---- 239 (459)
T KOG4340|consen 170 ALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQSA---- 239 (459)
T ss_pred HHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHHH----
Confidence 88766443 3677788888888888888888888777532 12333211100000000011111 1111111
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHH
Q 001618 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEV 405 (1043)
Q Consensus 328 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 405 (1043)
-.+++...+.++++.++++.|.+.+..+--.. .-++..+.+++..-..+++.....-+.-.+.+. +.+.++
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-----PfP~ET 312 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-----PFPPET 312 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-----CCChHH
Confidence 24567778889999999999988765432211 224677777777667777777777666666653 346899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHh
Q 001618 406 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 485 (1043)
Q Consensus 406 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1043)
+.++-.+|++..-|+.|...+-+--... . .-....+++
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------y-k~L~~Yly~ 350 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------Y-KFLTPYLYD 350 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------H-HHhhHHHHH
Confidence 9999999999988888888775422210 0 001122233
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 486 LARLL-EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 486 la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
+-..+ ...-..++|.+-+..+-....+.......-......+++ ...+++.|...+++. ..+....+++|+..
T Consensus 351 LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~ 427 (459)
T KOG4340|consen 351 LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNL 427 (459)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccc
Confidence 32222 223445555554444332211111111111111111221 233555566666553 45778899999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHH
Q 001618 562 DDWVKAKETFRAASDATDGKDSYA 585 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~ 585 (1043)
.+|..+.+.|....+....++.+-
T Consensus 428 ~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 428 EDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred cccHHHHHHHHHHHhhhcccceee
Confidence 999999999999998877777654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=121.59 Aligned_cols=288 Identities=13% Similarity=0.076 Sum_probs=213.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
.++..|..|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-...|......+..|..+++.+.|..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
...+... |.....+.-.-+.+.+..+++..+....++.- ..+........|.+..+.|+ ++.|++-|+.+++..
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVS 174 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhc
Confidence 8876543 44334455556777888899888887776532 12567778899999999998 999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCC-------------------------chHHHHHHHHHHHHc
Q 001618 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPT-------------------------KSHSYYNLARSYHSK 273 (1043)
Q Consensus 220 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~-------------------------~~~~~~~la~~~~~~ 273 (1043)
..++.+.+.++.+.++.|++..|+++...++...- ..|. ..+++...+.++++.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 99999999999999999999999999988885321 1111 123455556666777
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
|+++.|...+..+--.. .....+..+++++..- ..+++.....-+.-++.++|--.+...++-.+|++..-|+.|..+
T Consensus 255 ~n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRA-EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcc-cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 77776665543321100 0111223344444332 234455555556666666665566677777777776666666655
Q ss_pred HH
Q 001618 354 LR 355 (1043)
Q Consensus 354 ~~ 355 (1043)
+-
T Consensus 333 LA 334 (459)
T KOG4340|consen 333 LA 334 (459)
T ss_pred Hh
Confidence 43
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=135.98 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=93.9
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--
Q 001618 78 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 152 (1043)
Q Consensus 78 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~-- 152 (1043)
.++..+..++.+|..++..|+++.|+..|++++..+|.++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456788999999999999999999999999999999876 57899999999999999999999999999998733
Q ss_pred HHHHhHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHH
Q 001618 153 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALV 190 (1043)
Q Consensus 153 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~ 190 (1043)
.+++.+|.++... |+++.|+..|++++..+|++..++.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 2678888888876 6677777777777777777655443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-12 Score=133.48 Aligned_cols=196 Identities=19% Similarity=0.239 Sum_probs=143.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---
Q 001618 113 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 187 (1043)
Q Consensus 113 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 187 (1043)
++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455688999999999999999999999999999999873 256899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHhh-----hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHH
Q 001618 188 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 262 (1043)
Q Consensus 188 a~~~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 262 (1043)
+++.+|.++.... +.+.+.+|+..|.+++..+|.+..++..+..+....+ . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-----------~---------~~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-----------R---------LAGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----------H---------HHHH
Confidence 6888899888751 1123899999999999999998765533322211100 0 0122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001618 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 328 (1043)
Q Consensus 263 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 328 (1043)
...+|..+...|++.+|+..|..++...+..|....+++.+|.++...|++++|+.+++.+...+|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345666666777777777777777665555555566666677777777777777666666555444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=125.82 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=118.4
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001618 69 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 69 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p 148 (1043)
..+|++++..+|++ ++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56789999999874 677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 149 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 149 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
.+ +.+++.+|.|+..+|++++|+..|.+++.+.|+++.++..++.+....
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99 788999999999999999999999999999999999998888776544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-09 Score=114.01 Aligned_cols=297 Identities=18% Similarity=0.112 Sum_probs=200.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
..-|..-+..|+|.+|.....+.-+..+....+++.-+...-.+|+++.|-.++.++-+..++..-.+.+..+..+...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 33566667789999999999888887777778888888888889999999999999888866665677788888888999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH---HHHHH--HHHhcCCHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL---NYLAN--HFFFTGQHFL 241 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~--~~~~~g~~~~ 241 (1043)
+++.|......++...|.++.++.....+|...|+ +.....++.+.-+..--+..-. -..+. ++-..++-..
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998888889998888 7777777766665442221111 11110 1111111111
Q ss_pred HHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
+..+..---..+..-..++.....++.-+...|+.++|..+...+++.. -+. . +..-.-....+++..-++..+
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~-~--L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDP-R--LCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCh-h--HHHHHhhcCCCCchHHHHHHH
Confidence 1211111111111112335666667777777777777777777777532 111 1 111122335667777777777
Q ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 393 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 393 (1043)
+.++..|+++..+..||.++.+.+.+.+|..+|+.+++..| +...+..++.++ ..|+...|-..++.++..
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777665 345566777777 777777777777776644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=132.01 Aligned_cols=297 Identities=20% Similarity=0.201 Sum_probs=203.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCCCCChhhHHHHHH
Q 001618 230 ANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 305 (1043)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~la~ 305 (1043)
+.-+++.|++...+.+|+.+++....+ ...+.+|..+|.+|+.+++|.+|+++...-+. .+++......+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 445566677777777777776654322 22345677788888888888888887654332 22233444556677888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 359 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~ 359 (1043)
++...|.|++|+.++.+-+.+.. ....+++++|.+|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988887765432 134688889999887754 3455566655554
Q ss_pred hCCC------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 360 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 360 ~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+... ...++-+||..| ..|+++.|+...+.-+.+....++... ..++.++|.+|.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4221 245667788878 889999999888877777776655433 46788899999999999999999998876
Q ss_pred chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCc
Q 001618 432 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 511 (1043)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 511 (1043)
+... +..........|.||..|.-..++++|+.++.+-+.+..
T Consensus 264 LAie-------------------------------------lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIE-------------------------------------LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHH-------------------------------------hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4221 112234567888899999998999999998887665432
Q ss_pred ------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc----CC--ChHHHHHHHHHhhhccc
Q 001618 512 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GK--YPNALSMLGDLELKNDD 563 (1043)
Q Consensus 512 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~l~~~~~~~g~ 563 (1043)
....+++.||..+...|..+.|+.+....+.+. .. ...+..++..+....|.
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 235678888888988999888888877766543 11 23345555555444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-11 Score=139.37 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=149.7
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----
Q 001618 76 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 151 (1043)
Q Consensus 76 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~---- 151 (1043)
...+|.+..+|..++..+...|++++|+..++..+..+|+.+.+++.+|.++++.+++.++..+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4567889999999999999999999999999999999999999999999999999998888766 6666555541
Q ss_pred --------------hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 152 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 152 --------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
..+++.+|.||-++|+.++|...|+++++.+|+|+.++..+|..+... + +++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 134555555555555555555555555555555555555555555555 4 5555555555544
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh
Q 001618 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 297 (1043)
Q Consensus 218 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 297 (1043)
. |+..++|..+..+..+++... |.+...+ ..+.+++..... ....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f----------------~~i~~ki~~~~~-~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFF----------------LRIERKVLGHRE-FTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHH----------------HHHHHHHHhhhc-cchhH
Confidence 3 333344444444444444322 2222222 122222221110 11122
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
..+.-+-..|...++|++++.++..+++.+|+|..+...++.+|...
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 33444556777888899999999999999999988888888888743
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-11 Score=122.11 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 139 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 139 (1043)
+...+++..+.++++.+|+++..|+.+|.+|...|+++.|+..|++++...|+++.++..+|.++ ...|+ +.+|+.+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44566666777777777777777777777777777777777777777777777777777777654 45555 4677777
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 186 (1043)
+++++..+|++ ..+++.+|.+++..|++++|+.+|+++++++|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777776 55666677777777777777777777777666543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-09 Score=112.99 Aligned_cols=294 Identities=15% Similarity=0.115 Sum_probs=228.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQAN 200 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~ 200 (1043)
.-|..-+..|+|..|.+...+.-+..+.. ...++.-+.+.-++|+++.|-.++.++-+..++ ...+.+..+.+....|
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34555567899999999999977666665 666777888999999999999999999998554 5567888999999999
Q ss_pred hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH--HHHcCCHHH
Q 001618 201 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS--YHSKGDYEK 278 (1043)
Q Consensus 201 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~--~~~~g~~~~ 278 (1043)
+ +..|...+.+++...|.++.++.....+|+..|++.....++..+.+..-.++....-+-..+.. +...++-..
T Consensus 168 d---~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 D---YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred C---chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9 99999999999999999999999999999999999999999998887543333222222222111 112222222
Q ss_pred HH---HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 279 AG---LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 279 A~---~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
+. .+++..-... ...+.....++.-+..+|+.++|.+....+++..-+.. ....+ -..+.++...=++..+
T Consensus 245 ~~gL~~~W~~~pr~l---r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKL---RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHh---hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHH
Confidence 22 2333332222 22345567788889999999999999999998764432 22222 2345688899999999
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 356 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 356 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
+.++..|+++.++..||.++ ..+.|.+|..+|+.++...+ +...+..+|.++.+.|+...|.+.+++++.
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999998887644 378889999999999999999999999985
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=127.04 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhc---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCC
Q 001618 276 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQ 346 (1043)
Q Consensus 276 ~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~ 346 (1043)
++.|..+|..-+... ...-....++-+||..|+-+|+|+.|+...+.-+.+... ...++.++|.++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 344555555443321 122223456788899999999999999888776655322 23688899999999999
Q ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCC
Q 001618 347 IEKAQELLRKAAKID------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 418 (1043)
Q Consensus 347 ~~~A~~~~~~~l~~~------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~ 418 (1043)
++.|+++|+..+.+. .......+.||..| ...++..|+.++.+-+.+....++.. ...+++.+|..+...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 999999999876542 22356678899999 88899999999999888876654332 25788999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 001618 419 FESAHQSFKDALGD 432 (1043)
Q Consensus 419 ~~~A~~~~~~al~~ 432 (1043)
.++|+.+....+.+
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.7e-10 Score=140.04 Aligned_cols=387 Identities=13% Similarity=0.029 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALGH 339 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~ 339 (1043)
..+...+..+...|++.+|+..+..+- ..+.........+..+...|.+..+..++..+-. ....++......+.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 445566777888899988887665443 2222233345566777788888877776655311 11234455677788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 001618 340 IYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 409 (1043)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 409 (1043)
++...|++++|...+..+....+. ...+...++.++ ..|+++.|..++..++...+.............+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 888999999999999888654221 123344566677 8999999999999888753321110113456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHH
Q 001618 410 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 489 (1043)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 489 (1043)
|.++...|+++.|...+.+++...... .........+.+++.+
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~-------------------------------------g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQH-------------------------------------DVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhh-------------------------------------cchHHHHHHHHHHHHH
Confidence 999999999999999999998642100 0111234567788999
Q ss_pred HHhcCChHHHHHHHHHHHHhCc--------CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCC-----ChHHHHHHHH
Q 001618 490 LEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGD 556 (1043)
Q Consensus 490 ~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~ 556 (1043)
+...|++..|...+.+++.... .....+..++.++...|++++|...+.+++..... ....+..++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 9999999999999999887422 12334567788889999999999999998876432 2445667888
Q ss_pred HhhhccchHHHHHHHHHhhhcCCCCC-hHHH-HH---hhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHH
Q 001618 557 LELKNDDWVKAKETFRAASDATDGKD-SYAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 631 (1043)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~-~~---lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 631 (1043)
++...|++..|...+..+........ ...+ .. +....+... |+.+.|..++.......+....
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHHHhcCCCCCccch
Confidence 99999999999999999876532211 1111 00 011102222 7788888887776553322221
Q ss_pred ----HHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCC-CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001618 632 ----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 632 ----a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
....++.++...|++.+|...|++++......... ....++..+|.++..+|+..+|...+.+++..+.
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 24567888888888889988888888765332211 2345677788888888988889999888888764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-12 Score=118.03 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=113.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001618 103 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 182 (1043)
..+|++++..+|++ +..+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46788999999875 5678999999999999999999999999998 7789999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001618 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234 (1043)
Q Consensus 183 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 234 (1043)
|+++.+++.+|.++...|+ +++|+..|.+++...|+++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999988887776654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-10 Score=108.78 Aligned_cols=210 Identities=18% Similarity=0.059 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHH
Q 001618 378 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 456 (1043)
Q Consensus 378 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1043)
.+.++-+......+...+.. -.+....++-.+..+....|..+-|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 34555555555555444432 1112245556667778889999999999988765
Q ss_pred hhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHH
Q 001618 457 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
..|.+..+...-|..+...|++++|+++|..+++.+|.+..++.+...+...+|+.-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 537 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 537 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
+...+..++.+.++|..++.+|+..|+|.+|.-++++++-..|- .+..+..++.+.|..... .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~----------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGA----------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhH----------HHHHHHH
Confidence 99999999999999999999999999999999999999988776 555566788884444422 6789999
Q ss_pred HHHHHHHccCcccHHHHHHhHHHHH
Q 001618 617 ELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~~a~~~la~~~~ 641 (1043)
.+|.++++++|.+..+++++-.+..
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHHH
Confidence 9999999999999888888755443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-09 Score=133.12 Aligned_cols=366 Identities=15% Similarity=0.088 Sum_probs=259.9
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 142 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 142 (1043)
++..|+.++..+-.. +.-.......+..+...|.+..+...+..+-. ....++......+.+++..|++.+|..++..
T Consensus 356 ~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~ 434 (903)
T PRK04841 356 FPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR 434 (903)
T ss_pred CHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344666555443111 11123344457777888998887777665411 1123345567788888999999999999998
Q ss_pred HHHhCCC--------ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhhhHHhHHHHH
Q 001618 143 ALQVHPS--------CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGM 209 (1043)
Q Consensus 143 ~l~~~p~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~A~ 209 (1043)
+....+. ....+...++.++...|+++.|...++.++...|... .+...+|.++...|+ +..|.
T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~ 511 (903)
T PRK04841 435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARAL 511 (903)
T ss_pred HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHH
Confidence 8765322 1234455678888999999999999999998655422 345677888888888 99999
Q ss_pred HHHHHHHHhCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----CCchHHHHHHHHHHHHcCCHHH
Q 001618 210 EKMQRAFEIYPY------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEK 278 (1043)
Q Consensus 210 ~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~la~~~~~~g~~~~ 278 (1043)
..+.+++..... ...++..++.+++..|++..|...+..++...... +.....+..+|.++...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999998875322 12456778999999999999999999988653321 2223446678999999999999
Q ss_pred HHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHH----HHHHHHHHHcCCHHH
Q 001618 279 AGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEK 349 (1043)
Q Consensus 279 A~~~~~~a~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~ 349 (1043)
|...+..++..... ......++..++.++...|+++.|...+..+..+.+.. .... ......+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 99999998764321 12234556678999999999999999999987753321 1111 112344556789999
Q ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHcCCHHHHH
Q 001618 350 AQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 350 A~~~~~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
|...+.......+... ..+..++.++ ..|++.+|...+.+++......+... ...++..+|.++...|+.++|.
T Consensus 672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998877654322222 2245778888 89999999999999998866544332 2467888999999999999999
Q ss_pred HHHHHHHcch
Q 001618 424 QSFKDALGDG 433 (1043)
Q Consensus 424 ~~~~~al~~~ 433 (1043)
..+.+++...
T Consensus 752 ~~L~~Al~la 761 (903)
T PRK04841 752 RVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHh
Confidence 9999999863
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=114.06 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=145.3
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001618 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 147 (1043)
Q Consensus 68 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~ 147 (1043)
+...+-.....+|.+..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..+.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555566677888888 8888888888888888888888888888888888778888888888888888888888888
Q ss_pred CCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001618 148 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227 (1043)
Q Consensus 148 p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 227 (1043)
|++ ..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+ ++.|..++..+....+.+..+..
T Consensus 131 p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 131 PTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred CCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHHH
Confidence 888 67788888888888888888888888888888888888888888888888 88888888888877777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 001618 228 YLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
+|+.+....|++..|..+...-+
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHhhcCChHHHHhhccccc
Confidence 88888888888877777665433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.6e-10 Score=108.02 Aligned_cols=166 Identities=17% Similarity=0.092 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
..+-|..+++.+....|.+..+....|..+-..|++++|+++|+..+..+|.|..++.....+...+|+--+|++.+...
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~Y 146 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEY 146 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34477788887777778888888888888888888888888888888888888888777777777788888888888888
Q ss_pred HHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 223 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 223 (1043)
+...|.+ ..+|..++.+|...|+|.+|.-+++.++-+.|.++..+..+|.++...|-..++.-+..+|.++++++|.+.
T Consensus 147 L~~F~~D-~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 147 LDKFMND-QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHhcCc-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 8888888 667888888888888888888888888888888888888888888777777778888888888888888776
Q ss_pred HHHHHHH
Q 001618 224 MALNYLA 230 (1043)
Q Consensus 224 ~~~~~la 230 (1043)
.+++.+.
T Consensus 226 ral~GI~ 232 (289)
T KOG3060|consen 226 RALFGIY 232 (289)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9e-11 Score=130.05 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001618 39 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 118 (1043)
Q Consensus 39 ~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 118 (1043)
.++.....||..+|... +|..+..+-++ .|+++..|..+|.+.....-|++|.++++..- ..
T Consensus 425 emw~~vi~CY~~lg~~~-----------kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s------ar 486 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHG-----------KAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS------AR 486 (777)
T ss_pred HHHHHHHHHHHHhcccc-----------hHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh------HH
Confidence 35555666666666444 55555555555 45556666666666555555555555555442 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001618 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198 (1043)
Q Consensus 119 a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 198 (1043)
+...+|...+..++|.++...++..+.++|-. ...|+.+|.|.++++++..|..+|.+++.++|++..+|.+++..|..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 44555555555666666666666666666666 45566666666666666666666666666666666666666666666
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001618 199 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 252 (1043)
Q Consensus 199 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 252 (1043)
.++ -.+|...+.++++.+-.+..+|-+...+....|.+++|++.+.+.+..
T Consensus 566 ~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred Hhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 665 666666666666666555555555555555555555555555555543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=116.46 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH-HHccC--HH
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 686 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~-~~~g~--~~ 686 (1043)
++.++++..+++++..+|++..+|..+|.++...|+++.|+..|++++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 7899999999975 67787 59
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 687 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 687 ~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
+|+..++++++. ++.++.+++.+|.+++..|++++|+.+|++++++.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999 6778999999999999999999999999999999987653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-11 Score=111.95 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=110.0
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001618 70 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149 (1043)
Q Consensus 70 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~ 149 (1043)
..|.+++..+|.+..+.+.+|..++..|++++|...|+.++..+|.++.++..+|.+++..|++.+|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001618 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189 (1043)
Q Consensus 150 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 189 (1043)
+ ..+++.+|.++...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 67789999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-10 Score=136.70 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=177.2
Q ss_pred CCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHH
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
.+|.+..++..|+..+...+++++|+.+++..+..+|+....|+.+|.++...+++..+.-+ .++...+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~-------- 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ-------- 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc--------
Confidence 67889999999999999999999999999999999999999999999999888886666544 44444433
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 634 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 634 (1043)
..++ .+..++-..+...+. +.++++.+|.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 96 ------~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 ------NLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ------ccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 3344 333333333333333 56688999999 9998 9999999999999999999999999
Q ss_pred HhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----------
Q 001618 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---------- 704 (1043)
Q Consensus 635 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 704 (1043)
++|..|... ++++|+.++.+++..+ ...++|..+.+++++.+..-+..-+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998863 3445666666666666655322222
Q ss_pred --------HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 001618 705 --------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 750 (1043)
Q Consensus 705 --------~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~ 750 (1043)
..++.-|=..|...++|++++.+|+.+++.+|.|..+++.++.||.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2333333367777899999999999999999999999999999983
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-06 Score=98.20 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHH----HHHccCH
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV----YFAQGNF 685 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~----~~~~g~~ 685 (1043)
+.+-+|+-+++..+..+|.|...-..+..+|.-.|-+..|...|..+--..- -...+|+. +...|++
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I---------Q~DTlgh~~~~~~~t~g~~ 523 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI---------QTDTLGHLIFRRAETSGRS 523 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh---------hhccchHHHHHHHHhcccc
Confidence 6788999999999999999999999999999999999999999987643321 11233433 4556899
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 686 ALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 686 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
.-+...+...++.|. ++-.++..+++.+|
T Consensus 524 ~~~s~~~~~~lkfy~-~~~kE~~eyI~~AY 552 (932)
T KOG2053|consen 524 SFASNTFNEHLKFYD-SSLKETPEYIALAY 552 (932)
T ss_pred hhHHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 999999999998873 33344555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-10 Score=109.24 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 001618 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179 (1043)
Q Consensus 100 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 179 (1043)
..+...+-.....+|.+..+ ..++..++..|+-+.++.+..++...+|.+ ..+...+|...+..|++..|+..|.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666666777789999989 999999999999999999999999889988 5667779999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 001618 180 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 259 (1043)
Q Consensus 180 ~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 259 (1043)
.+.|+++.+|..+|.+|.+.|+ ++.|...|.+++++.|..+.+.++++..|+..|+++.|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999988654 456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 260 SHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 260 ~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
..+..+++.+....|++..|..+...-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6889999999999999999987765443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-08 Score=107.65 Aligned_cols=283 Identities=15% Similarity=0.089 Sum_probs=133.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc----CCCCC
Q 001618 398 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN----DGNHV 473 (1043)
Q Consensus 398 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 473 (1043)
....++.++..-+..+....+|++|..++-.+.+......+.. .+.....+.+.+ .....
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~----------------~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK----------------NRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----------------cCCCchhHHHHHhcCcCcCCC
Confidence 4455688999999999999999999988765544211110000 011111111111 11111
Q ss_pred CCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHH
Q 001618 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 553 (1043)
Q Consensus 474 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (1043)
........++..+|.++.++|.|..|.+-|.++=. .+..-..+++.|+.++-.-..+. ....++|.+
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGdt~KI~FFAn~-----sRqkEiYIm 1205 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGDTQKIRFFANT-----SRQKEIYIM 1205 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCCcceEEEEeec-----cccceeeee
Confidence 11123456888999999999999999988877421 22233445566665542211110 112222222
Q ss_pred HHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHH
Q 001618 554 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 633 (1043)
Q Consensus 554 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 633 (1043)
+.-|++.-+|..--+.++.++..+.+ ..++-.|++. |-..+..+- .+-.+|++|...++.+
T Consensus 1206 -AANyLQtlDWq~~pq~mK~I~tFYTK--gqafd~LanF-Y~~cAqiEi----ee~q~ydKa~gAl~eA----------- 1266 (1416)
T KOG3617|consen 1206 -AANYLQTLDWQDNPQTMKDIETFYTK--GQAFDHLANF-YKSCAQIEI----EELQTYDKAMGALEEA----------- 1266 (1416)
T ss_pred -hhhhhhhcccccChHHHhhhHhhhhc--chhHHHHHHH-HHHHHHhhH----HHHhhhhHHhHHHHHH-----------
Confidence 22234444444444444444333322 1223335555 433321110 0113333333332222
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHH
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILL 709 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~ 709 (1043)
+.|+.+...-..+...|....+.. ....+.+..-.+|. .+....|...+.++.. |.-++ ..++-
T Consensus 1267 ---~kCl~ka~~k~~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a 1334 (1416)
T KOG3617|consen 1267 ---AKCLLKAEQKNMSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAADGIRQCTTLLEE-PILDDIIRCTRLFA 1334 (1416)
T ss_pred ---HHHHHHHHhhcchHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHHHHHHHHHHhhC-cCCCCcchhHHHHH
Confidence 111111111111112222221111 01111111122222 2445555555555543 12221 56777
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHhCCCCcc
Q 001618 710 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 710 ~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~ 740 (1043)
.|-..+....+|..|...++.+....|+-..
T Consensus 1335 ~lie~~v~~k~y~~AyRal~el~~k~p~~~~ 1365 (1416)
T KOG3617|consen 1335 LLIEDHVSRKNYKPAYRALTELQKKVPNVDL 1365 (1416)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcCCccch
Confidence 8888888999999999999999888886533
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=120.06 Aligned_cols=222 Identities=19% Similarity=0.184 Sum_probs=194.1
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001618 294 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 373 (1043)
Q Consensus 294 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 373 (1043)
|........++.++...|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 445566778999999999999999999875 5677788999999999999999999888 7788899999988
Q ss_pred HH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhh
Q 001618 374 LL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 452 (1043)
Q Consensus 374 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 452 (1043)
+. ...-|++|.++.+ .. +..+...+|......++|.++..+|+..+.
T Consensus 466 v~~d~s~yEkawElsn-------~~----sarA~r~~~~~~~~~~~fs~~~~hle~sl~--------------------- 513 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSN-------YI----SARAQRSLALLILSNKDFSEADKHLERSLE--------------------- 513 (777)
T ss_pred hccChHHHHHHHHHhh-------hh----hHHHHHhhccccccchhHHHHHHHHHHHhh---------------------
Confidence 87 5444455544433 21 244556677777889999999999999988
Q ss_pred hHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhH
Q 001618 453 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 532 (1043)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 532 (1043)
++|....+||.+|.+..+.+++..|...|..++...|++..+|.+++..|...++..+
T Consensus 514 ----------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 514 ----------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred ----------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 5678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcC
Q 001618 533 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 578 (1043)
Q Consensus 533 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 578 (1043)
|...+.++++.+-.+..+|-++..+..+.|.+++|++.+.+.+...
T Consensus 572 a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 572 AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-10 Score=130.30 Aligned_cols=150 Identities=13% Similarity=-0.001 Sum_probs=128.4
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001618 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 151 (1043)
Q Consensus 72 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~ 151 (1043)
+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..+|++
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~- 153 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS- 153 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-
Confidence 3334556788888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 225 (1043)
...++.+|.++..+|++++|..+|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHH
Confidence 67788899999999999999999999988888888899999999988888 888899999888876554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=105.76 Aligned_cols=118 Identities=21% Similarity=0.313 Sum_probs=108.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 104 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 104 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
..|++++..+|.+..+.+.+|.+++..|++.+|+..|++++..+|.+ ..+++.+|.++...|++++|..+|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999998 67889999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001618 184 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225 (1043)
Q Consensus 184 ~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 225 (1043)
.++..++.+|.++...|+ +++|+..|++++..+|.+...
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEY 121 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchH
Confidence 999999999999999998 999999999999999987753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.6e-06 Score=93.86 Aligned_cols=470 Identities=13% Similarity=0.019 Sum_probs=259.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
.++|.+|...+.+.++..|+.+.+....|.++++.|++++|..+++..-...+++...+-.+-.+|..+|++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35788999999999999999999999999999999999999988888877778888888889999999999999999999
Q ss_pred HHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-HH------hHHHHHHHHHH
Q 001618 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-AA------GIRKGMEKMQR 214 (1043)
Q Consensus 142 ~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-~~------~~~~A~~~~~~ 214 (1043)
+++..+|. ....+.+-.+|.+.+.|.+=.++--+..+..|+++..+.....+.+..-. .+ -..-|...+++
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99999999 46677788888888888776666666666788887665555444443221 00 12234445555
Q ss_pred HHHhC-CCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001618 215 AFEIY-PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 292 (1043)
Q Consensus 215 al~~~-p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 292 (1043)
.+... +-.. .-....-.++...|.+++|..++..-+... ..+.+...-......+...+++.+-.++..+++..
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k--- 255 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK--- 255 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---
Confidence 55544 2211 111222344556677777777774333211 11223333445555666677777777777777653
Q ss_pred CCCChhhHHH----H---------HHHHHHcCCHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 293 PHEFIFPYYG----L---------GQVQLKLGDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAA 358 (1043)
Q Consensus 293 ~~~~~~~~~~----l---------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l 358 (1043)
.++....+.. + +..+...+..+..++...+.+.....++. ++..+-.-+...|+.+++...|-+-+
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 2222111111 0 01111122222333333333322111221 22222222335567777666554433
Q ss_pred HhCCCC------------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCH-----
Q 001618 359 KIDPRD------------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF----- 419 (1043)
Q Consensus 359 ~~~p~~------------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~----- 419 (1043)
..-|-. +.....+...+ ..++...+.+.+.+.+ ..-.+....|.+
T Consensus 336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~----------------c~l~~~rl~G~~~~l~a 399 (932)
T KOG2053|consen 336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHL----------------CVLLLLRLLGLYEKLPA 399 (932)
T ss_pred CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHH----------------HHHHHHHHhhccccCCh
Confidence 322211 11111111111 1111111111111111 111111112211
Q ss_pred HHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCch---hHHHHhHHHHHHhcCC-
Q 001618 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK---VTVLFNLARLLEQIHD- 495 (1043)
Q Consensus 420 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~- 495 (1043)
+.-..++.+...... ..+++-..+. ..+..+.+ ..+...+..++.+.++
T Consensus 400 d~i~a~~~kl~~~ye-----------------------~gls~~K~ll----~TE~~~g~~~llLav~~Lid~~rktnd~ 452 (932)
T KOG2053|consen 400 DSILAYVRKLKLTYE-----------------------KGLSLSKDLL----PTEYSFGDELLLLAVNHLIDLWRKTNDL 452 (932)
T ss_pred HHHHHHHHHHHHHHh-----------------------cccccccccc----ccccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 111111111111000 0000000000 00011111 1122334455666665
Q ss_pred --hHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 496 --TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 496 --~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
+-+|+.+++..+..+|.++.+...+..+|...|-+..|.+.|..+--.+-..-.+-+.+-..+...|.+..+...+..
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHH
Confidence 457889999999999999999999999999999999999998764322222222223334445566788888888888
Q ss_pred hhhcCCC
Q 001618 574 ASDATDG 580 (1043)
Q Consensus 574 ~l~~~~~ 580 (1043)
.+....+
T Consensus 533 ~lkfy~~ 539 (932)
T KOG2053|consen 533 HLKFYDS 539 (932)
T ss_pred HHHHHhh
Confidence 8776654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.7e-10 Score=102.47 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=100.2
Q ss_pred HhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhH
Q 001618 75 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 153 (1043)
Q Consensus 75 a~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~ 153 (1043)
+..+. ++.-...+.+|..++..|++++|..+|+.+...+|.+...|+++|.++-.+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 67778899999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
+++.+|.|++.+|+.+.|+..|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998763
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-10 Score=111.69 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~ 165 (1043)
+-..|.-++..++|.+|+..|.++|.++|.|+..+..+|.+|.++|.|..|++.++.++.++|.. ...|..+|.+|+.+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~ 162 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHcc
Confidence 34456777777777777777777777777777777777777777777777777777777777777 56677777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 166 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
|++.+|+..|+++|.++|++..++..|..+-...+.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 777777777777777777777666666655555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-08 Score=103.71 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=73.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHH
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL---LGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 155 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~---~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~ 155 (1043)
..+..++..|..++..|+|++|+..|+.++...|..+.+. +.+|.++++.++|..|+..|++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4567788999999999999999999999999999886554 8999999999999999999999999999873 4567
Q ss_pred HhHHHHHHHcC
Q 001618 156 LGIGLCRYKLG 166 (1043)
Q Consensus 156 ~~lg~~~~~~g 166 (1043)
+.+|.|+..++
T Consensus 110 Y~~g~~~~~~~ 120 (243)
T PRK10866 110 YMRGLTNMALD 120 (243)
T ss_pred HHHHHhhhhcc
Confidence 77887765543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-06 Score=97.36 Aligned_cols=188 Identities=20% Similarity=0.160 Sum_probs=101.0
Q ss_pred chhHHHHhHHHHHHhcCChHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHcCCChH
Q 001618 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARN--NLQLSIELVNEALKVNGKYPN 549 (1043)
Q Consensus 478 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~ 549 (1043)
.+..+.|.+|+.|...|++.+|+.+|.++-.. ...+ +..-.|+.+....+ +.-.|..+|+.. |.
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~~d~v~aArYyEe~----g~--- 1036 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGGSDLVSAARYYEEL----GG--- 1036 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCchhHHHHHHHHHHc----ch---
Confidence 46678899999999999999999999876432 1111 11122222222222 223344444432 10
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHh----------hhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHH
Q 001618 550 ALSMLGDLELKNDDWVKAKETFRAA----------SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 619 (1043)
Q Consensus 550 ~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 619 (1043)
-...-..+|.+.|.+.+|++..-.. -.+.+..|+..+..-+.. +... .+|++|..++
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF-F~~~------------~qyekAV~lL 1103 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF-FENN------------QQYEKAVNLL 1103 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH-HHhH------------HHHHHHHHHH
Confidence 1111223455566666665543221 124455677666666666 6666 7888888876
Q ss_pred HHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCC----CCCCchhHHHhHHHHHHHccCHHHHHHHHHHH
Q 001618 620 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS----VFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 695 (1043)
Q Consensus 620 ~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 695 (1043)
-.+-+.. + |.-++...+..-..++-+.+ .|.. +......++..+|.+..++|.|..|-+-|.+|
T Consensus 1104 ~~ar~~~--------~-AlqlC~~~nv~vtee~aE~m---Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1104 CLAREFS--------G-ALQLCKNRNVRVTEEFAELM---TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHH--------H-HHHHHhcCCCchhHHHHHhc---CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 5543221 1 11122222222222222222 1211 11123467888899999999999998888776
Q ss_pred HHH
Q 001618 696 LRK 698 (1043)
Q Consensus 696 l~~ 698 (1043)
=.+
T Consensus 1172 GdK 1174 (1416)
T KOG3617|consen 1172 GDK 1174 (1416)
T ss_pred hhH
Confidence 443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=116.31 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 302 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 302 (1043)
+.+....|.+++..|++++|++++... ...+.......++...++++.|...+..+.+ ..++.....+.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa 170 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLA 170 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHH
Confidence 334444445555555555555544321 2334555555566666666666666655543 23344433444
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCC
Q 001618 303 LGQVQLKLG--DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSD 379 (1043)
Q Consensus 303 la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~ 379 (1043)
.+.+.+..| .+.+|..+|+.+....+.++.++..++.++..+|++++|...+.+++..+|.++.++.+++.+. ..|+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 444444444 4666666666655555555666666666666666666666666666666666666666666655 5555
Q ss_pred H
Q 001618 380 T 380 (1043)
Q Consensus 380 ~ 380 (1043)
.
T Consensus 251 ~ 251 (290)
T PF04733_consen 251 P 251 (290)
T ss_dssp T
T ss_pred C
Confidence 5
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=114.48 Aligned_cols=259 Identities=15% Similarity=0.118 Sum_probs=177.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCH
Q 001618 90 GQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 90 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~ 168 (1043)
...++..|+|..++..++ ....+|. .......+.++++.+|++...+.-+... ..|.. .+...++..+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l--~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPEL--QAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCC--HHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhH--HHHHHHHHHHhCccch
Confidence 456677899998887776 3333332 3456677888888889888766544331 13333 2233344444444456
Q ss_pred HHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001618 169 GKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 246 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (1043)
+.++..++..+.... .+....+..|.++...|+ +++|+..+.+. .+.........+|...++++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666655443221 244556666677777777 88888877653 56777778888999999999999999
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 247 ETALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 324 (1043)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 324 (1043)
..+.+.. .+...+....+.+....| .+.+|..+|+.... ..+..+..+..++.+++.+|+|++|...+..++
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8877542 233333333344444455 69999999999875 445677888999999999999999999999999
Q ss_pred HHCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHH
Q 001618 325 EIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQA 367 (1043)
Q Consensus 325 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~ 367 (1043)
..+|++++++.+++.+....|+. +.+.+++.++...+|.++.+
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999998 66777888888889987754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.4e-09 Score=109.96 Aligned_cols=153 Identities=19% Similarity=0.244 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 114 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 114 p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
|.-..++++.|..++..|.++.|+..++.++...|++ +.++-..+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 6677788888888888888888888888888888877 666777788888888888888888888888888877788888
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc
Q 001618 194 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 273 (1043)
Q Consensus 194 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~ 273 (1043)
..++..|+ +.+|+..++..+..+|+++..|..|+..|..+|+..++. ...+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~--------------------~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL--------------------LARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH--------------------HHHHHHHHhC
Confidence 88888887 778888888888888888888888888888888765433 3445667777
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001618 274 GDYEKAGLYYMASVKEI 290 (1043)
Q Consensus 274 g~~~~A~~~~~~a~~~~ 290 (1043)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 88888888888887754
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-08 Score=102.92 Aligned_cols=168 Identities=16% Similarity=0.190 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-----cHHHH
Q 001618 333 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-----PIEVL 406 (1043)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~ 406 (1043)
+.......|.++.+...+..-.+.++....+.+.+.+..+..+ ..|++..|.+.+... .+....+... ....+
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheee
Confidence 3333444556666777777777777777777888888888887 899999988876532 1211112111 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc-chhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHh
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 485 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1043)
+++|+++++.|.|.-+..+|.+++. .|..... + +.....-.-.......++|+
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~eilYN 340 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSMEILYN 340 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchhhHHh
Confidence 8999999999999999999999995 3321110 0 00000000023356789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Q 001618 486 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 527 (1043)
Q Consensus 486 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 527 (1043)
.|..|...|++-.|.++|.+++...-.++..|++++.++...
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-09 Score=122.73 Aligned_cols=148 Identities=9% Similarity=-0.038 Sum_probs=136.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 001618 102 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181 (1043)
Q Consensus 102 A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 181 (1043)
++.-+.......|.++.+++.+|.+....|.+++|+.+++.++.+.|++ ..++..++.++.+++++++|+..+++++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-SEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3444444456678899999999999999999999999999999999999 788999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001618 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 253 (1043)
Q Consensus 182 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 253 (1043)
+|++..+++.+|.++...|+ +++|+..|++++..+|+++.++..+|..+...|+.++|...|.+++...
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~---~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQ---SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999 9999999999999999999999999999999999999999999998764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=102.28 Aligned_cols=189 Identities=20% Similarity=0.260 Sum_probs=115.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 156 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~ 156 (1043)
.+..++..|..++..|+|.+|+..|+.++...|.. +.+.+.+|.+++..|+|..|+..|++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678888999999999999999999999888765 56788899999999999999999999999988873 45677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 236 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 236 (1043)
.+|.+++.+..-. + ....+.....+|+..|+..+...|++..+-.
T Consensus 84 ~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 7777766542111 0 0011112255666666666666666542211
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 237 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 237 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
|...+..+.. ....--+.+|..|.+.|.|..|+..++.+++.++..+....++..++.++..+|..+.|
T Consensus 129 -----A~~~l~~l~~------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 129 -----AKKRLAELRN------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -----HHHHHHHHHH------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred -----HHHHHHHHHH------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1111111110 11133445666677777777777777777776666555566677777777777766643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-08 Score=103.10 Aligned_cols=150 Identities=20% Similarity=0.234 Sum_probs=88.7
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 231 (1043)
...+++.+..++..|.++.|+..+...+...|+|+..+...+.+++..|+ ..+|.+.+++++.++|..+.+...+|.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666 666666666666666666666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 001618 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 311 (1043)
Q Consensus 232 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g 311 (1043)
.|+..|++.+|+..++..+.. .|.++..|..|+.+|..+|+..+|... .+..+...|
T Consensus 383 all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~A--------------------~AE~~~~~G 439 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALLA--------------------RAEGYALAG 439 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHHH--------------------HHHHHHhCC
Confidence 666666666666666655533 345556666666666666655444322 233444555
Q ss_pred CHHHHHHHHHHHHHHC
Q 001618 312 DFRSALTNFEKVLEIY 327 (1043)
Q Consensus 312 ~~~~A~~~~~~~l~~~ 327 (1043)
+++.|+..+..+.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 6666666665555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=106.45 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
.+.++|.+|+..|++|+.++|.++..|..++.+|.+.|.|+.|++-++.++.++|....+|..+|.+|+.+|+|.+|+..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcCCHH
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLG 169 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~ 169 (1043)
|+++|.++|++ ..++-.|..+-..++...
T Consensus 172 ykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 99999999999 566666666655555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-09 Score=95.36 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=94.2
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001618 110 LEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188 (1043)
Q Consensus 110 l~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 188 (1043)
.... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+.+|.+++.++|+++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 3445 6677888999999999999999999999999999999 7779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 189 LVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 189 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
++.+|.+++..|+ ...|...|+.++...
T Consensus 106 ~~~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 9999999999998 889999999888776
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.2e-08 Score=99.08 Aligned_cols=187 Identities=12% Similarity=0.128 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHH
Q 001618 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 189 (1043)
Q Consensus 115 ~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 189 (1043)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3577788999999999999999999999999999883 22358899999999999999999999999999864 567
Q ss_pred HHHHHHHHHhh---------------hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001618 190 VALAVMDLQAN---------------EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254 (1043)
Q Consensus 190 ~~la~~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 254 (1043)
+.+|.++...+ +.....+|+..|+..+...|+...+-. |...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~--------------A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD--------------ATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH--------------HHHHHHHHHH---
Confidence 78887654433 223356788888888888887753211 1111111100
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 001618 255 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 255 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
....--+..|..|.+.|.|..|+.-++.++..++..+....+++.++.+|...|..++|.....
T Consensus 173 ---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 173 ---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred ---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0012233455566666666666666666666555555555566666666666666666555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-08 Score=99.36 Aligned_cols=191 Identities=20% Similarity=0.256 Sum_probs=115.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHH
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 555 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 555 (1043)
.+..++..|..+...|++.+|+..|+.++...|.. ..+.+.+|.++...|++..|+..++..+...|.++.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----- 78 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----- 78 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-----
Confidence 34555566666666666666666666666655542 4555556666666666666666666666665555431
Q ss_pred HHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHH
Q 001618 556 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~ 635 (1043)
.++++.+|.+ ++....... ......+...+|+..|+.++...|++.++.
T Consensus 79 ---------------------------~~A~Y~~g~~-~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-- 127 (203)
T PF13525_consen 79 ---------------------------DYALYMLGLS-YYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE-- 127 (203)
T ss_dssp ---------------------------HHHHHHHHHH-HHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH--
T ss_pred ---------------------------hhHHHHHHHH-HHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH--
Confidence 1233333333 222211110 000111678899999999999999876543
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLART 714 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~ 714 (1043)
+|...+..+.+.. ...-+.+|..|++.|.|..|+..|+.+++.||+++. ..++..++.+
T Consensus 128 ------------~A~~~l~~l~~~l--------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 128 ------------EAKKRLAELRNRL--------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 3444444444432 345667899999999999999999999999987766 7899999999
Q ss_pred HHhhhcHHHHH
Q 001618 715 HYEAEQWQDCK 725 (1043)
Q Consensus 715 ~~~~g~~~~A~ 725 (1043)
+.+.|..+.|.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 99999988543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-09 Score=114.71 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~ 165 (1043)
+...|..++..|+|+.|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ ..+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 67789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 166 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
|++++|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877765444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.3e-05 Score=82.20 Aligned_cols=415 Identities=12% Similarity=0.038 Sum_probs=214.2
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh
Q 001618 73 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 152 (1043)
Q Consensus 73 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~ 152 (1043)
++-++.+|.+..+|+.+..-+-.+ .+++....|++.+...|..+.+|...+...+..++|+.-..+|.++|..--+. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 556788999999999998877666 99999999999999999999999999999999999999999999998765443 2
Q ss_pred HHHHhHHHHHHHcCCHHHHHHH----HHHHHh---hCCCcHHHHHHHHHHHHHhhhH------HhHHHHHHHHHHHHHhC
Q 001618 153 AIRLGIGLCRYKLGQLGKARQA----FQRALQ---LDPENVEALVALAVMDLQANEA------AGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 153 ~~~~~lg~~~~~~g~~~~A~~~----~~~al~---~~p~~~~a~~~la~~~~~~~~~------~~~~~A~~~~~~al~~~ 219 (1043)
.....+-.+....|....+... |+-++. .++.....|...+..+..-... ..++.....|++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 2223344444444544443332 333322 3455555555555443321111 11344444555554433
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCCC
Q 001618 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHE 295 (1043)
Q Consensus 220 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~ 295 (1043)
-.+..-+. .+|..-+.-.+.+. ..-.+--....|..|...+++...... ..+.
T Consensus 168 m~nlEkLW---------~DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 168 MHNLEKLW---------KDYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cccHHHHH---------HHHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 22221110 11111111111111 011111222334455555544433111 0010
Q ss_pred ChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHH
Q 001618 296 FIFPYYGLGQVQLKLGDF--RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAAKIDPRDAQAFIDL 371 (1043)
Q Consensus 296 ~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~l 371 (1043)
... .|-- -.+++.+...++....|+--. ..|. -....-.|++++..-+-.+.+|+..
T Consensus 225 vp~-----------~~T~~e~~qv~~W~n~I~wEksNpL~t--------~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~ 285 (656)
T KOG1914|consen 225 VPP-----------KGTKDEIQQVELWKNWIKWEKSNPLRT--------LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDY 285 (656)
T ss_pred CCC-----------CCChHHHHHHHHHHHHHHHHhcCCccc--------ccccHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 000 0000 011122222222111110000 0000 0011122333333334444444443
Q ss_pred HHHH--------hcCC-------HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHcch
Q 001618 372 GELL--------ISSD-------TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF---EKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 372 a~~~--------~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~ 433 (1043)
+..+ ..|+ ..++..+|+.++...... ...+++.++..-- ..+.++....++.+++..
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~----~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~- 360 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE----NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI- 360 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-
Confidence 3332 2222 344555555555432221 1112222211111 111233344444444432
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc
Q 001618 434 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 513 (1043)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 513 (1043)
...+..-++.++...-.+..-...|..+|.++-+..-..
T Consensus 361 -----------------------------------------~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 361 -----------------------------------------EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred -----------------------------------------hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 111222344555555555566778888888887644333
Q ss_pred HHHHHHHHHH-HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 514 VDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 514 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
..++..-|.+ |...++..-|..+|+-.+...++.+..-..+...+...++-..+...|++++..
T Consensus 400 hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 400 HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 3444444443 446788899999999999999999998888888899999999999999998876
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-05 Score=79.50 Aligned_cols=421 Identities=14% Similarity=0.105 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCh--hHHHHhHHHHHH-HcCCHHHHHHHHHHHHhhC---CCc----
Q 001618 118 PALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRY-KLGQLGKARQAFQRALQLD---PEN---- 185 (1043)
Q Consensus 118 ~a~~~la~~~~~~g--~~~~Al~~~~~~l~~~p~~~--~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~---p~~---- 185 (1043)
.+++++|..+...| +...++++++..+...|... +..++.+|.+++ ...+++.|...++++..+. |..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45666676666666 67777777777776666552 233455555544 3567777777777776543 222
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH
Q 001618 186 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 261 (1043)
Q Consensus 186 ~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 261 (1043)
..+...|+.+|....+ .+..+...+++++++....+ ...+.|+.++....++..|..++..-.... ++ ...
T Consensus 88 f~a~SlLa~lh~~~~~--s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA--d~-~~~ 162 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQ--SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA--DH-ICF 162 (629)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc--ch-hhh
Confidence 2345556666665542 25666667777776655444 223344444444455544444422111000 00 000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHH--HHHHHHHcC---CHHHHHHHHHHHHHHCCCcH-----
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG--LGQVQLKLG---DFRSALTNFEKVLEIYPDNC----- 331 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--la~~~~~~g---~~~~A~~~~~~~l~~~p~~~----- 331 (1043)
.|+ ...+. .+.++.... +...+...+..+......++
T Consensus 163 ~yl---------------------------------r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~ 209 (629)
T KOG2300|consen 163 PYL---------------------------------RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEM 209 (629)
T ss_pred HHH---------------------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHH
Confidence 000 11111 112222222 22233333333333221111
Q ss_pred --HHHHHHHHHH-HHcCCHHHHHHHHHHHHHh----CC----------------------C-CHHHHHHHHHHH---hcC
Q 001618 332 --ETLKALGHIY-VQLGQIEKAQELLRKAAKI----DP----------------------R-DAQAFIDLGELL---ISS 378 (1043)
Q Consensus 332 --~~~~~la~~~-~~~g~~~~A~~~~~~~l~~----~p----------------------~-~~~~~~~la~~~---~~~ 378 (1043)
..+..+-.+| ...|+...+...++++-.. .+ + ...++..+..+. ..|
T Consensus 210 LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~g 289 (629)
T KOG2300|consen 210 LKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAG 289 (629)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhH
Confidence 1223333333 3446666665555544221 11 0 112222222222 345
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCC-c--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhh
Q 001618 379 DTGAALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 449 (1043)
Q Consensus 379 ~~~~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 449 (1043)
-++++.++-++++....+..... . ...+-++..+-.-.|++.+|++....+.+.|.....
T Consensus 290 y~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~----------- 358 (629)
T KOG2300|consen 290 YFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT----------- 358 (629)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc-----------
Confidence 67778887777777655543222 1 244556777888899999999998887764421000
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC-c--HHHHHHHHHHHHH
Q 001618 450 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD-Y--VDAYLRLAAIAKA 526 (1043)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~la~~~~~ 526 (1043)
..+ .....+.+.+.+|......+.++.|...|..+.+.... + ..+-.+++.+|..
T Consensus 359 ----------~~L------------lr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~ 416 (629)
T KOG2300|consen 359 ----------PLL------------LRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR 416 (629)
T ss_pred ----------hHH------------HHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH
Confidence 000 11235667788888888999999999999998875432 2 4456678888999
Q ss_pred cCChhHHHHHHHHHHHHcCCC----------hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChH-----HHHHhhh
Q 001618 527 RNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLSLGN 591 (1043)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-----~~~~lg~ 591 (1043)
.++.+.-.+.++ .+.|.+ ..+++..|.+.+.++++.+|...+.+.++.....+.. .+..||.
T Consensus 417 ~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 417 IGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred hccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 887655444443 344543 2367788888899999999999999999987554443 3445566
Q ss_pred HHHHHHHhhcccChhHHhhhHHHHHHHHHHHHcc
Q 001618 592 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 625 (1043)
Q Consensus 592 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 625 (1043)
+ +... |+..++......++..
T Consensus 494 v-~lsl------------gn~~es~nmvrpamql 514 (629)
T KOG2300|consen 494 V-FLSL------------GNTVESRNMVRPAMQL 514 (629)
T ss_pred H-HHHh------------cchHHHHhccchHHHH
Confidence 6 5555 7777777766666543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-05 Score=87.05 Aligned_cols=326 Identities=12% Similarity=0.102 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHH
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVPA 119 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------------------~~p~~~~a 119 (1043)
..+++|+.|...++. +...|.....|..++.+.+..|++--|..+|..+-. ...+-...
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 456889999887765 567788888899988888888887777666643211 12233445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
+...|.+.+...+|.+|..+|-. .+... . ..-.|..+.++++|+..-+-. -.|.........-..+...
T Consensus 534 ykvra~lail~kkfk~ae~ifle---qn~te--~----aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 534 YKVRAMLAILEKKFKEAEMIFLE---QNATE--E----AIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHh---cccHH--H----HHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 55666666666777777666532 12111 1 112345556666666543311 1222111111111122222
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---------CCCchHHHHHHHHHH
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---------GPTKSHSYYNLARSY 270 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~~~~la~~~ 270 (1043)
|+ -.+|- ++...+... .....+|...|....|......--..... .-...+.|-.-|.+|
T Consensus 603 ~q---d~ka~-------elk~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlf 671 (1636)
T KOG3616|consen 603 GQ---DEKAA-------ELKESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLF 671 (1636)
T ss_pred Cc---hhhhh-------hhccccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 22 11111 111111111 11223444555544443332111000000 001123444455566
Q ss_pred HHcCCHHHHHHHHHHHHH--------hcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 001618 271 HSKGDYEKAGLYYMASVK--------EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 342 (1043)
Q Consensus 271 ~~~g~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 342 (1043)
.+..++++|+++|.+.-. .+.-+...+..--..|.-+...|+++.|+..|-.+- .+........
T Consensus 672 eki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaieaai 743 (1636)
T KOG3616|consen 672 EKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAI 743 (1636)
T ss_pred HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHh
Confidence 666666677666654321 011111122223345566666777777776665431 1122223334
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHH
Q 001618 343 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 421 (1043)
Q Consensus 343 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 421 (1043)
....+.+|+.++..+-... .....|-.++.-| ..|+++.|..+|.++- .......+|-+.|++..
T Consensus 744 ~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhccccHHH
Confidence 4456666666665543221 1223344456666 6677776666654432 22333455666777777
Q ss_pred HHHHHHHHH
Q 001618 422 AHQSFKDAL 430 (1043)
Q Consensus 422 A~~~~~~al 430 (1043)
|..+-.+..
T Consensus 810 a~kla~e~~ 818 (1636)
T KOG3616|consen 810 AFKLAEECH 818 (1636)
T ss_pred HHHHHHHhc
Confidence 766665544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.0001 Score=82.10 Aligned_cols=227 Identities=19% Similarity=0.194 Sum_probs=124.8
Q ss_pred HHHHcCChHHHHHHHHH------HHHh----CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 126 VEFNRGRYSDSLEFYKR------ALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 126 ~~~~~g~~~~Al~~~~~------~l~~----~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
++-+..++++|+++|++ ++++ .|......--..|.-+...|+++.|+..|-.+-.+ ..-...
T Consensus 670 lfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kaiea 741 (1636)
T KOG3616|consen 670 LFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAIEA 741 (1636)
T ss_pred HHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHHHH
Confidence 33444455566655543 2222 23332233334566777778888887777554211 111111
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCC
Q 001618 196 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 275 (1043)
Q Consensus 196 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 275 (1043)
...... +.+|+..+...-... .....+-.++..|...|+|+.|..+|..+- .+..-...|.+.|+
T Consensus 742 ai~ake---w~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 742 AIGAKE---WKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred Hhhhhh---hhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhcccc
Confidence 122222 667776666543322 223345567788888888888888876542 23334456777788
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 276 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 276 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
+.+|..+-.+.. .+......|...+.-+-..|+|.+|..+|-.+- .|+ ....+|-+.|.++..+.+..
T Consensus 807 w~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~--~p~------~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--EPD------KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--Cch------HHHHHHHhhCcchHHHHHHH
Confidence 888877776665 344555566667777777788877776653321 121 12234555555555555444
Q ss_pred HHHHhCCCC-HHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001618 356 KAAKIDPRD-AQAFIDLGELL-ISSDTGAALDAFKTA 390 (1043)
Q Consensus 356 ~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~~~~a 390 (1043)
+ ..|+. ...+..++.-+ ..|+...|...|-++
T Consensus 875 k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 875 K---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred H---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3 22332 34555666666 667776666655444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=92.11 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=95.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHHh
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 157 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~~ 157 (1043)
+.+++.+|..++..|++++|+..|..++..+|++ +.+++.+|.+++..|+++.|+.+|+.++...|+.+ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999998876 56889999999999999999999999999988852 467889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 190 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 190 (1043)
+|.++..+|++++|...|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-07 Score=93.18 Aligned_cols=306 Identities=15% Similarity=0.096 Sum_probs=195.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCCCChhhHHHHHHHH
Q 001618 231 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQ 307 (1043)
Q Consensus 231 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~la~~~ 307 (1043)
.-++...++.+++....+.+............+-.+..+...+|.|++++.+--..+... ........++.+++..+
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444332222333444455666667777777665543333211 12222345677788888
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-
Q 001618 308 LKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL- 375 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~- 375 (1043)
...-++.+++.+....+...... ..+...++.++.-++.++++++.|+++++...++ ..++..|+.++
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 88888888888777766543222 2566778888888888888998888888764322 35677888888
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhh
Q 001618 376 ISSDTGAALDAFKTARTLLKKAGE-EVP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 450 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 450 (1043)
...|+++|+-+..++..+....+- ... ..+++.++..+...|..-.|.++.+++.++....
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~-------------- 239 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH-------------- 239 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--------------
Confidence 888899998888888888777542 222 4677889999999999999999999998753100
Q ss_pred hhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC------cHHHHHHHHHHH
Q 001618 451 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIA 524 (1043)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~ 524 (1043)
...+.....+..+|.+|...|+.+.|..-|+.+...... .+.++...+.++
T Consensus 240 -----------------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 240 -----------------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred -----------------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 123446677888999999999999999999998864422 133444444443
Q ss_pred HHcCC-----hhHHHHHHHHHHHHcCCC------hHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 525 KARNN-----LQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 525 ~~~g~-----~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
....- .-.|+++-.+++++...- ...+..++.+|...|.-++-...+..
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 32222 233666666666654321 23556677777666665555555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=89.85 Aligned_cols=105 Identities=30% Similarity=0.332 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 36 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 115 (1043)
Q Consensus 36 ~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 115 (1043)
+|..+++.-|.+|=.+|-.. -|..-|.+++.+.|..+.++..+|..+...|+|+.|.+.|+.++..+|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56666666666666666544 7778888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001618 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 151 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~ 151 (1043)
+..+.+..|..++--|+|.-|...+.+..+.+|++|
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 888888888888888888888888888888888873
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00019 Score=78.05 Aligned_cols=189 Identities=14% Similarity=0.174 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHHcCCChH-HHHHHHHHhhhccchHHHHHH
Q 001618 496 TVAASVLYRLILFKY-QDYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 570 (1043)
Q Consensus 496 ~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 570 (1043)
..++..+|+.++..- ..+...++.++..-...- ..+.....+++++.....++. ++..+.+.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 667777888777532 233444555544332222 366677788888887655544 566666666666778899999
Q ss_pred HHHhhhcCCC-CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHH
Q 001618 571 FRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 649 (1043)
Q Consensus 571 ~~~~l~~~~~-~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A 649 (1043)
|.++-+..-. +..+...++.. |+.. ++..-|..+|+--++..++.+...+.....+.+.++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 9999875433 35555544443 4555 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001618 650 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 650 ~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
..+|++++...- + ......+|..+-..-..-|+...++++=++....|+
T Consensus 455 R~LFEr~l~s~l-~-~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVL-S-ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccC-C-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999998720 0 013457788777777778888888888777777665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=108.52 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=103.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 199 (1043)
+...|..++..|+|..|+.+|.+++..+|.+ ..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 200 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
|+ +.+|+..|++++.++|.++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.3e-08 Score=97.73 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHcchhhhh----h-----------hhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001618 39 AILNALGVYYTYLGKIETK----Q-----------REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 103 (1043)
Q Consensus 39 ~~l~~La~~y~~~g~~~~~----~-----------~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 103 (1043)
-+...++..|+.+|.+... + ...+...+.-+.-++.-+..+|+++..|..+|.+|+..|++..|.
T Consensus 97 ~~~~v~~~~y~~~g~y~~vg~~~q~~~r~~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~ 176 (287)
T COG4235 97 ALVAVLALSYLLLGLYQAVGAPEQPADRLADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDAL 176 (287)
T ss_pred HHHHHHHHHHHHhhhhhhcCCccccchhhhcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHH
Confidence 3455566677777665421 1 011233556677777788889999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 104 SAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 104 ~~~~~~l~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
..|.+++++.|+|+..+..+|.+++... ...++..+|++++..+|.+ ..+++.+|..++..|++.+|...|+.++.
T Consensus 177 ~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 177 LAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999999999988888887654 4568888899999999988 66788889999999999999999999988
Q ss_pred hCCCcHH
Q 001618 181 LDPENVE 187 (1043)
Q Consensus 181 ~~p~~~~ 187 (1043)
..|.+..
T Consensus 256 ~lp~~~~ 262 (287)
T COG4235 256 LLPADDP 262 (287)
T ss_pred cCCCCCc
Confidence 8876543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-07 Score=90.02 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=135.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
+..++.+|..|-..|-+.-|..-|.+++.+.|.-+.++..+|.-+...|+|+.|.+.|+.+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 45677889999999999999999999999999999999999999999999999999999999999999 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHhcCCHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM-QRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+--|++..|..-|.+-.+.+|+++---..|-......+ ..+|..-+ +++...+.. ...|+... +..|+..
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d----P~~A~tnL~qR~~~~d~e-~WG~~iV~---~yLgkiS- 214 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD----PKQAKTNLKQRAEKSDKE-QWGWNIVE---FYLGKIS- 214 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC----HHHHHHHHHHHHHhccHh-hhhHHHHH---HHHhhcc-
Confidence 99999999999999999999998754333332222222 45555433 444333322 11222111 1112211
Q ss_pred HHHHHHHHHhhcCCC----CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 242 VEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 288 (1043)
...++.++......+ ....++++.+|..+...|+.++|...|.-++.
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 122223332221111 11235677777777777777777777776664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=92.67 Aligned_cols=120 Identities=21% Similarity=0.270 Sum_probs=101.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~ 155 (1043)
+|....+++.+|..+...|++++|+.+|++++...|+. ..+++.+|.++...|++++|+..|.+++...|.. ...+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHH
Confidence 34566788999999999999999999999999877653 4689999999999999999999999999999998 6678
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
..+|.++...|+...+...+..++.. +.+|+.++.+++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 88999999999987777666655432 677888888888888876
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-06 Score=87.33 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CCCChh
Q 001618 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIF 298 (1043)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~ 298 (1043)
.++.+++..+...-++.+++.+....+..+...+ .-......++.++..++.|+++++.|+.+++.... ......
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 4556666666666777777777776665544433 22356677888888999999999999988863322 222345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----N------CETLKALGHIYVQLGQIEKAQELLRKAAKID------P 362 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p 362 (1043)
++..+|.++....++++|+-+..++..+... + .-+++.++..+..+|..-.|.++.+++.++. +
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6788899999999999999888888775321 1 2456778888888899999999998887753 3
Q ss_pred CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001618 363 RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 399 (1043)
Q Consensus 363 ~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 399 (1043)
........++.+| ..|+.+.|..-|+.+.......++
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence 3456677788899 889999999999888887655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=88.25 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=99.3
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHH
Q 001618 75 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 154 (1043)
Q Consensus 75 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~ 154 (1043)
+..+.+..-...+..|.-++..|++++|..+|.-+...+|.++..|+++|.++..+++|++|+..|..+..+++++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4455556667889999999999999999999999999999999999999999999999999999999999999988 667
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001618 155 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185 (1043)
Q Consensus 155 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 185 (1043)
.+..|.|++.+|+...|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 89999999999999999999999997 4543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-06 Score=100.23 Aligned_cols=234 Identities=16% Similarity=0.184 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCc----HHHHHHHHHHHHHhhhHHhHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPEN----VEALVALAVMDLQANEAAGIRK 207 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~la~~~~~~~~~~~~~~ 207 (1043)
-.+....|.+.+..+|+. ...|+.+...+..+++.+.|+..+++||.. ++.. ...|..+-++....|. -+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHH
Confidence 344567788899999998 778888888889999999999999999974 4432 2344444444444444 566
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001618 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287 (1043)
Q Consensus 208 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 287 (1043)
....|+++.+... ...++..|..+|...+.+++|.++++.+++... .....|..++..++.+++-+.|..++.+++
T Consensus 1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6778888877653 345788899999999999999999999998764 445789999999999999999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Q 001618 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDA 365 (1043)
Q Consensus 288 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~ 365 (1043)
..++. ..........|++-++.|+.+.+..+|+-.+..+|.-.++|..+...-.+.|+...+..+|++++.+. |...
T Consensus 1592 ~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 87655 44666777889999999999999999999999999999999999999999999999999999998764 4445
Q ss_pred HHHHHHHHHH
Q 001618 366 QAFIDLGELL 375 (1043)
Q Consensus 366 ~~~~~la~~~ 375 (1043)
..++..-.-|
T Consensus 1671 KfffKkwLey 1680 (1710)
T KOG1070|consen 1671 KFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=83.67 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
+++.+|.+++..|++++|+..|..++...|.+..+++.+|.++...|++++|+.+|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888888877 4667788888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001618 165 LGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p 183 (1043)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888877766
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-07 Score=93.89 Aligned_cols=121 Identities=21% Similarity=0.155 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 212 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 212 (1043)
.+.-+.-++..+..+|++ ..-|..+|.+|+.+|++..|...|.+++++.|+|++.+..+|.++....+.....++...|
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 556666778888899999 6678899999999999999999999999999999999999998888877656678899999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001618 213 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254 (1043)
Q Consensus 213 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 254 (1043)
++++..+|.+..+++.||..++..|+|.+|...++.++...+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999887643
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=85.20 Aligned_cols=108 Identities=29% Similarity=0.358 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 337 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 337 (1043)
..++.+|..+...|++++|+..|..++...+..+....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4667777778888888888888887776544434445667778888888888888888888888777664 5677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001618 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 368 (1043)
Q Consensus 338 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 368 (1043)
|.++...|++++|+.++.+++...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888877776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.8e-08 Score=80.32 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=42.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 148 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~~l~~~p 148 (1043)
++.+|+.+|.+++..|++++|+..|.+++..+|+++.+++.+|.++..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 56666666666666655
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.6e-07 Score=96.45 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=114.5
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001618 87 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 151 (1043)
Q Consensus 87 ~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~~l~~~p~~~ 151 (1043)
+.+|...+..+. ...|+.+|.+++ ..+|....++..+|.|++.. ....+|+....+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 667777776664 567889999999 88999999999999988765 23567888888999999998
Q ss_pred hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001618 152 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225 (1043)
Q Consensus 152 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 225 (1043)
+.++..+|.+++..++++.|...|++++.++|+...+++..|.+..-.|+ .++|+..++++++++|....+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhHH
Confidence 77788899999999999999999999999999999999999999988888 899999999999999876533
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=94.50 Aligned_cols=107 Identities=16% Similarity=0.267 Sum_probs=99.7
Q ss_pred HHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 001618 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 711 (1043)
Q Consensus 633 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 711 (1043)
.+..|.-+...|+|..|...|...++.+|++.+ .+.++|.||.+++.+|+|..|...|..+++.||.++- |..++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 667778888999999999999999999998875 5789999999999999999999999999999988776 8999999
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 712 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 712 a~~~~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
|.+....|+.++|..+|+++++.+|+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999999998776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.1e-06 Score=81.18 Aligned_cols=195 Identities=14% Similarity=0.163 Sum_probs=136.8
Q ss_pred HHHhHHHHHHhcCChHHHH-HHHHHHHHhCcCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 482 VLFNLARLLEQIHDTVAAS-VLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
+...++..+..-++.+.-+ ..++.+....... ......-+.++...+++++|...+.. ..+.++...-..+++
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHH
Confidence 3334445444444444444 3344444333333 34455556778888899999887776 334566667777888
Q ss_pred hccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHH
Q 001618 560 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 639 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~ 639 (1043)
++.+++-|...++++.+... -..+..|+.. |...+... +.+..|.-+|+.+-...|..+...++.+.+
T Consensus 149 k~~r~d~A~~~lk~mq~ide---d~tLtQLA~a-wv~la~gg--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDE---DATLTQLAQA-WVKLATGG--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHccch---HHHHHHHHHH-HHHHhccc--------hhhhhHHHHHHHHhcccCCChHHHccHHHH
Confidence 88888889888888877643 3455557777 76664432 568888888888888888888888888888
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+..+|++++|..+++.++...+ .+|+++.|+..+-...|...++..-+-.-++.
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888888888888888877 67888888888888888887777665554544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=89.36 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHH
Q 001618 65 FILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 65 ~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
|..+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334455555554444443 4566777888888888888888888887775542 34777788888888888888888
Q ss_pred HHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 140 ~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
|.+++...|.. ...+..+|.++..+|
T Consensus 95 ~~~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 95 YFQALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 88888877777 455667777777444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-08 Score=84.00 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHH
Q 001618 96 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 173 (1043)
Q Consensus 96 ~g~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~ 173 (1043)
+|+|+.|+.+|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777777664 344556667777777777777777766 5555555 4445556777777777777777
Q ss_pred HHHHH
Q 001618 174 AFQRA 178 (1043)
Q Consensus 174 ~~~~a 178 (1043)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 76653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.5e-06 Score=81.37 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=70.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--hHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 156 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~--~~~~~ 156 (1043)
.+..|+..|...++.|+|.+|+..|+.+....|.+ ..+.+.++.++++.++|+.|+..+++.+.+.|+++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999998875 46889999999999999999999999999999873 44555
Q ss_pred hHHHHHH
Q 001618 157 GIGLCRY 163 (1043)
Q Consensus 157 ~lg~~~~ 163 (1043)
..|.+++
T Consensus 113 lkgLs~~ 119 (254)
T COG4105 113 LKGLSYF 119 (254)
T ss_pred HHHHHHh
Confidence 6666644
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-07 Score=85.21 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001618 67 LATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.+++..|+|++|+..+
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555666666666666 4556666777777777777777777777666543 345666777777777777777777
Q ss_pred HHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 001618 141 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179 (1043)
Q Consensus 141 ~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 179 (1043)
+.+ . .+...+.++..+|.++...|++++|+..|++++
T Consensus 109 ~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 109 QQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred Hhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 552 1 122234556667777777777777777776653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=96.68 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=97.0
Q ss_pred cHHHHHHhHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HH
Q 001618 629 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 706 (1043)
Q Consensus 629 ~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 706 (1043)
+....+..+..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++.+|+..|+.+++.||.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 344555555554 5679999999999999999996643 3689999999999999999999999999999987665 99
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
+++.+|.++...|+++.|+.+|+++++.+|++..+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999999998754
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.8e-08 Score=78.83 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001618 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 183 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 183 (1043)
++.+|..+|.+++..|+|++|+..|.+++..+|++ ..+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777777777777777777777777 566777777777777 57777777777777766
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.3e-07 Score=93.95 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=90.7
Q ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHh
Q 001618 84 STWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 157 (1043)
Q Consensus 84 ~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~~ 157 (1043)
..++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|++++...|++ .+.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5677777766 56789999999999999999987 5789999999999999999999999999888875 3667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 189 (1043)
+|.++..+|+++.|+..|+++++..|++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 89999999999999999999999999876543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-07 Score=84.57 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHHhHHHHHHHcCCH
Q 001618 94 LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 94 ~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~~lg~~~~~~g~~ 168 (1043)
+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ...+++.++.+++..|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36788888988999999999988 5677889999999999999999999999987654 345678899999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001618 169 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 216 (1043)
++|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999998663 3334455667778888888887 778887777653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=93.76 Aligned_cols=148 Identities=13% Similarity=0.140 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001618 64 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 131 (1043)
Q Consensus 64 ~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g 131 (1043)
....|+.+|.+++ ..+|..+.++-.++.+++.. ....+|....++++..+|.|+.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999 99999999999999888765 24568889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH-HHHH-HHHHhhhHHhHHHHH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV-ALAV-MDLQANEAAGIRKGM 209 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~la~-~~~~~~~~~~~~~A~ 209 (1043)
+++.|+..|++++.++|+. +.+++..|......|+.++|...++++++++|....+-. .+.. +|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 788999999999999999999999999999997655433 2222 444443 67777
Q ss_pred HHHHHHH
Q 001618 210 EKMQRAF 216 (1043)
Q Consensus 210 ~~~~~al 216 (1043)
.+|-+--
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-05 Score=77.63 Aligned_cols=253 Identities=14% Similarity=0.060 Sum_probs=158.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Q 001618 268 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 347 (1043)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 347 (1043)
+-++-.|+|..++..-.+... .+........+...|+..|.+...+......- .....+...++.....-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 334455666666655544432 22334445556666777776655444332221 11233444455555545555
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 348 EKAQELLRKAAKI-DPRDAQAFIDL-GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 424 (1043)
Q Consensus 348 ~~A~~~~~~~l~~-~p~~~~~~~~l-a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 424 (1043)
+.-+.-+.+.+.. .......+..+ +.++ ..+++++|+........ .++...-..++.++.+++-|..
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----------LEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444443332 22222233333 3455 78888888877665322 3444444567778888888888
Q ss_pred HHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHh----cCChHHHH
Q 001618 425 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAAS 500 (1043)
Q Consensus 425 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 500 (1043)
.++++.+. +.-.++.+||..+.. .+.+..|.
T Consensus 159 ~lk~mq~i---------------------------------------------ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 159 ELKKMQQI---------------------------------------------DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred HHHHHHcc---------------------------------------------chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 88888763 223344445444432 34678888
Q ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHH-HHHHhhhcCC
Q 001618 501 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE-TFRAASDATD 579 (1043)
Q Consensus 501 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~~~ 579 (1043)
-+|+.+-...|..+......+.++..++++++|..+++.++..++++|+++.++..+-...|...++.. .+.+....+|
T Consensus 194 yifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 899998887888888999999999999999999999999999999999999999988888888765544 4444545555
Q ss_pred CCC
Q 001618 580 GKD 582 (1043)
Q Consensus 580 ~~~ 582 (1043)
.+.
T Consensus 274 ~h~ 276 (299)
T KOG3081|consen 274 EHP 276 (299)
T ss_pred cch
Confidence 543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-05 Score=79.67 Aligned_cols=277 Identities=13% Similarity=0.110 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 127 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~~g~~~~A~~~~~~~l~--~---~p----------~~~~a~~~la~~~ 127 (1043)
.|+.-.+++..+-.++-.+..+++..+.+ |+..|.+.- ...++.... . .| ++....+..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 45556666666655555554444555544 444444322 222222211 1 11 2345667778888
Q ss_pred HHcCChHHHHHHHHHHHHhCC----CChhHHHHhHHHHHHHcCCHHHHHHHHHHH---Hhh---CC--CcH---------
Q 001618 128 FNRGRYSDSLEFYKRALQVHP----SCPGAIRLGIGLCRYKLGQLGKARQAFQRA---LQL---DP--ENV--------- 186 (1043)
Q Consensus 128 ~~~g~~~~Al~~~~~~l~~~p----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---l~~---~p--~~~--------- 186 (1043)
+....|..|+.........-. .....+-+..-..+.....-++|+.++.-. +.. .| ++.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 888888888877665544321 111222233333344444455555443222 111 00 000
Q ss_pred ----------------HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 187 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 187 ----------------~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
.+...-...++...+ ..-+..-...+.....+.+.++...+..++..|+|.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122222222 4444444555555666788899999999999999999999886543
Q ss_pred hhc-CC---CCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------C-------CCCCChhhHHHHHHHHHH
Q 001618 251 AVT-NH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--------N-------KPHEFIFPYYGLGQVQLK 309 (1043)
Q Consensus 251 ~~~-~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~-------~~~~~~~~~~~la~~~~~ 309 (1043)
-.. .. .|. ....|.++|.+++..|.|.-+..+|.++++.. . .........++.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 111 00 111 23456889999999999999999999998511 0 112334568899999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Q 001618 310 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 344 (1043)
Q Consensus 310 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 344 (1043)
.|++-.|.++|.++...+-.+|..|..++.++...
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999989999999999988743
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.7e-06 Score=80.99 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=139.3
Q ss_pred chhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHH---H
Q 001618 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---L 551 (1043)
Q Consensus 478 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~ 551 (1043)
..+..+++-|...+..|++.+|+..|+.+...+|.. ..+.+.++.++.+.++++.|+..+++.+.+.|.++.+ +
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 356678888888888888888888888888877754 4567777777888888888888888888888777653 2
Q ss_pred HHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHH
Q 001618 552 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 631 (1043)
Q Consensus 552 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 631 (1043)
+..|.+ ++..+....++ ......|+..|+.++...|++.+
T Consensus 112 YlkgLs------------------------------------~~~~i~~~~rD----q~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 112 YLKGLS------------------------------------YFFQIDDVTRD----QSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHH------------------------------------HhccCCccccC----HHHHHHHHHHHHHHHHHCCCCcc
Confidence 233322 11111111111 14566788889999999999877
Q ss_pred HHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHH
Q 001618 632 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLY 710 (1043)
Q Consensus 632 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~ 710 (1043)
+-.... -+..+.... ...=..+|..|.+.|.+..|+.-++.+++.++..+. ...+..
T Consensus 152 a~dA~~--------------~i~~~~d~L--------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~ 209 (254)
T COG4105 152 APDAKA--------------RIVKLNDAL--------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALAR 209 (254)
T ss_pred hhhHHH--------------HHHHHHHHH--------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHH
Confidence 654322 222222211 223346788999999999999999999999876665 788899
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHhCCCCc
Q 001618 711 LARTHYEAEQWQDCKKSLLRAIHLAPSNY 739 (1043)
Q Consensus 711 la~~~~~~g~~~~A~~~~~ka~~~~P~~~ 739 (1043)
+..+|+..|-.++|.+.-.-+-.-.|+++
T Consensus 210 l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 210 LEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999877665555556665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-06 Score=99.63 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=115.4
Q ss_pred cCCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 001618 78 IDMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRAL 144 (1043)
Q Consensus 78 ~~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~~l 144 (1043)
.-|.++.+ ++..|..++..+. +..|+.+|++++..+|++..++..++.++.... +...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555544 4567888877655 889999999999999999999998888776543 2345555566655
Q ss_pred Hh--CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 145 QV--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 145 ~~--~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
.. +|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ +++|+..|.+++.++|..
T Consensus 412 al~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 412 ALPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hcccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC
Confidence 54 5555 46788888888899999999999999999999 57899999999999999 999999999999999998
Q ss_pred HH
Q 001618 223 AM 224 (1043)
Q Consensus 223 ~~ 224 (1043)
+.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 85
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.9e-08 Score=76.72 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 88 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777777777777777777777777777777777765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-05 Score=96.59 Aligned_cols=217 Identities=13% Similarity=0.106 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--CchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 207 KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--TKSHSYYNLARSYHSKGDYEKAGLYYM 284 (1043)
Q Consensus 207 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 284 (1043)
+....|.+.+..+|+....|......+...++.+.|.+++++++...+... .....|..+-.....-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344567777777888888887777777888888888888888876543222 123345555555555566667777777
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 001618 285 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR- 363 (1043)
Q Consensus 285 ~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~- 363 (1043)
++.+. -+...++..|..+|...+++++|.++|+.+++.......+|..++..+++.++-+.|..++.++++.-|.
T Consensus 1522 RAcqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 77752 2334567778888888888888888888888877777788888888888888888888888888887777
Q ss_pred -CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 364 -DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 364 -~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
+.......+.+- ..|+.+.+..+|+..+...|+ ..++|+.+...-...|+..-+..+|++++.+
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-----RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-----RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-----chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 566666667766 788888888888877776655 3567777777778888888888888888774
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.5e-08 Score=82.86 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 63 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
++|+.|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ +..+|.++...+.+|.+++.+|+|++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5788999999999999995 466788899999999999999999999 8888888899999999999999999999999
Q ss_pred HHH
Q 001618 141 KRA 143 (1043)
Q Consensus 141 ~~~ 143 (1043)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.7e-07 Score=87.12 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=77.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Q 001618 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 336 (1043)
Q Consensus 257 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 336 (1043)
+....+++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+..+.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34456677888888888888888888888876433333345677888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH--------------HHHHHHHHHHHHhCCCC
Q 001618 337 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 364 (1043)
Q Consensus 337 la~~~~~~g~~--------------~~A~~~~~~~l~~~p~~ 364 (1043)
+|.++...|+. .+|+.++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888877763 44555555555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-07 Score=94.77 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=87.8
Q ss_pred hHHHHHcCCHHHHHHHHHhcCCcchhhh-hhc-----cHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHH
Q 001618 2 QREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 75 (1043)
Q Consensus 2 A~~y~~~g~~~~a~~~l~~~~~~~~~~~-~~~-----~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 75 (1043)
+..||+.|+|..|....++++..=...+ +++ ...-++.++.+|+.+|+.+..+. .|+..++++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai~~c~kv 283 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAIESCNKV 283 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHHHHHHHH
Confidence 4689999999999999888754210000 000 11233455666666666665333 777777777
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCC
Q 001618 76 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHP 148 (1043)
Q Consensus 76 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A-l~~~~~~l~~~p 148 (1043)
|..+|+|+.++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+.+. .+.|..++..-+
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777777777777777777777777777777777777777776666666666655554443 566666665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=92.69 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRD---------------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.-..|..|++.|+|..|...|++++..-+. -..+++.+|.|+.+++.|..|+..+.++|..+|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345688999999999999999998775321 12456667777777777777777777777777777
Q ss_pred hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001618 151 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 219 (1043)
Q Consensus 151 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 219 (1043)
.-++|..|.++..+|+++.|+..|+++++++|+|..+...|..+..+... ........|.+++..-
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKL 356 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence 55567777777777777777777777777777777666666665555433 1223345555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.6e-07 Score=78.31 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001618 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198 (1043)
Q Consensus 119 a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 198 (1043)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|++++|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46677777888888888888888888887777 46677788888888888888888888888888777777778877777
Q ss_pred hhhHHhHHHHHHHHHHHHHhCC
Q 001618 199 ANEAAGIRKGMEKMQRAFEIYP 220 (1043)
Q Consensus 199 ~~~~~~~~~A~~~~~~al~~~p 220 (1043)
.|+ +..|...+..++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 777 7777777777776665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=93.09 Aligned_cols=209 Identities=14% Similarity=0.088 Sum_probs=135.7
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhh
Q 001618 371 LGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 448 (1043)
Q Consensus 371 la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (1043)
.|.+| ..+++++|...|.++.......+.... ...+...+.++... ++++|+.+|++++......+
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G----------- 108 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG----------- 108 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-----------
Confidence 35566 667777777777777766655433222 34555556665444 89999999999887431100
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhc-CChHHHHHHHHHHHHhCcC------cHHHHHHHH
Q 001618 449 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLA 521 (1043)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la 521 (1043)
....-..++..+|.+|... |+++.|+.+|++++..... ...++..++
T Consensus 109 --------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 109 --------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 1123466888999999999 9999999999999985421 256788999
Q ss_pred HHHHHcCChhHHHHHHHHHHHHcCCCh-------HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCC--Ch--HHHHHhh
Q 001618 522 AIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVKAKETFRAASDATDGK--DS--YATLSLG 590 (1043)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~--~~--~~~~~lg 590 (1043)
.++...|++++|+..|++.....-.++ ..+...+.+++..|++..|...|++.....|.- +. .....|.
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 999999999999999999887542211 245567778999999999999999998876531 11 1222222
Q ss_pred hHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc
Q 001618 591 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 628 (1043)
Q Consensus 591 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 628 (1043)
.. | .... ...+..|+.-|+.+-+++|-
T Consensus 243 ~A-~----~~~D------~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 243 EA-Y----EEGD------VEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HH-H----HTT-------CCCHHHHCHHHTTSS---HH
T ss_pred HH-H----HhCC------HHHHHHHHHHHcccCccHHH
Confidence 22 1 1111 15688888888877766654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.002 Score=69.32 Aligned_cols=197 Identities=14% Similarity=0.066 Sum_probs=129.3
Q ss_pred hcCChHHHHHHHHHHHHhC------cCcH--------HHHHHHHHHHHHcCChhHHHHHHHHHHHHc---CC-------C
Q 001618 492 QIHDTVAASVLYRLILFKY------QDYV--------DAYLRLAAIAKARNNLQLSIELVNEALKVN---GK-------Y 547 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~~------p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~ 547 (1043)
-.|-+++|.++-.+++... |... ..+-.++.+-.-.|++.+|+.-+..+.... |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 3466677777766666532 1111 223344455566799999988877776654 44 2
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHH--HhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHcc
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 625 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 625 (1043)
+.+...+|......+-++.|...|..+.+.....+..+.+ .++.+ |... ++-+. +|+-.-.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~ed---~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDAED---LYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccHHH---HHHHHHhc
Confidence 3466677777777888999999999999987776665443 45555 6665 33322 22222223
Q ss_pred Cccc----------HHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCC-CCchhHHHhHHHHHHHccCHHHHHHHHHH
Q 001618 626 HTSN----------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQN 694 (1043)
Q Consensus 626 ~P~~----------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 694 (1043)
.|.| ..+++..|.....++++.+|...+.+.++.....++ .-..-.+..||++....|+..++.....-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 4432 123455577777899999999999999887521111 01234566789999999999999999988
Q ss_pred HHHHhcCCCC
Q 001618 695 CLRKFYYNTD 704 (1043)
Q Consensus 695 al~~~~~~~~ 704 (1043)
++......+|
T Consensus 511 amqlAkKi~D 520 (629)
T KOG2300|consen 511 AMQLAKKIPD 520 (629)
T ss_pred HHHHHhcCCC
Confidence 8887666666
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00024 Score=74.01 Aligned_cols=278 Identities=19% Similarity=0.156 Sum_probs=136.3
Q ss_pred HHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
.|.+.-.+..+.-..+ +.+++.-++..+..|+++.|.+-|+-++. +|. -...+.++-.-..+.|.++.|+.+-..+
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4444444443332332 33444456667777777777777777664 222 1112222222233567777777777777
Q ss_pred HHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh---CCCcH---HHHHH--HHHHHHHhhhHHhHHHHHHHHHHH
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL---DPENV---EALVA--LAVMDLQANEAAGIRKGMEKMQRA 215 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~---~a~~~--la~~~~~~~~~~~~~~A~~~~~~a 215 (1043)
...-|.. ...+...-......|+++.|++..+..... .++-. .+-+. -+...+ ..+ ...|...-..+
T Consensus 181 a~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad---p~~Ar~~A~~a 255 (531)
T COG3898 181 AEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD---PASARDDALEA 255 (531)
T ss_pred HhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC---hHHHHHHHHHH
Confidence 7777777 444444555566677777777776655432 22211 11111 111111 112 45566666666
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 001618 216 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 295 (1043)
Q Consensus 216 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 295 (1043)
+++.|+.......-+..++..|+..++-++++.+.+..++ | .++..|....--+.++.-++++.......++
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P-------~ia~lY~~ar~gdta~dRlkRa~~L~slk~n 327 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-P-------DIALLYVRARSGDTALDRLKRAKKLESLKPN 327 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-h-------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCcc
Confidence 6667766666666666666666666666666666644321 1 1122222222222233333333222223344
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 001618 296 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAK 359 (1043)
Q Consensus 296 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~ 359 (1043)
+....+.++...+..|++..|...-+.+....|. ..++..++.+-... |+-.++...+-++++
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4444555555555555555555555555444443 22333333333322 555555555444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=99.90 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 131 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~~l~~--~p~~~~a~~~la~~~~~~g 131 (1043)
.+.+..|+.+|+++++.+|+++.++..++.++.... +...+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 346779999999999999999999999888776643 345566666666664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 188 (1043)
++++|...|++++.++|+ ...+..+|.++...|++++|...|++++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999995 4689999999999999999999999999999998753
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00021 Score=74.79 Aligned_cols=120 Identities=24% Similarity=0.316 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 63 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
..+..+...+..+....+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555555544443 244445555555555555555555555554 344445555555555555555555555
Q ss_pred HHHHHHHhCCCChhHHHHhHHH-HHHHcCCHHHHHHHHHHHHhhCC
Q 001618 139 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 139 ~~~~~l~~~p~~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
.+..++...+.. .......+. ++...|+++.|...|.+++..+|
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555555544443 222233333 45555555555555555544443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0048 Score=71.97 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=85.5
Q ss_pred HHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
-.-..|.-+...|.|+.|.-+|.. +.-|..|+..+..+|++..|....+++ ++..+|-.........
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDK 1262 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhch
Confidence 344566667777888888877765 566778888888888988888887775 4456676666666666
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHH
Q 001618 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~ 641 (1043)
+.+.-|.-+=-.++-.. .-+-.+.+. |... |.+++-+.+++..+-+.......+..||++|.
T Consensus 1263 ~EFrlAQiCGL~iivha-----deLeeli~~-Yq~r------------GyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHA-----DELEELIEY-YQDR------------GYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred hhhhHHHhcCceEEEeh-----HhHHHHHHH-HHhc------------CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 65555543322111111 111223333 4444 88888888888888877777777777888777
Q ss_pred hc
Q 001618 642 EK 643 (1043)
Q Consensus 642 ~~ 643 (1043)
+-
T Consensus 1325 ky 1326 (1666)
T KOG0985|consen 1325 KY 1326 (1666)
T ss_pred hc
Confidence 54
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=91.96 Aligned_cols=107 Identities=16% Similarity=0.258 Sum_probs=81.7
Q ss_pred HHHHhHHHHHhc-CCchHHHHHHHHHHHHhcCCCC-CCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-----
Q 001618 632 AANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----- 704 (1043)
Q Consensus 632 a~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 704 (1043)
++..+|.+|... |+++.|+.+|+++.+.+..... .....++.++|.++...|+|.+|+..|+++.......+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 345668888888 9999999999999998754321 123567889999999999999999999999886533221
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 705 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 705 ~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
...++..+.+++..|++..|...+++....+|+-
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2456678889999999999999999999998853
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=74.50 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=45.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 186 (1043)
.+|..++..|+|++|+..|++++..+|.+ ..+++.+|.|+..+|++++|+..|++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45677777777777777777777777776 56677777777777777777777777777777653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00034 Score=73.21 Aligned_cols=227 Identities=30% Similarity=0.388 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChhHHHHhHHHHHHHcCCHHHHH
Q 001618 97 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 172 (1043)
Q Consensus 97 g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~--~~p~~~~~~~~~lg~~~~~~g~~~~A~ 172 (1043)
+.+..+...+..++...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+.+..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 44455555555555544432 44444455555555555555555555544 23333 334444555555555555555
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001618 173 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 252 (1043)
Q Consensus 173 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 252 (1043)
..+..++...+.........+. + ++...|++..+...+..++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~-~~~~~~~~~~a~~~~~~~~~~ 159 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLAL-----------------------------------G-ALYELGDYEEALELYEKALEL 159 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHH-----------------------------------H-HHHHcCCHHHHHHHHHHHHhc
Confidence 5555555444443222222222 0 444444444444444444321
Q ss_pred cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q 001618 253 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331 (1043)
Q Consensus 253 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 331 (1043)
.+........+...+..+...+++..|+..+..++. ..+. ....+..++..+...+.+..|+..+..++...|...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (291)
T COG0457 160 DPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA 236 (291)
T ss_pred CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH
Confidence 100012233444444446666677777777776665 2233 355566677777777777777777777777776655
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363 (1043)
Q Consensus 332 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 363 (1043)
..+..++..+...+.+..+...+.+++...|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 237 EALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666666666556677777777777776665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-06 Score=85.10 Aligned_cols=106 Identities=24% Similarity=0.364 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH
Q 001618 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 338 (1043)
Q Consensus 259 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 338 (1043)
....++.+|.++...|++++|+..|.+++...+.++....++..+|.++...|++++|+..|++++.+.|.....+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45678888999999999999999999998654333334567889999999999999999999999999888888888888
Q ss_pred HHHH-------HcCCHHHH-------HHHHHHHHHhCCCC
Q 001618 339 HIYV-------QLGQIEKA-------QELLRKAAKIDPRD 364 (1043)
Q Consensus 339 ~~~~-------~~g~~~~A-------~~~~~~~l~~~p~~ 364 (1043)
.++. ..|++..| +.+|++++..+|.+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8888 55665533 44444444445543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=77.30 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hhHHHH
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 156 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~--~~~~~~ 156 (1043)
.+..++..|...+..|+|..|++.|+.+....|.. ..+.+.++.+++..++|.+|+..+++.++++|.+ ...+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45688899999999999999999999999988765 5788999999999999999999999999999987 356678
Q ss_pred hHHHHHHHcCC
Q 001618 157 GIGLCRYKLGQ 167 (1043)
Q Consensus 157 ~lg~~~~~~g~ 167 (1043)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888887654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-06 Score=85.08 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 001618 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 305 (1043)
Q Consensus 226 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~ 305 (1043)
.+..|.-++..|+|..|...|...++..+.++..+.++||||.+++.+|+|..|..+|..+.+.++..+..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45555555666666666666666666666666666677777777777777777777777777666666666666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLK 335 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 335 (1043)
++..+|+.++|...|+++++.+|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 777777777777777777666666554433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7e-08 Score=97.54 Aligned_cols=242 Identities=13% Similarity=0.048 Sum_probs=146.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
-..|..|+.+|.|++|+.+|.+.+..+|.|+..+...|.+|++.+.|..|...+..++.++... ..+|...|.+-..+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLG 179 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHh
Confidence 3467777777777777777777777777777777777777777777777777777777776655 455666777777777
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 246 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (1043)
...+|..-++.+|.+.|++.+....++.+..-. ++ .-+.+.-|....+.. -.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~-------E~----~I~~KsT~G~~~A~Q-----------------~~ 231 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLR-------ER----KIATKSTPGFTPARQ-----------------GM 231 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH-------hh----hHHhhcCCCCCcccc-----------------ch
Confidence 777777777777777777655444433322110 00 000011111110000 00
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001618 247 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 326 (1043)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 326 (1043)
.+++ ..-.-|..+...|.++.++..|...+... ..+...... +..+.+.-+++.++.-..+.+..
T Consensus 232 ~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~---~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~ 296 (536)
T KOG4648|consen 232 IQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATI---DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP 296 (536)
T ss_pred hhhc-----------cccCcchhhhhhhccccceeEeecccccc---CccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence 0000 11223555667777777777776655422 222222222 56677777888888877777776
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001618 327 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372 (1043)
Q Consensus 327 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 372 (1043)
.|.........+.+-.-.|...++...++.++.+.|.+......+.
T Consensus 297 ~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~s 342 (536)
T KOG4648|consen 297 KPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETET 342 (536)
T ss_pred CCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhh
Confidence 6665555555555555566777788888888888777655444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=80.14 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=93.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001618 112 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191 (1043)
Q Consensus 112 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 191 (1043)
+.++.....+..|.-++..|++++|..+|+-+...+|.+ ...++++|.|+..++++++|+..|..+..++++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 444556788899999999999999999999999999998 6778999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001618 192 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 223 (1043)
Q Consensus 192 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 223 (1043)
.|.+++..|+ ...|+..|..++. .|.+.
T Consensus 111 agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 9999999998 8899999988887 44443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00072 Score=70.63 Aligned_cols=293 Identities=17% Similarity=0.125 Sum_probs=196.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 200 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~~l~~-~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 200 (1043)
..|.+..-.|+-..|.+.-.+.-.+ ..+..+.+++.-+..-.-.|+++.|..-|+.++. +|.. -+..|-.+|+...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt--RllGLRgLyleAq 165 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET--RLLGLRGLYLEAQ 165 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH--HHHhHHHHHHHHH
Confidence 3445555667777777776666533 2333455566666677777777777777777664 3322 1233334444443
Q ss_pred hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc---hHH--HHHHHHHHHHcCC
Q 001618 201 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHS--YYNLARSYHSKGD 275 (1043)
Q Consensus 201 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~--~~~la~~~~~~g~ 275 (1043)
..+..+.|+.+-..+...-|.-+-++.......+..|+++.|+++.+......-..+.. ..+ +...+.... .-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC
Confidence 34447777778888888888877777777777788888888888887766433222221 111 222222222 234
Q ss_pred HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001618 276 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355 (1043)
Q Consensus 276 ~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 355 (1043)
...|...-..+.+ ..|+...+-..-+..++..|+..++-.+++.+.+..|. +.++ +..++.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia--~lY~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIA--LLYVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHH--HHHHHhcCCC--cHHHHHH
Confidence 6677777777776 67888888889999999999999999999999998875 3332 2223444554 3444444
Q ss_pred ---HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 001618 356 ---KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDAL 430 (1043)
Q Consensus 356 ---~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 430 (1043)
++..+.|++....+..+..- ..|++..|...-+.+....|. ..++..++.+-... |+-.++..++-+++
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 44456799999999998877 899999988877777766544 46677778776655 99999999999998
Q ss_pred cc
Q 001618 431 GD 432 (1043)
Q Consensus 431 ~~ 432 (1043)
..
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 75
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-06 Score=75.86 Aligned_cols=111 Identities=12% Similarity=0.189 Sum_probs=98.1
Q ss_pred cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHH
Q 001618 629 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 707 (1043)
Q Consensus 629 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 707 (1043)
.+..++.-|.-....|+|.+|+..|+.+...+|.+.+ ...+.+.||.+|+..|++.+|+..+++.++.+|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4566778888899999999999999999999998765 4589999999999999999999999999999888877 889
Q ss_pred HHHHHHHHHhhhc---------------HHHHHHHHHHHHHhCCCCcch
Q 001618 708 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 708 l~~la~~~~~~g~---------------~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
++..|.+++.... ...|...|++++...|++.-+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999998876 778999999999999988654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.1e-06 Score=90.48 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHH
Q 001618 96 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 175 (1043)
Q Consensus 96 ~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 175 (1043)
.++++.|+.+|+++.+.+|. +...++.++...++-.+|+.++.+++..+|.+ ...+...+..+...++++.|+.+.
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34455555555554444432 23334444444445555555555555555544 344444455555555555555555
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001618 176 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 213 (1043)
Q Consensus 176 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 213 (1043)
++++...|++...|..|+.+|...|+ ++.|+..++
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGD---FENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHh
Confidence 55555555555555555555555554 555554444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0046 Score=65.94 Aligned_cols=424 Identities=12% Similarity=0.025 Sum_probs=226.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 71 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 71 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+..-++.+|++...|+.+...+-.+|.+++-.+.++++..-.|--+.+|......-...++|..-..+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45666788999999999999999999999999999999999888888888777666677789999999999998765443
Q ss_pred hhHHHHhHHHHHHHcC-----C----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh------HHhHHHHHHHHHHH
Q 001618 151 PGAIRLGIGLCRYKLG-----Q----LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 215 (1043)
Q Consensus 151 ~~~~~~~lg~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~a 215 (1043)
..|...-..-.+.+ + .-+|.+..-.+.-.+|.....|...+..+..-.. ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33332222222221 1 1223332222333567777777776665543221 11244455566666
Q ss_pred HHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----
Q 001618 216 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---- 291 (1043)
Q Consensus 216 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---- 291 (1043)
+...-.+..-+ -.+|+.-..-++++-...-. .. ..--|-.|...|++......
T Consensus 188 l~tP~~nlekl---------W~dy~~fE~e~N~~TarKfv-ge-------------~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 188 LQTPMGNLEKL---------WKDYENFELELNKITARKFV-GE-------------TSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred HcCccccHHHH---------HHHHHHHHHHHHHHHHHHHh-cc-------------cCHHHHHHHHHHHHHHHHhccccc
Confidence 65443332111 11222211111111110000 00 00012233333333322110
Q ss_pred CCCCCh-----------hhHHHHHHHHHHc-----CC-HHH-HHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001618 292 KPHEFI-----------FPYYGLGQVQLKL-----GD-FRS-ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353 (1043)
Q Consensus 292 ~~~~~~-----------~~~~~la~~~~~~-----g~-~~~-A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 353 (1043)
.+|.+. .-|+++...-... |+ ... ---.+++++...|-.+++|+.........++-+.|+..
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~t 324 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKT 324 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHH
Confidence 001000 0122222211111 11 111 12245556666666777777777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 001618 354 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSFKDA 429 (1043)
Q Consensus 354 ~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a 429 (1043)
..+.+...|. ....++.+| ...+.+....+|+++...+... +.++..-.. -|+++...+++-+-
T Consensus 325 v~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 325 VERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHHHHHHH
Confidence 6666555554 556666677 5555555555565554432221 000000000 11121111111100
Q ss_pred HcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHh
Q 001618 430 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 509 (1043)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 509 (1043)
+ .....++..+...-.+..-.+.|..+|.++-+.
T Consensus 393 ~----------------------------------------------~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 393 I----------------------------------------------NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred H----------------------------------------------hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 0 011223333333333444466777777776654
Q ss_pred CcCcHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 510 YQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 510 ~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
.--...+|..-|.+ +...|++.-|..+|+-.+...|+++.....+-..++..++-..|...|++++..
T Consensus 427 ~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 427 GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 32223444444433 456788888999999999999998887777777888888888899999877654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=72.40 Aligned_cols=97 Identities=27% Similarity=0.330 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChhHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS---CPGAIRL 156 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~---~~~~~~~ 156 (1043)
+.++|.+|.++-..|+.++|+.+|++++...+.. ..+++.+|.++...|++++|+.++++.+...|+ + ..+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~-~~l~~ 79 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN-AALRV 79 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHH
Confidence 3578899999999999999999999999875443 568899999999999999999999999998887 4 56677
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHh
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQ 180 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~ 180 (1043)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 789999999999999998887764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0096 Score=66.74 Aligned_cols=184 Identities=15% Similarity=0.109 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 409 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 409 (1043)
...|......-...|++....-.|++++--.......|+..+... ..|+..-+-..+..+.++... ..+.+...-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k----~~~~i~L~~ 372 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK----KTPIIHLLE 372 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC----CCcHHHHHH
Confidence 355666666667777888888888777766666677777777777 667777766666666555332 234555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHH
Q 001618 410 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 489 (1043)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 489 (1043)
+.+.-..|++..|...|+..... . |....+-...+..
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e------------------------------------------~-pg~v~~~l~~~~~ 409 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESE------------------------------------------Y-PGLVEVVLRKINW 409 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhh------------------------------------------C-CchhhhHHHHHhH
Confidence 66666777777777777777653 2 4455555555555
Q ss_pred HHhcCChHHHHH---HHHHHHHh--CcC-cHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 490 LEQIHDTVAASV---LYRLILFK--YQD-YVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 490 ~~~~g~~~~A~~---~~~~~l~~--~p~-~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
....|+.+.+.. ++.....- ++. ....+...+.. +.-.++.+.|...+.+++...|.+...+..+..+....
T Consensus 410 e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 410 ERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 666666666663 22222221 111 12223333332 33456677777777777777777777766666554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.5e-05 Score=73.53 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=123.8
Q ss_pred CChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CCChHHHHHHHHHhhhccchHHHHHHHH
Q 001618 494 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFR 572 (1043)
Q Consensus 494 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (1043)
...+..+..+++-+ ..+.+.++.++.-.+.|.-.+..+++.++.+ |..|.....+|.+.++.|+.+.|..+|+
T Consensus 163 ~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 163 LAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred cchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33455666666644 3456667777788888888888888888888 6677888889999999999999998888
Q ss_pred HhhhcCCC-----CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCch
Q 001618 573 AASDATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 647 (1043)
Q Consensus 573 ~~l~~~~~-----~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~ 647 (1043)
.+-+.... ...-...+.+.+ |.-. +++..|...|.+++..+|.++.+.++.|.|+.-.|+..
T Consensus 237 ~vek~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 237 DVEKVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred HHHHHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 55432211 122333344444 5555 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHhHHHH
Q 001618 648 VSKDLFTQVQEAASGSVFVQMPDVWINLAHV 678 (1043)
Q Consensus 648 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~ 678 (1043)
.|+..++.+.+..|+... +..+.+||-.+
T Consensus 304 DAiK~~e~~~~~~P~~~l--~es~~~nL~tm 332 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHYL--HESVLFNLTTM 332 (366)
T ss_pred HHHHHHHHHhccCCccch--hhhHHHHHHHH
Confidence 999999999999986532 34456666544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.011 Score=66.22 Aligned_cols=187 Identities=9% Similarity=-0.045 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
...|......-...|+++...-.|++++--| ......
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-------------------------------------------A~Y~ef 333 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-------------------------------------------ALYDEF 333 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-------------------------------------------hhhHHH
Confidence 3556666677778899999999999988643 246678
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhc
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 561 (1043)
|...++.....|+..-|...+..+.+.+ |..+...+.-+.+....|++..|...++...+..|+...+-.....+..+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 8888888888899999988887777654 666777788888888889999999999999998899888888888888888
Q ss_pred cchHHHHH---HHHHhhhcCCCCChHH--HHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHh
Q 001618 562 DDWVKAKE---TFRAASDATDGKDSYA--TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 636 (1043)
Q Consensus 562 g~~~~A~~---~~~~~l~~~~~~~~~~--~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~l 636 (1043)
|+.+.+.. .+.....-..+..... ++......|... ++.+.|...+.+++...|.+...+..+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 88888873 3333322211112211 111122212222 788889999999999999888877777
Q ss_pred HHHHHhcC
Q 001618 637 GVVLAEKG 644 (1043)
Q Consensus 637 a~~~~~~g 644 (1043)
..+....+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 66665443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-06 Score=70.27 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=27.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 95 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 95 ~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
..|++++|+..|++++..+|++..+++.+|.+++..|++++|..++.+++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444445555554444444444444444444444444444444444444444443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-06 Score=70.18 Aligned_cols=64 Identities=34% Similarity=0.563 Sum_probs=33.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001618 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193 (1043)
Q Consensus 129 ~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 193 (1043)
..|+|++|+..|++++..+|++ ..+++.+|.|++..|++++|...+.+++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555 444555555555555555555555555555555544444443
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-05 Score=87.06 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=105.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001618 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 202 (1043)
Q Consensus 123 la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 202 (1043)
+..++...++++.|+.+|+++...+|+. ...++.++...++..+|+..+.+++...|.+...+...+..++..++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~- 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK- 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-
Confidence 3444556688999999999998888763 45588888889999999999999999999999999999999999988
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001618 203 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250 (1043)
Q Consensus 203 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 250 (1043)
++.|+.+.++++...|.+...|..|+.+|...|+++.|+-.++.+-
T Consensus 250 --~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 --YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred --HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8999999999999999999999999999999999999998887653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.024 Score=68.18 Aligned_cols=472 Identities=15% Similarity=0.101 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHhCCC----cHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCCCC---chHHHHHHHHHHHHcCCH
Q 001618 205 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGPT---KSHSYYNLARSYHSKGDY 276 (1043)
Q Consensus 205 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~la~~~~~~g~~ 276 (1043)
+..|+.+++-+++..+- ...+...+|.+++ ...+++.|...+.+++.....+.. ...+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44566666666642211 2345666676666 677777788777777655443111 134456667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCChhh-HHHH--HHHHHHcCCHHHHHHHHHHHHHHC--CCcHH----HHHHHHHHHHHcCCH
Q 001618 277 EKAGLYYMASVKEINKPHEFIFP-YYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 347 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~~~~~~~-~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 347 (1043)
. |+..+.+.+......+..... .+.+ ...+...+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 888888887754432222211 1111 223333478888888888877654 23332 223345566666777
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------------
Q 001618 348 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 401 (1043)
Q Consensus 348 ~~A~~~~~~~l~~~----------p~~~~~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 401 (1043)
+.++..+.++.... +....+|..+..+. ..|++..+...++..-..+.......
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777777764321 12234454444433 56666666555544443332211110
Q ss_pred ------------c------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHh
Q 001618 402 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 457 (1043)
Q Consensus 402 ------------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (1043)
. .-++..-|......+..+.|..++.+++..-....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~-------------------- 335 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK-------------------- 335 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--------------------
Confidence 0 11222234455566666678888877776311000
Q ss_pred hhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHH
Q 001618 458 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537 (1043)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (1043)
. . .....+...... ..-..++..+. ..+.+..+.+.+..+++..|...+
T Consensus 336 --------~-~---~~~~~~~sl~~~-------------~~~~~~~~~l~------~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 336 --------I-K---SPSAPSESLSEA-------------SERIQWLRYLQ------CYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred --------c-c---CCCCCCcCHHHH-------------HHhHHHHHHHH------HHHHHHHHHHHHHCcCHHHHHHHH
Confidence 0 0 000000000000 00011111110 234455566666778887777777
Q ss_pred HHHHHHc---CC------ChHHHHHHHHHhhhccchHHHHHHHH--------HhhhcCCCCChHHHHHhhhHHHHHHHhh
Q 001618 538 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 600 (1043)
Q Consensus 538 ~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~l~~~~~~~~~~~~~lg~~~y~~~~~~ 600 (1043)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+. ..|. +.-. ..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila-~LNl-~~I~-~~ 461 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA-ALNL-AIIL-QY 461 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH-HHHH-HHHh-Hh
Confidence 7666543 22 36678888888888899999999997 343444444443332 2222 1111 11
Q ss_pred cccChhHHhhhHHHHHHHHHHHHccCcc-c-HHHHHHhHHHHH--hcCCchHHHHHHHHHHHHh-cCCCCCC-chhHHHh
Q 001618 601 EKRAPKLEATHLEKAKELYTRVIVQHTS-N-LYAANGAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MPDVWIN 674 (1043)
Q Consensus 601 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~-~~a~~~la~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~~~~~~ 674 (1043)
+..... ...+....+...+......|+ + ..++..+..++. ..-...++...+...++.. ....... ..-++.-
T Consensus 462 ~~~~~~-~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 462 ESSRDD-SESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred hcccch-hhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 110000 000133333333333333333 2 222222222222 1223347777777776665 2211111 2234555
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHH-----HHHHHHHhhhcHHHHHHHHHHHHH
Q 001618 675 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 733 (1043)
Q Consensus 675 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~-----~la~~~~~~g~~~~A~~~~~ka~~ 733 (1043)
+++.++ .|...+.......+.......++ ..+|. .+...+...|+.++|.....+...
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777 78888877777777765544433 34443 344556668999998887776643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=71.60 Aligned_cols=97 Identities=27% Similarity=0.266 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKALG 338 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la 338 (1043)
+.+.+|.++-..|+.++|+.+|++++......+....+++.+|..+...|++++|+..++..+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45555666666666666666666665432222333445555666666666666666666666655555 445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 001618 339 HIYVQLGQIEKAQELLRKAA 358 (1043)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~l 358 (1043)
.++...|+.++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 56666666666665555444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=75.52 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----hHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 120 ~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
+-.-|.-+|..|+|.+|..-|..+|...|..+ ..++.+.|.|+++++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33445666777777777777777777776652 33455667777777777777777777777777777777777777
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001618 196 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 229 (1043)
Q Consensus 196 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 229 (1043)
|-+... +++|+..|.+++..+|....+.-.+
T Consensus 178 yek~ek---~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 178 YEKMEK---YEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHhhhh---HHHHHHHHHHHHHhCcchHHHHHHH
Confidence 777665 7777777777777777666544433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.3e-06 Score=68.48 Aligned_cols=60 Identities=33% Similarity=0.475 Sum_probs=30.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 91 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 91 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+|+..++|+.|+.+++.++..+|.++..++.+|.+++..|++.+|+..|++++...|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 344445555555555555555555555555555555555555555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00029 Score=65.85 Aligned_cols=148 Identities=15% Similarity=0.133 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhh
Q 001618 531 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 610 (1043)
Q Consensus 531 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~ 610 (1043)
+....-..+.+...|.. .-.+.++..+...|++.+|...|.+++.-.-.++...++.+++. .+.. +
T Consensus 73 ~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~------------~ 138 (251)
T COG4700 73 ERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI------------Q 138 (251)
T ss_pred hHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh------------c
Confidence 33333334444444442 23456666667777777777777776665444566666666666 5555 6
Q ss_pred hHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHH
Q 001618 611 HLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688 (1043)
Q Consensus 611 ~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 688 (1043)
++..|...++++.+.+|. .+.....+|.++...|.+..|...|+.++.-+| .+......+..+..+|+..+|
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchhHH
Confidence 666677777766666665 445555666667777777777777777776665 345555666666666766666
Q ss_pred HHHHHHHHHH
Q 001618 689 MKMYQNCLRK 698 (1043)
Q Consensus 689 ~~~~~~al~~ 698 (1043)
..-|..+.+.
T Consensus 213 ~aq~~~v~d~ 222 (251)
T COG4700 213 NAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHHH
Confidence 6665555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.1e-07 Score=89.67 Aligned_cols=224 Identities=9% Similarity=-0.059 Sum_probs=149.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhH
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 486 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 486 (1043)
-..|.-|+.+|+|++|+.+|.+++. ..|.++..+.+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia-------------------------------------------~~P~NpV~~~NR 137 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIA-------------------------------------------VYPHNPVYHINR 137 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhc-------------------------------------------cCCCCccchhhH
Confidence 3468899999999999999999987 567889999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccc---
Q 001618 487 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD--- 563 (1043)
Q Consensus 487 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--- 563 (1043)
|..|+++..|..|..-+..++.++..+..+|.+.+.+-..+|...+|.+.++.++.+.|.+.++.-.++.+-.-...
T Consensus 138 A~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 138 ALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999988876666554321000
Q ss_pred ------hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhH
Q 001618 564 ------WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 637 (1043)
Q Consensus 564 ------~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la 637 (1043)
+-.|.....+++.. -.-|+. |+.. +.+..++..|..-+..+..+...-.+ +
T Consensus 218 ~KsT~G~~~A~Q~~~Q~l~~---------K~~G~~-Fsk~------------~~~~~~i~~~~~~~A~~~~~~~L~~~-~ 274 (536)
T KOG4648|consen 218 TKSTPGFTPARQGMIQILPI---------KKPGYK-FSKK------------AMRSVPVVDVVSPRATIDDSNQLRIS-D 274 (536)
T ss_pred hhcCCCCCccccchhhhccc---------cCcchh-hhhh------------hccccceeEeeccccccCccccCccc-H
Confidence 11111111111111 112333 4444 66777777666555444333222222 4
Q ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcC
Q 001618 638 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 701 (1043)
Q Consensus 638 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 701 (1043)
..+.+.-++..|+.--.+.....|. ........|..-.-.|...++...++.++..-|.
T Consensus 275 ~~~~KI~~~~~~~~~~~~~~~~~~s-----~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~ 333 (536)
T KOG4648|consen 275 EDIDKIFNSNCGIIEEVKKTNPKPT-----PMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPA 333 (536)
T ss_pred HHHHHHhhcchhHHHHHHhcCCCCC-----cCcccCCCchhHHHHhhhhhcCcchhheeeeccc
Confidence 4444555566665544444433321 1112223344444456666777777777766443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00044 Score=75.65 Aligned_cols=116 Identities=20% Similarity=0.096 Sum_probs=82.0
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 73 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 73 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
..+++.+|.+...+..-+..+..+|+.-+|+.++..++-..|.. -.+++.+|.++.+.|...+|--++..++.-.|..
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 44555566555444444444455788888888888888776654 3467788888888888888877777776666655
Q ss_pred hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001618 151 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189 (1043)
Q Consensus 151 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 189 (1043)
...++.++.++..+|.+......|..+.+.+|......
T Consensus 283 -t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 283 -TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred -cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 44477788888888888888888888888887654443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=8e-06 Score=67.39 Aligned_cols=70 Identities=27% Similarity=0.501 Sum_probs=58.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 124 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 124 a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
..+++..++|+.|+.++++++..+|++ ...++..|.|+..+|++.+|+..|+++++..|++..+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 467888888888888888888888888 6778888888888899999998898888888888877665553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.017 Score=61.91 Aligned_cols=482 Identities=11% Similarity=0.101 Sum_probs=252.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001618 105 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 105 ~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
-++.-++.+|+|...|+.+..-+-.+|.+++-.+.|.++..-.|-. +.+|......-...+++..-...|.++|...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~-~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIM-EHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccc-cHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 4556678899999999999999999999999999999998877776 44455444444455677777778888876433
Q ss_pred cHHHHHHHHHHHHHhhh------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 001618 185 NVEALVALAVMDLQANE------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT 258 (1043)
Q Consensus 185 ~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 258 (1043)
+.+.|...-..-.+.+. ...+-+|.++.-...-.+|.....|...+..+-.-..
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~-------------------- 167 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEE-------------------- 167 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccc--------------------
Confidence 24444333222222221 0112333333333333455555555544433221100
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHH
Q 001618 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKA 336 (1043)
Q Consensus 259 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~ 336 (1043)
++ -...+.+.+.-...|.+++. .+-++ +-.+...-.+++. .+.++.. .-.+....+..
T Consensus 168 -------~~-kwEeQqrid~iR~~Y~ral~---tP~~n------leklW~dy~~fE~---e~N~~TarKfvge~sp~ym~ 227 (660)
T COG5107 168 -------LG-KWEEQQRIDKIRNGYMRALQ---TPMGN------LEKLWKDYENFEL---ELNKITARKFVGETSPIYMS 227 (660)
T ss_pred -------cc-cHHHHHHHHHHHHHHHHHHc---Ccccc------HHHHHHHHHHHHH---HHHHHHHHHHhcccCHHHHH
Confidence 00 01122334444555555553 11111 1111111111111 1111110 00000001110
Q ss_pred HHHHHHHcCCHHHHHHHH-----HHHHHhCCCCHHHHHHHHHHH------hcCC-HHHHHH-HHHHHHHHHHhcCCCCcH
Q 001618 337 LGHIYVQLGQIEKAQELL-----RKAAKIDPRDAQAFIDLGELL------ISSD-TGAALD-AFKTARTLLKKAGEEVPI 403 (1043)
Q Consensus 337 la~~~~~~g~~~~A~~~~-----~~~l~~~p~~~~~~~~la~~~------~~~~-~~~A~~-~~~~a~~~~~~~~~~~~~ 403 (1043)
--..|....+....+..+ +++-+.......-|.+....- ..++ ..+-+. .+++++..++- .+
T Consensus 228 ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~-----~~ 302 (660)
T COG5107 228 ARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYY-----AE 302 (660)
T ss_pred HHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhh-----hH
Confidence 001111111111111000 000000000011132222211 1111 122121 23444444332 36
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHH
Q 001618 404 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 483 (1043)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1043)
++|+.........++-+.|+.....++.. .+.+.
T Consensus 303 evw~dys~Y~~~isd~q~al~tv~rg~~~----------------------------------------------spsL~ 336 (660)
T COG5107 303 EVWFDYSEYLIGISDKQKALKTVERGIEM----------------------------------------------SPSLT 336 (660)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhcccC----------------------------------------------CCchh
Confidence 77777777777888888888877776653 33466
Q ss_pred HhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHH---HcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 001618 484 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK---ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 560 (1043)
Q Consensus 484 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 560 (1043)
+.++.+|...++.+.-..+|.++...- ...+..+..-. .-|+++...+++-+-. ....-+|..+.+.-.+
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L----~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r 409 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDL----KRKYSMGESESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLR 409 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHH----HHHHhhhhhhhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHH
Confidence 677788877777776667777665311 00011111100 0123322222221111 1233455555555556
Q ss_pred ccchHHHHHHHHHhhhcC-CCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHH
Q 001618 561 NDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 639 (1043)
Q Consensus 561 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~ 639 (1043)
..-...|..+|-++-+.. ..++.|..+++.. |... +++.-|..+|+--+...|++....+..-..
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E--~~~~------------~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE--YYAT------------GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHH--HHhc------------CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 666888999999887765 5567766655443 3444 889999999999999999988888888888
Q ss_pred HHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC
Q 001618 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 703 (1043)
Q Consensus 640 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 703 (1043)
+...++-..|..+|+++++..... ....+|-.+...-..-|....++.+=+.....+|..+
T Consensus 476 Li~inde~naraLFetsv~r~~~~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKT---QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHh---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 889999999999999888765311 2245666666666667888888877777777765443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.019 Score=61.72 Aligned_cols=121 Identities=11% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 135 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~ 135 (1043)
+.+++++|..+|.++.......+ +++.++....+-..+.+.-...+...-+..|..+...+..|...++.+.|.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 44567799999999876554443 3344455555667788877777777777889889999999999999999999
Q ss_pred HHHHHHHHHHhCCCC------------hh--HHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 001618 136 SLEFYKRALQVHPSC------------PG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 181 (1043)
Q Consensus 136 Al~~~~~~l~~~p~~------------~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 181 (1043)
|+..+......-... .. ..-...+.|+...|.+.+++..+.+.+..
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999887665441111 01 11234789999999999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0011 Score=65.66 Aligned_cols=243 Identities=15% Similarity=0.095 Sum_probs=164.9
Q ss_pred CchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC-------------cCc------HHHHHHHHHHHHHcCChhHHHHHH
Q 001618 477 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-------------QDY------VDAYLRLAAIAKARNNLQLSIELV 537 (1043)
Q Consensus 477 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------------p~~------~~~~~~la~~~~~~g~~~~A~~~~ 537 (1043)
.....+|...-.++.++..+++|..-+...-..+ |+- ....+..+.+....|+..+.+.-+
T Consensus 66 ~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl 145 (366)
T KOG2796|consen 66 TDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRL 145 (366)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3455666667777778888888776655443322 211 123344455555666666665554
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhccc-hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 538 NEALKVNGKYPNALSMLGDLELKNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 538 ~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
......-. .+... ...+. .+..+..+++-+. ...+.+.++ ..-. |.|.-.+
T Consensus 146 ~~L~~~V~-------~ii~~-~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~-llG~------------kEy~iS~ 197 (366)
T KOG2796|consen 146 HKLKTVVS-------KILAN-LEQGLAEESSIRLWRKRLG-------RVMYSMANC-LLGM------------KEYVLSV 197 (366)
T ss_pred HHHHHHHH-------HHHHH-HHhccchhhHHHHHHHHHH-------HHHHHHHHH-Hhcc------------hhhhhhH
Confidence 44332211 01111 11122 2333344433221 223334444 4444 8889999
Q ss_pred HHHHHHHccC-cccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCchhHHHhHHHHHHHccCHHHHHHHHHH
Q 001618 617 ELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 694 (1043)
Q Consensus 617 ~~~~~~l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 694 (1043)
..+.++++.+ |.++.....||.+.++.|+.+.|..+|+.+-+.... +.......|.-+.+.+|.-++++..|...|.+
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 9999999998 558999999999999999999999999977654321 12224567888999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC---cchhhHHHHHH
Q 001618 695 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAM 749 (1043)
Q Consensus 695 al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~---~~~~~nla~~~ 749 (1043)
++.. ++.++....+-|.|+.-.|+..+|++..+.++...|.. .++.|||-.+|
T Consensus 278 i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 278 ILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred cccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 9988 67778899999999999999999999999999999964 45566666554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-05 Score=71.90 Aligned_cols=111 Identities=19% Similarity=0.266 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
.+-.-|.-++..|+|.+|...|..+|...|..+ ..+...|.++++++.++.|+..+.+++.++|.. ..+....+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRA 175 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRA 175 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHH
Confidence 345568899999999999999999999998753 456778999999999999999999999999998 56677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 196 (1043)
.+|.++..++.|+.-|.++++.+|....+.-..+.+-
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 9999999999999999999999999877766665543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=67.80 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=55.9
Q ss_pred CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCC----C-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----D-AQILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 667 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~-~~~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
+...++.++|.+|..+|++++|+.+|++++......+ . ..++..+|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999998742222 1 667889999999999999999999999876
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.056 Score=64.97 Aligned_cols=409 Identities=18% Similarity=0.148 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHHCC--CcH----HHHHHHHHHHHHcCCHH
Q 001618 277 EKAGLYYMASVKEINKP-HEFIFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYP--DNC----ETLKALGHIYVQLGQIE 348 (1043)
Q Consensus 277 ~~A~~~~~~a~~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~ 348 (1043)
..|+.+++.+++..+.+ .....+++.+|.+++ ...+++.|..++++++.+.. +.. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 34556666655422221 223455777787777 67788888888888876642 222 34456677777777666
Q ss_pred HHHHHHHHHHHhCCC---C-HHHHHHHH--HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHcCCHH
Q 001618 349 KAQELLRKAAKIDPR---D-AQAFIDLG--ELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFE 420 (1043)
Q Consensus 349 ~A~~~~~~~l~~~p~---~-~~~~~~la--~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~ 420 (1043)
|...+.+.+..... . ....+.+. .+. ..+++..|+..++.........++... ..+....+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888888775433 1 22222222 222 336888899888887776543322111 222333466677788888
Q ss_pred HHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHH--HHHhcCChHH
Q 001618 421 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR--LLEQIHDTVA 498 (1043)
Q Consensus 421 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~ 498 (1043)
.+++.++.+....... .+++ . ..+....++..+-. ++...|++..
T Consensus 197 d~~~~l~~~~~~~~~~-q~~~------------------------------~--~~~~qL~~~~lll~l~~~l~~~~~~~ 243 (608)
T PF10345_consen 197 DVLELLQRAIAQARSL-QLDP------------------------------S--VHIPQLKALFLLLDLCCSLQQGDVKN 243 (608)
T ss_pred hHHHHHHHHHHHHhhc-ccCC------------------------------C--CCcHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888876532100 0000 0 11223334444433 3455667666
Q ss_pred HHHHHHHHHH------hCc---C---------------------------------cHHHHHHHHHHHHHcCChhHHHHH
Q 001618 499 ASVLYRLILF------KYQ---D---------------------------------YVDAYLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 499 A~~~~~~~l~------~~p---~---------------------------------~~~~~~~la~~~~~~g~~~~A~~~ 536 (1043)
+...++.+-. ..| . .+-+|+.-+......+..+.|.++
T Consensus 244 ~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~ 323 (608)
T PF10345_consen 244 SKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKF 323 (608)
T ss_pred HHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHH
Confidence 6655444321 111 0 012344444455666766678787
Q ss_pred HHHHHHHcCCCh--------------------------HHHHHHHHHhhhccchHHHHHHHHHhhhcCC---C-----CC
Q 001618 537 VNEALKVNGKYP--------------------------NALSMLGDLELKNDDWVKAKETFRAASDATD---G-----KD 582 (1043)
Q Consensus 537 ~~~al~~~p~~~--------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---~-----~~ 582 (1043)
+.+++..-.... .+....+++.+-.++|..|...+..+..... . ..
T Consensus 324 ~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 403 (608)
T PF10345_consen 324 LEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY 403 (608)
T ss_pred HHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh
Confidence 777765421111 1445567777888999999999988776431 1 23
Q ss_pred hHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHH--------HHHccCcc---cHHHHHHhHHHHHhcCCchH---
Q 001618 583 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTS---NLYAANGAGVVLAEKGQFDV--- 648 (1043)
Q Consensus 583 ~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~P~---~~~a~~~la~~~~~~g~~~~--- 648 (1043)
+..++..|-. +... |+.+.|...|. .+....+. .+.+..++..++...+.-..
T Consensus 404 ~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 404 PLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 4555555555 5555 99999999998 55555555 34456677777776665444
Q ss_pred -HHHHHHHHHHHhcCCCCCCchhHHHhHHHHH-----H--HccCHHHHHHHHHHHHHHh-cCCCC----HHHHHHHHHHH
Q 001618 649 -SKDLFTQVQEAASGSVFVQMPDVWINLAHVY-----F--AQGNFALAMKMYQNCLRKF-YYNTD----AQILLYLARTH 715 (1043)
Q Consensus 649 -A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~-----~--~~g~~~~A~~~~~~al~~~-~~~~~----~~~l~~la~~~ 715 (1043)
+-.++.++..... +.+..++..++++ . ..-...++...+..+++.. ....+ ..++..++..+
T Consensus 471 ~~~~l~~~i~p~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 471 ELNELLEQIEPLCS-----NSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred HHHHHHHhcCcccc-----CCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 4444444433222 1222233332222 1 2224458888888888887 32222 44566677777
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCC
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
+ .|+..+.......++++.+..
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhh
Confidence 7 788888666666666665433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.027 Score=60.65 Aligned_cols=145 Identities=13% Similarity=0.044 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
.+...|.++-.++++.+|..+|.++.+...+++ ..+.++....+-..+.+.-...+...-+..|.+ +.+.+-.|
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s-~~l~LF~~ 86 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS-AYLPLFKA 86 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc-hHHHHHHH
Confidence 455678888999999999999999987665543 333444444555667776666666666677866 66677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 239 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 239 (1043)
...++.+.+.+|+..+......-..+...|...- +.+- . .+...-...|.++...|.+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----------i~~l----------~-~df~l~~i~a~sLIe~g~f 144 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----------IQQL----------F-SDFFLDEIEAHSLIETGRF 144 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----------HHHH----------h-hHHHHHHHHHHHHHhcCCc
Confidence 8889999999998888766544222221111110 0000 0 1112234456777788888
Q ss_pred HHHHHHHHHHHhh
Q 001618 240 FLVEQLTETALAV 252 (1043)
Q Consensus 240 ~~A~~~~~~~l~~ 252 (1043)
.++..++++++..
T Consensus 145 ~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 145 SEGRAILNRIIER 157 (549)
T ss_pred chHHHHHHHHHHH
Confidence 8888888877753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0004 Score=64.98 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
..-.+.++......|++.+|...|++++.- +...++.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG------------------------------------------~fA~d~a~ 126 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSG------------------------------------------IFAHDAAM 126 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------------------------------------------ccCCCHHH
Confidence 455677899999999999999999999863 44568889
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQD--YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 560 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 560 (1043)
+..++......+++..|...++.+.+.+|. .++..+.++..+...|.+.+|...|+.++...|. +.....++.++.+
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~ 205 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK 205 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 999999999999999999999999998885 4778889999999999999999999999999886 6778888999999
Q ss_pred ccchHHHHHHHHHhhh
Q 001618 561 NDDWVKAKETFRAASD 576 (1043)
Q Consensus 561 ~g~~~~A~~~~~~~l~ 576 (1043)
+|+..+|..-+..+.+
T Consensus 206 qgr~~ea~aq~~~v~d 221 (251)
T COG4700 206 QGRLREANAQYVAVVD 221 (251)
T ss_pred hcchhHHHHHHHHHHH
Confidence 9988887776665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.058 Score=63.52 Aligned_cols=270 Identities=15% Similarity=0.145 Sum_probs=157.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHH
Q 001618 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 169 (1043)
Q Consensus 90 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~ 169 (1043)
|.+....+-|++|..+|++.- -+..+...+ .-..++.+.|.++..++ +.+.+|..+|.+..+.|...
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~VL---ie~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQVL---IENIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHHHH---HHHhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchH
Confidence 445555555666666665431 122222221 12334555555554443 12567888888888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001618 170 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 249 (1043)
Q Consensus 170 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 249 (1043)
+|+..|-++ +++..+.....+....|. |++-+.++.-+-+.. ..+.+-..|...|...++..+.+.++.
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhc--
Confidence 888877654 455566666666666666 777776666554432 122233445556666666665554432
Q ss_pred HhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 001618 250 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 329 (1043)
Q Consensus 250 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 329 (1043)
.|+. .-.-..|.-++..|.|+.|.-+|...-. |..++..+..+|+|+.|+...+++ +
T Consensus 1191 ------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRKA-----n 1247 (1666)
T KOG0985|consen 1191 ------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARKA-----N 1247 (1666)
T ss_pred ------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhhc-----c
Confidence 1222 2344567778888888888777765432 777888888999999998888776 4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 001618 330 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 408 (1043)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 408 (1043)
+..+|...+.++...+.+.-|.-+=-.+ --..+-+-.+...| ..|-+++-+..++.++.+-.. ....+..
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-----HMgmfTE 1318 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-----HMGMFTE 1318 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-----HHHHHHH
Confidence 5567777666666665554443211110 11234455566667 777777777777666554322 2344555
Q ss_pred HHHHHHH
Q 001618 409 IGVIHFE 415 (1043)
Q Consensus 409 la~~~~~ 415 (1043)
+|.+|.+
T Consensus 1319 LaiLYsk 1325 (1666)
T KOG0985|consen 1319 LAILYSK 1325 (1666)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.044 Score=59.93 Aligned_cols=435 Identities=13% Similarity=0.086 Sum_probs=220.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQ 145 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~~l~ 145 (1043)
.-..+|..++...+.++..|.......-+.+.+.+--.+|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 457788889988899999999998888888889999999999999999999999999988887765 9999999999999
Q ss_pred hCCCChhHHHHhHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh---------hhHHhH----------
Q 001618 146 VHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQA---------NEAAGI---------- 205 (1043)
Q Consensus 146 ~~p~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------~~~~~~---------- 205 (1043)
.+|++ +.+|.. |+++.- +-.=...-.+.+..+..+...-...+...... +.....
T Consensus 169 ~npds-p~Lw~e----yfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 169 FNPDS-PKLWKE----YFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDF 243 (568)
T ss_pred cCCCC-hHHHHH----HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHH
Confidence 99999 444432 221110 00001111122222222221111111100000 000000
Q ss_pred -HH-HHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001618 206 -RK-GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 283 (1043)
Q Consensus 206 -~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 283 (1043)
.+ -...+.-.....|.++..+..++.-.+ +-..... . ....+......---.-+....+|
T Consensus 244 ~kel~k~i~d~~~~~~~~np~~~~~laqr~l------------~i~~~td-l-----~~~~~~~~~~~~~~k~s~~~~v~ 305 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSKAPDNPLLWDDLAQREL------------EILSQTD-L-----QHTDNQAKAVEVGSKESRCCAVY 305 (568)
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHHHHH------------HHHHHhh-c-----cchhhhhhchhcchhHHHHHHHH
Confidence 00 001111222235666666655544322 1111100 0 00000111111111122223555
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHH--cC-CHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 001618 284 MASVKEINKPHEFIFPYYGLGQVQLK--LG-DFRSALTNFEKVLEI---YPDNCETLKALGHIYVQLGQIEKA-QELLRK 356 (1043)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~la~~~~~--~g-~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~ 356 (1043)
+.++..++. ......+..+-.-... .| ....-+.+++++... .+..+.-+..+..++.......++ ......
T Consensus 306 ee~v~~l~t-~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e 384 (568)
T KOG2396|consen 306 EEAVKTLPT-ESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE 384 (568)
T ss_pred HHHHHHhhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH
Confidence 555542110 0000111111111111 11 223333444444332 455566666666666666543332 222223
Q ss_pred HHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC-HHHHHHH-HHHHHcc
Q 001618 357 AAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQS-FKDALGD 432 (1043)
Q Consensus 357 ~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~-~~~al~~ 432 (1043)
. ..++...|...-.+. ...+++- ..+.....+.+... ...+....... .|+ ....... +-.++.
T Consensus 385 ~---f~~s~k~~~~kl~~~~~s~sD~q~--~f~~l~n~~r~~~~----s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~- 452 (568)
T KOG2396|consen 385 L---FRDSGKMWQLKLQVLIESKSDFQM--LFEELFNHLRKQVC----SELLISWASAS--EGDSLQEDTLDLIISALL- 452 (568)
T ss_pred H---hcchHHHHHHHHHHHHhhcchhHH--HHHHHHHHHHHHhc----chhHHHHHHHh--hccchhHHHHHHHHHHHH-
Confidence 2 234555555444444 1222221 11111111111100 01111011000 122 1111110 001110
Q ss_pred hhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC
Q 001618 433 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 512 (1043)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 512 (1043)
.. ..+...+.-..+-..+...|-+.+|...|......-|-
T Consensus 453 --------------------------------s~--------~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~ 492 (568)
T KOG2396|consen 453 --------------------------------SV--------IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPF 492 (568)
T ss_pred --------------------------------Hh--------cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCc
Confidence 00 23445556666677788889999999999999988888
Q ss_pred cHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc
Q 001618 513 YVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577 (1043)
Q Consensus 513 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 577 (1043)
....+..+..+-.. .-+..-+..+|..++.....++.+|..+-..-...|..+.+-.++-++++.
T Consensus 493 sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 493 SLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred cHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 77777666555322 223677889999999999999999999988888888888777777777653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00043 Score=60.64 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 162 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg~~~ 162 (1043)
+-..|..+...|+++.|++.|.+++...|.++.++...|..+.-.|+.++|+..+.+++.+.... .-..+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888899999999999999999999999999999999999999999999999999985332 234577889999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 001618 163 YKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
..+|+.+.|..-|+.+.++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00022 Score=62.39 Aligned_cols=104 Identities=19% Similarity=0.100 Sum_probs=82.8
Q ss_pred HhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHH
Q 001618 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 712 (1043)
Q Consensus 635 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la 712 (1043)
.-|.++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+..+|+.-+.+++........ ...+..-|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 447788888999999999999999888 77889999999999999999999999999988544333 55667778
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHH
Q 001618 713 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 745 (1043)
Q Consensus 713 ~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nl 745 (1043)
.+|...|+-+.|..-|+.+-++. ++.++..|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG--S~FAr~QL 153 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG--SKFAREQL 153 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC--CHHHHHHH
Confidence 88888999999999898887773 44443333
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=64.61 Aligned_cols=135 Identities=16% Similarity=0.118 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHc
Q 001618 346 QIEKAQELLRKAAKIDPRD------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 416 (1043)
Q Consensus 346 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~ 416 (1043)
++.+|+..+++++++..+. ..-+..++.+| ...++++|+.+|+++-..+........ ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555443222 22345678888 557999999999999888765322222 35566677778889
Q ss_pred CCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCCh
Q 001618 417 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 496 (1043)
Q Consensus 417 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 496 (1043)
++|.+|+..|+++......+.. +....-..++.-|.++.-..+.
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~L------------------------------------LKys~KdyflkAgLChl~~~D~ 211 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNL------------------------------------LKYSAKDYFLKAGLCHLCKADE 211 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchH------------------------------------HHhHHHHHHHHHHHHhHhcccH
Confidence 9999999999988763210000 0111223445556677776787
Q ss_pred HHHHHHHHHHHHhCcCcHHH
Q 001618 497 VAASVLYRLILFKYQDYVDA 516 (1043)
Q Consensus 497 ~~A~~~~~~~l~~~p~~~~~ 516 (1043)
-.+...+++....+|...++
T Consensus 212 v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 212 VNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHhcCCccccc
Confidence 77888888888888876544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.8e-05 Score=66.20 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=61.0
Q ss_pred CcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhc--CCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 626 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 626 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
+|+-..+++.+|.+|...|++++|+.+|+++++... ++..+....++.++|.+|..+|++++|+.+|+++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356677899999999999999999999999998731 11222357789999999999999999999999999874
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.8e-05 Score=82.69 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=39.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---ALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---a~~~la~~~~~~g~~~~Al~~~~~~l~~ 146 (1043)
+|+++.+|+++|.+|+..|+|++|+..|++++.++|++.. +|+.+|.+|..+|++++|+..|++++.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555556666666666666666666666666666655553 2555555555555555555555555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.1e-05 Score=81.40 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=65.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHhHHHHHHHcCCHHHHHHHHHHHHhh
Q 001618 112 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 181 (1043)
Q Consensus 112 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 181 (1043)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999842 46999999999999999999999999997
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0025 Score=65.29 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=133.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhc-CCCCChHHHHH--hhhHHHHH
Q 001618 520 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLS--LGNWNYFA 596 (1043)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~--lg~~~y~~ 596 (1043)
-+.+....|++.+|.....+++.-.|.+.-++..--.+++-+|+...-...+++++.. ++....++++. ++-. +..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-LEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-HHH
Confidence 3455677899999999999999999999999999999999999999999999999886 44444444432 1111 222
Q ss_pred HHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHH
Q 001618 597 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 676 (1043)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg 676 (1043)
. |.|++|.+.-+++++++|.+.++...++.++...|++.++.++..+--..-..+.. ....-|..-+
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHHHH
Confidence 3 99999999999999999999999999999999999999999998876554322111 1233456678
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhcCCCC
Q 001618 677 HVYFAQGNFALAMKMYQNCLRKFYYNTD 704 (1043)
Q Consensus 677 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 704 (1043)
.++...+.|+.|.+.|..-+-.-....|
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 8899999999999999876544334444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0095 Score=58.29 Aligned_cols=186 Identities=18% Similarity=0.126 Sum_probs=127.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHH
Q 001618 344 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 422 (1043)
Q Consensus 344 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 422 (1043)
.+++++|..+|.++ +..| ...+|..|-..|.++.....+.+...+....+.-+.-.++.++..+|
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHH
Confidence 35777887777765 3445 55677777777777777666655544444444444444566689999
Q ss_pred HHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhc-CChHHHHH
Q 001618 423 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASV 501 (1043)
Q Consensus 423 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 501 (1043)
+.++++++++....+ ....-......+|.+|..- .++++|+.
T Consensus 93 v~cL~~aieIyt~~G-------------------------------------rf~~aAk~~~~iaEiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMG-------------------------------------RFTMAAKHHIEIAEIYESDLQDFEKAIA 135 (288)
T ss_pred HHHHHHHHHHHHhhh-------------------------------------HHHHHHhhhhhHHHHHhhhHHHHHHHHH
Confidence 999998887532110 0111234456788888765 88999999
Q ss_pred HHHHHHHhCcC------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHH-------HHHHHHHhhhccchHHHH
Q 001618 502 LYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA-------LSMLGDLELKNDDWVKAK 568 (1043)
Q Consensus 502 ~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~ 568 (1043)
+|+++-.-... -..+++..+......+++.+|+..|++.....-+++.+ ++.-|.+++-..+.-.+.
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 99998764432 24567778888888999999999999988877666543 334566677777877788
Q ss_pred HHHHHhhhcCCC
Q 001618 569 ETFRAASDATDG 580 (1043)
Q Consensus 569 ~~~~~~l~~~~~ 580 (1043)
..+++..+..|.
T Consensus 216 ~ALeky~~~dP~ 227 (288)
T KOG1586|consen 216 RALEKYQELDPA 227 (288)
T ss_pred HHHHHHHhcCCc
Confidence 888888777775
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00024 Score=66.90 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 132 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 132 (1043)
--|+.|.+.++.....+|.+++.++..|.+++...+ +++|+.-|+.++.++|+...+++.+|.++...+.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 356788888888889999999999988887776533 4667777777788888888888888877766542
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
+ .|+. .. ....|++|..+|+++...+|+|......|...
T Consensus 85 l-------------~~d~-~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 L-------------TPDT-AE----------AEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H----------------H-HH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred h-------------cCCh-HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1 1111 00 00124556666666666666666555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00028 Score=66.45 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHH
Q 001618 99 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 175 (1043)
Q Consensus 99 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~---Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~ 175 (1043)
|+.|.+.++.....+|.++..++..|.++..+.++.. +.. .+++|+.-|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~----------------------------miedAisK~ 58 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK----------------------------MIEDAISKF 58 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH----------------------------HHHHHHHHH
Confidence 5667777777777777777777776666655433211 111 134566667
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001618 176 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232 (1043)
Q Consensus 176 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 232 (1043)
+.+|.++|+...++..+|.++...+. ...+++|..+|+++...+|.+......|-..
T Consensus 59 eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 59 EEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 77777777777777777776666543 1338999999999999999998777666554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00085 Score=71.66 Aligned_cols=132 Identities=19% Similarity=0.261 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
|+.......+.+..+.|..+|.+++...+.+..+|...|.+.+. .++...|..+|+.+++..|.+ ..+|+.....+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
Confidence 33334444444444444444444443333334444444444333 233333444444444444444 3334444444444
Q ss_pred cCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 165 LGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
.|+.+.|+.+|++++..-|... ..|..........|+ .+....+..++....|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhh
Confidence 4444444444444444333322 334444444444444 55555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.018 Score=67.89 Aligned_cols=177 Identities=17% Similarity=0.168 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG-- 131 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~a~~~la~~~~~~g-- 131 (1043)
....|..+++.+... .+..+.+.+|.+|+.- .+.+.|+.+|..+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345788888887654 5667777788777654 5789999999988761 1125667888899888753
Q ss_pred ---ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHh
Q 001618 132 ---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAG 204 (1043)
Q Consensus 132 ---~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~ 204 (1043)
++..|+.+|.++-.....+ ..+.+|.|+..-. ++..|..+|..|.. -.+..+.+.++.++..- |-..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCC
Confidence 6788999999888776444 4677888888765 56789999998875 45788888888887653 22334
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 001618 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETA 249 (1043)
Q Consensus 205 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~ 249 (1043)
...|..++.++...+ ++.+...++.++... +.+..+.-.+...
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 788999999888887 444444444443332 5555544444433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0007 Score=77.70 Aligned_cols=163 Identities=17% Similarity=0.185 Sum_probs=118.9
Q ss_pred cCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHc-chhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhH
Q 001618 8 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYL-GKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 86 (1043)
Q Consensus 8 ~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~-g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~ 86 (1043)
.|+-+.+.++|..+....- . ...+..+..| ++|... +-... .. .......|..++.......|+.+..+
T Consensus 201 ~gdR~~GL~~L~~~~~~~~---i----~~~la~L~LL-~y~~~~~~~~~~-~~-~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSEN---I----RSPLAALVLL-WYHLVVPSFLGI-DG-EDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred CCcHHHHHHHHHHHhccCC---c----chHHHHHHHH-HHHHHHHHHcCC-cc-cCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 4777888899988754321 0 0112222222 233222 11121 11 44567789999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHH
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~ 162 (1043)
+..|+++...|+.++|+..|+.++..... ....++.++.++..+++|++|..+|.++.+.+.-+.....+..|.|+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 99999999999999999999988743222 24567889999999999999999999999988777777888899999
Q ss_pred HHcCCH-------HHHHHHHHHHHh
Q 001618 163 YKLGQL-------GKARQAFQRALQ 180 (1043)
Q Consensus 163 ~~~g~~-------~~A~~~~~~al~ 180 (1043)
..+|+. ++|...|.++-.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 999998 666666655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0047 Score=63.43 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=106.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChh--HHHHhHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-HPSCPG--AIRLGIGLCR 162 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~-~p~~~~--~~~~~lg~~~ 162 (1043)
....+.++..+|++.+|....+++++..|.+..++..--.+++.+|+...-...+.+++.. +|+.|- .+.-.++.++
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3445667778899999999999999999999999888888899999999999999999877 666533 3334577888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 001618 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 215 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 215 (1043)
...|-|++|...-.++++++|.+.-+...++.++...++ +.++.+++.+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~t 235 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKT 235 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhc
Confidence 899999999999999999999998888888888888888 88888877654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.01 Score=65.45 Aligned_cols=118 Identities=11% Similarity=0.082 Sum_probs=95.9
Q ss_pred cCcc-cHHHHHHhHHHH-HhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC
Q 001618 625 QHTS-NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 702 (1043)
Q Consensus 625 ~~P~-~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 702 (1043)
..|. -.|...++|-+| ...|+...|+.++..++...|.. .-....+|+.++...|....|-.++.+++.. ..
T Consensus 600 ~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~--~~ 673 (886)
T KOG4507|consen 600 NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ----QDVPLVNLANLLIHYGLHLDATKLLLQALAI--NS 673 (886)
T ss_pred cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhh----hcccHHHHHHHHHHhhhhccHHHHHHHHHhh--cc
Confidence 3444 334444444444 46799999999999999888743 2345779999999999999999999999998 35
Q ss_pred CCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 703 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 703 ~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
..|-..+.+|++++...+.+.|++.|+.|+++.|+++.+.-.|-.+
T Consensus 674 sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 674 SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 5588899999999999999999999999999999999988777665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0012 Score=70.57 Aligned_cols=127 Identities=12% Similarity=0.186 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHHccCcccHHHHHHhHHHHHh-cCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHH
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 688 (1043)
+..+.|..+|.++++..+.+...|...|.+... .++...|..+|+.+++..| .+..+|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 669999999999997767677888888888666 5666669999999999998 7889999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 689 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 689 ~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999998854433 35688888888888999999999999999999986554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.012 Score=58.09 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 376 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 376 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
....+.++..+|+++..+....|.+.+...-...+--....-+++.|+++|++++.
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 33444445555555444444433333322222222223444566666666666655
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.17 Score=55.60 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCC-HHHHHHHHHHH
Q 001618 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRA 178 (1043)
Q Consensus 100 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~a 178 (1043)
..-..+|+.++...+.++..|........+.+.+.+--.+|.+++..+|++ +.+|+..+.-.+..+. .+.|+..|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-PDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-chhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445678889999999999999998888888888999999999999999999 7889988888887776 89999999999
Q ss_pred HhhCCCcHHHHHHHHHHH
Q 001618 179 LQLDPENVEALVALAVMD 196 (1043)
Q Consensus 179 l~~~p~~~~a~~~la~~~ 196 (1043)
|..+|+++..|...-.+-
T Consensus 167 LR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRME 184 (568)
T ss_pred hhcCCCChHHHHHHHHHH
Confidence 999999998876655443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=52.44 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 125 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~ 125 (1043)
|.+|+.+|..|...|++++|+..|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567888888888888888888888888888888888887764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.013 Score=57.68 Aligned_cols=200 Identities=15% Similarity=0.139 Sum_probs=122.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH------HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001618 153 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA------LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 226 (1043)
Q Consensus 153 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a------~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 226 (1043)
..+...+.+|....++++|..++.++.+-..+|... +-..+.+...... +.++..+++++
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k---lsEvvdl~eKA----------- 97 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK---LSEVVDLYEKA----------- 97 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH-----------
Confidence 344555666777777777777777777543333211 1122222222222 44455554444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh---hhHHHH
Q 001618 227 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI---FPYYGL 303 (1043)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~l 303 (1043)
..+|...|..+.|...++++-+. ....++++|+.+|++++..+....... ..+-..
T Consensus 98 ---s~lY~E~GspdtAAmaleKAak~------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 98 ---SELYVECGSPDTAAMALEKAAKA------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred ---HHHHHHhCCcchHHHHHHHHHHH------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 34566666666665555555433 334567777777777766443322222 224456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Q 001618 304 GQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI----DPRDAQAFIDLGE 373 (1043)
Q Consensus 304 a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~ 373 (1043)
+.++.+...+.+|...+.+-... .++....+.....+|+...+|..|...++...++ .|.+..+..+|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 67788888888888777664332 3444455666667777778999999999987664 3667788888888
Q ss_pred HHhcCCHHHHHHHH
Q 001618 374 LLISSDTGAALDAF 387 (1043)
Q Consensus 374 ~~~~~~~~~A~~~~ 387 (1043)
.|..|+.++....+
T Consensus 237 ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AYDEGDIEEIKKVL 250 (308)
T ss_pred HhccCCHHHHHHHH
Confidence 88888888766554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00058 Score=66.70 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 380 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 380 (1043)
.-|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+.....+++++.|+.+..++.+|..+ ....+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34555666778888888999999889988888888999999988999998888899999998888888888888 88888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 424 (1043)
Q Consensus 381 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 424 (1043)
..|+..++++..+...........+...|-.+-...=...++..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 88998888888777665444334444444444333333333333
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=64.71 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
....|..|+..|.+++.++|..+..|-..+.++++..+++.+.....++++++|+.+.+.+.+|.+......|.+|+..+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 34578899999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 001618 141 KRALQV 146 (1043)
Q Consensus 141 ~~~l~~ 146 (1043)
+++..+
T Consensus 102 qra~sl 107 (284)
T KOG4642|consen 102 QRAYSL 107 (284)
T ss_pred HHHHHH
Confidence 998665
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.29 Score=56.16 Aligned_cols=303 Identities=15% Similarity=0.079 Sum_probs=147.3
Q ss_pred HHcCCHHHHHHHHHHHHHHC--CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHH-hcCC
Q 001618 308 LKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI-DLGELL-ISSD 379 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~-~~~~ 379 (1043)
+..|+...|.+++.-.+-.. +. ...+++.+|.++...|+- ...++...++...+.+..+- .||.-+ ..|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 35788888888887766442 11 236888889888888765 77888877776543322211 112211 2222
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhh
Q 001618 380 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 459 (1043)
Q Consensus 380 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (1043)
.-...|+++..............+-..+|.+....++.+.-..++.-+.+.
T Consensus 446 --a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ET--------------------------- 496 (929)
T KOG2062|consen 446 --ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQET--------------------------- 496 (929)
T ss_pred --ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhh---------------------------
Confidence 223455555554433111111223344555544444443333344333321
Q ss_pred hhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC-cC-cHHHHHHHHHHHHHcCChhHHHHHH
Q 001618 460 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QD-YVDAYLRLAAIAKARNNLQLSIELV 537 (1043)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~-~~~~~~~la~~~~~~g~~~~A~~~~ 537 (1043)
......--..+|..+...|+-++|..+.++++... |- -....+.++..|...|+...-..++
T Consensus 497 ----------------QHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lL 560 (929)
T KOG2062|consen 497 ----------------QHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLL 560 (929)
T ss_pred ----------------hHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhh
Confidence 11222233344555666677778888877776532 21 1234456666777777765544444
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChH-HHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 538 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
.-++.--.++..-...++.-+.-..+++....+..-+.+.+..+-.| +-+.||.. +.. .-..+|+
T Consensus 561 h~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIa--CAG------------tG~~eAi 626 (929)
T KOG2062|consen 561 HVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIA--CAG------------TGLKEAI 626 (929)
T ss_pred cccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhh--hcC------------CCcHHHH
Confidence 44333222333322233333333445555555555444443332222 33344433 221 2245677
Q ss_pred HHHHHHHccCcccH---HHHHHhHHHHHhcC-----CchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH
Q 001618 617 ELYTRVIVQHTSNL---YAANGAGVVLAEKG-----QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~---~a~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 679 (1043)
.+++.+.. +|.+. .++..+|.+.+++. ++..-.+.|.+++.. ...+....+|-++
T Consensus 627 ~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~d-------KhEd~~aK~GAil 689 (929)
T KOG2062|consen 627 NLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVIND-------KHEDGMAKFGAIL 689 (929)
T ss_pred HHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhh-------hhhHHHHHHHHHH
Confidence 77777665 55532 35555566655543 333334444444332 2345555555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.11 Score=60.00 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHcCCHHHH
Q 001618 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 316 (1043)
Q Consensus 238 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 316 (1043)
....+..++....... |......+..|+++...|+.++|+..|+.++..-. -..-...+++.++.++....+|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3444555565555443 45555666667777777777777777776553111 1122335577888888888888888
Q ss_pred HHHHHHHHHHCCCcH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 001618 317 LTNFEKVLEIYPDNC-ETLKALGHIYVQLGQI-------EKAQELLRKAAKI 360 (1043)
Q Consensus 317 ~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~~l~~ 360 (1043)
..+|..+.+.+.-.. -..+..|.++...|+. ++|..+|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888887665443 3445567777777877 8888888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0051 Score=67.21 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=121.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhc
Q 001618 522 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601 (1043)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~ 601 (1043)
.-..+..+...-++..++|+.++|+++.++..|+.- ...-..+|..+|+++++.... .++.. ....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~---- 241 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ---- 241 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh----
Confidence 344566778888888899999999998888877652 233467888888888765322 11111 1000
Q ss_pred ccChhHHhhhHHHHHHHHHHHHccCcc--cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHH
Q 001618 602 KRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 602 ~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 679 (1043)
....+-..+...+. -+++...+|.++-+.|+.++|++.|+.+++..|.. ++..++.+|..++
T Consensus 242 -------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~L 305 (539)
T PF04184_consen 242 -------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEAL 305 (539)
T ss_pred -------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHH
Confidence 00011111112222 34566788999999999999999999999888743 4667999999999
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hhc---------------HHHHHHHHHHHHHhCCCCcc
Q 001618 680 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 740 (1043)
Q Consensus 680 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~-~g~---------------~~~A~~~~~ka~~~~P~~~~ 740 (1043)
+.++.|.++...+.+. ....-+..+.+.+..+....+ .++ -..|.+.+.+|++.+|.-+.
T Consensus 306 Lelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 306 LELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999885552 111112334554544433322 122 12377889999999996643
|
The molecular function of this protein is uncertain. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0029 Score=69.07 Aligned_cols=163 Identities=14% Similarity=0.144 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------C--CH
Q 001618 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------D--NV 117 (1043)
Q Consensus 63 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-----------------------~--~~ 117 (1043)
.+...-++.-.+|+.++|+.+.+|+.++.-. .....+|..+|+++++... . .+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~ 259 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLV 259 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhh
Confidence 4455678888899999999999998876531 2235666666666655210 0 13
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHH
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVM 195 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~ 195 (1043)
.+...+|.|..+.|+.++|++.|..+++..|. +...++..+..|+..++.+.++...+.+.=.+ -|+.....+.-+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 45577888999999999999999999988876 34668889999999999999999988886433 24555555555544
Q ss_pred HHHh-hh------------HHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001618 196 DLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALN 227 (1043)
Q Consensus 196 ~~~~-~~------------~~~~~~A~~~~~~al~~~p~~~~~~~ 227 (1043)
..+. ++ ...-..|++.+.++++.||..+..+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 3331 11 11134577888999999998875543
|
The molecular function of this protein is uncertain. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.014 Score=63.37 Aligned_cols=131 Identities=17% Similarity=0.120 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH----cCCChHHHHHHHHHhhh---ccchHHHHHHHHHhhhcCCCCChHHH
Q 001618 514 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 586 (1043)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~ 586 (1043)
++....+-..|....+|+.-+.+++.+-.+ -+..+.+.+.+|.++.+ .|+.+.|+..+..++.....+++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344455555666777777777777666555 45566677777777777 78888888888887666666677777
Q ss_pred HHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhcCCchHH
Q 001618 587 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 649 (1043)
Q Consensus 587 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A 649 (1043)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++...|.-.+.
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccc
Confidence 777877 66553321111 11559999999999999996 445555666666666654333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.047 Score=64.49 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=86.3
Q ss_pred hhHHHHhHHHHHHh----cCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHcCCChH----
Q 001618 479 KVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYPN---- 549 (1043)
Q Consensus 479 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~---- 549 (1043)
.+.+.+.++.+|.. ..+...|..+|.++.... .+.+...++.++... +.+..+.-.+.......-..+.
T Consensus 359 ~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~ 436 (552)
T KOG1550|consen 359 HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAA 436 (552)
T ss_pred ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHH
Confidence 45556666666553 235666777777766655 234444444433222 5555544444333333211111
Q ss_pred HHHHHHHHhhhc----cchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHcc
Q 001618 550 ALSMLGDLELKN----DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 625 (1043)
Q Consensus 550 ~~~~l~~~~~~~----g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 625 (1043)
.+......+... .+...+...+.++... -...+.+.||.+ |+.. .... .++..|...|..+...
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---g~~~a~~~lgd~-y~~g-~g~~-------~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 437 YLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ---GNADAILKLGDY-YYYG-LGTG-------RDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHhccccccccccccchhHHHHHHHHHHhc---cCHHHHhhhcce-eeec-CCCC-------CChHHHHHHHHHHHHh
Confidence 111111011111 1334444455444332 255666777777 6655 2211 5678888888888777
Q ss_pred CcccHHHHHHhHHHHHhc---CCchHHHHHHHHHHHHh
Q 001618 626 HTSNLYAANGAGVVLAEK---GQFDVSKDLFTQVQEAA 660 (1043)
Q Consensus 626 ~P~~~~a~~~la~~~~~~---g~~~~A~~~~~~~~~~~ 660 (1043)
. ..+.+++|.++... ..+..|..++.++.+..
T Consensus 505 ~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 505 G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 6 77778888887753 12677777777777654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00032 Score=50.77 Aligned_cols=41 Identities=39% Similarity=0.510 Sum_probs=29.2
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
+++.+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46667777777777777777777777777777777766654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.17 Score=54.20 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 001618 187 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254 (1043)
Q Consensus 187 ~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 254 (1043)
.++..++.+++..+......+|...++.+-...|+.+.++..-..+....++.+.+...+.+++....
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44667777787777767777888888887777788777776666666667888888888888876543
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.11 Score=55.69 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=96.7
Q ss_pred HHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHh
Q 001618 413 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 492 (1043)
Q Consensus 413 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 492 (1043)
....|+++.|..++.++-.... ...+ ........++++.|.....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~---~~~~--------------------------------~~~~~La~~~yn~G~~l~~ 47 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN---SLDP--------------------------------DMAEELARVCYNIGKSLLS 47 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh---cCCc--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3568999999999998865310 0000 0011345688999999999
Q ss_pred cC-ChHHHHHHHHHHHHhC----------cCc----HHHHHHHHHHHHHcCChh---HHHHHHHHHHHHcCCChHHHHHH
Q 001618 493 IH-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSML 554 (1043)
Q Consensus 493 ~g-~~~~A~~~~~~~l~~~----------p~~----~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l 554 (1043)
.+ +++.|..++++++..- |+. ..++..++.++...+.++ .|..+++.+-...|+.+.++...
T Consensus 48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK 127 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 99 9999999999998762 111 446777888888777654 46666777777789988888777
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCC
Q 001618 555 GDLELKNDDWVKAKETFRAASDATD 579 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~ 579 (1043)
-.+..+.++.+.+.+.+.+++...+
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcc
Confidence 7777778999999999999988655
|
It is also involved in sporulation []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.066 Score=59.98 Aligned_cols=151 Identities=14% Similarity=0.045 Sum_probs=88.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCCCC
Q 001618 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEF 296 (1043)
Q Consensus 219 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~ 296 (1043)
.......+..++.+....|.++.|...+..+...... ....+.+.+..+..+...|+..+|+..+...+. ..... ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~-~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN-ID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-cc
Confidence 3455677888888999999999998888888764322 222567888888899999999999988888776 22111 00
Q ss_pred hhhHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHH
Q 001618 297 IFPYYGLGQVQLK--LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL------GQIEKAQELLRKAAKIDPRDAQAF 368 (1043)
Q Consensus 297 ~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~~ 368 (1043)
......+...... ............. .....++..+|...... +..+.++..|..++...|....+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESK-----ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhH-----HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 0000000000000 0000000000000 01234555666666555 677777777777777777777777
Q ss_pred HHHHHHH
Q 001618 369 IDLGELL 375 (1043)
Q Consensus 369 ~~la~~~ 375 (1043)
+.+|..+
T Consensus 296 ~~~a~~~ 302 (352)
T PF02259_consen 296 HSWALFN 302 (352)
T ss_pred HHHHHHH
Confidence 7776654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.015 Score=59.71 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 143 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~ 143 (1043)
..-+..+.-....|++..|...|..++...|.+..+.+.++.++...|+.+.|..++..+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 334445555666666666666666666666666666666666666666666666555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.041 Score=59.72 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=126.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchh
Q 001618 401 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480 (1043)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1043)
..+.+..++-..|....+|+.-+.+.+..-.... -..+..+
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~---------------------------------------~~~~~~~ 179 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPT---------------------------------------CDVANQH 179 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc---------------------------------------cchhcch
Confidence 3467777888889999999988888877654210 0123466
Q ss_pred HHHHhHHHHHHh---cCChHHHHHHHHHH-HHhCcCcHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHHcCCC
Q 001618 481 TVLFNLARLLEQ---IHDTVAASVLYRLI-LFKYQDYVDAYLRLAAIAKAR---------NNLQLSIELVNEALKVNGKY 547 (1043)
Q Consensus 481 ~~~~~la~~~~~---~g~~~~A~~~~~~~-l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 547 (1043)
.+.+..|.++.+ .|+.++|+.++..+ ....+.+++++..+|.+|... ...++|+.+|.+++..+|+
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~- 258 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD- 258 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-
Confidence 778888999888 99999999999984 455667899999999987543 2467899999999999964
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhh--------h---cCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAAS--------D---ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l--------~---~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
...-.+++.++...|.......-+.++. . ..+..+.+....+..+ .... +++++|.
T Consensus 259 ~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea-~vL~------------~d~~ka~ 325 (374)
T PF13281_consen 259 YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEA-SVLA------------GDYEKAI 325 (374)
T ss_pred ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHc------------CCHHHHH
Confidence 4445566666666665322222222211 1 1233455666666666 6666 9999999
Q ss_pred HHHHHHHccCcccHHHHHH
Q 001618 617 ELYTRVIVQHTSNLYAANG 635 (1043)
Q Consensus 617 ~~~~~~l~~~P~~~~a~~~ 635 (1043)
+.+++++...|...+.-.+
T Consensus 326 ~a~e~~~~l~~~~W~l~St 344 (374)
T PF13281_consen 326 QAAEKAFKLKPPAWELEST 344 (374)
T ss_pred HHHHHHhhcCCcchhHHHH
Confidence 9999999998876654433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.38 Score=56.85 Aligned_cols=240 Identities=15% Similarity=0.079 Sum_probs=147.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcC---------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCCh-
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 548 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 548 (1043)
.+......+.......++.+|..+..++...-|. .....-..+.+....|+++.|..+.+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4445555666777778888888887777654333 133444556677788899999999998888877653
Q ss_pred ----HHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHH-----HhhhHHHHHHHhhcccChhHHhhh--HHHHHH
Q 001618 549 ----NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-----SLGNWNYFAALRNEKRAPKLEATH--LEKAKE 617 (1043)
Q Consensus 549 ----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-----~lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 617 (1043)
.+...+|.+..-.|++.+|..+...+.+.....+.+.+. .-+.+ .... |. +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 366778888888899999988888877764443433221 11222 2222 42 222222
Q ss_pred H----HHHHHccCcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCc-hhHHHhHHHHHHHccCHHHHHHH
Q 001618 618 L----YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQM-PDVWINLAHVYFAQGNFALAMKM 691 (1043)
Q Consensus 618 ~----~~~~l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~ 691 (1043)
. +.+-+...|...+.....+.++...-+++.+..-....++.... .+.+.. .-++++|+.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2 23334445665556555555554443466666555555554321 111111 22335899999999999999999
Q ss_pred HHHHHHHhcCCC---C--HHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 001618 692 YQNCLRKFYYNT---D--AQILLYLARTHYEAEQWQDCKKSLLRA 731 (1043)
Q Consensus 692 ~~~al~~~~~~~---~--~~~l~~la~~~~~~g~~~~A~~~~~ka 731 (1043)
+..+......+. + ..+.......+...|+...|..++.+.
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 999888765542 1 122222234456689999998887763
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0054 Score=58.59 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=83.9
Q ss_pred HHHHHHHHHHccCcccHHHH---HHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHH
Q 001618 614 KAKELYTRVIVQHTSNLYAA---NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 690 (1043)
Q Consensus 614 ~A~~~~~~~l~~~P~~~~a~---~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 690 (1043)
+......+....+|.+.++. ..++..+...|++++|+..++.++....++.+ .+-+-.+|+.+.+.+|++++|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l--k~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL--KALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH--HHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444455555666666543 45688888899999999999988764432211 24566788899999999999998
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 691 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 691 ~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
.+...-.. .=.+.+....|.++...|+..+|+..|++++...+++
T Consensus 148 ~L~t~~~~---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 148 TLDTIKEE---SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHhccccc---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 86554221 0114556678899999999999999999998887544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.63 Score=52.96 Aligned_cols=244 Identities=14% Similarity=0.143 Sum_probs=147.3
Q ss_pred HHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-------HHhHHHHHHHHHHHH
Q 001618 144 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-------AAGIRKGMEKMQRAF 216 (1043)
Q Consensus 144 l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-------~~~~~~A~~~~~~al 216 (1043)
++-+|.. ..|..++......-.++-|..+|-+.-. .|. ......|+.++....+ .+.+++|...|-.+-
T Consensus 686 iEdnPHp--rLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d 761 (1189)
T KOG2041|consen 686 IEDNPHP--RLWRLLAEYALFKLALDTAEHAFVRCGD-YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD 761 (1189)
T ss_pred HhcCCch--HHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc
Confidence 3345553 5666677766666666777776665432 111 1122223333222111 233777777765432
Q ss_pred HhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCC
Q 001618 217 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 296 (1043)
Q Consensus 217 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 296 (1043)
..+ ....++...|+|-.+.+++..--. ...+.....++..+|..+.....+++|.++|.....
T Consensus 762 rrD--------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 762 RRD--------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred hhh--------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 221 234566778888888777764321 112234467899999999999999999999987653
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001618 297 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376 (1043)
Q Consensus 297 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 376 (1043)
.-+++.+++....|++-. .+...-|++...+-.+|.++...|--++|+..|-+.- .|. + .+..+..
T Consensus 825 ---~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a--Av~tCv~ 890 (1189)
T KOG2041|consen 825 ---TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A--AVHTCVE 890 (1189)
T ss_pred ---hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H--HHHHHHH
Confidence 345667777777776643 3344458888999999999999999999998886531 221 1 1222335
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001618 377 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 429 (1043)
Q Consensus 377 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 429 (1043)
..+|.+|.++.++.. .|. ...+....+.-+...++.-+|++...++
T Consensus 891 LnQW~~avelaq~~~--l~q-----v~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQ--LPQ-----VQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHhcc--chh-----HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 567777776544321 111 1223333444556777788888877766
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.33 Score=54.33 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=98.7
Q ss_pred CcccHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHH-HhcCC--
Q 001618 626 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 702 (1043)
Q Consensus 626 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~-- 702 (1043)
.......+...+.+..+.|++..|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3446678889999999999999999999999886532211 2678899999999999999999999999888 32211
Q ss_pred ---------------------C-C-------HHHHHHHHHHHHhh------hcHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001618 703 ---------------------T-D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 747 (1043)
Q Consensus 703 ---------------------~-~-------~~~l~~la~~~~~~------g~~~~A~~~~~ka~~~~P~~~~~~~nla~ 747 (1043)
. . ..++..+|.-.... +..+++...|..+.++.|+....+++.|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 1 34455555555555 77788899999999999999999999999
Q ss_pred HHHHHHH
Q 001618 748 AMQKFSA 754 (1043)
Q Consensus 748 ~~~~~~~ 754 (1043)
.+.....
T Consensus 301 ~~~~~~~ 307 (352)
T PF02259_consen 301 FNDKLLE 307 (352)
T ss_pred HHHHHHH
Confidence 8644433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0006 Score=74.01 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 141 (1043)
+..|+.|+..|.+++.++|+.+..+-.++..++..++|..|+.-+.++++.+|....+++..|.+.+..+.+.+|+..|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCCC
Q 001618 142 RALQVHPSC 150 (1043)
Q Consensus 142 ~~l~~~p~~ 150 (1043)
....+.|+.
T Consensus 97 ~~~~l~Pnd 105 (476)
T KOG0376|consen 97 KVKKLAPND 105 (476)
T ss_pred HhhhcCcCc
Confidence 555555555
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00077 Score=73.18 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
-..+..++..+.|+.|+.+|.+++.++|+++..+-..+..+++.++|..|+..+.++++.+|.. ...|+..|.++..++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3456777788889999999999999999998888888899999999999999999999999988 667888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
.+.+|+..|+....+.|+.+.+...+..+..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999998887766665543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.15 Score=55.17 Aligned_cols=125 Identities=18% Similarity=0.096 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.+|++..|-+.+..+++..|.+|......+.+....|.|+.|...+.-+-..-..-..+...+-+.++..|+++.|+...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 35777788888888999999999999999999999999999999987765554444556666777888999999999998
Q ss_pred HHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001618 141 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 141 ~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 186 (1043)
.-++.-.-+. +.+....+...-.+|-++++...|++++.++|...
T Consensus 381 ~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 381 EMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 8887665555 33333345556678899999999999999988643
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0043 Score=60.94 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRD----------NVPALLGQACVEFNRGRYSDSLEFYKRALQ 145 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~----------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~ 145 (1043)
.++...|+-++..|+|.+|...|..++.. .|. ..+.++..+.|+...|+|-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45666788888888888888877776532 232 233455555666666666666666666666
Q ss_pred hCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001618 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 146 ~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
..|.+ ..+++..|.+....=+..+|..-|.++|+++|.
T Consensus 259 ~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 66666 445566666666666666666666666666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.058 Score=55.46 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH-HH-
Q 001618 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LA- 193 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la- 193 (1043)
....-+..+.-....|++.+|...|..++...|.+ ..+.+.++.||...|+.+.|...+...-....+ ..+.. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHH
Confidence 34556777788889999999999999999999999 788999999999999999999887753221111 11211 11
Q ss_pred -HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHH
Q 001618 194 -VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 272 (1043)
Q Consensus 194 -~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~ 272 (1043)
.++..... .. -...+.+.+..+|++..+.+.++..+...|+++.|...+-.++.... ...+..+...+..++..
T Consensus 210 i~ll~qaa~---~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 210 IELLEQAAA---TP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-GFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHhc---CC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccCcHHHHHHHHHHHh
Confidence 22222221 11 12446666778899999999999999999999988888877776532 22334455555555555
Q ss_pred cCCHHHH
Q 001618 273 KGDYEKA 279 (1043)
Q Consensus 273 ~g~~~~A 279 (1043)
.|.-+.+
T Consensus 285 ~g~~Dp~ 291 (304)
T COG3118 285 FGPADPL 291 (304)
T ss_pred cCCCCHH
Confidence 5533333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00048 Score=46.31 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=17.8
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001618 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 103 (1043)
Q Consensus 72 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 103 (1043)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.95 Score=52.20 Aligned_cols=251 Identities=11% Similarity=-0.009 Sum_probs=127.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHH-HHHHHHHHHcCChh-HHHHHHHHHHHHcCCChH--HHHHH
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY-LRLAAIAKARNNLQ-LSIELVNEALKVNGKYPN--ALSML 554 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~--~~~~l 554 (1043)
..-+++.+|.++...|.- ...++...+....+.+..+ ..||.-+..+|.-. +-.+.++..+..+..-.. +-..+
T Consensus 396 EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred ccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 445788888888877764 7778777776554332222 22333344444322 233334444443332221 33344
Q ss_pred HHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccC-cc-cHHH
Q 001618 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH-TS-NLYA 632 (1043)
Q Consensus 555 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~-~~~a 632 (1043)
|.+.+...+ .+|+.-+...-.........--+.+|.. +... |..+.|-.+.++++.-. |- -..-
T Consensus 474 Gl~mlGt~~-~eaiedm~~Ya~ETQHeki~RGl~vGia-L~~y------------grqe~Ad~lI~el~~dkdpilR~~G 539 (929)
T KOG2062|consen 474 GLLMLGTAN-QEAIEDMLTYAQETQHEKIIRGLAVGIA-LVVY------------GRQEDADPLIKELLRDKDPILRYGG 539 (929)
T ss_pred hhHhhCcCc-HHHHHHHHHHhhhhhHHHHHHHHHHhHH-HHHh------------hhhhhhHHHHHHHhcCCchhhhhhh
Confidence 544444433 3344422222111111111112233333 3344 77778888888887543 32 2234
Q ss_pred HHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 001618 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 712 (1043)
Q Consensus 633 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la 712 (1043)
.+.++..|+-.|+...-..++.-++. .++ ++..-..-+|.-+.-..+++.-....+-..+.|...-..-+-..||
T Consensus 540 m~t~alAy~GTgnnkair~lLh~aVs-D~n----DDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALG 614 (929)
T KOG2062|consen 540 MYTLALAYVGTGNNKAIRRLLHVAVS-DVN----DDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALG 614 (929)
T ss_pred HHHHHHHHhccCchhhHHHhhccccc-ccc----hHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHh
Confidence 56778888888887554444443332 221 2222222223333333466666666554444431111244556788
Q ss_pred HHHHhhhcHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHH
Q 001618 713 RTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQKF 752 (1043)
Q Consensus 713 ~~~~~~g~~~~A~~~~~ka~~~~P~~---~~~~~nla~~~~~~ 752 (1043)
.+|.-.|. .+|+.+++-+.. +|.+ ..+...+|+|+-.+
T Consensus 615 IaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 615 IACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhc
Confidence 88888887 678888887765 6765 34555566665333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=44.22 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
.+++.+|.+++..|++++|+..|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466677777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0071 Score=59.43 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHH
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
..++..-|.-++..|+|.+|...|..|+..-...... ....... -+.+.....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lk-EkP~e~e------------------------W~eLdk~~tpL 232 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLK-EKPGEPE------------------------WLELDKMITPL 232 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhc-cCCCChH------------------------HHHHHHhhhHH
Confidence 3456667888899999999999999988632111100 0000000 00022335678
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChH
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 549 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (1043)
+.|.+.|+...|++-++++....++..+|.++.+|+..|.+....=+..+|...|.+++.++|.-..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 8899999999999999999999999999999999999999999888999999999999999987544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00082 Score=45.16 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001618 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSL 137 (1043)
Q Consensus 106 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al 137 (1043)
|+++++.+|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777775
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.09 Score=52.66 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=144.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 144 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~~l 144 (1043)
.|+++-..++..+|.+..+|..+-.++-..+ ++.+-+.++..++..+|.|..+|...-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988777666554 6788899999999999999999999988888899988 8899999999
Q ss_pred HhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hh--HHhHHHHHHHHHHHHHhCCC
Q 001618 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NE--AAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 145 ~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~--~~~~~~A~~~~~~al~~~p~ 221 (1043)
..+..+ -.+|-..--|+...+.++.-+.+...+++.+-.|-.+|...-.+.... |- ....+.-+.+..+.+.+.|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988877 566777778888888899999999999998887777776543322221 11 12356677888899999999
Q ss_pred cHHHHHHHHHHHHh-cC--CHHHHHHHHHHHH
Q 001618 222 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 250 (1043)
Q Consensus 222 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~~l 250 (1043)
|..+|+.|..++.. .| .+.....++..+.
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999988876 44 1333444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.91 E-value=2.8 Score=55.28 Aligned_cols=391 Identities=12% Similarity=0.033 Sum_probs=203.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 001618 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 307 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~ 307 (1043)
.++.+-++.+.|..|..++++-.............++.+-.+|...++++.-..+...-.. . ..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~----~sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----D----PSLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----C----ccHHHHHHHH
Confidence 5677778888888888888774211111112223344555578888887776665543111 1 1244445566
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHH
Q 001618 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALD 385 (1043)
Q Consensus 308 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~ 385 (1043)
...|++..|..+|+++++..|+....+...-...+..|.+...+...+-.....++...-|..++.-- ..++|+.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 67788888888888888888877766666666666667777766665555444444444444444322 4444443322
Q ss_pred HHH-------HHH---HHHHhcCCCCcHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhh------
Q 001618 386 AFK-------TAR---TLLKKAGEEVPIEV-----------LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL------ 438 (1043)
Q Consensus 386 ~~~-------~a~---~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 438 (1043)
++. .+. .+.-.......... ..++..+ ...|.|..+..+.-+....+.....
T Consensus 1540 ~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~-s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1540 YLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSAC-SIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred hhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 211 000 00000000000000 0011111 1112333444433333322211000
Q ss_pred cccccchhhhhhhhhHHH---------hh--hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHH
Q 001618 439 LDSKTKTYVIDASASMLQ---------FK--DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 507 (1043)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 507 (1043)
.+.... ...+...|... .+ .+.+...+...............+|.+.|++....|.++.|....-.+.
T Consensus 1619 ~s~~~~-s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1619 VSYDED-SANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred cCcccc-ccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 000000 00000001000 00 1111111111111223556788999999999999999999998888777
Q ss_pred HhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc-CC----------ChH------HHHHHHHHhhhccc--hHHHH
Q 001618 508 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GK----------YPN------ALSMLGDLELKNDD--WVKAK 568 (1043)
Q Consensus 508 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~~~------~~~~l~~~~~~~g~--~~~A~ 568 (1043)
+.. -+.++...|..++..|+...|+..+++.+..+ |+ ... +...++...-..++ -..-+
T Consensus 1698 e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~il 1775 (2382)
T KOG0890|consen 1698 ESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDIL 1775 (2382)
T ss_pred hcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 665 46788999999999999999999999999765 22 111 22233333333444 34556
Q ss_pred HHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHH---HHHHHHHHHccCcccHHH
Q 001618 569 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK---AKELYTRVIVQHTSNLYA 632 (1043)
Q Consensus 569 ~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~P~~~~a 632 (1043)
+.|..+....+. ....++.+|.. |-......+.+.....|++.. ++-.|.+++..+...++.
T Consensus 1776 k~Y~~~~ail~e-we~~hy~l~~y-y~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1776 KYYHDAKAILPE-WEDKHYHLGKY-YDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHHHHHHHHccc-ccCceeeHHHH-HHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH
Confidence 777888777663 22233345533 333222222233333466666 777777888776555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.87 E-value=1.6 Score=51.88 Aligned_cols=276 Identities=17% Similarity=0.063 Sum_probs=164.5
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cc
Q 001618 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-----DN 330 (1043)
Q Consensus 257 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 330 (1043)
+...+.+..-+..+...|...+|+...-.+- +|... ......+.-++..++..- +..+++.-| .+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 3446677777888888888888887765543 12221 112223333444444433 222333333 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001618 331 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 400 (1043)
Q Consensus 331 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 400 (1043)
+......+.......++.+|..++.++...-+. . ....-..+.+. ..++++.|....+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 566777788888889999999998887654322 1 12222233444 7899999999999999988876555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchh
Q 001618 401 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 480 (1043)
Q Consensus 401 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1043)
.....+..+|.+..-.|++++|..+...+.+.... .+......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~-------------------------------------~~~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ-------------------------------------HDVYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH-------------------------------------cccHHHHH
Confidence 55778888999999999999999999988764210 00122344
Q ss_pred HHHHhHHHHHHhcCChHHHH--HHHHHH----HHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHH----cCCChH-
Q 001618 481 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 549 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~- 549 (1043)
.+.+..+.++..+|+...|. ..|..+ +...|.........+.++...-+++.+..-....+.. .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 56666788888888433333 333322 2233332222222222222222244444333333333 233322
Q ss_pred --HHHHHHHHhhhccchHHHHHHHHHhhhcC
Q 001618 550 --ALSMLGDLELKNDDWVKAKETFRAASDAT 578 (1043)
Q Consensus 550 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 578 (1043)
+.++++.+++..|++++|...+..+....
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 23467888888888888888888776644
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.002 Score=43.52 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCC
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 737 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~ 737 (1043)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=1.9 Score=53.41 Aligned_cols=124 Identities=23% Similarity=0.199 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001618 62 EEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAK----G---EVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 131 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~----g---~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g 131 (1043)
.+.|+.|+..|+++....|.- -++.+..|..++.+ | .+.+|+..|+... ..|.-|.-+++.|.+|.+.|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 566 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLG 566 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhh
Confidence 567889999999988888864 35777777777654 3 4777888887653 45667788899999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHc----CCHHHHHHHHHHHHhhCCCcH
Q 001618 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL----GQLGKARQAFQRALQLDPENV 186 (1043)
Q Consensus 132 ~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~ 186 (1043)
+|.+-+++|.-+++..|..+...++.--.||... .+-..|....--++..-|...
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 567 EYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred hHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 9999999999999998888544433222222110 122344444455555556543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.06 Score=51.70 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
.+...++..+...|++++|...++.++....+......+-..++.+++..|.+++|+..+...-.. .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 345667777788888888888888777432222223445667888888888888888777654321 1123345667888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPR 363 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~ 363 (1043)
+...|+..+|+..|.+++...+.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 88888888888888888877643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0019 Score=43.65 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 115 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 115 (1043)
.+|+.+|.+++.+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555566666666666666666666655554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0027 Score=42.81 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 115 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 115 (1043)
+|+.+|.+++..|++++|+..|++++..+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.7 Score=51.02 Aligned_cols=236 Identities=9% Similarity=-0.005 Sum_probs=122.9
Q ss_pred HHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 001618 481 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559 (1043)
Q Consensus 481 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 559 (1043)
..+..+.......|.+..-...+++++...+.....|+..+...- .++-...+...+..++...|-...+|...-..+.
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 344444455556666666666777777766666666666655432 2333334445555555555554444443332222
Q ss_pred hccc-hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccC--hhHHhhhHHHHHHHHHHHHccCcc-cHHHHHH
Q 001618 560 KNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA--PKLEATHLEKAKELYTRVIVQHTS-NLYAANG 635 (1043)
Q Consensus 560 ~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~--~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~~ 635 (1043)
+.+. ...-...+.+.+...-. +...... |+..--..... -..-+..|..|...|.......-+ ....+..
T Consensus 393 R~re~~~vI~~~l~~~ls~~~~-----l~~~~~~-~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~ 466 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSMTVE-----LHNDYLA-YRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQL 466 (881)
T ss_pred hcCcchhhHHHHHHHHHHHHHH-----HHHHHHH-HHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 2221 12222223332221000 0000000 11110000000 001136677788877776665211 2334445
Q ss_pred hHHHHH-hcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q 001618 636 AGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLAR 713 (1043)
Q Consensus 636 la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~ 713 (1043)
.|.+.+ .+++++.|+.+.+.+..... . .....|+....+-...|+...+..++.+|+..-..+.+ -.++...-+
T Consensus 467 wA~~E~sl~~nmd~~R~iWn~imty~~-~---~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r 542 (881)
T KOG0128|consen 467 WAQVEASLLKNMDKAREIWNFIMTYGG-G---SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRR 542 (881)
T ss_pred HHHHHHHHhhchhhhhHhhhccccCCc-c---hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHH
Confidence 566655 46899999999988876542 1 23337888888888889999999999999876444433 345555555
Q ss_pred HHHhhhcHHHHHH
Q 001618 714 THYEAEQWQDCKK 726 (1043)
Q Consensus 714 ~~~~~g~~~~A~~ 726 (1043)
.....|.++....
T Consensus 543 ~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 543 FEREYGTLESFDL 555 (881)
T ss_pred HHhccccHHHHhh
Confidence 5555566655443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.092 Score=57.34 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001618 133 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 212 (1043)
Q Consensus 133 ~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 212 (1043)
.+.-+.+|++|++.+|.+ ..+++.+-.+.....+.+....-|++++..+|++...|..+-......-..-.+......|
T Consensus 47 ~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345567777777777766 5666666666667777777777788888777777777665554433321111144555555
Q ss_pred HHHHH
Q 001618 213 QRAFE 217 (1043)
Q Consensus 213 ~~al~ 217 (1043)
.+++.
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=1.5 Score=54.19 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCCCChhhH
Q 001618 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPY 300 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~~~~~~~~~~~ 300 (1043)
..-.++...+.|+.|+..|.++....+.-..-.++.+..|..+..+ | .+.+|+.-|++.. ..+..+.-|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHH
Confidence 3456677778888888888888876655555567788888777643 2 4778888887766 566777779
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Q 001618 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 343 (1043)
Q Consensus 301 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 343 (1043)
++.|.+|...|++++-+++|.-+++.+|..+.+-...-.+.++
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR 598 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999887655444444333
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.11 Score=54.08 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=68.2
Q ss_pred chhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHH
Q 001618 668 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 745 (1043)
Q Consensus 668 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nl 745 (1043)
.+..|-.-|+-|++..+|..|+..|.+.++.-...++ ..++.+-+-+.+..|++..|+.-+.+++.++|.+.-+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3445556688899999999999999999987444444 66778889999999999999999999999999998887777
Q ss_pred HHHH
Q 001618 746 GVAM 749 (1043)
Q Consensus 746 a~~~ 749 (1043)
|.|+
T Consensus 160 Akc~ 163 (390)
T KOG0551|consen 160 AKCL 163 (390)
T ss_pred hHHH
Confidence 7774
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.65 E-value=2.2 Score=50.29 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 375 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~- 375 (1043)
..|..+.......|....-...+++++...+.+...|...+...- .++-...+...+.+++...|-...+|-..-..+
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAle 392 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALE 392 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHH
Confidence 345556666667788777777888888777777777776665442 234444555666666666666665554433333
Q ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcchhhhhhcccccchhhh
Q 001618 376 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE------FESAHQSFKDALGDGIWLTLLDSKTKTYVI 448 (1043)
Q Consensus 376 ~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 448 (1043)
..+ ....-...+.+++.. ....++.........++ ++.-...|+.|...
T Consensus 393 R~re~~~vI~~~l~~~ls~--------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~e---------------- 448 (881)
T KOG0128|consen 393 RNREEITVIVQNLEKDLSM--------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEE---------------- 448 (881)
T ss_pred hcCcchhhHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH----------------
Confidence 222 122222222222221 01111111111122222 22222223332221
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHH-hcCChHHHHHHHHHHHHhCcCcHH-HHHHHHHHHHH
Q 001618 449 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE-QIHDTVAASVLYRLILFKYQDYVD-AYLRLAAIAKA 526 (1043)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~ 526 (1043)
+...... .-.....++...|.++. .+++.+.+..++..++...-.... .|+....+-..
T Consensus 449 --------------Lt~~~~~-----~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~ 509 (881)
T KOG0128|consen 449 --------------LTELYGD-----QLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE 509 (881)
T ss_pred --------------HHHHhhh-----hhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH
Confidence 0000000 00113344445555543 457888899988887765554444 77777777778
Q ss_pred cCChhHHHHHHHHHHHHcCCC---hHHHHHHHHHhhhccchHHHHHHHHH
Q 001618 527 RNNLQLSIELVNEALKVNGKY---PNALSMLGDLELKNDDWVKAKETFRA 573 (1043)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 573 (1043)
.|+...+..+++.++..-... ..++..+-.+....|.++.......+
T Consensus 510 ~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 510 YGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred hCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 899999999888877643222 22444444444555666655554443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.6 Score=47.64 Aligned_cols=129 Identities=14% Similarity=0.057 Sum_probs=97.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHH
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 171 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A 171 (1043)
-.+..|+.-.|-..+..++...|..|......+.+....|+|+.++..+.-+-..-... ....-.+-.....+|+++.|
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHH
Confidence 34567888889999999999999999999999999999999999998887654443222 12233355667788999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001618 172 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 224 (1043)
Q Consensus 172 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 224 (1043)
...-.-++...-.++++...-+......+- ++++...+.+.+.++|....
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhcc
Confidence 998888887666666666555554455555 89999999999999876443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=2.3 Score=48.72 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=45.8
Q ss_pred CchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHH
Q 001618 477 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 556 (1043)
Q Consensus 477 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 556 (1043)
|++...+-.+|.++...|.-++|.+.|-+.- .|.- ....+..++++.+|.++.++.. -|.-..+....+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aa 918 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAA 918 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHH
Confidence 4566667777888888888888877665421 1211 1122344556666666554421 1222222333333
Q ss_pred HhhhccchHHHHHHHHHh
Q 001618 557 LELKNDDWVKAKETFRAA 574 (1043)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~ 574 (1043)
-++..++..+|++..+++
T Consensus 919 qll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhhcchHHHHHHhhhc
Confidence 344555666666665554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=57.17 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=104.0
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 001618 74 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 124 (1043)
Q Consensus 74 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~p------------~~---~~a~~~la 124 (1043)
..++.+|.++++++.++.++..+|++..|..++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 446789999999999999999999999999988887531 11 12 23556667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHH
Q 001618 125 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 198 (1043)
Q Consensus 125 ~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 198 (1043)
..+.+.|-+..|+++.+-++.++|. ++-.+++.+-....+.++++--+..++........ -+...+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7788889999999999999999998 76677777777777888887777776665442111 11334444455554
Q ss_pred hhhH------------HhHHHHHHHHHHHHHhCCCcH
Q 001618 199 ANEA------------AGIRKGMEKMQRAFEIYPYCA 223 (1043)
Q Consensus 199 ~~~~------------~~~~~A~~~~~~al~~~p~~~ 223 (1043)
.++. ...+.|...+.+++...|...
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 4441 112667777777777766443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.24 Score=49.71 Aligned_cols=203 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHH-hcCC
Q 001618 311 GDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQ-AFIDLGELL-ISSD 379 (1043)
Q Consensus 311 g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~-~~~~la~~~-~~~~ 379 (1043)
..+++|+..|.+++.+.+.. ..++..+..++++++++++-...|.+++.. ..+... ....+-... ...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 46777888888888776653 346666777888888888888888777642 111111 111111111 3333
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhh
Q 001618 380 TGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458 (1043)
Q Consensus 380 ~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (1043)
.+--...|+..+..+... .+.........+|.+|+..|+|..-...+++....|...+--+...
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k--------------- 185 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK--------------- 185 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh---------------
Confidence 444444555555554442 2222344556789999999999998888888777654211110000
Q ss_pred hhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCc--HHH----HHHHHHHHHHcCChhH
Q 001618 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDA----YLRLAAIAKARNNLQL 532 (1043)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~----~~~la~~~~~~g~~~~ 532 (1043)
.......++..-..+|..+.+...-..+|++++.+...- +.. .-.-|.++...|.+++
T Consensus 186 ----------------KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 186 ----------------KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEK 249 (440)
T ss_pred ----------------ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHH
Confidence 111233445555566777777677777777777643321 111 1111233555566666
Q ss_pred HHHHHHHHHHHc
Q 001618 533 SIELVNEALKVN 544 (1043)
Q Consensus 533 A~~~~~~al~~~ 544 (1043)
|...|-.+++..
T Consensus 250 AhTDFFEAFKNY 261 (440)
T KOG1464|consen 250 AHTDFFEAFKNY 261 (440)
T ss_pred HHhHHHHHHhcc
Confidence 666665555543
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.72 Score=46.51 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=40.9
Q ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001618 309 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 381 (1043)
Q Consensus 309 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~ 381 (1043)
+...-..|+.+...++..+|.+..+|...-.++..++ +..+-+.++..++..+|.+..+|...-.+. ..|++.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 3444555666666666666666666655555554443 445555666666666666666665555555 444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.16 Score=48.26 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
.+...+......|+...++..+.+++.....+.-..... ..+- .....+... ...++..++..
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~------~~~~~~~l~~~ 71 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL------YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 334446666778888889999988887553221111000 1111 111222222 34577778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-cCCCCcHH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-AGEEVPIE 404 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~ 404 (1043)
+...|+++.|+..+.+++..+|.+..++..+..++ ..|+...|+..|.++...+.. .+..+++.
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 99999999999999999999999999999999999 999999999999999887764 35444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.033 Score=57.62 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
-|+-|+...+|..|+.+|...|+..-. +...|...|-+.+..|+|..|+..+.+++..+|.+ .-+++.-+.|++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhHHHHH
Confidence 355555555555555555555544221 23344555555555555555555555555555555 3444555555555
Q ss_pred cCCHHHHHHHHHHHHhh
Q 001618 165 LGQLGKARQAFQRALQL 181 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~ 181 (1043)
+..+..|..+.+..+++
T Consensus 166 Le~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 55555555555554443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.47 Score=51.41 Aligned_cols=172 Identities=19% Similarity=0.117 Sum_probs=115.9
Q ss_pred hcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHcCCChHHHHHHHHHhhh----ccc
Q 001618 492 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 563 (1043)
Q Consensus 492 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~ 563 (1043)
..+.+..|...+..+-.. ....+...++.++... .+...|..+|.. .....++.+.+.+|.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccC
Confidence 446777777777776552 2236677777777654 357789999984 4456678889999999887 458
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcccHHHHHHhHHHHHhc
Q 001618 564 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 643 (1043)
Q Consensus 564 ~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~~la~~~~~~ 643 (1043)
..+|..+|.++......+...+...++.+ |.... ... .-..+...|+..|.++.... ++.+...+|.+|...
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~----~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QAL----AVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhh----cccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999987654334446667766 55541 000 00034457888888877665 566677777777653
Q ss_pred ----CCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHcc
Q 001618 644 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 683 (1043)
Q Consensus 644 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g 683 (1043)
.++.+|..+|.++.+.. + ....++++ +++..|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 37778888888887765 3 66777777 666555
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.21 E-value=7.4 Score=51.65 Aligned_cols=327 Identities=12% Similarity=0.031 Sum_probs=179.4
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHH-HHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA-ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 79 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~-~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~ 79 (1043)
+|++=++-|-|.+|...+|+-...+. +.+.-. .+..|-.+|..++..... .-... ....+
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek-------~~~~~e~l~fllq~lY~~i~dpDgV-----------~Gv~~-~r~a~ 1449 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEK-------EKETEEALYFLLQNLYGSIHDPDGV-----------EGVSA-RRFAD 1449 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHHhcCCcchh-----------hhHHH-HhhcC
Confidence 35566777788888888887522221 122222 233344467666655411 11111 01223
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 80 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 80 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
| .+..........|++..|..+|+++++.+|+....+.+.-...+..|.+...+...+-.....++........--
T Consensus 1450 ~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~ 1525 (2382)
T KOG0890|consen 1450 P----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGV 1525 (2382)
T ss_pred c----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHH
Confidence 3 455566667778999999999999999999988888888888889999999888777666555554333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHh--HHHHHHHHHHHHHhCC--------CcHHHHHHH
Q 001618 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG--IRKGMEKMQRAFEIYP--------YCAMALNYL 229 (1043)
Q Consensus 160 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~--~~~A~~~~~~al~~~p--------~~~~~~~~l 229 (1043)
.+-|.+++++.-..+.. ..+-.+..+.. +|.+.......+. ..+.++..+..+ +.| .....+..+
T Consensus 1526 eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1526 EAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred HHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHHH
Confidence 44588888877665544 12222333321 4554444332111 112232222211 111 001111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCCCChhhHHHH
Q 001618 230 ANHFFFTGQHFLVEQLTETALAVTNHG--PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHEFIFPYYGL 303 (1043)
Q Consensus 230 a~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~~~l 303 (1043)
..++... +.+ ............. ..+..-|.+....-....+..+-+-.+++++-... .......+|+..
T Consensus 1601 ~kLH~l~-el~---~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1601 MKLHLLL-ELE---NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHH-HHH---HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 1111000 000 0111111111111 11122222222221222223444444444443221 234567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001618 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361 (1043)
Q Consensus 304 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 361 (1043)
|++....|+++.|...+-.+.+.. -+.+....|..+...|+...|+.++++.+..+
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999888887765 56888899999999999999999999988653
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.1 Score=45.56 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHH
Q 001618 404 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 483 (1043)
Q Consensus 404 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1043)
.+-..++.+++..|.|.+|+......+..-. ..+..+...+++
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vh 168 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVH 168 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehh
Confidence 3445678889999999999998877665211 111345566677
Q ss_pred HhHHHHHHhcCChHHHHHHHHHHHH-----hCcCcHHHHH--HHHHHHHHcCChhHHHHHHHHHHHHcC---CChHHHHH
Q 001618 484 FNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVNG---KYPNALSM 553 (1043)
Q Consensus 484 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 553 (1043)
..-..+|....+..++..-+..+-. -+|....+-+ .-|..++.-.+|..|..+|-++++-.. .+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Confidence 7777788888888777776665543 2343333322 223445666788889888888877542 23333333
Q ss_pred HHHHhh---hccchHHHHHHHH--HhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc
Q 001618 554 LGDLEL---KNDDWVKAKETFR--AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 628 (1043)
Q Consensus 554 l~~~~~---~~g~~~~A~~~~~--~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 628 (1043)
+-.+.+ ..+..++....+. ..++...+....+....+.. |... ...+|..|+..|..-+..+|-
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea-~~NR----------sL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA-FGNR----------SLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH-hCCC----------cHhhHHHHHHHhhHHhccCHH
Confidence 222221 1222222222221 22222233334444444433 2211 116778888888777766654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.28 Score=46.65 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 298 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
.+...++..+...|+++.|+..+.+++..+|.+-.++..+..+|...|+...|+..|.++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0095 Score=39.72 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHHhc
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
+++++|.+|...|++++|+..|+.++..||
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344444444444445555555444444443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0085 Score=62.21 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=77.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCH
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~ 168 (1043)
.+.-.+..|.++.|+..|..++.++|.....+...+.+++.+++...|+..|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 34556677888888888888888888888888888888888888888888888888888887 55566778888888888
Q ss_pred HHHHHHHHHHHhhCCC
Q 001618 169 GKARQAFQRALQLDPE 184 (1043)
Q Consensus 169 ~~A~~~~~~al~~~p~ 184 (1043)
.+|...|..+.+++-+
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 8888888888877643
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.35 Score=53.44 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 001618 337 LGHIYVQLGQIEKAQELLRKAAKIDPR-DAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 413 (1043)
Q Consensus 337 la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 413 (1043)
....+.+.|-+..|+++.+-++.++|. ++-....+...| ..++++--+..++.............-|...+.++.++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 334444444555555555555555544 443333333333 33444433333332222100000001234566667777
Q ss_pred HHcCCH---------------HHHHHHHHHHHcchh
Q 001618 414 FEKGEF---------------ESAHQSFKDALGDGI 434 (1043)
Q Consensus 414 ~~~g~~---------------~~A~~~~~~al~~~~ 434 (1043)
+..++. +.|...+.+|+..-|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 777776 788888888887655
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.64 Score=50.82 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h---cCCHHHHHHHHH
Q 001618 313 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I---SSDTGAALDAFK 388 (1043)
Q Consensus 313 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~---~~~~~~A~~~~~ 388 (1043)
.+.-+.+|+++++.+|++..++..+-.+..+....++...-+++++..+|++..+|....... . .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999998877765 2 235778888888
Q ss_pred HHHHHHHhcCCCC-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcch
Q 001618 389 TARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 389 ~a~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 433 (1043)
+++..+....... -..++..+.......|-.+.|+..++-.++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888766542221 13566667778889999999999999999864
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.3 Score=47.91 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 133 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~----~g~~ 133 (1043)
...+..|...+..+... .++...+.++..|... .+..+|+.+|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 45667778877777552 2335666667666654 35777888888444 34467777778887776 4478
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhH
Q 001618 134 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 205 (1043)
Q Consensus 134 ~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 205 (1043)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++.... +..+.+.+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 888888888877754331233566666666531 2236777777766544 666777777666542 323346
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 001618 206 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237 (1043)
Q Consensus 206 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 237 (1043)
.+|...|.++-.... ...++.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 777777777776665 55566666 555544
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0047 Score=64.03 Aligned_cols=90 Identities=11% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001618 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 140 (1043)
Q Consensus 61 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 140 (1043)
.+|.++.|+..|..++.++|.....+..++.+++..++...|+.-|..++.++|+....+-..+.....+|++.+|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC
Q 001618 141 KRALQVHPSC 150 (1043)
Q Consensus 141 ~~~l~~~p~~ 150 (1043)
..+.+++-+-
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 9998876443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.12 Score=48.59 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 163 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~ 163 (1043)
..++....+-+..++.+.+..++.-+--..|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3556667777778888888888888888889988888889999999999999999999887777777 666777888888
Q ss_pred HcCCHH
Q 001618 164 KLGQLG 169 (1043)
Q Consensus 164 ~~g~~~ 169 (1043)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.016 Score=39.66 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+|.+||.+|..+|+|++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777776644
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.017 Score=38.87 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
+++.+|.++..+|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666555
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.023 Score=37.77 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCC
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~ 738 (1043)
.+++.+|.+++..|++++|+.+|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368899999999999999999999999999975
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.02 Score=38.48 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~P 736 (1043)
+++.+|.+|...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555544
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.2 Score=44.85 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcC
Q 001618 344 LGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKG 417 (1043)
Q Consensus 344 ~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~la~~~~~~g 417 (1043)
...+++|+..|.+++++.+.- ..++-.+..++ ..+++++-+..|.+.+........ ..+....+.+...-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 347899999999999988664 34555666677 899999999999988877665321 122233333333333344
Q ss_pred CHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChH
Q 001618 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 497 (1043)
Q Consensus 418 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 497 (1043)
+.+.-..+|+..+..- .... ....-...-..+|.+|...+.+.
T Consensus 120 ~m~LLQ~FYeTTL~AL------------------------------kdAK-------NeRLWFKTNtKLgkl~fd~~e~~ 162 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDAL------------------------------KDAK-------NERLWFKTNTKLGKLYFDRGEYT 162 (440)
T ss_pred hhHHHHHHHHHHHHHH------------------------------Hhhh-------cceeeeeccchHhhhheeHHHHH
Confidence 4444444444433310 0000 00001112235788888888888
Q ss_pred HHHHHHHHHHHhCcC------------cHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChH--HH----HHHHHHhh
Q 001618 498 AASVLYRLILFKYQD------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN--AL----SMLGDLEL 559 (1043)
Q Consensus 498 ~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~----~~l~~~~~ 559 (1043)
.-.++++++-..+.. -...|..-..+|..+.+...-..+|++++.+...-|. +. -.=|.+++
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHl 242 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHL 242 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccc
Confidence 877777776553321 2445666667788888888888889999887644333 22 23356788
Q ss_pred hccchHHHHHHHHHhhhcCCC
Q 001618 560 KNDDWVKAKETFRAASDATDG 580 (1043)
Q Consensus 560 ~~g~~~~A~~~~~~~l~~~~~ 580 (1043)
+.|.|++|..-|-.+.+.++.
T Consensus 243 reg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred ccchHHHHHhHHHHHHhcccc
Confidence 889999999999998886644
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.1 Score=50.45 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhh------------cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Q 001618 64 HFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------- 112 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------- 112 (1043)
-|.+|...|.-+.. ..|.+.+.++.++.++..+|+.+-|..+..++|-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 45566666665543 35777889999999999999988877777666531
Q ss_pred --CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChhHHHHhHHHHHHHcCCHHHHHHHHHHH-----Hhh
Q 001618 113 --DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQL 181 (1043)
Q Consensus 113 --~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----l~~ 181 (1043)
.|.|- .+++.....+.+.|-+..|+++++-++.++|. ++..+.+.+-....+..+|.=-+..++.. +..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 12232 23344455666789999999999999999998 65555555555555666776666666654 222
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001618 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 182 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 222 (1043)
-| |...-+.+|.+|+.......-..|...+.+|+...|..
T Consensus 413 ~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 413 LP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred cC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 33 34455667777777665445677888888888888743
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.15 Score=45.69 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=64.3
Q ss_pred chhHHHhHHHHHHHccC---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhH
Q 001618 668 MPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744 (1043)
Q Consensus 668 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~n 744 (1043)
.....|+++|++....+ ..+.+.+++..++..+....-..+++|+..+++.++|+.++.++..+++..|+|+.+.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 46788999999988754 567888999988732222237889999999999999999999999999999999876443
Q ss_pred HHHH
Q 001618 745 AGVA 748 (1043)
Q Consensus 745 la~~ 748 (1043)
--.+
T Consensus 111 k~~i 114 (149)
T KOG3364|consen 111 KETI 114 (149)
T ss_pred HHHH
Confidence 3333
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.7 Score=47.23 Aligned_cols=244 Identities=14% Similarity=0.085 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCC----hHHHHHHHHHhhhccchHHHHHHHH
Q 001618 497 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFR 572 (1043)
Q Consensus 497 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 572 (1043)
....+.+.......|..+...+..+.++...|+.+.|+..++..+. +.. .-.++-+++++.-+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455556666678888888888888888888887888888887766 222 2245567888888888999999988
Q ss_pred HhhhcCCCCCh-HHHHHhhhHHHHHHHhhccc---ChhHHhhhHHHHHHHHHHHHccCcccHH-----------------
Q 001618 573 AASDATDGKDS-YATLSLGNWNYFAALRNEKR---APKLEATHLEKAKELYTRVIVQHTSNLY----------------- 631 (1043)
Q Consensus 573 ~~l~~~~~~~~-~~~~~lg~~~y~~~~~~~~~---~~~~~~~~~~~A~~~~~~~l~~~P~~~~----------------- 631 (1043)
.+......+.. |++ ..|-+ |+...+.-.. +.....--.+.+...+..+-+..|-+.+
T Consensus 328 ~L~desdWS~a~Y~Y-fa~cc-~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTY-FAGCC-LLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHhhhhhhHHHHHH-HHHHH-HhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 88776554332 232 22233 4333211110 1111111111222222221122222211
Q ss_pred ---H--HHHhHHHHHhcCCchHHHHHHHHHHHH--hcCCC-CCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC-
Q 001618 632 ---A--ANGAGVVLAEKGQFDVSKDLFTQVQEA--ASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN- 702 (1043)
Q Consensus 632 ---a--~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 702 (1043)
+ +..+ +|.-.|--.-+..-+.++... .|... ..+..-.++.+|.++..+|+...|..+|..++......
T Consensus 406 ~~la~P~~El--~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~ 483 (546)
T KOG3783|consen 406 ILLASPYYEL--AYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT 483 (546)
T ss_pred ccccchHHHH--HHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 1 1222 222222111111122222222 23321 11233456778999999999999999999999654222
Q ss_pred CC----HHHHHHHHHHHHhhhc-HHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001618 703 TD----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPSNYTLRFDAGV 747 (1043)
Q Consensus 703 ~~----~~~l~~la~~~~~~g~-~~~A~~~~~ka~~~~P~~~~~~~nla~ 747 (1043)
.+ |.+++.+|..|...|. ..+|..++.+|..... |..+-..|.+
T Consensus 484 ~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~-dY~lenRLh~ 532 (546)
T KOG3783|consen 484 EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS-DYELENRLHM 532 (546)
T ss_pred cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc-ccchhhHHHH
Confidence 22 8999999999999988 9999999999977653 3344334433
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.11 Score=45.21 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=71.5
Q ss_pred ChHHHHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 001618 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 80 (1043)
Q Consensus 1 lA~~y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 80 (1043)
.|..||.+|+.-.|..|++..+...... . ...-++..-|.++..++....+...+--.+-.++..|.++....|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 3789999999999999999976542211 1 111344455667777766655555666667777777777777777
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 112 (1043)
Q Consensus 81 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 112 (1043)
..+..++.+|.-+-..--|+++....++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77777777776666666667777766666654
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.12 Score=59.21 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001618 806 YCKHLLD 812 (1043)
Q Consensus 806 ~~~~~l~ 812 (1043)
.+..+|.
T Consensus 218 ~~qe~La 224 (1064)
T KOG1144|consen 218 AMQEALA 224 (1064)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.27 Score=42.88 Aligned_cols=102 Identities=22% Similarity=0.161 Sum_probs=50.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChh--HHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001618 124 ACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 124 a~~~~~~g~~~~Al~~~~~~l~~~p~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
|.-++..|++-+|+++.+.++...++... .++...|.++..+. ...+..+....+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y----------- 59 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY----------- 59 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH-----------
Confidence 45556666666666666666666655421 33334444443221 111111111111
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001618 202 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 251 (1043)
Q Consensus 202 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 251 (1043)
...+++.|.++..+.|..+..++.+|.-+-....|+++..-.++.+.
T Consensus 60 ---Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 60 ---LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred ---HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22344555555555565566666666555555556666655555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.92 Score=42.74 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 001618 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 306 (1043)
Q Consensus 228 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 306 (1043)
..+.+....|+...|...|..+-.....+.. .-.+...-+.++...|.|++-....+-.-. +.+|-...+.-.||..
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~--d~n~mR~sArEALglA 176 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG--DGNPMRHSAREALGLA 176 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC--CCChhHHHHHHHHhHH
Confidence 3344444445555555555444432221111 112223333344444444444333332211 1223333344444555
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 001618 307 QLKLGDFRSALTNFEKVL 324 (1043)
Q Consensus 307 ~~~~g~~~~A~~~~~~~l 324 (1043)
-++.|++..|...|..+.
T Consensus 177 a~kagd~a~A~~~F~qia 194 (221)
T COG4649 177 AYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 555555555555554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.32 Score=45.75 Aligned_cols=101 Identities=15% Similarity=0.000 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001618 38 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 117 (1043)
Q Consensus 38 ~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 117 (1043)
+..+..+.+.-+..+.. .++..++.-+--..|..+..-+.-|.+++.+|+|.+|+.+|+.+....|..+
T Consensus 10 v~gLie~~~~al~~~~~-----------~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDP-----------DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHccCCh-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 33444445555555533 4888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 118 ~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.+--.++.|++..|+..= ..+-..++...++.
T Consensus 79 ~~kALlA~CL~~~~D~~W-r~~A~evle~~~d~ 110 (160)
T PF09613_consen 79 YAKALLALCLYALGDPSW-RRYADEVLESGADP 110 (160)
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHhcCCCh
Confidence 999999999999988652 22234455555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.1 Score=39.07 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001618 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 706 ~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~ 748 (1043)
..++.+|.++++.|++.+|..+.+.++++.|+|..+.--...|
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999998764444443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.89 E-value=5.3 Score=40.94 Aligned_cols=274 Identities=15% Similarity=0.121 Sum_probs=142.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhH
Q 001618 87 VGKGQLLLAKGEVEQASSAFKIVLEADRD--------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 158 (1043)
Q Consensus 87 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~l 158 (1043)
+.+++-....+++++|+..|.+++...-. ...+.+.++.+|...|++..--......-.. +...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~--------m~~f 78 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA--------MEDF 78 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH--------HHHh
Confidence 55666667777777777777777765211 1345566677777777666544333222111 1000
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 159 GLCRYKLGQLGKARQAFQRALQLDPE---NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 159 g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
-...-....+..++..|. +.+-...+......-. ..+-..+++.. .-..++.+++.
T Consensus 79 --------tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA----~rEkr~fLr~~---------Le~Kli~l~y~ 137 (421)
T COG5159 79 --------TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWA----DREKRKFLRLE---------LECKLIYLLYK 137 (421)
T ss_pred --------cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH----HHHHHHHHHHH---------HHHHHHHHHHh
Confidence 001112233333333333 3222222221111100 11112222222 33457888999
Q ss_pred cCCHHHHHHHHHHHHhh---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CCCChhhH--HHHHHHHH
Q 001618 236 TGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIFPY--YGLGQVQL 308 (1043)
Q Consensus 236 ~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~--~~la~~~~ 308 (1043)
.|.|.+|+.+.+.++.. .+..+.....+..-..+|+...+..++...+..+...... -|....+. +.-|...+
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhc 217 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHC 217 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceee
Confidence 99999999998887743 3444566677788888899998888888877766542211 11111221 22344556
Q ss_pred HcCCHHHHHHHHHHHHHHCC---CcHHHHHHHH---HHHHHcCCHHHHHHHHH--HHHH-hCCCCHHHHHHHHHHH---h
Q 001618 309 KLGDFRSALTNFEKVLEIYP---DNCETLKALG---HIYVQLGQIEKAQELLR--KAAK-IDPRDAQAFIDLGELL---I 376 (1043)
Q Consensus 309 ~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la---~~~~~~g~~~~A~~~~~--~~l~-~~p~~~~~~~~la~~~---~ 376 (1043)
...+|.-|..+|-.+++-.. .+..+...+- ..-...+..++...++. ..++ .+.....+....+..+ .
T Consensus 218 dd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRs 297 (421)
T COG5159 218 DDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRS 297 (421)
T ss_pred ccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCc
Confidence 67789999999988887542 2333332222 22222344444433332 2222 2344566777777777 2
Q ss_pred cCCHHHHHHHHHH
Q 001618 377 SSDTGAALDAFKT 389 (1043)
Q Consensus 377 ~~~~~~A~~~~~~ 389 (1043)
..++..|+..|..
T Consensus 298 L~df~~aL~qY~~ 310 (421)
T COG5159 298 LKDFSDALAQYSD 310 (421)
T ss_pred HhhHHHHHHHhhH
Confidence 3456666665543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=8.8 Score=43.37 Aligned_cols=254 Identities=17% Similarity=0.126 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 206 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285 (1043)
Q Consensus 206 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 285 (1043)
....+.+.......|+++......+..+...|+.+.|+..++..+. ..........++.+|.++..+.+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445556666677888888888888888888887777777777664 111122334567778888888888888888887
Q ss_pred HHHhcCCCCCChhh-HHH-HHHHHHH--------cCCHHHHHHHHHHH---HHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001618 286 SVKEINKPHEFIFP-YYG-LGQVQLK--------LGDFRSALTNFEKV---LEIYPDNCETLKALGHIYVQLGQIEKAQE 352 (1043)
Q Consensus 286 a~~~~~~~~~~~~~-~~~-la~~~~~--------~g~~~~A~~~~~~~---l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 352 (1043)
..+. .+...+ |.. .|.++.. .|+-+.|-.+++.. +...|.+..+-... ..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~---------~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI---------VRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH---------HHHHHH
Confidence 7752 222222 222 2233321 23444443333322 22222221110000 011111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHHcCCHHHHHHH
Q 001618 353 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQS 425 (1043)
Q Consensus 353 ~~~~~l~~~p~~~~--~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~ 425 (1043)
+-.+.- .++..+. .++.++.++ ......+..+ +. +....+... ..+ .-.+..+|.++...|+...|..+
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k-~~-~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELEK-MR-AELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHHH-HH-HHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111110 1111111 234444444 1222222221 11 111122222 222 23445679999999999999999
Q ss_pred HHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCC-hHHHHHHHH
Q 001618 426 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVLYR 504 (1043)
Q Consensus 426 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 504 (1043)
|...++... .......-.|.++|.+|.++...+. ..++..++.
T Consensus 472 f~i~~~~e~------------------------------------~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~ 515 (546)
T KOG3783|consen 472 FKIQVEKES------------------------------------KRTEDLWAVPFALYELALLYWDLGGGLKEARALLL 515 (546)
T ss_pred HHHHHHHHH------------------------------------hhccccccccHHHHHHHHHHHhcccChHHHHHHHH
Confidence 998875310 0001334567899999999999988 899999999
Q ss_pred HHHHhCcCc
Q 001618 505 LILFKYQDY 513 (1043)
Q Consensus 505 ~~l~~~p~~ 513 (1043)
++-.-..++
T Consensus 516 kAr~~~~dY 524 (546)
T KOG3783|consen 516 KAREYASDY 524 (546)
T ss_pred HHHhhcccc
Confidence 988766544
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.26 Score=41.91 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hhHHHHhHHHHHHHcC
Q 001618 103 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~-~~~~~~~lg~~~~~~g 166 (1043)
+..++..+..+|++..+.+.+|..++..|++++|+..+-.++..+|.. ....+-.+-.++..+|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 344555555566666666666666666666666666666555555443 2233333334443333
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.13 Score=38.39 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=27.3
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001618 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 194 (1043)
Q Consensus 154 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 194 (1043)
.++.+|..++++|+|..|+.+.+.+|++.|+|..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667777777777777777777777777777766554443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.3 Score=49.47 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=48.0
Q ss_pred chhHHHhHHHHHHHccCHHHHHHHHHHHHHHh-------cCCC----CHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCC
Q 001618 668 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-------YYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736 (1043)
Q Consensus 668 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~----~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P 736 (1043)
.+.++..+||+|..+|+......++++|+..| ..+. ...+++.+|...++.|++++|+++|.+++...-
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35677778888888887555444444444433 2211 167888899999999999999999998877643
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.71 E-value=6.8 Score=41.36 Aligned_cols=169 Identities=11% Similarity=0.063 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHH----hC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCc--h
Q 001618 191 ALAVMDLQANEAAGIRKGMEKMQRAFE----IY--PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTK--S 260 (1043)
Q Consensus 191 ~la~~~~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~--~ 260 (1043)
.|..+|...++ |.+|+......+. ++ +.-..+...-...|+...+..+|...+..+....+. .|.. +
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 34455555555 6666665544433 22 122344444555666666666666555555433221 1111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhh---HHHHHHHHHHcCCHHHHHHHH--HHHHHHCCCcHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETLK 335 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~ 335 (1043)
..-..-|..+....+|..|..+|-++.+.+........+ +-.+-.+-+..+..++.-.++ ..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 122233455555567777777777776644332222222 222233334455555433333 334444444566666
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 001618 336 ALGHIYVQL--GQIEKAQELLRKAAKIDP 362 (1043)
Q Consensus 336 ~la~~~~~~--g~~~~A~~~~~~~l~~~p 362 (1043)
..+.++.+. .+|..|+..|..-+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 666665543 356666666666554443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.5 Score=42.48 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001618 116 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191 (1043)
Q Consensus 116 ~~~a~~~la~~~~~~g---~~~~Al~~~~~~l~-~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 191 (1043)
.....+.+|.++.... +..+.+.+++.++. ..|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3566777788877654 46678888888886 5677666777888999999999999999999999999988877554
Q ss_pred HHH
Q 001618 192 LAV 194 (1043)
Q Consensus 192 la~ 194 (1043)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 333
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.45 E-value=3.6 Score=45.11 Aligned_cols=199 Identities=14% Similarity=0.019 Sum_probs=134.1
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHH
Q 001618 537 VNEALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 615 (1043)
Q Consensus 537 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A 615 (1043)
++.++..++. +.+....-|..-+-.|+..++.+.+..+....-+.....++.|.....+.. .+..+|
T Consensus 100 lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~A 167 (421)
T PRK12798 100 LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATA 167 (421)
T ss_pred HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHH
Confidence 4444445543 445555666667778999999999887765554445555555544423333 789999
Q ss_pred HHHHHHHHccCcccHH---HHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHH
Q 001618 616 KELYTRVIVQHTSNLY---AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 692 (1043)
Q Consensus 616 ~~~~~~~l~~~P~~~~---a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 692 (1043)
+.+|+.+--.-|.... ++-.-..+....|+.+++..+-.+.+..+..|++..+..-.|-.+.+-+. .+. -...+
T Consensus 168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~-d~~--~~~~l 244 (421)
T PRK12798 168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD-DEI--RDARL 244 (421)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc-ccc--cHHHH
Confidence 9999999888898442 33444555678999999999999999999877776544444444433332 222 22336
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 001618 693 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751 (1043)
Q Consensus 693 ~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~nla~~~~~ 751 (1043)
..++..+.......+|..+++.-.-.|+..-|.-.-.+++.+... ...-...+.+|+.
T Consensus 245 ~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~a 302 (421)
T PRK12798 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRG 302 (421)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHH
Confidence 667776543444789999999999999999999999999999743 3333455565643
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.35 E-value=8.2 Score=40.77 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=156.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIVLEA--DRDN--------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~ 155 (1043)
.+..+.......++++++..|..++.. .|.+ ..+.+.++.++...|++.+-..+....-. ++
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp--------f~ 78 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRP--------FL 78 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH--------HH
Confidence 355666666777788888888888763 2222 24567777778888877765555544321 11
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLD---PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 232 (1043)
..++. ..|....+..+... |++...-..+..-...- .-.+-..++++. .-..++.+
T Consensus 79 ~~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeW----A~~ekRtFLRq~---------Learli~L 137 (411)
T KOG1463|consen 79 SSVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEW----AKREKRTFLRQS---------LEARLIRL 137 (411)
T ss_pred HHhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHH----HHHHhHHHHHHH---------HHHHHHHH
Confidence 11111 12222222222222 22221111111100000 011222233333 23467889
Q ss_pred HHhcCCHHHHHHHHHHHHhh---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CCCC-hhhHHHHHH
Q 001618 233 FFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEF-IFPYYGLGQ 305 (1043)
Q Consensus 233 ~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~-~~~~~~la~ 305 (1043)
|+..++|.+|+.+...++.. .+..+...+.+..-..+|+...+..+|...+..+....+. +|.. ...-+.-|.
T Consensus 138 y~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGI 217 (411)
T KOG1463|consen 138 YNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGI 217 (411)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccc
Confidence 99999999999998888753 3334455667777888999999999999888877653211 1111 111223355
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCC---CcH---HHHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH--
Q 001618 306 VQLKLGDFRSALTNFEKVLEIYP---DNC---ETLKALGHIYVQLGQIEKAQELL--RKAAKIDPRDAQAFIDLGELL-- 375 (1043)
Q Consensus 306 ~~~~~g~~~~A~~~~~~~l~~~p---~~~---~~~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~~la~~~-- 375 (1043)
++....+|..|..+|-.+++-+. +.+ ..+..+..+-...+..++.-.++ +.+++....+..+...++..+
T Consensus 218 lha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~n 297 (411)
T KOG1463|consen 218 LHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGN 297 (411)
T ss_pred eeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcC
Confidence 55666899999999988887532 122 33444445555566666655444 345566677788888888888
Q ss_pred -hcCCHHHHHHHHHHH
Q 001618 376 -ISSDTGAALDAFKTA 390 (1043)
Q Consensus 376 -~~~~~~~A~~~~~~a 390 (1043)
...++..|+.-|..-
T Consensus 298 RSLkdF~~AL~~yk~e 313 (411)
T KOG1463|consen 298 RSLKDFEKALADYKKE 313 (411)
T ss_pred CcHHHHHHHHHHhHHH
Confidence 234566666665543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.41 Score=40.76 Aligned_cols=67 Identities=18% Similarity=0.062 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChH
Q 001618 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYS 134 (1043)
Q Consensus 68 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~ 134 (1043)
.+..+...+..+|.+..+.+.+|..++..|+++.|+..|-.++..++.. ..+...+-.++-..|.-.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4667788899999999999999999999999999999999999998765 444444444554555433
|
|
| >PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.001 Score=49.97 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-----hccCch
Q 001618 860 KLEDEQKRLRQQEEHFQRVKEQW-----RSSTPA 888 (1043)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~e~w-----~~~~~~ 888 (1043)
++.++.++|+.++++..+||||| ||+|+|
T Consensus 26 kkkRk~rlPK~~dp~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPGKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhcccCCCCCCCCCCCCCCccccCchhhhcccCC
Confidence 34555669999999999999999 888875
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.18 E-value=8.1 Score=40.40 Aligned_cols=118 Identities=15% Similarity=0.022 Sum_probs=74.5
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Q 001618 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235 (1043)
Q Consensus 156 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 235 (1043)
+.+....|+..+...-+..-..+++++|.+..+++.|+.-.... ..+|..+|+++++....... .......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~yr----~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIYR----QSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHHh----hHHHHhh
Confidence 45666777888888888888899999999999999888654444 67788888888765422111 1111111
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001618 236 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 290 (1043)
Q Consensus 236 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 290 (1043)
.|...+|. .+. ........-..++.+..++|+..+|++.++...+.+
T Consensus 259 ~~~~~da~------~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~ 305 (556)
T KOG3807|consen 259 QSPQHEAQ------LRR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF 305 (556)
T ss_pred hccchhhh------hhc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 11111111 100 011122345567888889999999999998887643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.1 Score=35.62 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKI 108 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~ 108 (1043)
|..+|.+|...|+|++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.41 Score=50.14 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=42.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
+-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|+..++..+...|++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 44556666777777777777777777777666667777777777777777777777766666
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.5 Score=40.54 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~ 164 (1043)
.++......+..++++++..++..+--..|+.+..-..-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHh
Confidence 344445555568888888888888888889888888888999999999999999998887777666 5566778888888
Q ss_pred cCCHH
Q 001618 165 LGQLG 169 (1043)
Q Consensus 165 ~g~~~ 169 (1043)
+|+..
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 87753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.9 Score=37.84 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=67.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHhcCCCCC-------CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCC----CC-
Q 001618 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN----TD- 704 (1043)
Q Consensus 637 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~- 704 (1043)
|.-....|.|.+|...+.++.+....-+.. -+.-++..|+..+..+|+|++++..-..++..|... .+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 444455677888888888877764211100 034466677888999999999999999999988532 22
Q ss_pred HH----HHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 705 AQ----ILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 705 ~~----~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
.. +.+.-+.++-..|+.++|++.|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 3456678888899999999999988654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=14 Score=42.33 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=15.6
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHH
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRL 505 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 505 (1043)
...+++..|+.+....++++|.+.|.+
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHH
Confidence 344555666666666666666655544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=6.2 Score=37.43 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHHHHHH
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRY 163 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg~~~~ 163 (1043)
-+.-+.+.|..++|+..|..+-+..-.+ ..+.+..|.+....|+...|+..|..+-.-.|.. ....++.-+.++.
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3444455566666666666665544332 3344556666666677777777776665544322 1234455555556
Q ss_pred HcCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001618 164 KLGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 164 ~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 217 (1043)
..|-|+.-..-.+-.- ..+|-...+.-.||....+.|+ +..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 6666655444333221 1122233444455555555555 5555555554443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.63 Score=48.79 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001618 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 300 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
..++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999988766554443
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.091 Score=53.57 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHH
Q 001618 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159 (1043)
Q Consensus 88 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg 159 (1043)
..+.-....|+.++|..+|+.++...|.++.++...|...-..++.-+|-.+|-+++.++|.+ ..++.+.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n-seALvnR~ 191 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN-SEALVNRA 191 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc-hHHHhhhh
Confidence 344555677888888888888888888888888888888887888888888888888888887 33344333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.49 E-value=21 Score=42.54 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=96.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 001618 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 308 (1043)
Q Consensus 229 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~ 308 (1043)
-..+++....|.-|+.+...--. ............|..++..|++++|...|-+.+..+. |.. ...-+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~------Vi~kfL 408 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSE------VIKKFL 408 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHH------HHHHhc
Confidence 34556666677777766654321 1122345677788999999999999999988885321 111 112223
Q ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHH
Q 001618 309 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 388 (1043)
Q Consensus 309 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~ 388 (1043)
......+-..+++.+.+..-.+.+--..|-.+|.++++.++-.++..+.- ...-..+.-..+-.++..+-.++|.-+
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~L-- 485 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELL-- 485 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHH--
Confidence 44445555566666666655566666778889999999877655544321 000000111111111233333333222
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 389 TARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 428 (1043)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 428 (1043)
....+. .. ..+-.++...++|++|+.++..
T Consensus 486 -----A~k~~~--he---~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 -----ATKFKK--HE---WVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred -----HHHhcc--CH---HHHHHHHHHhcCHHHHHHHHhc
Confidence 111111 11 1234556778999999999865
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.24 Score=50.70 Aligned_cols=65 Identities=31% Similarity=0.321 Sum_probs=41.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 229 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 229 (1043)
....|+.++|...|+.++.++|.+++++..+|.+....++ +-+|-.+|-+++.++|.+..++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCCchHHHhhh
Confidence 4455666666666666666666666666666666555555 6666666666666666666555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.52 Score=46.21 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288 (1043)
Q Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 288 (1043)
.++..+|.+|...|+.+.|++.|.++...........+.++.+.++.+..+++.....++.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45556666666666666666666666654444344455666666666666666666666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.17 E-value=2 Score=43.61 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHH
Q 001618 378 SDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 455 (1043)
Q Consensus 378 ~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (1043)
..++.|+..|.-++-.....+... ...++..++++|...|+.+....++++|+....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~--------------------- 149 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYE--------------------- 149 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH---------------------
Confidence 345566666655554433222222 256777889999999987777777766665311
Q ss_pred HhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhC
Q 001618 456 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 510 (1043)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 510 (1043)
..+.. .......-+...+++.+|.+..+.|++++|..+|.+++...
T Consensus 150 --------~a~~~-e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 150 --------EAYEN-EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred --------HHHHh-CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 00000 00000122456788899999999999999999999988743
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.1 Score=41.51 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001618 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 134 (1043)
Q Consensus 65 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 134 (1043)
+.++..++..+--..|+.+..-..-|.++...|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+..
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 3488888888878889999999999999999999999999999999988888988899999999988854
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=93.06 E-value=13 Score=39.03 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=69.7
Q ss_pred CCchhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHH--HHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHH
Q 001618 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 553 (1043)
Q Consensus 476 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (1043)
...++.++..+|..|.+.|++.+|..+|-.. ++...... +..... ..-.|.....+..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~---------------~~~~~~e~dlfi~ 145 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWS---------------TKGYPSEADLFIA 145 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHH---------------HHTSS--HHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHH---------------HhcCCcchhHHHH
Confidence 3467899999999999999998888776432 22222111 111122 2233444455444
Q ss_pred HHH-HhhhccchHHHHHHHHHhhhc----CCC--------CChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHH
Q 001618 554 LGD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 620 (1043)
Q Consensus 554 l~~-~~~~~g~~~~A~~~~~~~l~~----~~~--------~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 620 (1043)
.+. .|+..++...|...+...++. +|. +..+.+++.... ......... ...+..-.+.|.
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~ 218 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYK 218 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhC
Confidence 444 356678888888777666554 221 122333333333 222211111 134555555666
Q ss_pred HHHccCcccHHHHHHhHHHHHh
Q 001618 621 RVIVQHTSNLYAANGAGVVLAE 642 (1043)
Q Consensus 621 ~~l~~~P~~~~a~~~la~~~~~ 642 (1043)
..|+.+|.-...+..+|.+|..
T Consensus 219 ~~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 219 PSLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp H---HHHHTHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHHHHHCC
Confidence 6666667666677777777764
|
; PDB: 3LKU_E 2WPV_G. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.92 Score=44.51 Aligned_cols=103 Identities=10% Similarity=0.180 Sum_probs=82.5
Q ss_pred HHHHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HH
Q 001618 631 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 706 (1043)
Q Consensus 631 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 706 (1043)
.++..+|..|.+.|+++.|+..|.++++...++. ...++++++..+.+..|++.....+..++-.......+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678899999999999999999999988764322 35688899999999999999999999998877655444 33
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHhC
Q 001618 707 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 735 (1043)
Q Consensus 707 ~l~~la~~~~~~g~~~~A~~~~~ka~~~~ 735 (1043)
+-.+-|..++..++|..|...|-.+..-.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 44566778888999999988887665444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.21 Score=32.29 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADR 114 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 114 (1043)
+++.+|.++...|+++.|+..|..++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555555555555555555555555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=10 Score=43.36 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 340 (1043)
+.+..++..+.....+.-|.++|.++-. .-.+.+++...+++.+|..+.++.-+.- +.+++-.|+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD-----------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqw 813 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD-----------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQW 813 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc-----------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHH
Confidence 4444455555555555555555555432 2233445555566666655544432221 2344444454
Q ss_pred HHHcCCHHHHHHHHHHH
Q 001618 341 YVQLGQIEKAQELLRKA 357 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~ 357 (1043)
+....++++|.+.|.++
T Consensus 814 LAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhhhHHHHHHHHHHh
Confidence 55555555555555444
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.25 Score=31.97 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+++++|.++..+|++..|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555555555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=7.9 Score=43.91 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHHHh------------CcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc----------------
Q 001618 493 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 544 (1043)
Q Consensus 493 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 544 (1043)
...|++|...|.-+... +|-+++.++.++.++..+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34456666666655543 45568899999999999999988888877765421
Q ss_pred -----CCChH---HHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHH
Q 001618 545 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 616 (1043)
Q Consensus 545 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 616 (1043)
|.+-. +++.....+.+.|=|..|.++.+-++++.|..|+++...+.++ |...+ .+|.=-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2223333445678899999999999999999899888888877 54432 5566666
Q ss_pred HHHHHH-----HccCcccHHHHHHhHHHHHhcCC---chHHHHHHHHHHHHhc
Q 001618 617 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 617 ~~~~~~-----l~~~P~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 661 (1043)
++++.. +..-|+-.+. ..+|..|.+... -..|+..+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666554 3334554332 355666666554 5778889999988776
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=18 Score=38.02 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=50.2
Q ss_pred HHHhHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcC---CCCHHHHH
Q 001618 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY---NTDAQILL 709 (1043)
Q Consensus 633 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~l~ 709 (1043)
-..|+.|-.+.|+..+|+..|+......|-. ....++.||...++...-|...... +.++.+ |..+.+-+
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~---t~lniheNLiEalLE~QAYADvqav----LakYDdislPkSA~icY 350 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLL---TMLNIHENLLEALLELQAYADVQAV----LAKYDDISLPKSAAICY 350 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHhhccccCcchHHHHH
Confidence 3455666666677777777776666554411 2334455555555544433333222 333211 11122222
Q ss_pred HHHHH-------------HHhhhc---HHHHHHHHHHHHHhCCCCcchh
Q 001618 710 YLART-------------HYEAEQ---WQDCKKSLLRAIHLAPSNYTLR 742 (1043)
Q Consensus 710 ~la~~-------------~~~~g~---~~~A~~~~~ka~~~~P~~~~~~ 742 (1043)
..+.. -.+.|- -..|++...++++.+|.-|...
T Consensus 351 TaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 351 TAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHH
Confidence 11111 111111 1238888999999999776553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=91.92 E-value=8.4 Score=34.01 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-----------hhHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 001618 124 ACVEFNRGRYSDSLEFYKRALQVHPSC-----------PGAIRLGIGLCRYKLGQLGKARQAFQRAL 179 (1043)
Q Consensus 124 a~~~~~~g~~~~Al~~~~~~l~~~p~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 179 (1043)
|.-.+.-|-|.+|..-+.++.....+. ...++..++..+..+|+|++++..-.++|
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444556678888888888887764322 23456667777777888777766544443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.3 Score=38.27 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=47.7
Q ss_pred HhcCCchHHHHHHHHHHHHhcCCCCCC----chhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCH
Q 001618 641 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 705 (1043)
Q Consensus 641 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 705 (1043)
...|++..|++.+.+..+....+.... ...+.+++|.++...|++++|+..++.++.......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 467888888888888887765432211 24567788888888899999999998888887666663
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.61 Score=47.99 Aligned_cols=89 Identities=10% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHh-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001618 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 106 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
|.+.....|+++..|...+.-..+.|-|.+--.+|.+++..+|.+ ..+|.. .+.-+...++++.++..|.+++..+|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 344445567788888888777777888888888888888888888 566665 555667778888888888888888888
Q ss_pred cHHHHHHHHHH
Q 001618 185 NVEALVALAVM 195 (1043)
Q Consensus 185 ~~~a~~~la~~ 195 (1043)
++..|...-.+
T Consensus 175 ~p~iw~eyfr~ 185 (435)
T COG5191 175 SPRIWIEYFRM 185 (435)
T ss_pred CchHHHHHHHH
Confidence 88777655443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=43 Score=40.42 Aligned_cols=124 Identities=8% Similarity=-0.044 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-Hh
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL-LI 376 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~ 376 (1043)
.++..-....+.+.|...+........-+. .+...++.-....+...+|...+..+.....+. ..+-....+ +.
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~-~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST-SLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc-HHHHHHHHHHHH
Confidence 344445566777888888887655443222 233444444444333567777777654332222 222222223 27
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001618 377 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 377 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
.++++.....+..+-... .......+-+|..+...|+.++|..+|+++..
T Consensus 325 ~~dw~~~~~~i~~L~~~~-----~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEA-----KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ccCHHHHHHHHHhcCHhh-----ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 788887766665532211 12467888899998899999999999999855
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.36 Score=49.59 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=72.2
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 72 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
|.++....|+++..|...+......|.|.+--..|.++++.+|.|+..|.. -+.-+.-.+++..+..+|.++++.+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 334445568899999999988889999999999999999999999999977 5666778899999999999999999999
Q ss_pred hhHHHH
Q 001618 151 PGAIRL 156 (1043)
Q Consensus 151 ~~~~~~ 156 (1043)
+.+|+
T Consensus 176 -p~iw~ 180 (435)
T COG5191 176 -PRIWI 180 (435)
T ss_pred -chHHH
Confidence 45454
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.86 E-value=8.8 Score=43.78 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=52.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHH-HH
Q 001618 103 SSAFKIVLEADRDNVPALLGQ--ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-AL 179 (1043)
Q Consensus 103 ~~~~~~~l~~~p~~~~a~~~l--a~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al 179 (1043)
+..+...+..+|.++..++.. ...+...+....+.-.+..++..+|.+ ..++..++......|....+...+.. +.
T Consensus 51 ~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 51 IYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333333444444433222 333344444545555555555555554 23344444444444444444433333 44
Q ss_pred hhCCCcHHHHHHH------HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001618 180 QLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227 (1043)
Q Consensus 180 ~~~p~~~~a~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 227 (1043)
...|.+......+ +.+....+. ..++...+.+++...|.++.+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHh
Confidence 4455544443333 333333333 44444444455555555544333
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.39 E-value=49 Score=39.99 Aligned_cols=73 Identities=8% Similarity=-0.005 Sum_probs=46.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001618 71 YYNKASRIDMHEPSTWVGKGQLLL---AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 147 (1043)
Q Consensus 71 ~~~~a~~~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~ 147 (1043)
-+...+..+|+.|..-........ ..+++..-+.+ ....|.+.......+......|+-.+|......+....
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 344456667877766555544333 34455544442 22347777777777888888999888877777766554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.7 Score=51.09 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChhHHHHhHHH
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~ 160 (1043)
......|.-.+..+....|+..|.+++...|.....+...|.++++. |+.-.|+.....+++++|.. ..+++.++.
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~ 453 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLAR 453 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHH
Confidence 33344444445555677788888888888888888887777777765 45556777777777888777 566788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc
Q 001618 161 CRYKLGQLGKARQAFQRALQLDPEN 185 (1043)
Q Consensus 161 ~~~~~g~~~~A~~~~~~al~~~p~~ 185 (1043)
++..++++.+|+.+...+....|.+
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchh
Confidence 8888888888888777776666643
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.32 E-value=6.8 Score=44.64 Aligned_cols=127 Identities=23% Similarity=0.163 Sum_probs=98.7
Q ss_pred HHHHHHHHhhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 001618 68 ATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-AL 144 (1043)
Q Consensus 68 A~~~~~~a~~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-~l 144 (1043)
++..+...+.++|.++..++.. ...+...+....+.-.+...+..+|.++.+...++......|..-.++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5666666667888888775554 66666778888999999999999999999999999988888777766666655 77
Q ss_pred HhCCCChhHHH------HhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001618 145 QVHPSCPGAIR------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 145 ~~~p~~~~~~~------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
...|.+ ..+. +.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777887 3322 3358888888999999999999999999987665555544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.41 Score=47.16 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=32.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001618 127 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185 (1043)
Q Consensus 127 ~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 185 (1043)
....++.+.|.++|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344455555555555555555555 4445555555555555555555555555555543
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.78 E-value=41 Score=38.23 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=84.5
Q ss_pred HHHHHcCCHHHHHHHHHhcCCc-ch--hhhhhc-cHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHHHHHHHHHHHhhc
Q 001618 3 REYFKQGKVEQFRQILEEGSSP-EI--DEYYAD-VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 78 (1043)
Q Consensus 3 ~~y~~~g~~~~a~~~l~~~~~~-~~--~~~~~~-~~~~~~~~l~~La~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 78 (1043)
..||..|.|++|+...-++-.. .+ ..+|.. --+.++.++..+..-...-|....-.. . -.-+++.+...
T Consensus 67 KvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y~~~~~d~iD~----~---l~~v~e~i~~k 139 (926)
T COG5116 67 KVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAYIGGDKDIIDR----I---LDFVLEVIGAK 139 (926)
T ss_pred HHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhhhCCCcccchH----H---HHHHHHHHHHH
Confidence 6899999999999987665431 11 112222 122333333333222222222110001 1 11122222222
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHH
Q 001618 79 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156 (1043)
Q Consensus 79 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~ 156 (1043)
.-.+...-+.+|.... |. -+..++.++....+. ...++.++........+. -+++...+...|..+.--++
T Consensus 140 c~~~se~~~~lgIa~e--g~---rldiie~~l~~~~d~di~~ylL~Lait~v~~~~fr--~~ilr~l~~~~~~~~~pdyf 212 (926)
T COG5116 140 CVDDSEIGYLLGIAAE--GL---RLDIIEKYLSDGNDCDIINYLLDLAITLVEEEGFR--KEILRMLAEIGPGKPKPDYF 212 (926)
T ss_pred HhhHHHHHHHHHHHHH--HH---HHHHHHHHHhCCCcccHHHHHHHHHHHHhhhHHHH--HHHHHHHHHhcCCCCCCcEE
Confidence 2223333333443321 11 133444555443222 234455555544433333 24566667777766444578
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 157 GIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 157 ~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
.++.|+..+++...|...+.+..+.+.
T Consensus 213 ~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 213 YVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred EEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 899999999999999999999877543
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.06 E-value=53 Score=38.56 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=12.3
Q ss_pred HHhHHHHHhcCCchHHHHHHHHHHHHhc
Q 001618 634 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 661 (1043)
Q Consensus 634 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 661 (1043)
+++..++..-|.|.+ |.++....|
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHhcCH
Confidence 344445555555543 555555544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.76 Score=45.36 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=50.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 92 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 92 ~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
.....|+.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44567888888888888888888888888888888888888888888888888888887
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.18 Score=58.62 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHcCCHHHHH
Q 001618 153 AIRLGIGLCRYKLGQLGKAR 172 (1043)
Q Consensus 153 ~~~~~lg~~~~~~g~~~~A~ 172 (1043)
...+++..|++..|-...+.
T Consensus 407 ~~~~g~s~cly~~~~~q~~m 426 (1516)
T KOG1832|consen 407 ETFYGLSSCLYTIGSLQGIM 426 (1516)
T ss_pred hhhhhHHHHHHHHhhhhhHH
Confidence 44566666666666555444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.84 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=22.4
Q ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHHh
Q 001618 670 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 699 (1043)
Q Consensus 670 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 699 (1043)
.++.++|.+|..+|++.+|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 466788888888888888888888887764
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.72 E-value=2.6 Score=34.21 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=45.7
Q ss_pred HhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhhcHHHHHHHHHH
Q 001618 673 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 730 (1043)
Q Consensus 673 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~k 730 (1043)
..-|.-++.+.+..+|+..+.+++++.+.+++ ..++-+|..+|...|++.+.+.+.-.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888999999999999999776665 67777888999999999997776533
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.65 E-value=10 Score=44.35 Aligned_cols=41 Identities=29% Similarity=0.411 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001618 811 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQK 852 (1043)
Q Consensus 811 l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (1043)
++.++..+...+++|++ ..|.++.+..++++++++++++.+
T Consensus 216 v~~~qe~La~~qe~eE~-qkreeEE~~r~eeEEer~~ee~E~ 256 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEER-QKREEEERLRREEEEERRREEEEA 256 (1064)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544433322 233333333344444444444443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.64 E-value=4.4 Score=32.95 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=41.7
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001618 155 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216 (1043)
Q Consensus 155 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 216 (1043)
.+.-|.-++...+..+|+..|.++++..++...-+..||.+.....+.|.+.+.+.+...-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677778888888888888877777777777766555555444777666554433
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.42 E-value=44 Score=36.76 Aligned_cols=262 Identities=13% Similarity=0.017 Sum_probs=132.5
Q ss_pred HHHcCCHHHHHHHHHhcCCcchhhhhhccHHHHHHHHHHHHHHHHHcchhh---------------hhhhhHHHHHHHHH
Q 001618 5 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE---------------TKQREKEEHFILAT 69 (1043)
Q Consensus 5 y~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~---------------~~~~~r~~~~~~A~ 69 (1043)
...+|.+.++.-+.+.+.+..++- ++.-+. -+..|..+|-...-.. +...=++|...+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~v----S~kvq~-~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd-- 197 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDV----SEKVQL-ELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD-- 197 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCC----CHHHHH-HHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH--
Confidence 345677777777777765443211 111222 2444555554332211 011123343333
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHh-
Q 001618 70 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQA-CVEFNRGRYSDSLEFYKRALQV- 146 (1043)
Q Consensus 70 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~a~~~la-~~~~~~g~~~~Al~~~~~~l~~- 146 (1043)
+|- +.-|..+..+..+..-+.+--..+.|..+|+..-.... -...++.++. .+-+..| .++...++..
T Consensus 198 -L~~---E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqk 268 (625)
T KOG4422|consen 198 -LLF---ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQK 268 (625)
T ss_pred -HHH---hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhh
Confidence 333 34465555555444334444678889999987754332 2334444332 2223333 5666666655
Q ss_pred -CCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH--
Q 001618 147 -HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ------LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE-- 217 (1043)
Q Consensus 147 -~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~-- 217 (1043)
.|+. ..+..+-.|..+.|+++.|+..+.+++. .+|.-...++. .....+.++. ..-+...+..+..
T Consensus 269 m~Pnl--~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~i-ik~f~re~dp--~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 269 MTPNL--FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLI-IKNFKRESDP--QKVASSWINDIQNSL 343 (625)
T ss_pred cCCch--HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHH-HHHhcccCCc--hhhhHHHHHHHHHhh
Confidence 4665 6678899999999999999998887764 35654444333 3344444431 2234444443332
Q ss_pred -------hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCCc---hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 218 -------IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTK---SHSYYNLARSYHSKGDYEKAGLYYMA 285 (1043)
Q Consensus 218 -------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 285 (1043)
..|.+.........++....+..-|.++..-.-...+- .+.. ...+..+-.+.+.....+.-+..|..
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444444444445777777666665443321110 0111 11222333444455556666666665
Q ss_pred HH
Q 001618 286 SV 287 (1043)
Q Consensus 286 a~ 287 (1043)
++
T Consensus 424 lV 425 (625)
T KOG4422|consen 424 LV 425 (625)
T ss_pred hc
Confidence 55
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=88.01 E-value=10 Score=41.24 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001618 121 LGQACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 183 (1043)
Q Consensus 121 ~~la~~~~~~g~~~~Al~~~~~~l~~~--------p~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 183 (1043)
+.-|..++++++|..|..-|..+|.+. |.. ...+--.+..||..+++.+.|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 444566777777777777777777652 111 122344688899999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001618 184 ENVEALVALAVMDLQANEAAGIRKGMEK 211 (1043)
Q Consensus 184 ~~~~a~~~la~~~~~~~~~~~~~~A~~~ 211 (1043)
.+...++..|.++....+ |.+|-..
T Consensus 260 ~~frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred chhhHHHHHHHHHHHHHH---HHHHHHH
Confidence 988888888888887776 6665543
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.89 E-value=40 Score=37.00 Aligned_cols=163 Identities=9% Similarity=0.033 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001618 66 ILATQYYNKASRIDMHEPSTWVGKGQLLLA------------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 132 (1043)
Q Consensus 66 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~- 132 (1043)
..++.+=.+.+..+|....+|...-.++.. ..-++.-+.+...++..+|+...+|+.+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 467777778888899887777664333322 1235666777888899999999999999998887764
Q ss_pred -hHHHHHHHHHHHHhCCCChhHHHHh---HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh------hh-
Q 001618 133 -YSDSLEFYKRALQVHPSCPGAIRLG---IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 201 (1043)
Q Consensus 133 -~~~Al~~~~~~l~~~p~~~~~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 201 (1043)
+..=+.++.++++.+|.+.....+. .+..-.......+=+.+..+++..++.|..+|.....+.... |.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 5788899999999999873222222 122222222355667778888888888888888877766532 10
Q ss_pred --HHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001618 202 --AAGIRKGMEKMQRAFEIYPYCAMALNY 228 (1043)
Q Consensus 202 --~~~~~~A~~~~~~al~~~p~~~~~~~~ 228 (1043)
..-...-+.....++-.+|.+..+|++
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 122445556666677777777766665
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.57 E-value=48 Score=36.25 Aligned_cols=108 Identities=22% Similarity=0.235 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCCCChh
Q 001618 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTN---HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIF 298 (1043)
Q Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~ 298 (1043)
...|+.+...|-..|+......++...+.... .....+....++-+.|...+.|+.|-....+..- ....+.....
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 34566666667777776666666655554321 2233455567777888888888888777766541 0001123344
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q 001618 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330 (1043)
Q Consensus 299 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 330 (1043)
..+.+|.+..-.++|..|.++|-.++...|.+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 56677888888888888888888888888863
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=87.31 E-value=31 Score=36.10 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=62.7
Q ss_pred CchHHHHHHHHHHHHhcCCCCC-CchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhh
Q 001618 645 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAE 719 (1043)
Q Consensus 645 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g 719 (1043)
.....+.++.++.+.+...... -...+...+|..|+..|++++|+.+|+.+...|....- ..++..|..|....|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3344566666666665322111 13456678899999999999999999999888754443 677788889999999
Q ss_pred cHHHHHHHHHHHH
Q 001618 720 QWQDCKKSLLRAI 732 (1043)
Q Consensus 720 ~~~~A~~~~~ka~ 732 (1043)
+.+..+.+.-+++
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9888777655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=86.85 E-value=7.9 Score=33.34 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=45.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcch
Q 001618 373 ELLISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 433 (1043)
Q Consensus 373 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 433 (1043)
..+..+++..|++.+.+............ ....+.+++.++...|++++|+..+++++.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33467788888887777777665543322 24567788999999999999999999999853
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.80 E-value=5.5 Score=49.78 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=93.7
Q ss_pred hCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 001618 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE--- 289 (1043)
Q Consensus 218 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--- 289 (1043)
+.|.....+..|+.++...|++++|+.+..++.-. ....+.....+..++...+..++...|+..+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 45666666677777777777777777666655421 2234555666777777777777777777776666541
Q ss_pred --cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001618 290 --INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 290 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
.+..|.......+++.++...++++.|+.+++.+++.. | .....+..++.++...+++..|+...+....
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 13456666666777777777777888888777777642 2 2455667777888888888777777666554
Q ss_pred h
Q 001618 360 I 360 (1043)
Q Consensus 360 ~ 360 (1043)
+
T Consensus 1128 i 1128 (1236)
T KOG1839|consen 1128 I 1128 (1236)
T ss_pred H
Confidence 3
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.46 E-value=9.3 Score=44.53 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 001618 826 QQNRQRQEAARQAA 839 (1043)
Q Consensus 826 ~~~~~~~~~~~~~~ 839 (1043)
.++|+++|+.|+.+
T Consensus 357 kkererqEqErk~q 370 (1118)
T KOG1029|consen 357 KKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555566555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.5 Score=30.68 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 705 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 705 ~~~l~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
..++..||.+|...|++.+|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.18 E-value=17 Score=41.47 Aligned_cols=20 Identities=10% Similarity=0.203 Sum_probs=9.1
Q ss_pred HHHHHHHHHHcCChhHHHHH
Q 001618 517 YLRLAAIAKARNNLQLSIEL 536 (1043)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~ 536 (1043)
...++..+...|-++.|+.+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhh
Confidence 34444445555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.10 E-value=7.8 Score=48.52 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------C
Q 001618 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------Y 327 (1043)
Q Consensus 261 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~ 327 (1043)
.-....+......|.+.+|.+ ..+++..+. ..+....++..++.++...|++++|+..-.++.-+ .
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345556777777888888877 333333221 45777888999999999999999999988776543 2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC
Q 001618 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 398 (1043)
Q Consensus 328 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 398 (1043)
|+....+.+++......++...|+..+.++..+ .|.-.....++..++ ..+.++.|+.+++.+........
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 445677888888888889999999998888764 365666777888888 77899999999999998766543
Q ss_pred CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 001618 399 EE---VPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 432 (1043)
Q Consensus 399 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 432 (1043)
.+ .....+..++.++...+++..|+...+....+
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 32 22455666777777888888877777666553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.96 E-value=22 Score=40.55 Aligned_cols=159 Identities=17% Similarity=0.094 Sum_probs=88.1
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcC
Q 001618 89 KGQLLLAKGEVEQASSAFK--IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~--~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g 166 (1043)
.-...+.+|+++.+..... +++..-| ..-....+..+.++|.++.|+.+.. + +..++.+ ..++|
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeL---Al~lg 332 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFEL---ALQLG 332 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHH---HHhcC
Confidence 3455667888888887775 2222222 3345666677777888888776532 2 3445544 35778
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 001618 167 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 246 (1043)
Q Consensus 167 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (1043)
+++.|..... ..++...|..||...+..|+ ++-|..+|.++-. +..|..+|...|+.+...++.
T Consensus 333 ~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAK-----ELDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 8888876543 33467788888888888888 8888877776422 335556677777776666666
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001618 247 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285 (1043)
Q Consensus 247 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 285 (1043)
..+.... -+...-.+++..|++++.+.++..
T Consensus 397 ~~a~~~~--------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG--------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc--------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555332 122223344455666665555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=85.94 E-value=8.7 Score=41.73 Aligned_cols=105 Identities=12% Similarity=0.009 Sum_probs=74.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcchhhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCCCCCCchhHHHHhHHHH
Q 001618 410 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 489 (1043)
Q Consensus 410 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 489 (1043)
+..++++++|..|.--|..++++|.....++...... .-++......+.-.+..|
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~-------------------------~~di~~vaSfIetklv~C 237 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKAS-------------------------AEDISSVASFIETKLVTC 237 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-------------------------hhhHHHHHHHHHHHHHHh
Confidence 5667888889999888988888765332222110000 000111123345578899
Q ss_pred HHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 001618 490 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539 (1043)
Q Consensus 490 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (1043)
|..+++++.|+..-.+.+..+|.+..-+++.+.++..+.+|.+|...+--
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888665443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.70 E-value=2.7 Score=46.72 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001618 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 138 (1043)
Q Consensus 62 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~ 138 (1043)
...+..|+..|.+++...|.....+..++.+++++ |+.-.|+.-+..++..+|....+++.++.++...+.+.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 44567899999999999999999999999888886 566678888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001618 139 FYKRALQVHPSC 150 (1043)
Q Consensus 139 ~~~~~l~~~p~~ 150 (1043)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.61 E-value=4.3 Score=41.94 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=40.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001618 91 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 150 (1043)
Q Consensus 91 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~ 150 (1043)
..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...+...|+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 345556666667766666666666666666666666666676666766666666666666
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=84.92 E-value=55 Score=34.45 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=39.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh----CCC----------cHHHHHHH--HHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001618 158 IGLCRYKLGQLGKARQAFQRALQL----DPE----------NVEALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPY 221 (1043)
Q Consensus 158 lg~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~~~l--a~~~~~~~~~~~~~~A~~~~~~al~~~p~ 221 (1043)
....|..+++...|...+...++. +|+ ....+..+ -..-+..++...+..-...|...++.+|.
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~ 226 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPS 226 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHH
Confidence 334566778888888877766655 332 22222211 22222333333455555556666666677
Q ss_pred cHHHHHHHHHHHHhcC
Q 001618 222 CAMALNYLANHFFFTG 237 (1043)
Q Consensus 222 ~~~~~~~la~~~~~~g 237 (1043)
....+..+|..|+...
T Consensus 227 ~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 227 FKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp THHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCC
Confidence 7777777777777643
|
; PDB: 3LKU_E 2WPV_G. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.69 E-value=7.9 Score=38.16 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001618 363 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 423 (1043)
Q Consensus 363 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 423 (1043)
+++...+.||..|...+..+++.++-+++.+... +...+++++..++.++...|+++.|-
T Consensus 139 ~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3455566666666555666666666666665443 22455667777777777777766654
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=84.11 E-value=3.1 Score=28.27 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSA 105 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~ 105 (1043)
.|+.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.4 Score=27.28 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHccCHHHHHHHH
Q 001618 671 VWINLAHVYFAQGNFALAMKMY 692 (1043)
Q Consensus 671 ~~~~lg~~~~~~g~~~~A~~~~ 692 (1043)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4555566666666666665554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.00 E-value=8.2 Score=44.94 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 001618 830 QRQEAARQAALA 841 (1043)
Q Consensus 830 ~~~~~~~~~~~~ 841 (1043)
.|-|++|+.|+.
T Consensus 351 EreE~ekkerer 362 (1118)
T KOG1029|consen 351 EREEEEKKERER 362 (1118)
T ss_pred HHHHHHHHHHHH
Confidence 334445554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=83.75 E-value=4.5 Score=29.85 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=24.5
Q ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 001618 669 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 714 (1043)
Q Consensus 669 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~ 714 (1043)
...|..+-+.|.+.|++++|.++|+.+.+. .-.++..++..+-..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Confidence 345555666666666666666666666544 234444444444433
|
|
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.52 E-value=26 Score=38.39 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=19.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHh
Q 001618 709 LYLARTHYEAEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 709 ~~la~~~~~~g~~~~A~~~~~ka~~~ 734 (1043)
..-|.+.|+.|+.++|.++|+.+...
T Consensus 271 LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 271 LLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34577888888888888888877543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=83.50 E-value=1.6 Score=29.14 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=18.0
Q ss_pred cHHHHHHhHHHHHhcCCchHHHHHHHHH
Q 001618 629 NLYAANGAGVVLAEKGQFDVSKDLFTQV 656 (1043)
Q Consensus 629 ~~~a~~~la~~~~~~g~~~~A~~~~~~~ 656 (1043)
|...++.+...|++.|++++|..+|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4556666666666666666666666653
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.44 E-value=75 Score=34.82 Aligned_cols=135 Identities=13% Similarity=0.109 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHccCcc---------cHHHHHHhHHHHHhcCCchHHHHHHHHHHHHhcC-CCCCCchhHHHhHHHHH
Q 001618 610 THLEKAKELYTRVIVQHTS---------NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINLAHVY 679 (1043)
Q Consensus 610 ~~~~~A~~~~~~~l~~~P~---------~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~lg~~~ 679 (1043)
+.+.+|..+-...+..... ..-.|+.+..++...|+...-...+...+....= ............|-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 6778887776665543211 1223455566666777766666666665554311 11111223344456778
Q ss_pred HHccCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhhhcHHHHHHHHHHHHHhCCCCcchhhH
Q 001618 680 FAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744 (1043)
Q Consensus 680 ~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~ka~~~~P~~~~~~~n 744 (1043)
+..+.|+.|-..-.+..--...+++ +..++++|++..-.++|..|.++|-.|+...|++..+-|.
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~ 286 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR 286 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH
Confidence 8889999998885443311111222 6778999999999999999999999999999997665443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=83.29 E-value=3.7 Score=30.26 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHhhhcCCCCChHHHHHhhhH
Q 001618 548 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 592 (1043)
Q Consensus 548 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~ 592 (1043)
...|..+...+.+.|++++|.++|+++.+..-.++.+++..+...
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777788888888888888888877766677776655544
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.15 E-value=2.5 Score=29.07 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.5
Q ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHH
Q 001618 670 DVWINLAHVYFAQGNFALAMKMYQNCLRK 698 (1043)
Q Consensus 670 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 698 (1043)
+++..||.+-+..++|.+|+.-|++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999998876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.86 E-value=1.2e+02 Score=36.69 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-CCcHHHH----HHHHHH
Q 001618 267 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-Y-PDNCETL----KALGHI 340 (1043)
Q Consensus 267 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~-p~~~~~~----~~la~~ 340 (1043)
-.++...++|++|+.++..+ ..+.........|..++.. .+++-...+-+.... + +...... ..+-.+
T Consensus 497 ~ille~~~ny~eAl~yi~sl-----p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i 570 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYISSL-----PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQGKGKSLSNIPDSIEFI 570 (933)
T ss_pred HHHHHHhcCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCCCCchhhcCccchhhe
Confidence 34456667777777776543 1223333444555555433 333333333333322 1 1110000 112223
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 001618 341 YVQLGQIEKAQELLRKAAKIDPRDA 365 (1043)
Q Consensus 341 ~~~~g~~~~A~~~~~~~l~~~p~~~ 365 (1043)
+.-.+++..-..++....+..|+..
T Consensus 571 ~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 571 GIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred eeeccCHHHHHHHHHHHHhcCCCch
Confidence 3344566666666665666655543
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=82.44 E-value=4.3 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH--HHHHhCC
Q 001618 119 ALLGQACVEFNRGRYSDSLEFYK--RALQVHP 148 (1043)
Q Consensus 119 a~~~la~~~~~~g~~~~Al~~~~--~~l~~~p 148 (1043)
.++.+|..+..+|+|++|+.+|+ -+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44555555666666666666632 4444443
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=4.2 Score=52.20 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=18.1
Q ss_pred CchhhhhhhhHHHhcCCCC----CCCCCCCCCCch
Q 001618 962 DDDVEENANDRLAAAGLED----SDVDDEMAPSIT 992 (1043)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 992 (1043)
+++.-.+-+++|++-.|.- |-.-.++.|+++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1465)
T PLN03237 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293 (1465)
T ss_pred ccccHHHHHHHHHhccccCCCCcccccccccccch
Confidence 3444457788999988833 222233556655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.20 E-value=23 Score=37.32 Aligned_cols=64 Identities=22% Similarity=0.395 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001618 330 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 393 (1043)
Q Consensus 330 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 393 (1043)
...++..++..+...|+++.++..+++++..+|-+...|..+...| ..|+...|+..|.++...
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777777 777777777777777664
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.58 E-value=1e+02 Score=34.98 Aligned_cols=228 Identities=11% Similarity=0.028 Sum_probs=123.3
Q ss_pred hhHHHHhHHHHHHhcCChHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 558 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 558 (1043)
+-..+..+..++.......-...++.+++... .+--+++.++.+|... ..+.-..++++..+.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33444455555555555555667777777754 3467888899999887 567778888999998888888888888877
Q ss_pred hhccchHHHHHHHHHhhhcC-CCCChHHHHHhhhHHHHHHHhhcccChhHHhhhHHHHHHHHHHHHccCcc--cHHHHHH
Q 001618 559 LKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANG 635 (1043)
Q Consensus 559 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~~ 635 (1043)
.+ ++-..+..+|.+++... |.....+ +-.+ |....+... .+.+.-+....++-..... -..++..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~---i~ev-WeKL~~~i~-------dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAA---IKEV-WEKLPELIG-------DDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhh---HHHH-HHHHHHhcc-------ccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 66 88888999998887632 2111100 1111 111111000 2233333333333222221 1112222
Q ss_pred hHHHHHhcCCchHHHHHHHHHHHHhcCCCCCCchhHHHhHHHHHHHccCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 001618 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 715 (1043)
Q Consensus 636 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 715 (1043)
+-.-|....++++|+.++..+++... .+.++.-++...+. .++....+.+-+.....+-
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~-----k~~~ar~~~i~~lR----------------d~y~~~~~~e~yl~~s~i~ 269 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDE-----KDVWARKEIIENLR----------------DKYRGHSQLEEYLKISNIS 269 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcc-----hhhhHHHHHHHHHH----------------HHhccchhHHHHHHhcchh
Confidence 22334445566666666666666542 22222222222111 1122222223333333333
Q ss_pred HhhhcHHHHHHHHHHHHHhCCCCcch
Q 001618 716 YEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 716 ~~~g~~~~A~~~~~ka~~~~P~~~~~ 741 (1043)
..-.++.+|+.-|++.++.+.+|-..
T Consensus 270 ~~~rnf~~~l~dFek~m~f~eGnFVf 295 (711)
T COG1747 270 QSGRNFFEALNDFEKLMHFDEGNFVF 295 (711)
T ss_pred hccccHHHHHHHHHHHheeccCceEE
Confidence 33456778888899999998887544
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.26 E-value=95 Score=34.50 Aligned_cols=208 Identities=19% Similarity=0.095 Sum_probs=92.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhh-CCCc
Q 001618 107 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPEN 185 (1043)
Q Consensus 107 ~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 185 (1043)
..-+..+|.|..+.+.. .+.-|+..- ++.++..++.......+.-|..-+-.|+..+|...+..+--. -|..
T Consensus 74 ~~~vw~dprNv~Aa~iy---~lSGGnP~v----lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~ 146 (421)
T PRK12798 74 DPEVWDDPRNVDAALIY---LLSGGNPAT----LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAE 146 (421)
T ss_pred CHHHhCCccchhHHHhh---HhcCCCHHH----HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCch
Confidence 33344455555543322 123344432 333444444433444555666666777777777766553211 1122
Q ss_pred HHHHHHHHHHHHH-hhhHHhHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCchH
Q 001618 186 VEALVALAVMDLQ-ANEAAGIRKGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 261 (1043)
Q Consensus 186 ~~a~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 261 (1043)
.-.++.|...... ..+ ...|+..|..+--..|... .++..-..+....|+.+++..+....+.....++....
T Consensus 147 lg~~laLv~a~l~~~~d---P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~ 223 (421)
T PRK12798 147 LGAYLALVQGNLMVATD---PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ 223 (421)
T ss_pred hhhHHHHHHHHHhcccC---HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH
Confidence 2333333322222 222 6777777777766666543 23333333445555555555555555544444443333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001618 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 326 (1043)
Q Consensus 262 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 326 (1043)
.+-.++..+...++-. -...+..++..+ ..+.....|+.++..-.-.|+.+-|.-.-.+++.+
T Consensus 224 F~~~F~~~~~~~~d~~-~~~~l~~~ls~~-d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 224 FAQRFVDLVVRLDDEI-RDARLVEILSFM-DPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHhccccc-cHHHHHHHHHhc-CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 3333333333322111 111122223221 12222334444555555555555555555544444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.16 E-value=2.3 Score=26.39 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHH
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFK 107 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~ 107 (1043)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666655543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=81.07 E-value=1e+02 Score=34.85 Aligned_cols=94 Identities=15% Similarity=0.021 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChhHHHHhHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001618 117 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196 (1043)
Q Consensus 117 ~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 196 (1043)
-..+..+..++.......-...++.+++....+- ..++.++.||... ..++-...|++.++.+-+++..-..|+..|
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3334444444444444444455556666554433 3456666666665 344555566666666666665555555555
Q ss_pred HHhhhHHhHHHHHHHHHHHHH
Q 001618 197 LQANEAAGIRKGMEKMQRAFE 217 (1043)
Q Consensus 197 ~~~~~~~~~~~A~~~~~~al~ 217 (1043)
-. .+ ...+..+|.+++-
T Consensus 143 Ek-ik---~sk~a~~f~Ka~y 159 (711)
T COG1747 143 EK-IK---KSKAAEFFGKALY 159 (711)
T ss_pred HH-hc---hhhHHHHHHHHHH
Confidence 44 33 4555555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.81 E-value=11 Score=39.71 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=60.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001618 295 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360 (1043)
Q Consensus 295 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 360 (1043)
....++..++..+...|+++.++..++..+..+|.+-..|..+...|...|+...|+..|+++-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 344678889999999999999999999999999999999999999999999999999999987653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.50 E-value=34 Score=33.85 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hhHHHHhHHHHHHHcCCHHHH
Q 001618 117 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYKLGQLGKA 171 (1043)
Q Consensus 117 ~~a~~~la~~~~~~g~~~~Al~~~~~~l~~~p~~---~~~~~~~lg~~~~~~g~~~~A 171 (1043)
+...+.+|..|. ..+..+|+.++-+++.+.+.. .+.++..++.++..+|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444333 445555555555555553222 234445555555555555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1043 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-12 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-11 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 3e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 8e-12 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-04 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 2e-10 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 4e-09 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 3e-06 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 8e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 1e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-05 | ||
| 3zgq_A | 482 | Crystal Structure Of Human Interferon-induced Prote | 8e-05 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 4e-04 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 4e-04 | ||
| 4hoq_A | 482 | Crystal Structure Of Full-length Human Ifit5 Length | 5e-04 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 5e-04 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 6e-04 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 6e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-41
Identities = 73/349 (20%), Positives = 138/349 (39%), Gaps = 22/349 (6%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
+ G+ E A + + DN LL + + F R S F A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 203
+P A +G + GQL +A + ++ AL+L P+ ++ + LA + E A
Sbjct: 62 QNPLLAEA-YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 204 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 263
++ A + P + L N G+ + A+ P + ++
Sbjct: 121 -----VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAW 172
Query: 264 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 323
NL ++++G+ A ++ +V ++ P F+ Y LG V + F A+ + +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV-TLD-P-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 324 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 383
L + P++ L +Y + G I+ A + R+A ++ P A+ +L L
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL------KE 283
Query: 384 LDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
+ A A P + LNN+ I E+G E A + ++ AL
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-38
Identities = 74/398 (18%), Positives = 147/398 (36%), Gaps = 48/398 (12%)
Query: 4 EYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALG-------------- 45
++ G E Q+ + V +I
Sbjct: 8 REYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 46 ------VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV 99
Y+ LG + ++ + +E A ++Y A R+ ++ L+A G++
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159
E A A+ L+ + D + GR ++ Y +A++ P+ A +G
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA-WSNLG 176
Query: 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFE 217
G++ A F++A+ LDP ++A + L + + + A + RA
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-----VAAYLRALS 231
Query: 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277
+ P A+ LA ++ G L A+ P +Y NLA + KG
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVA 288
Query: 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337
+A Y ++ + L ++ + G+ A+ + K LE++P+ L
Sbjct: 289 EAEDCYNTAL-RLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
Query: 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
+ Q G++++A ++A +I P A A+ ++G L
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-35
Identities = 72/457 (15%), Positives = 148/457 (32%), Gaps = 95/457 (20%)
Query: 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179
+ A E+ G + + + + P G L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 180 QLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237
+ +P EA L + + + A +E + A + P LA G
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEA-----IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 297
Q +AL P +L + G E+A Y+ +++ +P F
Sbjct: 116 DMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP-NFA 169
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 357
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 417
+ P A N+ +++E+G
Sbjct: 230 LSLSPNHAVV--------------------------------------HGNLACVYYEQG 251
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477
+ A +++ A+ E + +
Sbjct: 252 LIDLAIDTYRRAI------------------------------------ELQPHFPD--- 272
Query: 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
NLA L++ A Y L + D+ LA I + + N++ ++ L
Sbjct: 273 ----AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
+AL+V ++ A S L + + +A ++ A
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 72/436 (16%), Positives = 143/436 (32%), Gaps = 71/436 (16%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
LA + GD+E A + M ++ +P + L + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ--EP-DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
Query: 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 381
++ P E LG++Y + GQ+++A E R A ++ P +I+L L++ D
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 382 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441
A+ A+ +A V +++G + G E A + A+
Sbjct: 119 GAVQAYVSALQYNPDL-----YCVRSDLGNLLKALGRLEEAKACYLKAI----------- 162
Query: 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 501
E N NL + + A
Sbjct: 163 -------------------------ETQPNFAV-------AWSNLGCVFNAQGEIWLAIH 190
Query: 502 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561
+ + +++DAY+ L + K ++ AL ++ + L + +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Query: 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 621
A +T+R A A +L N AL+ + + +A++ Y
Sbjct: 251 GLIDLAIDTYRRAI-ELQPHFPDAYCNLAN-----ALKEKGS--------VAEAEDCYNT 296
Query: 622 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 681
+ ++ + N + E+G + + L+ + E NLA V
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQ 351
Query: 682 QGNFALAMKMYQNCLR 697
QG A+ Y+ +R
Sbjct: 352 QGKLQEALMHYKEAIR 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-31
Identities = 70/367 (19%), Positives = 133/367 (36%), Gaps = 48/367 (13%)
Query: 5 YFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY------------- 47
+F+ ++++ ++ + A+ + G
Sbjct: 43 HFQCRRLDRSAHFSTLAIK------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96
Query: 48 -------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 100
Y L + E A Q Y A + + G LL A G +E
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEG----AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 101 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160
+A + + +E + A CV +G ++ +++A+ + P+ A + +G
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA-YINLGN 211
Query: 161 CRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEI 218
+ +A A+ RAL L P + LA + + A ++ +RA E+
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA-----IDTYRRAIEL 266
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 278
P+ A LAN G E TAL + PT + S NLA +G+ E+
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLANIKREQGNIEE 323
Query: 279 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 338
A Y ++ E+ EF + L V + G + AL ++++ + I P + +G
Sbjct: 324 AVRLYRKAL-EVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Query: 339 HIYVQLG 345
+ ++
Sbjct: 381 NTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 7e-31
Identities = 89/489 (18%), Positives = 161/489 (32%), Gaps = 104/489 (21%)
Query: 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 215
+ + Y+ G A + + + +P+N L+ L+ + Q + + A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR---LDRSAHFSTLA 59
Query: 216 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 275
+ P A A + L N + GQ + AL + P Y NLA + + GD
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGD 116
Query: 276 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 335
E A Y++++ + N P LG + LG A + K +E P+
Sbjct: 117 MEGAVQAYVSAL-QYN-PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 336 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 395
LG ++ G+I A KA +DP A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--------------------------- 206
Query: 396 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 455
N+G + E F+ A ++ AL
Sbjct: 207 -----------INLGNVLKEARIFDRAVAAYLRAL------------------------- 230
Query: 456 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 515
L N V NLA + + A YR + + D
Sbjct: 231 ------------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 516 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 575
AY LA K + ++ + + N AL++ + ++L+ L +++ + + +A +R A
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 576 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 635
+ + A +L + L+ + + L++A Y I + A +
Sbjct: 333 -EVFPEFAAAHSNLAS-----VLQQQGK--------LQEALMHYKEAIRISPTFADAYSN 378
Query: 636 AGVVLAEKG 644
G L E
Sbjct: 379 MGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 7e-30
Identities = 76/454 (16%), Positives = 153/454 (33%), Gaps = 72/454 (15%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
L + + GDF +A + ++ PDN L L I+ Q +++++ A K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
+P A+A+ +LG + + A + A P I+ N+ G
Sbjct: 62 QNPLLAEAYSNLGNVY------KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477
+ E A Q++ AL + + +
Sbjct: 116 DMEGAVQAYVSAL------------------------------------QYNPDLYC--- 136
Query: 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
V +L LL+ + A Y + ++ A+ L + A+ + L+I
Sbjct: 137 ----VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597
+A+ ++ + +A LG++ + + +A + A + + +L
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLAC-----V 246
Query: 598 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 657
+ ++ A + Y R I A L EKG ++D +
Sbjct: 247 YYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 658 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 717
D NLA++ QGN A+++Y+ L + A LA +
Sbjct: 299 RLCPTH-----ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351
Query: 718 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
+ Q+ AI ++P+ + G +++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-28
Identities = 74/458 (16%), Positives = 150/458 (32%), Gaps = 76/458 (16%)
Query: 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
LA+ + G E+ P + L+ + +++ + ++K
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 289 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 348
+ P Y LG V + G + A+ ++ L + PD + L V G +E
Sbjct: 62 Q--NP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 349 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVL 406
A + A + +P DLG LL AL + A+ KA E P
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLL------KALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 466
+N+G + +GE A F+ A+
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV------------------------------------ 196
Query: 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 526
D N ++ NL +L++ A Y L ++ + LA +
Sbjct: 197 TLDPNFLD-------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 527 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 586
+ + L+I+ A+++ +P+A L + + +A++ + A + +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHADSL 308
Query: 587 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 646
+L N R + +E+A LY + + A + VL ++G+
Sbjct: 309 NNLAN-----IKREQGN--------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 647 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 684
+ + + + D + N+ + +
Sbjct: 356 QEALMHYKEAIRISP-----TFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 3e-21
Identities = 57/297 (19%), Positives = 114/297 (38%), Gaps = 45/297 (15%)
Query: 5 YFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY------------- 47
G +E + L+ + VR + +L ALG
Sbjct: 111 LVAAGDMEGAVQAYVSALQ------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164
Query: 48 -------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 100
++ LG + Q E A ++ KA +D + ++ G +L +
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWL----AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 101 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 160
+A +A+ L ++ ACV + +G +++ Y+RA+++ P P A +
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA-YCNLAN 279
Query: 161 CRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEI 218
+ G + +A + AL+L P + ++L LA + E A + ++A E+
Sbjct: 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-----VRLYRKALEV 334
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 275
+P A A + LA+ G+ + A+ ++ PT + +Y N+ + D
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNTLKEMQD 388
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 5e-38
Identities = 47/335 (14%), Positives = 103/335 (30%), Gaps = 20/335 (5%)
Query: 47 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 106
Y + + E + Y + + K L + +
Sbjct: 274 LYMLKLNKTSHEDELR-----RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328
Query: 107 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166
+LE D N+ G + + HP L +G+ +
Sbjct: 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT-WLAVGIYYLCVN 387
Query: 167 QLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAM 224
++ +AR+ F ++ +DP+ A + A ++ A + A ++ +
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA-----ISAYTTAARLFQGTHL 442
Query: 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY- 283
+L G L + +++ A+ L +K D + A ++
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAFNKSDMQTAINHFQ 499
Query: 284 ---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340
+ K + + + LG KL + +A+ + L + ++ A+ +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559
Query: 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
Y+ A L ++ I P + A L L
Sbjct: 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 8e-35
Identities = 58/446 (13%), Positives = 131/446 (29%), Gaps = 44/446 (9%)
Query: 3 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 62
K + +L E + DE A+ + + G++ T +
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217
Query: 63 EHFILATQYYNKASRID--MHEPSTWVGKGQLLLAKGEVEQASS-AFKIVLEADRDNVPA 119
A + Y +A +D +E + LL A E + + + D + +
Sbjct: 218 R----AKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179
L + + E Y ++ + L + + + L
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL-LCKADTLFVRSRFIDVLAITTKIL 332
Query: 180 QLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237
++DP N++ + + +P A+ + ++
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKL-----YLISNDLVDRHPEKAVTWLAVGIYYLCVN 387
Query: 238 QHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 293
+ A + P ++ A S+ +G++++A Y + + +
Sbjct: 388 KI-------SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLFQ- 438
Query: 294 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353
PY LG ++LG+ A + ++ + L LG + ++ A
Sbjct: 439 -GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH 497
Query: 354 LRKAAKI-------DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IE 404
+ A + + A + +LG L + A L +
Sbjct: 498 FQNALLLVKKTQSNEKPWAATWANLGHAY------RKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 405 VLNNIGVIHFEKGEFESAHQSFKDAL 430
V I +++ K A ++L
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 7e-33
Identities = 70/541 (12%), Positives = 154/541 (28%), Gaps = 68/541 (12%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACV 126
A K I P+ Q+ G+ +A +R + L V
Sbjct: 103 AAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161
Query: 127 E---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 171
+ R ++ + + + ++ G L +A
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE--ASMCYLRGQVYTNLSNFDRA 219
Query: 172 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231
++ ++ AL +D + EA L L + + +L L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 291
+ + E L+ N S A + + + ++
Sbjct: 280 NKTSHEDEL---RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-- 334
Query: 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 351
P+ + Y + G+ +++ +P+ T A+G Y+ + +I +A+
Sbjct: 335 DPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 352 ELLRKAAKIDPRDAQAFIDLG-ELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 410
K++ +DP+ A+I I + A+ A+ TA L + +G
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLG 448
Query: 411 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 470
+ H + G A++ + +
Sbjct: 449 MQHMQLGNILLANEYLQSSY------------------------------------ALFQ 472
Query: 471 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 530
L V FN + + I+ A +L + + + + L +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Query: 531 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 590
+I+ +N+ L ++ N + + + L A + A + A+ L
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL-AISPNEIMASDLLK 591
Query: 591 N 591
Sbjct: 592 R 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 6e-27
Identities = 66/541 (12%), Positives = 137/541 (25%), Gaps = 83/541 (15%)
Query: 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287
+LA + TG + + L S Y A D++ A +
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGETN 177
Query: 288 KEINKPHEFIFP-------------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 334
Y GQV L +F A +++ L + E
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 335 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 394
L ++ E L + DA L L ++ + D + A L
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK--TSHEDELRRAEDYL 295
Query: 395 KKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 452
+ + ++L F + F L
Sbjct: 296 S-SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL---------------------- 332
Query: 453 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 512
E D +++ V L + + ++ ++ ++ +
Sbjct: 333 --------------EIDPYNLD-------VYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 513 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 572
+L + N + + +++ ++ ++ A + +A +
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431
Query: 573 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 632
A+ L LG + A E +
Sbjct: 432 TAARL-FQGTHLPYLFLGM-----QHMQLGN--------ILLANEYLQSSYALFQYDPLL 477
Query: 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMK 690
N GVV K + + F + + W NL H Y + A+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 691 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 750
L DA + +A + + L ++ ++P+ A++
Sbjct: 538 ALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
Query: 751 K 751
+
Sbjct: 596 E 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 66/578 (11%), Positives = 142/578 (24%), Gaps = 104/578 (17%)
Query: 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
+ +Y + ++ L + + A L G +A+ + + +
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLA--QVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 189 LVALAVMDL-----QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 243
+A + A G K ++ + A+ + GQ +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213
Query: 244 QLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 299
+ A ++ L ++ D E + + + F+
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
Y L + D ++ + + + L + + K +
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
IDP + + L ++G + + L+ + E+ +G+ + +
Sbjct: 334 IDPYNLDVYPLHLASL--HESGEKNKLYLISNDLVDRHPEKA--VTWLAVGIYYLCVNKI 389
Query: 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479
A + F + + +D + A W
Sbjct: 390 SEARRYFSKS-------STMDPQ------FGPA------------------------WI- 411
Query: 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539
A + A Y +Q YL L N+ L+ E +
Sbjct: 412 -----GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466
Query: 540 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 599
+ + P L+ LG + D A F
Sbjct: 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHF---------------------------- 498
Query: 600 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 659
+ A L + G + +D + D Q
Sbjct: 499 -------------QNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
Query: 660 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 697
++ +V +A VY + LA+ L
Sbjct: 546 ST-----NDANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 5e-22
Identities = 68/538 (12%), Positives = 139/538 (25%), Gaps = 91/538 (16%)
Query: 238 QHFLVEQLTETALAVTNHGPTKSHSY---YNLARSYHSKGDYEKAGLYYMASVKEINKPH 294
L++Q + A V + + + LA+ Y GDY +A + N+
Sbjct: 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARA-KCLLTKEDLYNRSS 150
Query: 295 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LG 338
Y +KL D++ AL + D K G
Sbjct: 151 AC---RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 339 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 398
+Y L ++A+E ++A +D + +AF L + + K + K
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 399 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 458
+ + E A
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----------------------------- 298
Query: 459 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 518
+ +L A L + + IL +D Y
Sbjct: 299 --------NGLEKSSD-------LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343
Query: 519 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 578
A + N+ + + + +G L + +A+ F +S
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM- 402
Query: 579 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 638
D + A + + + E ++A YT G+
Sbjct: 403 DPQFGPAWIGFAH-----SFAIEGE--------HDQAISAYTTAARLFQGTHLPYLFLGM 449
Query: 639 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 698
+ G ++ + P + L V F + + A+ +QN L
Sbjct: 450 QHMQLGNILLANEYLQSSYALFQYD-----PLLLNELGVVAFNKSDMQTAINHFQNALLL 504
Query: 699 FYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
A L + + + + +L + + L+ ++ + +
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 65/455 (14%), Positives = 140/455 (30%), Gaps = 41/455 (9%)
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361
L ++ A EKVL+I + + L +Y G +A+ LL K +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 362 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-----------EVLNNIG 410
A ++ L+ D AL+ K + + G
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 411 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEND 469
++ F+ A + +K+AL ++D+K + + S +L + N
Sbjct: 208 QVYTNLSNFDRAKECYKEAL-------MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 470 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 529
+ + + L+ L D + + Y + + D L A R+
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 530 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 589
+ + + L+++ + + ++ + K D + + L++
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPEKAVTWLAV 379
Query: 590 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 649
G Y+ + + +A+ +++ A G A +G+ D +
Sbjct: 380 G--IYYLCVNK-----------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 650 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 709
+T G+ ++ L + GN LA + Q+ + D +L
Sbjct: 427 ISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLN 479
Query: 710 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744
L + Q A+ L +
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 4e-35
Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 18/302 (5%)
Query: 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 142
V + + + +V+E D + L + ++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 143 ALQVHPSCPGAIRLGIGLCRYKLGQLG-KARQAFQRALQLDPENVEALVALAV--MDLQA 199
+ ++PS P + +G +G AR+ +A L+ A +A
Sbjct: 82 LVDLYPSNPVS-WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 259
++ A M A ++ C + + Y+ + T L E+ AL++ P
Sbjct: 141 HDQA-----MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PED 192
Query: 260 SHSYYNLARSYHSKGDYEKAGLYY------MASVKEINKPHEFIFPYYGLGQVQLKLGDF 313
+ + G+++ A ++ + ++ ++ LG V KL +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 314 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 373
AL + L + P N T A+G+I+ +G E A + A + D + LG
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 374 LL 375
+
Sbjct: 313 CI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-28
Identities = 43/320 (13%), Positives = 93/320 (29%), Gaps = 29/320 (9%)
Query: 40 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV 99
++ +L + Y + + + D S L+ +
Sbjct: 24 VVVSLAERHYYNCDFKM-----------CYKLTSVVMEKDPFHASCLPVHIGTLVELNKA 72
Query: 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPSCPGAIRLGI 158
+ +++ N + C G ++ + +A + + A +
Sbjct: 73 NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA-WIAY 131
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAF 216
G + +A A+ A QL ++ + + ++ A +A
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA-----ERFFSQAL 186
Query: 217 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL------AVTNHGPTKSHSYYNLARSY 270
I P ++ + F G+ E+ AL NL
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 271 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330
Y +A Y+ + P Y +G + +G+F +A+ F L + D+
Sbjct: 247 RKLKKYAEALDYHRQ-ALVLI-PQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303
Query: 331 CETLKALGHIYVQLGQIEKA 350
++ LGH +A
Sbjct: 304 TFSVTMLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 8e-28
Identities = 45/339 (13%), Positives = 105/339 (30%), Gaps = 54/339 (15%)
Query: 100 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 159
+ + + ++ ++N+ ++ A + + + ++ P + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI 63
Query: 160 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL---QANEAAGIRKGMEKMQRAF 216
+L + + + + L P N + A+ L NE A + +A
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA-----RRYLSKAT 118
Query: 217 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276
+ A + S+ + ++
Sbjct: 119 TLEKTYGPA-------------------------------------WIAYGHSFAVESEH 141
Query: 277 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 336
++A Y + ++ K P +G + + A F + L I P++ +
Sbjct: 142 DQAMAAYFTAA-QLMK--GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198
Query: 337 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA---FKTARTL 393
+G + Q G+ + A++ A + + ++ G + A
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 394 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
++A +P + IG IH G FE+A F AL
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 48/349 (13%), Positives = 101/349 (28%), Gaps = 49/349 (14%)
Query: 210 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 269
+ + + + LA ++ + +LT + P + +
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGT 65
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFEKVLEIYP 328
+ V P + ++ +G L +G A K +
Sbjct: 66 LVELNKANELFYLSHKLVD--LYPSNPV-SWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 388
A GH + + ++A AA++ + +G + K
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY------GLTNNSK 176
Query: 389 TARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 446
A +A P V++ +GV+ F+ GE+++A + F DAL
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL---------------- 220
Query: 447 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 506
+ +L NL + ++ A +R
Sbjct: 221 ------------------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Query: 507 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 555
L Y + I N + +++ + AL + +++MLG
Sbjct: 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 7e-16
Identities = 41/307 (13%), Positives = 88/307 (28%), Gaps = 34/307 (11%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
L + DF+ V+E P + L V+L + + L K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
+ P + ++ +G G + AR L KA G +
Sbjct: 85 LYPSNPVSWFAVGCYY--LMVGHKNEH---ARRYLSKATTLEKTYGPAWIAYGHSFAVES 139
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM---LQFKDMQLFHRFENDGNH-V 473
E + A ++ A L + L++ E + +
Sbjct: 140 EHDQAMAAYFTAA-------QLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
Query: 474 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL---------FKYQDYVDAYLRLAAIA 524
+ V+ + + Q + A + L + L +
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 525 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 584
+ +++ +AL + + + S +G + ++ A + F A D++
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTF 305
Query: 585 ATLSLGN 591
+ LG+
Sbjct: 306 SVTMLGH 312
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 64/381 (16%)
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
+ T + ++ +N + + +L + + +L + DP A L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 376 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGI 434
+ A + F + L+ +G + G E A + A
Sbjct: 67 --VELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRYLSKA----- 117
Query: 435 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 494
T L+ A W
Sbjct: 118 --TTLEKT------YGPA------------------------WI------AYGHSFAVES 139
Query: 495 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554
+ A Y + L + NN +L+ ++AL + + P + +
Sbjct: 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Query: 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF---AALRNEKRAPKLEATH 611
G + +N +W A++ F A + + T+ R K+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-------- 251
Query: 612 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 671
+A + + + +V N + G + + G F+ + D F
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-----DDTFS 306
Query: 672 WINLAHVYFAQGNFALAMKMY 692
L H + A
Sbjct: 307 VTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 39/371 (10%), Positives = 108/371 (29%), Gaps = 66/371 (17%)
Query: 388 KTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 445
K + T++ ++ + + ++V+ ++ H+ +F+ ++ +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM--------------- 49
Query: 446 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 505
E D H + L L + E L
Sbjct: 50 ---------------------EKDPFHASCLPVHIGTLVELNKANE-------LFYLSHK 81
Query: 506 ILFKYQDYVDAYLRLAAIAKARNNL-QLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 564
++ Y ++ + + + + +++A + Y A G +
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141
Query: 565 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 624
+A + A+ L +G + A+ +++ +
Sbjct: 142 DQAMAAYFTAAQL-MKGCHLPMLYIGL-----EYGLTNN--------SKLAERFFSQALS 187
Query: 625 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ----VQEAASGSVFVQMPDVWINLAHVYF 680
+ + + GVV + G++ ++ F ++ + + + NL HV
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 681 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 740
+A A+ ++ L +A + H +++ A+ L +
Sbjct: 248 KLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 741 LRFDAGVAMQK 751
G ++
Sbjct: 306 SVTMLGHCIEM 316
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 21/126 (16%)
Query: 5 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
F+ G+ + F LE I ++E +LN LG L K
Sbjct: 203 AFQNGEWKTAEKWFLDALE--KIKAIGNEVTVDKWE--PLLNNLGHVCRKLKKYA----- 253
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA- 119
A Y+ +A + ST+ G + G E A F L RD+ +
Sbjct: 254 ------EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
Query: 120 -LLGQA 124
+LG
Sbjct: 308 TMLGHC 313
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-34
Identities = 82/578 (14%), Positives = 164/578 (28%), Gaps = 69/578 (11%)
Query: 8 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 67
Q+ SP + YA L G ++
Sbjct: 4 MNGEPDIAQLKG--LSPSQRQAYAVQ-------LKNRGNHFFTAKNFN-----------E 43
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
A +YY A +D +EP + ++ G++E+ LE D+ ALL +A
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPE 184
+ G ++D++ +I + K + R Q+ P
Sbjct: 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163
Query: 185 NVEALVAL-----AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 239
N + N ++ + A + +AN
Sbjct: 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223
Query: 240 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 299
L+ + + + + K + A + S+ ++
Sbjct: 224 MYHSLLSANTVDDPLR-ENAALALCYTGIFHFLKNNLLDAQVLLQESI-NLHPTPNS--- 278
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
Y L + + F+K +++ P+ T G +Y L + A+E +KA
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
++P + +I L LL F + + + P EV I ++G
Sbjct: 339 LNPENVYPYIQLACLL------YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477
+F++A + + A L + + K +V +
Sbjct: 393 DFDTAIKQYDIA------KRLEEVQEKIHVGIGPL--------------IGKATILARQS 432
Query: 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
++ + + A L A + LA + + +IEL
Sbjct: 433 SQDPTQLDEEKFNA-------AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 538 NEALKVNGKYPNALSMLGDLEL-KNDDWVKAKETFRAA 574
++ + L E K ++A A
Sbjct: 486 EDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 69/451 (15%), Positives = 129/451 (28%), Gaps = 55/451 (12%)
Query: 5 YFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY------YTYLGKI 54
Y G +E+ + LE I ++ R + +LG + + L
Sbjct: 69 YISTGDLEKVIEFTTKALE------IKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122
Query: 55 ETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 114
E + ++ + Q+L + + F LE
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182
Query: 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQ 173
N Y + ALQ S + L
Sbjct: 183 VN------------TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230
Query: 174 AFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231
A L AL + A +Q + ++P + +LA
Sbjct: 231 ANTVDDPLRENAALALCYTGIFHFLKNNLLDA-----QVLLQESINLHPT-PNSYIFLAL 284
Query: 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 291
+ + A+ P +YY+ + Y DY+ A + + +N
Sbjct: 285 TLADKENSQEFFKFFQKAVD---LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ-SLN 340
Query: 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 351
E ++PY L + K G F + F + +P E I G + A
Sbjct: 341 P--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI 398
Query: 352 ELLRKAAKIDPRDAQAFIDLGELL----------ISSDTGAALDAFKTARTLLKKAGEEV 401
+ A +++ + + +G L+ T + F A LL KA E
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458
Query: 402 P--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
P + + + + + + A + F+D+
Sbjct: 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-25
Identities = 68/484 (14%), Positives = 147/484 (30%), Gaps = 40/484 (8%)
Query: 274 GDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 332
G + ++ + G +F A+ ++ +E+ P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 333 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTAR 391
+ Y+ G +EK E KA +I P ++A + S + A+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VL 119
Query: 392 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 451
+L +L K E+ + T L S +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 452 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL--EQIHDTVAASVLYRLILFK 509
S + + + ++ ++ + +A L + + +
Sbjct: 180 VSSVN-TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 510 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 569
++ A +NNL + L+ E++ ++ N+ L ++ + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFK 297
Query: 570 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 629
F+ A + + G + + AKE + + + N
Sbjct: 298 FFQKAV-DLNPEYPPTYYHRGQ-----MYFILQD--------YKNAKEDFQKAQSLNPEN 343
Query: 630 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 689
+Y +L ++G+F S+ F + + F +P+V A + +G+F A+
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKL-----KFPTLPEVPTFFAEILTDRGDFDTAI 398
Query: 690 KMYQNCLR------KFYYN--------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 735
K Y R K + T T + E++ K L +A L
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458
Query: 736 PSNY 739
P +
Sbjct: 459 PRSE 462
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-25
Identities = 68/681 (9%), Positives = 170/681 (24%), Gaps = 164/681 (24%)
Query: 68 ATQYYNKASRIDMHEPSTWVG----KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 123
+ + + + +G +A ++ +E D +
Sbjct: 6 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 65
Query: 124 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 183
+ + G +EF +AL++ P A L LG A L L+
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKA-LLRRASANESLGNFTDAMFDLS-VLSLNG 123
Query: 184 ENVEALVALAVMDLQANEAAGIRKGM--EKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
+ A + + +A + + R ++ P ++
Sbjct: 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----------- 172
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
+ S ++ +Y+ A +++ + + +
Sbjct: 173 ------------------IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY-LV 213
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361
+ + S L+ + + L G + + AQ LL+++ +
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 362 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 421
P + + +K +
Sbjct: 274 PTP---------------------------------------NSYIFLALTLADKENSQE 294
Query: 422 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 481
+ F+ A+ + + +
Sbjct: 295 FFKFFQKAV------------------------------------DLNPEYPP------- 311
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
++ ++ + D A ++ + V Y++LA + + S NE
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601
P + ++ D+ A + + A
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK-------------------------- 405
Query: 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661
+ E H+ ++ + L + ++ +F+ + L T+ E
Sbjct: 406 RLEEVQEKIHVGIG------PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459
Query: 662 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 721
+ I LA + A++++++ T + A T EA +
Sbjct: 460 -----RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDE--KLQATTFAEAAKI 510
Query: 722 QD---CKKSLLRAIHLAPSNY 739
Q + + L + Y
Sbjct: 511 QKRLRADPIISAKMELTLARY 531
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-33
Identities = 42/373 (11%), Positives = 100/373 (26%), Gaps = 22/373 (5%)
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 122
E +A + + A V++ + V A+
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182
+ L +A + P AI G + L + + +A L
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 183 PENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
P+ V A+ L+ + + + +A + P +A+
Sbjct: 205 PQQVVAIASNGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
+ + A +T P + + + + + ++ + + + +
Sbjct: 260 RLLPVLCQAHGLT---PQQVVAIASNSGGKQALETVQRLLPVLCQAH-GLT--PQQVVAI 313
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
G + L + L + + P + + L +++ +L +A +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 418
P A G AL+ + +L +A P + + +
Sbjct: 374 TPEQVVAIASNGGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427
Query: 419 FESAHQSFKDALG 431
+ A G
Sbjct: 428 VQRLLPVLCQAHG 440
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-32
Identities = 43/374 (11%), Positives = 100/374 (26%), Gaps = 28/374 (7%)
Query: 46 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 105
V + + +A + + G A V++
Sbjct: 141 VAIASHDGGKQALETVQA----LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 165
V A+ + L +A + P AI G + L
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA-SNGGGKQAL 255
Query: 166 GQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 223
+ + +A L P+ V A+ + L+ + + + +A + P
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL-----LPVLCQAHGLTPQQV 310
Query: 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 283
+A+ + + A +T P + + + + ++
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 284 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 343
+ + E + G + L + L + + P+ + +
Sbjct: 368 CQAH-GLT--PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
Query: 344 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 403
L +++ +L +A + P+ A G AL++ + A +
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGR------PALESIVAQLSRPDPALAALT- 477
Query: 404 EVLNNIGVIHFEKG 417
N+ V G
Sbjct: 478 ---NDHLVALACLG 488
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 2e-31
Identities = 40/364 (10%), Positives = 94/364 (25%), Gaps = 22/364 (6%)
Query: 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 131
+ + A V++ V A+ +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191
L +A + P AI + L + +A L PE V A+ +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIA-SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179
Query: 192 LAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 249
L+ + + + +A + P +A+ + + A
Sbjct: 180 NGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 250 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 309
+T P + + + + ++ + + + +
Sbjct: 235 HGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNSGGKQA 288
Query: 310 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 369
L + L + + P + + G L +++ +L +A + P+ A
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 348
Query: 370 DLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 427
AL+ + +L +A P + + + G +
Sbjct: 349 SHDGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 402
Query: 428 DALG 431
A G
Sbjct: 403 QAHG 406
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-31
Identities = 55/512 (10%), Positives = 132/512 (25%), Gaps = 65/512 (12%)
Query: 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 126
+A + ++D + +G + + ++ L + V A+
Sbjct: 22 VAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGG 81
Query: 127 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 186
+ L +A + P AI + L + + +A L PE V
Sbjct: 82 KQALETVQRLLPVLCQAHGLTPQQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Query: 187 EALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 244
A+ + L+ +A + + +A + P +A+ +
Sbjct: 141 VAIASHDGGKQALETVQAL-----LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 245 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304
+ A +T P + + + + ++ + + + G
Sbjct: 196 VLCQAHGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNG 249
Query: 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 364
+ L + L + + P + + L +++ +L +A + P+
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Query: 365 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 422
A G AL+ + +L +A P + + + +
Sbjct: 310 VVAIASNGGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
Query: 423 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482
A V +
Sbjct: 364 LPVLCQAH------------------------------------GLTPEQVVAIASNGGG 387
Query: 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 542
L + + A L + V A +A +Q + ++ +A
Sbjct: 388 KQALETVQRLLPVLCQAHGLT-------PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440
Query: 543 VNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
+ + A++ G + V A
Sbjct: 441 LTPQQVVAIASNGGGRPALESIVAQLSRPDPA 472
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 8e-24
Identities = 52/534 (9%), Positives = 120/534 (22%), Gaps = 87/534 (16%)
Query: 166 GQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221
L A + LQLD + + AV + A A + P
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA-------PLNLTPE 70
Query: 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 281
+A+ + + A +T P + + + + ++
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLP 127
Query: 282 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 341
+ E + + L ++ L + + P+ + + G
Sbjct: 128 VL---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 342 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 401
L +++ +L +A + P+ A G AL+ + +L +A
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK------QALETVQRLLPVLCQAHGLT 238
Query: 402 P--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 459
P + + + G + A
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAH----------------------------- 269
Query: 460 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 519
V + L + + A L V A
Sbjct: 270 -------GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL-------TPQQVVAIAS 315
Query: 520 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 579
+A +Q + ++ +A + + A++ + + + A
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT 374
Query: 580 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 639
+ A S G K +++ + + + A
Sbjct: 375 PEQVVAIASNGG-------------GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 693
+ Q Q + A + +
Sbjct: 422 KQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGRPALESIVAQLSRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 45/529 (8%), Positives = 113/529 (21%), Gaps = 78/529 (14%)
Query: 213 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 272
++ + + H LT L +T P + + + +
Sbjct: 28 GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLT---PEQVVAIASHDGGKQA 84
Query: 273 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 332
++ + + + + L + L + + P+
Sbjct: 85 LETVQRL---LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141
Query: 333 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 392
+ + L ++ +L +A + P A G AL+ +
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK------QALETVQRLLP 195
Query: 393 LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 450
+L +A P + + + G + A G L
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG-------LTP--------- 239
Query: 451 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 510
V + L + + A L
Sbjct: 240 --------------------QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP------ 273
Query: 511 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 570
V A + +A +Q + ++ +A + + A++ G + + +
Sbjct: 274 -QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 571 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 630
A + A S K +++ + + +
Sbjct: 333 LCQAH-GLTPQQVVAIASHDG-------------GKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 631 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 690
A G + Q + + A +
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTP-----EQVVAIASHDGGKQALETVQRLLP 433
Query: 691 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 739
+ + E A+ +++
Sbjct: 434 VLCQAHG--LTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 39/454 (8%), Positives = 90/454 (19%), Gaps = 38/454 (8%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
++ + A L++ + G + L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
+ P A AL+ + +L +A P + + +
Sbjct: 67 LTPEQVVAIASHDGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477
+ A G L + L L
Sbjct: 121 TVQRLLPVLCQAHG------LTPEQVVAIASHDGGKQALETVQALLPVLCQA---HGLTP 171
Query: 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
+V + + + + + V A +A +Q + ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597
+A + + A++ G + + + A + A S
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASNSG-----G 285
Query: 598 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 657
+ + +++ + + + A G + Q
Sbjct: 286 KQALET--------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 337
Query: 658 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 717
Q + A + + +
Sbjct: 338 GLTP-----QQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASNGGGKQA 390
Query: 718 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
E Q L +A L P Q
Sbjct: 391 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 6e-11
Identities = 41/492 (8%), Positives = 102/492 (20%), Gaps = 105/492 (21%)
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
H ++ + + + AG +++ G + +R+ALT
Sbjct: 4 HHHHHQWSGARALEALLTVAGELR-GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG 62
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 379
L + P+ + + L +++ +L +A + P+
Sbjct: 63 --APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ--------------- 105
Query: 380 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 439
+ + + + A
Sbjct: 106 -----------------------VVAIASHDGGKQALETVQRLLPVLCQAH--------- 133
Query: 440 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 499
L +V + + + + A
Sbjct: 134 ----------------------------------GLTPEQVVAIASHDGGKQALETVQAL 159
Query: 500 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 559
+ + V A +A +Q + ++ +A + + A++ G +
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219
Query: 560 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 619
+ + A + A S G + + +++ +
Sbjct: 220 ALETVQRLLPVLCQAH-GLTPQQVVAIASNGG-----GKQALET--------VQRLLPVL 265
Query: 620 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679
+ + A + Q Q +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGK 320
Query: 680 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 739
A + + + E Q L +A L P
Sbjct: 321 QALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 740 TLRFDAGVAMQK 751
G Q
Sbjct: 379 VAIASNGGGKQA 390
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 64/392 (16%), Positives = 122/392 (31%), Gaps = 73/392 (18%)
Query: 4 EYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR 59
+ G+ + QF ++ D Y R + +GK +
Sbjct: 12 KLLAAGQLADALSQFHAAVD------GDPDNYIAYYRR-------ATVFLAMGKSK---- 54
Query: 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119
A K + M + + +G LLL +G++++A FK VL+++
Sbjct: 55 -------AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107
Query: 120 ---------------LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164
L QA F+ Y+ ++ F + L+V R C K
Sbjct: 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL-RELRAECFIK 166
Query: 165 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 224
G+ KA + A +L +N EA ++ + Q + + +++ ++
Sbjct: 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKLDQDHKR 223
Query: 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 284
+ K + A G Y A Y
Sbjct: 224 CFAHYKQ-------------------------VKKLNKLIESAEELIRDGRYTDATSKYE 258
Query: 285 ASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 343
+ +K E + + + K A+ +VL++ PDN LK Y+
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 344 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
++A + A + + D Q L +
Sbjct: 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-28
Identities = 61/366 (16%), Positives = 124/366 (33%), Gaps = 51/366 (13%)
Query: 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 141
+ + G+ LLA G++ A S F ++ D DN A +A V G+ +L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201
+ + + A RL G K G+L +A F++ L+ +P E A +
Sbjct: 62 KVIALKMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES-------- 112
Query: 202 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 261
++ +A E+ + AL+ + + L V +
Sbjct: 113 ---------QLVKADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEV---CVWDAE 155
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
A + +G+ KA A+ K K + +Y + + +LGD +L+
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKL--KS-DNTEAFYKISTLYYQLGDHELSLSEVR 212
Query: 322 KVLEIYPDNCETLKALGHI------------YVQLGQIEKAQELLRKAAKIDPRDAQAFI 369
+ L++ D+ + ++ G+ A K +P A+ +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 370 DLGELLISSDTGAALDA---FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 424
E + A + + + P + L + + + ++ A Q
Sbjct: 273 RSKERI-----CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327
Query: 425 SFKDAL 430
++ A
Sbjct: 328 DYEAAQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-21
Identities = 58/465 (12%), Positives = 138/465 (29%), Gaps = 120/465 (25%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
+ L + + G A + A+V + + P + YY V L +G ++AL +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAV-DGD-P-DNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 381
KV+ + D GH+ ++ G++++A++ +K K +P + + +L+ + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-- 119
Query: 382 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441
++ L + + F+ ++ +A L
Sbjct: 120 ---------------------MQRLRSQALDAFDGADYTAAITFLDKIL----------- 147
Query: 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 501
E EL + + I D
Sbjct: 148 -------------------------EVCVWDAELRELRAECFIKEGEPRKAISD------ 176
Query: 502 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561
+ D +A+ +++ + + +LS+ V E LK++ + + +
Sbjct: 177 -LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV---- 231
Query: 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 621
K + L + R A Y
Sbjct: 232 -------------------KKLNKLIESAE-----ELIRDGR--------YTDATSKYES 259
Query: 622 VI------VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 675
V+ ++T ++ + + + ++V + + + +
Sbjct: 260 VMKTEPSVAEYTVRSK--ERICHCFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDR 312
Query: 676 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 720
A Y + + A++ Y+ + D QI L + +Q
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 3e-20
Identities = 55/434 (12%), Positives = 120/434 (27%), Gaps = 129/434 (29%)
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAF 216
G GQL A F A+ DP+N A A + + ++AA + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVI 64
Query: 217 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276
+ A +G
Sbjct: 65 ALKMDFTAA-------------------------------------RLQRGHLLLKQGKL 87
Query: 277 EKAGLYY------------MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 324
++A + + + + D+ +A+T +K+L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 325 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 384
E+ + E + +++ G+ KA L+ A+K+ + +AF
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF---------------- 191
Query: 385 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 444
I ++++ G+ E + ++ L LD
Sbjct: 192 ----------------------YKISTLYYQLGDHELSLSEVRECL-------KLDQ--- 219
Query: 445 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 504
D +K ++ ++ L R + A+ Y
Sbjct: 220 ----DHKRCFAHYKQVKKLNKLIESAE----------ELIRDGRYTD-------ATSKYE 258
Query: 505 LILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 560
++ + + R+ +I + +E L++ NAL + L
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 561 NDDWVKAKETFRAA 574
+ + +A + + AA
Sbjct: 319 EEMYDEAIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 55/455 (12%), Positives = 115/455 (25%), Gaps = 108/455 (23%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+ A G + ++G+
Sbjct: 66 LKMDFTAA--------------------------------------RLQRGHLLLKQGKL 87
Query: 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479
+ A FK L + S + + QL + ++ ++
Sbjct: 88 DEAEDDFKKVL----------------KSNPSEQEEKEAESQLVK-----ADEMQRLRSQ 126
Query: 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539
F+ A I IL + A + +I +
Sbjct: 127 ALDAFDGADYTAAITF-------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 540 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 599
A K+ A + L + D + R L L + ++
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC------------LKL-DQDHKRCFA 226
Query: 600 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 659
+ K+ KL L G++ + + V +
Sbjct: 227 HYKQVKKLNKLIES-----------------------AEELIRDGRYTDATSKYESVMKT 263
Query: 660 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 719
SV + H + A+++ L+ + L A + E
Sbjct: 264 -EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEE 320
Query: 720 QWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQK 751
+ + + A ++ A +++
Sbjct: 321 MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 20/258 (7%)
Query: 514 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 573
V+ +L L A L ++ + A+ + A + L A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 574 ASDATDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 628
A + A L G+ A + K+ K + +E +
Sbjct: 63 V-IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKAD 118
Query: 629 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688
+ + + + + ++ E ++ A + +G A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKA 173
Query: 689 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFD 744
+ + + + + + ++ +Y+ + + + L + +
Sbjct: 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 745 AGVAMQKFSASTLQKTRR 762
+ SA L + R
Sbjct: 232 KKLNKLIESAEELIRDGR 249
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 7e-31
Identities = 61/383 (15%), Positives = 120/383 (31%), Gaps = 39/383 (10%)
Query: 42 NALGVYYTYLGKIETKQREKEEHFIL------------ATQYYNKASRIDMHEPSTWVGK 89
++ GV + E+H L A ++ A D + +
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
+ LA G+ + A V++ D A L + + +G+ ++ + +K+ L+ +PS
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 150 CPGAIR--------------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195
L + G A + L++ + E A
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 196 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL----- 250
++ E RK + ++ A ++ A ++ ++ G H L L
Sbjct: 187 FIKEGE---PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 251 ---AVTNHGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQ 305
++ K A G Y A Y + +K E + + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
K A+ +VL++ PDN LK Y+ ++A + A + + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 366 QAFIDLGELLISSDTGAALDAFK 388
Q L + D +K
Sbjct: 364 QIREGLEKAQRLLKQSQKRDYYK 386
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 58/377 (15%), Positives = 130/377 (34%), Gaps = 35/377 (9%)
Query: 80 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139
M + + G+ LLA G++ A S F ++ D DN A +A V G+ +L
Sbjct: 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD 82
Query: 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 199
+ +Q+ A RL G K G+L +A F++ L+ +P E A + +
Sbjct: 83 LTKVIQLKMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
Query: 200 NEAAGIRKGMEK------------MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 247
+ + + + E+ + A A F G+ +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 248 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---------MASVKEINKPHEFIF 298
A + + ++Y ++ Y+ GD+E + K + +
Sbjct: 202 AASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258
Query: 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET----LKALGHIYVQLGQIEKAQELL 354
+ ++ G + A + +E V++ P E + + H + + + +A +
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318
Query: 355 RKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 413
+ +++P + A D E + A+ ++TA+ + ++ +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ-----QIREGLEKAQ 373
Query: 414 FEKGEFESAHQSFKDAL 430
+ + +
Sbjct: 374 RLLKQSQKRDYYKILGV 390
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 9e-27
Identities = 64/511 (12%), Positives = 131/511 (25%), Gaps = 115/511 (22%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
G L + Q+ + + L G+ +D+L + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVD 54
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 203
P A +G+ A + +QL + A + + + A
Sbjct: 55 GDPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113
Query: 204 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 263
+ ++ + P + +
Sbjct: 114 -----EDDFKKVLKSNPSENEEKEAQSQL----------------------IKSDEMQRL 146
Query: 264 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 323
+ A + GDY A + ++ E + +K G+ R A+++ +
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---RELRAECFIKEGEPRKAISDLKAA 203
Query: 324 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 383
++ DN E + +Y QLG E + +R+ K+D + F
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-------------- 249
Query: 384 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 443
+K + L K G + A ++ +
Sbjct: 250 --HYKQVKKLNKL----------IESAEELIRDGRYTDATSKYESVM------------- 284
Query: 444 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 503
+ + + E V + + V A +
Sbjct: 285 -----------------------KTEPSIAEY---TVRSKERICHCFSKDEKPVEAIRVC 318
Query: 504 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL---- 559
+L D V+A A +I+ A + N L +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378
Query: 560 -KNDDWVKAKETFRAASDATDGKDSYATLSL 589
+ D+ K R A + +Y L+L
Sbjct: 379 SQKRDYYKILGVKRNAKKQ-EIIKAYRKLAL 408
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 4e-20
Identities = 60/442 (13%), Positives = 127/442 (28%), Gaps = 75/442 (16%)
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
H +++ ++ Y ++ + ++ K + LG+ L G AL+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS-------MADVEK-------HLELGKKLLAAGQLADALSQ 48
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS- 378
F ++ PDN +++ +G+ + A L K ++ A + G LL+
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108
Query: 379 DTGAALDAFKTARTL----------LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 428
A D FK + + ++ L + + F G++ +A
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168
Query: 429 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 488
L E EL +
Sbjct: 169 IL------------------------------------EVCVWDAELRELRAECFIKEGE 192
Query: 489 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 548
+ I D + D +A+ +++ + + +LS+ V E LK++ +
Sbjct: 193 PRKAISD-------LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Query: 549 NALSMLGDLELKNDDWVKAKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPK 606
+ ++ N A+E R +DAT +S Y +
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305
Query: 607 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 666
+ +A + + V+ N+ A + +D + + QE
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND--- 362
Query: 667 QMPDVWINLAHVYFAQGNFALA 688
+ L
Sbjct: 363 --QQIREGLEKAQRLLKQSQKR 382
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 5e-18
Identities = 48/367 (13%), Positives = 109/367 (29%), Gaps = 49/367 (13%)
Query: 5 YFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY-YTYLGKIETKQR 59
KQGK+++ F+++L+ + + + + ++ + +
Sbjct: 104 LLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157
Query: 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119
+ A + +K + + + + + + +GE +A S K + DN A
Sbjct: 158 DYTA----AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Query: 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-----------GIGLCRYKLGQL 168
+ + + G + SL + L++ + G+
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 169 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALN 227
A ++ ++ +P E V + + ++ P AL
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
Query: 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287
A + + ++ + H L ++ +K Y + V
Sbjct: 334 DRAEAYLIEEMY---DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390
Query: 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 347
K K E I Y L L+ +PDN + + + I
Sbjct: 391 KRNAKKQEIIKAYRKLA-------------------LQWHPDNFQNEEEKKKAEKKFIDI 431
Query: 348 EKAQELL 354
A+E+L
Sbjct: 432 AAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 30/274 (10%), Positives = 82/274 (29%), Gaps = 16/274 (5%)
Query: 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 542
L + L A + + D AY R A + A + ++ + + ++
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 543 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 602
+ + A G L LK +A++ F+ + ++ R
Sbjct: 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
Query: 603 RAPKLEAT-HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661
+A + A +++ + ++G+ + + +
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 662 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYN----TDAQILLYL 711
+ + + ++ +Y+ G+ L++ + CL+ + + + L+
Sbjct: 209 DN-----TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263
Query: 712 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 745
A ++ D + PS +
Sbjct: 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 35/290 (12%), Positives = 84/290 (28%), Gaps = 30/290 (10%)
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA---------------YLRLAAIAKA 526
LL + A ++ +L + A A
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155
Query: 527 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 586
+ +I +++ L+V + + +K + KA +AAS ++ A
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAF 214
Query: 587 LSLGN-----WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641
+ ++ +L + KL+ H ++ Y +V L + L
Sbjct: 215 YKISTLYYQLGDHELSLSEVRECLKLDQDH-KRCFAHYKQVK-----KLNKLIESAEELI 268
Query: 642 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 701
G++ + + V + + + H + A+++ L+
Sbjct: 269 RDGRYTDATSKYESVMKTEPSIAEYTVR-SKERICHCFSKDEKPVEAIRVCSEVLQ--ME 325
Query: 702 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
+ L A + E + + + A ++ +R A +
Sbjct: 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 23/254 (9%), Positives = 62/254 (24%), Gaps = 39/254 (15%)
Query: 513 YVDAYLRLAAI-----------------------AKARNNLQLSIELVNEALKVNGKYPN 549
+ + A L ++ + A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 550 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW-----NYFAALRNEKRA 604
A + L A + A L G+ A + K+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 605 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 664
K + +E + + + + + G + + ++ E
Sbjct: 121 LKSNPSE---NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD- 176
Query: 665 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 724
++ A + +G A+ + + NT+A ++ +Y+ +
Sbjct: 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELS 230
Query: 725 KKSLLRAIHLAPSN 738
+ + L +
Sbjct: 231 LSEVRECLKLDQDH 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 68/447 (15%), Positives = 133/447 (29%), Gaps = 80/447 (17%)
Query: 51 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 110
L + E + E+ T++ N+ + M L KG+ E A +
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCN-----LLAYLKHLKGQNEAALECLRKAE 78
Query: 111 EADRDNVPALLGQ---------ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR------ 155
E + A V ++ GR SD + + V R
Sbjct: 79 ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138
Query: 156 ---LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 212
G + Q +A+ F++AL+ P+N E LA+ + + + ++ +
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 213 QRAFEIYPYCAMALNYLANHFF----FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 268
++A + P LA + E+L E AL P + + A+
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAK 255
Query: 269 SYHSKGDYEKA---------------------GLYYMASVKEINKPHEFIFPYYGLGQVQ 307
Y K + +KA G Y A V ++ E G+ +
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE-----NGMYGKR 310
Query: 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-- 365
L A+ + +K E + L ++ Q E+A+ +K +
Sbjct: 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Query: 366 -QAFIDLGELL-------------------ISSDTGAALDAFKTARTLLKKAGEEVP--I 403
+ G I+ + + + K +
Sbjct: 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADS 430
Query: 404 EVLNNIGVIHFEKGEFESAHQSFKDAL 430
E L+ + + + + A + + L
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 2e-28
Identities = 63/416 (15%), Positives = 137/416 (32%), Gaps = 51/416 (12%)
Query: 5 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEH 64
+G+ E + L + E+ + Y ++G++ Q ++
Sbjct: 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120
Query: 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 124
+ ++ + RI+ E G +L + E+A F+ LE N G A
Sbjct: 121 KHVCEKFSS-PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLA 179
Query: 125 CVEF---NRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGL--CRYKLGQLGKARQAFQRA 178
+ N ++++ ++A++++P + L + L R + + G+ + + A
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239
Query: 179 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 238
L+ P + L + A + +E K +E +++A E P A + +
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVF 296
Query: 239 HFL------------VEQLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 282
+ + +L A+A LA + YE+A Y
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 283 YMASVKEINKPHEFIFPYYGLGQVQL-KLGDFRSALTNFEKVLEIYPDNCETLKA----- 336
+ + P + G QL ++ A+ +F + ++I + E K
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 337 -------------------LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 373
L + ++++A E + + A GE
Sbjct: 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-21
Identities = 68/494 (13%), Positives = 145/494 (29%), Gaps = 74/494 (14%)
Query: 92 LLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPS 149
L+ + ++ E A + A ++ +G+ +LE ++A ++
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 150 CPGA--------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201
Y +G+L + + + + +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 202 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 261
++ G + +RA + E AL P
Sbjct: 144 WTRLKCGGNQNERAKVCF---------------------------EKALEKK---PKNPE 173
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG----QVQLKLGDFRSAL 317
LA + + ++ + + I + + L +++ + +
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 318 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-- 375
E+ LE P + L++ Y + + +KA ELL+KA + P +A +G
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 376 -----------ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 422
L+ A LKKA E V + + +H ++E A
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Query: 423 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482
F+ L K + + ++ + V++ K
Sbjct: 354 EYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-QKSRE 407
Query: 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 542
+ L++I ++ L K +A LA + + +Q + E L+
Sbjct: 408 KEKMKDKLQKI---------AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 543 VNGKYPNALSMLGD 556
P+A S G+
Sbjct: 459 SGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 3e-17
Identities = 64/492 (13%), Positives = 131/492 (26%), Gaps = 116/492 (23%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH------EFIFPYYGLGQVQLKL 310
K+ LA H KG E A + + I + H + + V +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 311 GDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLG--QIEKAQELLRKAAKI 360
G +KV + ++ E G ++ G Q E+A+ KA +
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGV----IHF 414
P++ + L D + A L++A P + + + +
Sbjct: 168 KPKNPEFTSGLAIASYRLD---NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224
Query: 415 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 474
E E + ++AL E +
Sbjct: 225 EGEEEGEGEKLVEEAL------------------------------------EKAPGVTD 248
Query: 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI----------- 523
VL + A+ + + A L + L + + ++
Sbjct: 249 -------VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301
Query: 524 --------AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA- 574
K + ++ + +A + N S+L L D + +A+ F+
Sbjct: 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 575 -SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 633
+ T L GN+ + ++ E +A H + ++
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQ-MKCEDKA----IHHFIEGVKIN--------QKSREK 408
Query: 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 693
L + + +SK+ + LA + A + +
Sbjct: 409 EKMKDKLQKIAKMRLSKN--------------GADSEALHVLAFLQELNEKMQQADEDSE 454
Query: 694 NCLRKFYYNTDA 705
L A
Sbjct: 455 RGLESGSLIPSA 466
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-11
Identities = 63/486 (12%), Positives = 126/486 (25%), Gaps = 92/486 (18%)
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361
L + + L DF + + L ++ GQ E A E LRKA ++
Sbjct: 23 NLMEGENSLDDFEDKVFY-RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 362 PRDAQAFIDLGELLISSDTGAA---LDAFKTARTLLKKAGEEVP----------IEVLNN 408
++ ++ L+ + + + + K E+
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 409 IG--VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 466
G + + E A F+ AL
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKAL------------------------------------ 165
Query: 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY----LRLAA 522
E + E + L + + A R + D L+L
Sbjct: 166 EKKPKNPEFTSGLAIASYRL----DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221
Query: 523 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 582
+ + +LV EAL+ + L + D+ KA E + A + +
Sbjct: 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NN 280
Query: 583 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT-------RVIVQHTSNLYAANG 635
+Y +G Y A + + K EL + + + +
Sbjct: 281 AYLHCQIGC-CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 636 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 695
+ A Q++ ++ F + V Q+ + + A+ +
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ-LYQMKCEDKAIHHFIEG 398
Query: 696 LR---KFYYNT-------------------DAQILLYLARTHYEAEQWQDCKKSLLRAIH 733
++ K D++ L LA E+ Q + R +
Sbjct: 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 734 LAPSNY 739
Sbjct: 459 SGSLIP 464
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 42/284 (14%), Positives = 81/284 (28%), Gaps = 36/284 (12%)
Query: 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 544
NL + D V YR + LA + + + ++E + +A ++
Sbjct: 23 NLMEGENSLDD-FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 545 ----------------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 588
G Y +G L K K S +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 589 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 648
G W K E+AK + + + + N +G + +
Sbjct: 142 EG-WTRL----------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 649 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTD 704
S++ +++A + + + LA K+ + L K TD
Sbjct: 191 SQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 705 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748
L A+ + ++ + L +A+ P+N L G
Sbjct: 249 V--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-28
Identities = 55/365 (15%), Positives = 113/365 (30%), Gaps = 57/365 (15%)
Query: 12 EQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 71
F+ L + E +E ++ + Y + TK E
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE---EQLDK 225
Query: 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 131
N+ ++ + G K + A K +E V + + A + +R
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRN 284
Query: 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191
++ ++ +AL++ + G + L +A + F +A +LDPEN+ +
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSV-YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343
Query: 192 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 251
LA + + N+ A +P
Sbjct: 344 LACLAYRENK---FDDCETLFSEAKRKFPEAPEV-------------------------- 374
Query: 252 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK-- 309
A K D++KA Y ++ E+ + Y G+ + K
Sbjct: 375 -----------PNFFAEILTDKNDFDKALKQYDLAI-ELEN--KLDGIYVGIAPLVGKAT 420
Query: 310 -------LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
+ +F A EK ++ P + + L + +Q I++A L ++A +
Sbjct: 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480
Query: 363 RDAQA 367
+
Sbjct: 481 TMEEK 485
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 7e-27
Identities = 50/448 (11%), Positives = 134/448 (29%), Gaps = 74/448 (16%)
Query: 46 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 105
V+Y+ L + ++ + KA + + + G+ A
Sbjct: 40 VFYSNLSACYVSVGDLKK----VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Query: 106 FK---IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--------- 153
+ + + ++ +L + + + + A
Sbjct: 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
Query: 154 ---IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG------ 204
+ + + + + + + D E + L L ++ + A
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215
Query: 205 ---IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 261
+ ++K ++ A++L + F + + A+ + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP----RVN 271
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
SY +A + D + Y+ ++ +++ YY GQ+ L ++ A +F+
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKAL-KLDS--NNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL------ 375
K E+ P+N L + + + + + L +A + P + E+L
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 376 -------------------------------ISSDTGAALDAFKTARTLLKKAGEEVP-- 402
++ F A LL+KA + P
Sbjct: 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448
Query: 403 IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
+ + + ++ + + A F+++
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 59/391 (15%), Positives = 130/391 (33%), Gaps = 42/391 (10%)
Query: 24 PEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP 83
+ ++ + ER A+ G I+T E L+TQ + + P
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE---LSTQPAKERKDKQENLP 159
Query: 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------QACVEFNR--G 131
S + E + + EAD++ + L +A F +
Sbjct: 160 SV--TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV- 190
+ + L+ ++ ++ G+ ++ A + ++A++L P V + +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISL-EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275
Query: 191 -ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 249
AL + D + +A ++ + + F + + + A
Sbjct: 276 MALIMADRNDSTEY-----YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 250 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 309
+ P Y LA + + ++ + + + P E ++
Sbjct: 331 KELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFP-EAPEVPNFFAEILTD 384
Query: 310 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ---------LGQIEKAQELLRKAAKI 360
DF AL ++ +E+ + + + + +A LL KA+K+
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 361 DPRDAQAFIDLGELLISS-DTGAALDAFKTA 390
DPR QA I L ++ + D A+ F+ +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-24
Identities = 75/506 (14%), Positives = 157/506 (31%), Gaps = 50/506 (9%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
+ + + + Y+ A YY ++ E+ + F Y L + +GD +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKEDPVF---YSNLSACYVSVGDLKKV 58
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELL 375
+ K LE+ PD + L LG+ A L + D DA L L
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 376 ISSDTGAALDAFKTARTLLKKAGEEVPIEVL-----------NNIGVIHFEKGEFESAHQ 424
+ F T E F + E
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 425 SFKDAL-GDGIWLTLLDSKTKTYVIDASASMLQF-KDMQLFHRFENDGNHV-ELPWNKVT 481
++ ++ D + L + K + F K +LF + N +L
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
L + +D + A + + + V++Y+ +A I RN+ ++AL
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAI-ELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601
K++ + G + ++ +A + F A + D ++ + + L E
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLAC-----LAYRE 351
Query: 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661
+ + + L++ + N +L +K FD + + E +
Sbjct: 352 NK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 662 GSVFVQMPDVWINLAHVY---------FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 712
++ +++ +A + NF A + + + Q + LA
Sbjct: 404 -----KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLA 456
Query: 713 RTHYEAEQWQDCKKSLLRAIHLAPSN 738
+ + E + + LA +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTM 482
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-23
Identities = 63/468 (13%), Positives = 133/468 (28%), Gaps = 44/468 (9%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
G + + A+ + LE+ D L YV +G ++K E+ KA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 360 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 418
+ P ++ + A+ IE + + +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS--IEPMLERNLNKQAMSK 125
Query: 419 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 478
+ A L+ +K + + S+ F F+ +
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA--SFFGIFKPELT------- 176
Query: 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 538
N E ++ L + + KA + ++ N
Sbjct: 177 ----FANYDESNEA-----DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 539 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 598
E K+ K +L G + +D + A E + A + +SY Y A +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY--------IYMALI 279
Query: 599 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 658
++ + + + + ++N G + +D + F + +E
Sbjct: 280 MADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 659 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 718
+ +I LA + + + F ++ RKF ++ + A +
Sbjct: 333 LDPEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDK 385
Query: 719 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 766
+ K AI L + + K + T T E
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 3e-21
Identities = 60/479 (12%), Positives = 139/479 (29%), Gaps = 73/479 (15%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
KG + + A + LE D V + + G +E +AL+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVALAVMDLQANEAAG 204
+ P + L LG+ A +L D + L E
Sbjct: 68 LKPDYSKVL-LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML--------ERNL 118
Query: 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 264
++ M K++ F L+ + + T++A S++
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA----------SFF 168
Query: 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEK 322
+ + + +Y+++ + ++ ++ Y F L +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 381
++ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDST 287
Query: 382 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441
+ F A LK V + G ++F ++ A + F A
Sbjct: 288 EYYNYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAK----------- 331
Query: 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 501
E D ++ + + + +
Sbjct: 332 -------------------------ELDPENIFPYIQLACLAYRENKFDDCETL------ 360
Query: 502 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 560
+ K+ + + A I +N+ +++ + A+++ K + L K
Sbjct: 361 -FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 5e-20
Identities = 75/503 (14%), Positives = 156/503 (31%), Gaps = 74/503 (14%)
Query: 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 174
AL + F +Y D++++Y AL++ + C +G L K +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEM 61
Query: 175 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------PYCAMAL 226
+AL+L P+ + L+ A +G+ K A A
Sbjct: 62 STKALELKPDYSKVLLRRAS----------ANEGLGKFADAMFDLSVLSLNGDFNDASIE 111
Query: 227 NYLANHFFFTGQHFLVEQLTETALAVTNHG-------------------PTKSHSYYNLA 267
L + L E+ + A T S++ +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Query: 268 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEKVLE 325
+ + +Y+++ + ++ ++ Y F L + +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231
Query: 326 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAAL 384
+ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYY 290
Query: 385 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 444
+ F A LK V + G ++F ++ A + F A L
Sbjct: 291 NYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKA------KELDPENIF 339
Query: 445 TYVIDASA--SMLQFKD-MQLFHR-FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 500
Y+ A +F D LF E+P +L + + +
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ----- 394
Query: 501 VLYRLILFKYQDYVDAYLRLAAI---------AKARNNLQLSIELVNEALKVNGKYPNAL 551
Y L + Y+ +A + N + L+ +A K++ + A
Sbjct: 395 --YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452
Query: 552 SMLGDLELKNDDWVKAKETFRAA 574
L ++L+ +D +A F +
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 4e-19
Identities = 57/586 (9%), Positives = 138/586 (23%), Gaps = 138/586 (23%)
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218
G ++ + A + + AL+L +
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKED---------------------------------- 38
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 278
+ + L+ + G V +++ AL + P S A + G +
Sbjct: 39 ----PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRRASANEGLGKFAD 91
Query: 279 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 338
A + I P + + + + + +
Sbjct: 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
Query: 339 HI-------------YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA--- 382
+ + + E ++ + D +L + S A
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211
Query: 383 ---ALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 437
A F+ + + L + G+ F K + AH+ K A+
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI------- 264
Query: 438 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 497
L + +Y+ ++ + E +
Sbjct: 265 ELFPRVNSYI------------------------------YMALIMADRNDSTEYYNY-- 292
Query: 498 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557
+ L + Y + N + + ++A +++ + L L
Sbjct: 293 -----FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347
Query: 558 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 617
+ + + + F A + L ++ +KA +
Sbjct: 348 AYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAE-----ILTDKND--------FDKALK 393
Query: 618 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--------- 668
Y I G ++ + + + EA +
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEA------TNLLEKASKLDP 446
Query: 669 --PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 712
I LA + Q + A+ +++ + + A
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 8/271 (2%)
Query: 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
L + + A Y L +D V Y L+A + +L+ +E+
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597
+AL++ Y L + A S D D+ L A
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 598 LRNEKRAPKLEATHLEKAKEL--YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 655
+ K T EL + + + + +++ + +
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182
Query: 656 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-----YYNTDAQILLY 710
EA + + A +F A ++++ L K A L +
Sbjct: 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242
Query: 711 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741
+ + + +AI L P +
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 6e-28
Identities = 69/683 (10%), Positives = 158/683 (23%), Gaps = 83/683 (12%)
Query: 58 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 117
R E A + ++D + +G + + ++ L V
Sbjct: 133 ARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192
Query: 118 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 177
A+ + L +A + P+ AI + L + + +
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAI-ASHDGGKQALETMQRLLPVLCQ 251
Query: 178 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237
A L P+ V A+ G ++ +E +QR +
Sbjct: 252 AHGLPPDQVVAI----------ASNIGGKQALETVQRLLPVL------------------ 283
Query: 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 297
A +T P + + + + ++ + + +
Sbjct: 284 ---------CQAHGLT---PDQVVAIASHGGGKQALETVQRLLPVL---CQAHGLTPDQV 328
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 357
+ L + L + + PD + + G L +++ +L +A
Sbjct: 329 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 388
Query: 358 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFE 415
+ P A G AL+ + +L +A P + + +
Sbjct: 389 HGLTPDQVVAIASNGGKQ-------ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQA 441
Query: 416 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 475
+ G L ++ QL L
Sbjct: 442 LETVQRLLPVLCQTHG------LTPAQVVAIASHDGGKQALETVQQLLPVLCQA---HGL 492
Query: 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 535
++V + + + + + D V A +A +Q +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 536 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 595
++ +A + A++ G + + + A A S
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTQVQVVAIASNIG---- 607
Query: 596 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 655
K +++ + + + + A + Q
Sbjct: 608 ---------GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658
Query: 656 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 715
+ A + + +
Sbjct: 659 AHGLTP-----DQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQEQVVAIASNNGGK 711
Query: 716 YEAEQWQDCKKSLLRAIHLAPSN 738
E Q L +A L P
Sbjct: 712 QALETVQRLLPVLCQAHGLTPDQ 734
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-22
Identities = 39/368 (10%), Positives = 96/368 (26%), Gaps = 22/368 (5%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
+ + + A V+Q D V A+ +
Sbjct: 448 LLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGK 507
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
L +A + P AI G + L + + +A L P+ V
Sbjct: 508 QALATVQRLLPVLCQAHGLTPDQVVAIA-SNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 188 ALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 245
A+ + L+ + + + +A + +A+ + +
Sbjct: 567 AIASNGGGKQALETVQRL-----LPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621
Query: 246 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 305
A +T P + + + + ++ + + + + G
Sbjct: 622 LCQAHGLT---PAQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT--PDQVVAIASNGG 675
Query: 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
+ L + L + + + + + L +++ +L +A + P
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV 735
Query: 366 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAH 423
A G AL+ + +L +A P + + + +
Sbjct: 736 VAIASNGGGK------QALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 424 QSFKDALG 431
G
Sbjct: 790 PVLCQDHG 797
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 1e-14
Identities = 41/454 (9%), Positives = 96/454 (21%), Gaps = 73/454 (16%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+ L + L + + P + + L +++ +L +A
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
+ P A AL+ + +L +A P + + + G
Sbjct: 255 LPPDQVVAIASNIGGK------QALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477
+ A L
Sbjct: 309 TVQRLLPVLCQAH-------------------------------------------GLTP 325
Query: 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
++V + + + + + D V A +A +Q + ++
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597
+A + A++ G +A ET + + A
Sbjct: 386 CQAHGLTPDQVVAIASNGG--------KQALETVQRLLPVLCQAHGLTP------DQVVA 431
Query: 598 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 657
+ + K +++ + + + + A + Q
Sbjct: 432 IASHDGG-KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH 490
Query: 658 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 717
+ + A + + +
Sbjct: 491 G-----LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQA 543
Query: 718 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
E Q L +A L P G Q
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 577
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-13
Identities = 43/363 (11%), Positives = 89/363 (24%), Gaps = 33/363 (9%)
Query: 63 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 122
E +A + + G A V++ ++ V A+
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182
+ L +A + P AI G + L + + +A L
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 765
Query: 183 PENVEAL-----------------------VALAVMDLQA-NEAAGIRKGMEKMQRAFEI 218
P V A+ L + + A G ++ +E +QR +
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKG 274
+ + L V P + + + +
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 334
++ ++ + + G Q L + L + + PD +
Sbjct: 886 TVQRLLPVL---CQDHGLTLDQVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAI 941
Query: 335 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 394
+ L +++ +L + + P A G A L A L
Sbjct: 942 ASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAAL 1001
Query: 395 KKA 397
Sbjct: 1002 TND 1004
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 24/322 (7%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
W+ + Q + V + + E + P + G ++ F + A+
Sbjct: 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL 93
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 203
P A + +G+ + + A A QR L+L P N++AL+ALAV + + A
Sbjct: 94 QDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 204 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---------N 254
E ++ + P + T + + V N
Sbjct: 153 -----CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Query: 255 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 314
L +H G++ +A + A++ +P E + LG
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRP-EDYSLWNRLGATLANGDRSE 264
Query: 315 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374
A+ + + LEI P + LG + LG +A A + +
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Query: 375 LISSDTGAALDAFKTARTLLKK 396
+ +G A + A +L+ +
Sbjct: 325 I----SGNIWAALRIALSLMDQ 342
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-20
Identities = 59/403 (14%), Positives = 120/403 (29%), Gaps = 66/403 (16%)
Query: 207 KGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAV----TNHGPTKSH 261
+ ++ E + +A + + Q + + T +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
+ +GD L+ A++ + P + LG Q + + ++A+ +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG-DAEAWQFLGITQAENENEQAAIVALQ 123
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS---- 377
+ LE+ P+N + L AL Y + A E L+ K +P+ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 378 SDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 433
S + + + L +A G+ + ++ +GV+ GEF A +F AL
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL--- 240
Query: 434 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQ 492
L WN++ L N R E
Sbjct: 241 ---------------------------------TVRPEDYSL-WNRLGATLANGDRSEEA 266
Query: 493 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 552
+ Y L ++ + L + ++ AL + K N
Sbjct: 267 VEA-------YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
Query: 553 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 595
+ + + W R A D + + +LG+ +
Sbjct: 320 VPHP-AISGNIW----AALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-17
Identities = 56/382 (14%), Positives = 109/382 (28%), Gaps = 60/382 (15%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
MQ E+ + + + E + + + + G K+ +
Sbjct: 22 MQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAF-EEGLKRLKEGD 80
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
+ A D + W G + A A + LE +N+ AL
Sbjct: 81 LPV----TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYK--------LGQLGKA 171
+ A N D+ E K ++ +P ++ + L
Sbjct: 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
Query: 172 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231
++ + A + + ++ DLQ + + RA + +
Sbjct: 197 KELYLEAAHQNGDMIDP-------DLQTGLGV-LFHLSGEFNRAIDAF------------ 236
Query: 232 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 291
AL V P + L + + E+A Y ++ EI
Sbjct: 237 ---------------NAALTVR---PEDYSLWNRLGATLANGDRSEEAVEAYTRAL-EI- 276
Query: 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG-----HIYVQLGQ 346
+P FI Y LG + LG +R A++NF L + + + +I+ L
Sbjct: 277 QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335
Query: 347 IEKAQELLRKAAKIDPRDAQAF 368
+ + D
Sbjct: 336 ALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 45/371 (12%), Positives = 101/371 (27%), Gaps = 47/371 (12%)
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
++ + + ++ + Y P + + G +LK GD +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYY---FHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 379
E + P + E + LG + + A L++ ++ P + +A + L
Sbjct: 88 MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT--- 144
Query: 380 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 437
+ A LK ++ P ++ N + G
Sbjct: 145 ---NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG------ 195
Query: 438 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 497
V + G+ ++ + L L +
Sbjct: 196 ---------VKELYLEAAHQN-----------GDMID-----PDLQTGLGVLFHLSGEFN 230
Query: 498 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557
A + L + + RL A + + ++E AL++ + + LG
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290
Query: 558 ELKNDDWVKAKETFRAA-----SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 612
+ + +A F A + + +S W + P+L
Sbjct: 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350
Query: 613 EKAKELYTRVI 623
++ R
Sbjct: 351 LGDLDVLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 32/355 (9%)
Query: 417 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVEL 475
EFE A + + W + + + + + ++ E H E
Sbjct: 3 MEFERAKAAVESDTE--FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 535
P+ F + D + + + +A+ L N Q +I
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 536 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 595
+ L++ AL L A E + + K Y +
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKG---- 175
Query: 596 AALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEKGQFDVSKD 651
+ +R K LE KELY Q+ + G GV+ G+F+ + D
Sbjct: 176 -SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 652 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTDA 705
F +W L A++ Y L + YN
Sbjct: 235 AFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--- 286
Query: 706 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 760
L + +++ + L A+ L + + A+ + L+
Sbjct: 287 -----LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 51/420 (12%), Positives = 95/420 (22%), Gaps = 94/420 (22%)
Query: 310 LGDFRSALTNFEKVLEIYPD--------NCETLKALGHIYVQLGQIEKAQELLRKAAKID 361
+F A E E + + + +++ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 362 PRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 418
+D + G + D + + A + P E +G+ E
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFM-------EAAILQDPGDAEAWQFLGITQAENEN 114
Query: 419 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 478
++A + + L E N+++
Sbjct: 115 EQAAIVALQRCL------------------------------------ELQPNNLK---- 134
Query: 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 538
L LA A + + + Y + S +
Sbjct: 135 ---ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 539 EALKVNGKYPNALSM------------LGDLELKNDDWVKAKETFRAASDATDGKDSYAT 586
V Y A LG L + ++ +A + F AA +D
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPEDYSLW 250
Query: 587 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 646
LG L N R E+A E YTR + + + G+ G +
Sbjct: 251 NRLGA-----TLANGDR--------SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 647 DVSKDLFTQV-------QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699
+ F + ++W L L L
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-26
Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 66/375 (17%)
Query: 41 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQLLL 94
L+A + LG T ++ S+ +G+ L
Sbjct: 9 LSASAENVSSLGLGSGGG---------GTNSHDGNSQQGSGSDGGSSMCLELALEGERLC 59
Query: 95 AKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRALQVHP 148
G+ + F+ ++A +++ L LG A F G Y+ +++++K L +
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAY--FYLGDYNKAMQYHKHDLTLAK 117
Query: 149 SCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE---------------NV-- 186
S A G +G +G+ +A +R L L + NV
Sbjct: 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177
Query: 187 ---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHFFFTG 237
+ L + + + +E Q ++ A L N ++ G
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237
Query: 238 QHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS---VKEIN 291
+ + L + + + NL S+ G +E A +Y + E+
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLG 345
+ Y LG L +F +A+ + L I +LG+ + +G
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357
Query: 346 QIEKAQELLRKAAKI 360
E+A + + ++
Sbjct: 358 GHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-26
Identities = 62/387 (16%), Positives = 119/387 (30%), Gaps = 74/387 (19%)
Query: 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 144
+ +G G + S + L + N G + F++ A+
Sbjct: 17 SSLGLGSGGGGTNSHDGNSQQGS-GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75
Query: 145 QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201
Q AI +G + LG KA Q + L
Sbjct: 76 QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------------- 114
Query: 202 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT----NHGP 257
+ ++ A + L N G+ E L + +
Sbjct: 115 ----------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-L 163
Query: 258 TKSHSYYNLARSYHSKGDY-----------------EKAGLYYMAS---VKEINKPHEFI 297
++ + YNL YH+KG + +A +Y + ++++
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 351
LG LGDF++A+ + ++ L I LG+ ++ LGQ E A
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 352 ELLRKAAKI------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI- 403
E ++ + +AQ+ LG + A++ + ++ G+ +
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343
Query: 404 EVLNNIGVIHFEKGEFESAHQSFKDAL 430
++G H G E A + + L
Sbjct: 344 RACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 15/190 (7%)
Query: 256 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGD 312
G S S S G + + + G+ GD
Sbjct: 4 GSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 313 FRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKI-----DPR 363
R+ + F+ ++ ++ LG+ Y LG KA + + + D
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123
Query: 364 D-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFE 420
A++ +LG L A + TL ++ G+ + L N+G ++ KG+
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183
Query: 421 SAHQSFKDAL 430
K
Sbjct: 184 GQRNPGKFGD 193
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 58/462 (12%), Positives = 121/462 (26%), Gaps = 129/462 (27%)
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLR 355
L LG + + + C L G G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 356 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 415
A + D + + + +G +F
Sbjct: 73 AAIQAGTEDLRT---------------------LSAIY-------------SQLGNAYFY 98
Query: 416 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 475
G++ A Q K LTL ++ + +
Sbjct: 99 LGDYNKAMQYHKHD------LTL---------------------------AKSMNDRLGE 125
Query: 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 535
NL L+ + A++ L + D + +A NL
Sbjct: 126 ----AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL----SEGRALYNLGN--- 174
Query: 536 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGN- 591
GK+ + + + +A E ++ + + + GN
Sbjct: 175 ----VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR-ACGNL 229
Query: 592 ---W----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEK 643
+ ++ AA+ + + L A+E R + SNL G
Sbjct: 230 GNTYYLLGDFQAAIEHHQER-------LRIAREFGDRAAERRANSNL------GNSHIFL 276
Query: 644 GQFDVSKDLFTQVQEAASGSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL- 696
GQF+ + + + + + ++ V++ + +L + Y F A++ + L
Sbjct: 277 GQFEDAAEHYKR-----TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 697 --RKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 735
++ A+ L H + K + + LA
Sbjct: 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 28/273 (10%)
Query: 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR---QAF 175
A F Y++++E + + + P +C Y+L + A+ + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETY 63
Query: 176 QRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 233
+ M + A +++ Q A + + ++F
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLA-----IQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 234 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 293
+ G L Q E + T T +Y L ++Y+ +Y KA ++ + E+
Sbjct: 119 YNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKVL-ELKP- 173
Query: 294 HEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKA--------LGHIYV 342
Y + A +EK++E+ K + + Y
Sbjct: 174 -NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 343 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
KA + +DP + +A L L
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 4e-22
Identities = 38/304 (12%), Positives = 76/304 (25%), Gaps = 44/304 (14%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
K E A + +NK + P + + + + A +
Sbjct: 6 EFRYADFLFKNNNYAE----AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 108 IVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164
+ + +G+ S +++ Y+ A+ + IG Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG-QIGSYFYN 120
Query: 165 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 222
G A Q ++ ++ + + L + A + E+ P
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA-----DSSFVKVLELKPNI 175
Query: 223 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 282
+ + A + LA K YEK +
Sbjct: 176 YIGYLWRARANAAQDPD----------------------TKQGLA-----KPYYEKL-IE 207
Query: 283 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 342
A K E I + D A ++ +L + P N + + L
Sbjct: 208 VCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 343 QLGQ 346
Sbjct: 267 HHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 5e-20
Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 22/215 (10%)
Query: 225 ALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAG 280
A+ F + A+ V N + Y A Y+ Y+ A
Sbjct: 5 VEFRYADFLFKNNNY-------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 281 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340
++N + G++ +K G A+ ++ ++ + +G
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE 400
+ G A + + K + D + F +LG+ + A + K E
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY------YYNKEYVKADSSFVKVLEL 171
Query: 401 VP--IEVLNNIGVIHFEKG---EFESAHQSFKDAL 430
P + + + A ++ +
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 65/291 (22%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ---ELLRK 356
+ K ++ A+ F K+ ++ Y +L + + AQ E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 357 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHF 414
+ F G++L A + A + +++ IG +
Sbjct: 66 KVNATKAKSADFEYYGKIL------MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 415 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 474
KG F A Q + + +
Sbjct: 120 NKGNFPLAIQYMEKQI------------------------------------RPTTTDPK 143
Query: 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL---Q 531
V + L + + V A + +L + YL A A++
Sbjct: 144 -------VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196
Query: 532 LSIELVNEALKV--------NGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
L+ + ++V + A + N D VKA ++
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 28/204 (13%), Positives = 56/204 (27%), Gaps = 19/204 (9%)
Query: 47 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 106
+ Y GKI K+ + A Q Y A D + G KG A
Sbjct: 76 DFEYYGKILMKKGQDSL----AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131
Query: 107 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 166
+ + + + Y + + + L++ P+ L
Sbjct: 132 EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY-LWRARANAAQD 190
Query: 167 QLGK---ARQAFQRALQLDPEN--------VEALVALAVMDLQANEAAGIRKGMEKMQRA 215
K A+ +++ +++ +EA +A + K +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD---KVKADAAWKNI 247
Query: 216 FEIYPYCAMALNYLANHFFFTGQH 239
+ P A++ L H
Sbjct: 248 LALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 23/228 (10%)
Query: 515 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
D R A NN +IE+ N+ P + + + A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 575 SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 633
+ + + ++ Y+ L + + A + Y + + T+ L
Sbjct: 64 FSKVNATKAKSA----DFEYYGKILMKKGQ--------DSLAIQQYQAAVDRDTTRLDMY 111
Query: 634 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 693
G KG F ++ + + P V+ L Y+ + A +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 694 NCLRKFYYNTDAQILLYLARTHYEAEQWQDC---KKSLLRAIHLAPSN 738
L L+ AR + + K + I +
Sbjct: 167 KVLELKPNIYIG--YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 31/324 (9%), Positives = 62/324 (19%), Gaps = 63/324 (19%)
Query: 330 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 388
N + + +A E+ K + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 389 TARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 446
T G I +KG+ A Q ++ A+
Sbjct: 62 T----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV---------------- 101
Query: 447 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 506
+ D ++ + + + A
Sbjct: 102 --------------------DRDTTRLD-------MYGQIGSYFYNKGNFPLAIQYMEKQ 134
Query: 507 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 566
+ + L + + L++ D K
Sbjct: 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Query: 567 ---AKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 621
AK + A G L N + KA +
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD--------KVKADAAWKN 246
Query: 622 VIVQHTSNLYAANGAGVVLAEKGQ 645
++ +N A +G + L
Sbjct: 247 ILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 31/282 (10%)
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI---ELVN 538
V F A L + ++ A ++ + K + Y R A L+ E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 539 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 598
+ G + +K A + ++AA D D +G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGS-----YF 118
Query: 599 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 658
N+ A + + I T++ G ++ + F +V E
Sbjct: 119 YNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 659 AASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLR------KFYYNTDAQILL 709
+ ++ A AQ LA Y+ + Y + +
Sbjct: 171 LKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 710 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
Y+A + + + L P+N + ++
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 16/247 (6%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
+ ++ +++E Y +A ++H Y+ G+ A A++ E
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 188 A--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 245
+++ + + + +++ E Y ++ + A+ +
Sbjct: 74 DYKVISKSFARIGNAYHK-----LGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKK 127
Query: 246 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 305
E V P K+ + Y +K D+ A Y +K P E Y
Sbjct: 128 AEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-P-EDARGYSNRAA 181
Query: 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
KL F A+ + K +E P+ + + + A E L A D
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 366 QAFIDLG 372
Sbjct: 242 NGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 24/268 (8%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
+G + ++A + E +D L +A E+ +G Y ++ A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQANEAAG 204
++ I ++G ++ ++ +++ A + L+ E
Sbjct: 67 QGREMRADYKV-ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE- 124
Query: 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKS 260
++K + + P A +F A+ P +
Sbjct: 125 ----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDW-------PNAVKAYTEMIKRAPEDA 173
Query: 261 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320
Y N A + + +A ++ E + F+ Y Q+ + ++ SAL
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDP--NFVRAYIRKATAQIAVKEYASALETL 230
Query: 321 EKVLEIYPDNCE--TLKALGHIYVQLGQ 346
+ + + + + +Y + Q
Sbjct: 231 DAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 56/302 (18%)
Query: 256 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 315
G + + ++ +++A +Y + E++K + + + G++ +
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITY---LNNRAAAEYEKGEYET 56
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
A++ +E + K + + ++G L+K + + ++L
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADIL 115
Query: 376 ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDG 433
L + + P E G +F K ++ +A +++ + +
Sbjct: 116 ------TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--- 166
Query: 434 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 493
+ N+ L L E I
Sbjct: 167 ---------------------------------KRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 494 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 553
D + K ++V AY+R A A ++E ++ A + + N S
Sbjct: 194 AD-------CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246
Query: 554 LG 555
Sbjct: 247 RE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 42/274 (15%), Positives = 77/274 (28%), Gaps = 53/274 (19%)
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218
G YK Q +A + + +A +L ++ L A + + A
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAA----------AEYEKGEYETAIST 60
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 278
A+ G Y +++S+ G+
Sbjct: 61 L---------------------------NDAVEQ---GREMRADYKVISKSFARIGNAYH 90
Query: 279 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 338
+++ K + + KL + L E + P+ E + G
Sbjct: 91 KLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 339 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 398
Y A + + K P DA+ + + L A L +F A KA
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL------AKLMSFPEAIADCNKAI 200
Query: 399 EEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
E+ P + E+ SA ++ A
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 28/214 (13%)
Query: 5 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK----IET 56
+++G+ + +E+G E+ Y +G Y LG IE
Sbjct: 48 EYEKGEYETAISTLNDAVEQG--REMRADY----KVISKSFARIGNAYHKLGDLKKTIEY 101
Query: 57 KQREKEEH-----------FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 105
Q+ EH + + ++ + +G+ K + A A
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 164
+ +++ ++ +A + +++ +A++ P+ A IR +
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT--AQIA 219
Query: 165 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198
+ + A + A D E A + L
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 26/275 (9%), Positives = 54/275 (19%), Gaps = 83/275 (30%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
G K F A+ ++ K E++ D L + G+ E A L A +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
+ I G
Sbjct: 67 QGREMRADY--------------------------------------KVISKSFARIGNA 88
Query: 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479
K + K+ T
Sbjct: 89 YHKLGDLKKTI-------EYYQKSLTE------------------------------HRT 111
Query: 480 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 539
+L L +++ + + + +++ +++ E
Sbjct: 112 ADILTKLRNAEKELKK-------AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164
Query: 540 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
+K + S K + +A A
Sbjct: 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 23/247 (9%), Positives = 59/247 (23%), Gaps = 34/247 (13%)
Query: 515 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
AA + + +I +N+A++ + ++ + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 575 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 634
+ + L + EK + + A
Sbjct: 99 IEYYQKSLTE-------HRTADILTKLRN--------AEKELKKAEAEAYVNPEKAEEAR 143
Query: 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 694
G K + + +T++ + A + N A +F A+
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 695 CLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748
+ + Y A +++ ++L A +
Sbjct: 199 AIEKDPNFVRAYIR--------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 749 MQKFSAS 755
+ AS
Sbjct: 251 QLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 34/323 (10%), Positives = 81/323 (25%), Gaps = 76/323 (23%)
Query: 404 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 463
+ G ++ +F+ A + + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW--------------------------------- 32
Query: 464 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 523
E + L N+ + I + + ++ Y ++
Sbjct: 33 ---ELHKDITYL-NNRAAAEYEKGEYETAIST-------LNDAVEQGREMRADYKVISKS 81
Query: 524 AKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDA 577
N + + + ++ K + L+ L + E K + A +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE-------KELKKAEAEA-Y 133
Query: 578 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 637
+ + + G + A + YT +I + + +
Sbjct: 134 VNPEKAEEARLEGK-----EYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 638 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 697
LA+ F + + E +I A A +A A++
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 698 KFYYNTDAQILLYLARTHYEAEQ 720
K + + + +Y+A Q
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 27/314 (8%)
Query: 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156
G + Q ++ + + + +++ ++ Q P A R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 214
+GL + + + G A A A LDP+++ ALAV + AA + ++
Sbjct: 61 -LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA-----LASLRA 114
Query: 215 AFEIYPYCAMALNYLAN--------HFFFTGQHFLVEQLTETALAVTNH----GPTKSHS 262
P + + F + + P +
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
+ +L Y+ +Y+ A +V+ +P + + LG + AL + +
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVE--LRP-DDAQLWNKLGATLANGNRPQEALDAYNR 231
Query: 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 382
L+I P + + Y + Q + A + L +A + + T +
Sbjct: 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA----TRS 287
Query: 383 ALDAFKTARTLLKK 396
D F+ ++ +
Sbjct: 288 MWDFFRMLLNVMNR 301
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-19
Identities = 33/357 (9%), Positives = 79/357 (22%), Gaps = 76/357 (21%)
Query: 42 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 101
G+ L + A + + W G +
Sbjct: 25 MEEGLSMLKLANLA-----------EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73
Query: 102 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------- 153
A A D ++ A N + +L + L P
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 154 ------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 207
+ + R AL+++P + + +L V +
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV----------LYN 183
Query: 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 267
A A+ + P + + L
Sbjct: 184 LSNNYDSAAANL---------------------------RRAVELR---PDDAQLWNKLG 213
Query: 268 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 327
+ + ++A Y ++ +IN P ++ Y + + + A + + +
Sbjct: 214 ATLANGNRPQEALDAYNRAL-DIN-P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 328 PDNCETLKALG-----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF---IDLGELLI 376
++ + ++ + F L +L+
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSMLL 327
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-19
Identities = 59/303 (19%), Positives = 99/303 (32%), Gaps = 39/303 (12%)
Query: 131 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 190
G + Y + GL KL L +A AF+ Q PE EA
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENP-MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59
Query: 191 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 250
+L + NE + + A + P LA AL
Sbjct: 60 SLGLT-QAENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAAL 109
Query: 251 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 310
A YE+ G + + +I+ +
Sbjct: 110 A-----------SLRAWLLSQP--QYEQLGSVNLQADVDIDDLN-----VQSEDFFFAAP 151
Query: 311 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ +
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 371 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 427
LG L + ALDA+ A + P + V+ N+ V + +++ A +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDIN-------PGYVRVMYNMAVSYSNMSQYDLAAKQLV 264
Query: 428 DAL 430
A+
Sbjct: 265 RAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 22/173 (12%)
Query: 25 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ--------YYNKAS 76
+D V AL V +T
Sbjct: 83 MLDPKDIAV-------HAALAVSHTNEHNAN----AALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 77 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 136
+ + A E + + LE + ++ + Y +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 137 LEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
+RA+++ P +LG L + +A A+ RAL ++P V
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATL--ANGNRPQEALDAYNRALDINPGYVRV 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 40/301 (13%), Positives = 85/301 (28%), Gaps = 27/301 (8%)
Query: 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 526
N + E P + + LA L E A++ + + + +A+ L
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAE-------AALAFEAVCQAAPEREEAWRSLGLTQAE 67
Query: 527 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 585
L+I +N A ++ K + L + A + RA + +
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 586 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 645
+ + + + + L + + ++ GV+
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187
Query: 646 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KF 699
+D + + E +W L A+ Y L +
Sbjct: 188 YDSAAANLRRAVELRP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Query: 700 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK 759
YN +A ++ Q+ K L+RAI++ T +A + +
Sbjct: 243 MYN--------MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294
Query: 760 T 760
Sbjct: 295 L 295
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 15/255 (5%)
Query: 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 174
+ V + + + A + +GL + G +A+
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDA-YIQLGLGYLQRGNTEQAKVP 59
Query: 175 FQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232
++AL++DP + +A ALAV + A E+ ++A A LN
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLA-----DEEYRKALASDSRNARVLNNYGGF 114
Query: 233 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 292
+ ++ Q A T + P +S + NL +A Y+ S+ +N+
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKSL-RLNR 172
Query: 293 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 352
+ + K ++ A ++ + N +L + + A
Sbjct: 173 --NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 353 LLRKAAKIDPRDAQA 367
+ ++ P +
Sbjct: 231 YGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 47/300 (15%), Positives = 85/300 (28%), Gaps = 53/300 (17%)
Query: 256 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 315
G + H +++ ++ +K E Y LG L+ G+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGDQN------PLKTDKGRDEARDAYIQLGLGYLQRGNTEQ 55
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
A K LEI P + + AL ++ + + A E RKA D R+A+ + G L
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115
Query: 376 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 434
A A + V N+G++ + + A + F+ +L
Sbjct: 116 YEQKRYEEAYQRLLEA---SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL---- 168
Query: 435 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 494
+ N V +A LL +
Sbjct: 169 --------------------------------RLNRNQPS-------VALEMADLLYKER 189
Query: 495 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554
+ V A Y L + L +AK + + + ++
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 19/237 (8%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
Q K + ++ G L +G EQA + LE D + A A V
Sbjct: 22 GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVF 81
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYKLGQLGKARQAFQRALQ--LDPE 184
+ E Y++AL + G L + + +A Q A Q L PE
Sbjct: 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY--EQKRYEEAYQRLLEASQDTLYPE 139
Query: 185 NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 244
L ++ LQ + A + E +++ + +A+ + ++ Q
Sbjct: 140 RSRVFENLGLVSLQMKKPA---QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 245 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
+ G + S R D + A Y + + ++P
Sbjct: 197 YYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--------LYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 9e-14
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 14/151 (9%)
Query: 40 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA--SRIDMHEPSTWVGKGQLLLAKG 97
+LN G + + E A Q +A + + G + L
Sbjct: 107 VLNNYGGFLYEQKRYEE-----------AYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155
Query: 98 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 157
+ QA F+ L +R+ L A + + Y + ++Y Q ++ LG
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
I L + A + +L P ++E
Sbjct: 216 IRLAK-VFEDRDTAASYGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 34/233 (14%)
Query: 5 YFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
Y ++G EQ R+ LE ID AD AL V + + +
Sbjct: 47 YLQRGNTEQAKVPLRKALE------IDPSSADA-------HAALAVVFQTEMEPK----- 88
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVP 118
LA + Y KA D G L + E+A + +
Sbjct: 89 ------LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSR 142
Query: 119 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 178
V + + + E+++++L+++ + P L + YK + ARQ +
Sbjct: 143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA-LEMADLLYKEREYVPARQYYDLF 201
Query: 179 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231
Q +N +L+ + + + +YP + A
Sbjct: 202 AQGGGQNARSLLLGIRLAKVFEDRDTAA---SYGLQLKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 8e-13
Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 93/322 (28%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
++ G V N K + + + LG Y+Q G E+A+ LRKA +
Sbjct: 9 HHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 419
IDP A A + V+ + E
Sbjct: 66 IDPSSADAH--------------------------------------AALAVVFQTEMEP 87
Query: 420 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 479
+ A + ++ AL +D +
Sbjct: 88 KLADEEYRKAL------------------------------------ASDSRNAR----- 106
Query: 480 VTVLFNLARLLEQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
VL N L + A Y + + L ++ + E
Sbjct: 107 --VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164
Query: 538 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 597
++L++N P+ + DL K ++V A++ + + G + +L LG
Sbjct: 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLG-IRLAKV 221
Query: 598 LRNEKRAPKLEATHLEKAKELY 619
+ A A++ + K LY
Sbjct: 222 FEDRDTA----ASYGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)
Query: 511 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 570
+ DAY++L R N + + + +AL+++ +A + L + + A E
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 571 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 630
+R A + A + NY L +KR E+A +
Sbjct: 94 YRKALAS---DSRNARV---LNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPE 139
Query: 631 YAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688
+ G+V + + +K+ F + P V + +A + + + + A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPA 194
Query: 689 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738
+ Y + N + LL R E L+ L P +
Sbjct: 195 RQYYDLFAQGGGQNARS--LLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 484 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 543
L Q +T A V R L DA+ LA + + +L+ E +AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 544 NGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEK 602
+ + L+ G + + +A + A+ D + S +LG K
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL-----VSLQMK 155
Query: 603 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 662
+ +AKE + + + + + A +L ++ ++ ++ + +
Sbjct: 156 K--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 663 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 709
+ + + + A R + + + Q
Sbjct: 208 N-----ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 99.9 bits (250), Expect = 1e-23
Identities = 47/281 (16%), Positives = 78/281 (27%), Gaps = 47/281 (16%)
Query: 95 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 154
+ +S +G+ G Y + E + +A++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG---SEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 155 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 214
+ + +L +A + +AL+LD A + E +
Sbjct: 61 -INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----------VYVVKEMYKE 109
Query: 215 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 274
A +++ E AL G +Y L
Sbjct: 110 AKDMF---------------------------EKALRA---GMENGDLFYMLGTVLVKLE 139
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 334
+ A Y +V E+N + G G AL+ F V E P + +
Sbjct: 140 QPKLALPYLQRAV-ELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 335 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
G Y EKA E+L KA I P A L
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 51/266 (19%), Positives = 84/266 (31%), Gaps = 49/266 (18%)
Query: 168 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMAL 226
+G + + L P + G K E +A E A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP- 59
Query: 227 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 286
Y N A S + E+A +Y +
Sbjct: 60 ------------------------------------YINFANLLSSVNELERALAFYDKA 83
Query: 287 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 346
+ E++ YYG G V + ++ A FEK L +N + LG + V+L Q
Sbjct: 84 L-ELDS--SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140
Query: 347 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IE 404
+ A L++A +++ D +A G L A A + E+ P +
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCL------ANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 405 VLNNIGVIHFEKGEFESAHQSFKDAL 430
N GV + K E A + A+
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAI 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 48/289 (16%), Positives = 96/289 (33%), Gaps = 51/289 (17%)
Query: 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 119
H ++ + S + +G+G G+ E+A+ AF +E ++++
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEF---GDYEKAAEAFTKAIEENKEDAIP 59
Query: 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179
+ A + + +L FY +AL++ S A G G +A+ F++AL
Sbjct: 60 YINFANLLSSVNELERALAFYDKALELDSSAATA-YYGAGNVYVVKEMYKEAKDMFEKAL 118
Query: 180 QLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237
+ EN + ++ L+ + A + +QRA E+ A
Sbjct: 119 RAGMENGDLFYMLGTVLVKLEQPKLA-----LPYLQRAVELNENDTEA------------ 161
Query: 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 297
+ ++G ++A + A E + P
Sbjct: 162 -------------------------RFQFGMCLANEGMLDEALSQFAAVT-EQD-P-GHA 193
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 346
+Y G + AL +K ++I PD+ L A +
Sbjct: 194 DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 12/194 (6%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
Y + + E E A +Y+KA +D + + G G + + K ++A F+
Sbjct: 60 YINFANLLSSVNELER----ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115
Query: 108 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167
L A +N V + +L + +RA++++ + A R G+C G
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA-RFQFGMCLANEGM 174
Query: 168 LGKARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225
L +A F + DP + +A + + E A +E + +A +I P +A
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-----LEMLDKAIDIQPDHMLA 229
Query: 226 LNYLANHFFFTGQH 239
L+ H
Sbjct: 230 LHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 9e-14
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 22/237 (9%)
Query: 42 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 101
+ G E A + + KA + + ++ LL + E+E+
Sbjct: 27 GQQMGRGSEFGDYEK-----------AAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 102 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161
A + + LE D A G V + Y ++ + +++AL+ +G
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF-YMLGTV 134
Query: 162 RYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIY 219
KL Q A QRA++L+ + EA + + + + A + + E
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA-----LSQFAAVTEQD 189
Query: 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 276
P A A + + ++ + A+ + P + + H +
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-09
Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 55/266 (20%)
Query: 315 SALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
S+ + + P T + G EKA E KA + + DA +I+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 371 LGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 428
LL ++++ + A KA E G ++ K ++ A F+
Sbjct: 63 FANLL------SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 429 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 488
AL + +L + TVL L +
Sbjct: 117 AL------------------------------------RAGMENGDLFYMLGTVLVKLEQ 140
Query: 489 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 548
+ + + ++ +A + L ++ + + +
Sbjct: 141 PKLALPY-------LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193
Query: 549 NALSMLGDLELKNDDWVKAKETFRAA 574
+A G ++ KA E A
Sbjct: 194 DAFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 39/335 (11%), Positives = 74/335 (22%), Gaps = 98/335 (29%)
Query: 311 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
+ + + + G EKA E KA + + DA +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY-- 60
Query: 371 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
N + E E A + AL
Sbjct: 61 ------------------------------------INFANLLSSVNELERALAFYDKAL 84
Query: 431 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 490
E D + + V
Sbjct: 85 ------------------------------------ELDSSAATAYYGAGNVYVVKEMYK 108
Query: 491 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 550
E + L + D + L + +L++ + A+++N A
Sbjct: 109 EAKDM-------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Query: 551 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 610
G +A F A + D + A + G ++
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVT-EQDPGHADAFYNAGV-----TYAYKEN------- 208
Query: 611 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 645
EKA E+ + I ++ A + ++
Sbjct: 209 -REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 22/227 (9%)
Query: 471 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 530
+ A + + + ++ Y+ A + + N L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 531 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 590
+ ++ ++AL+++ A G++ + + + +AK+ F A ++ LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMENGDLFYMLG 132
Query: 591 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 650
L ++ + A R + + ++ A G+ LA +G D +
Sbjct: 133 T-----VLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 651 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 697
F V E G D + N Y + N A++M +
Sbjct: 180 SQFAAVTEQDPGH-----ADAFYNAGVTYAYKENREKALEMLDKAID 221
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 591 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 650
EKA E +T+ I ++ + +L+ + + +
Sbjct: 22 ASMTGGQQMGRGSEFG----DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77
Query: 651 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTD 704
+ + E S + +VY + + A M++ LR +Y
Sbjct: 78 AFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-- 130
Query: 705 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
L + EQ + L RA+ L ++ RF G+ +
Sbjct: 131 ------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 1e-22
Identities = 56/323 (17%), Positives = 100/323 (30%), Gaps = 54/323 (16%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRA 143
G+ L G+ S F+ ++ +++ L LG A F Y+ +LE++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY--FYLHDYAKALEYHHHD 69
Query: 144 LQVHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE-------------- 184
L + + A G +G LG +A QR L + E
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 185 ---------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYL 229
+ + + ++ ++ + + A L
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189
Query: 230 ANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 286
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 287 ---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKAL 337
+++ Y LG L D+ A+ K L I +L
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 338 GHIYVQLGQIEKAQELLRKAAKI 360
G+ Y LG ++A K +I
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-22
Identities = 62/357 (17%), Positives = 104/357 (29%), Gaps = 78/357 (21%)
Query: 119 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQA 174
L + G + F++ A+QV + AI +G + L KA +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT-LSAIYSQLGNAYFYLHDYAKALEY 65
Query: 175 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234
L L G + G A A L N
Sbjct: 66 HHHDLTL------------------ARTIGDQLGE-------------AKASGNLGNTLK 94
Query: 235 FTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYHSKGD--------------- 275
G + L + + ++ + YNL YH+KG
Sbjct: 95 VLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153
Query: 276 -----YEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 327
+ A Y + V + + LG LG+FR A+ E+ L I
Sbjct: 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213
Query: 328 ------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELL 375
LG+ Y+ LG+ E A E +K + +AQ+ LG
Sbjct: 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273
Query: 376 IS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 430
D A+D + ++ + + ++G + G + A + L
Sbjct: 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 355
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 356 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 407
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127
Query: 408 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 440
N+G ++ KG+ L
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 4e-22
Identities = 59/382 (15%), Positives = 128/382 (33%), Gaps = 53/382 (13%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 145
G+ L G+ S F+ ++ +++ F Y+ +LE++ L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 146 VHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQL------DPENVEALVALAV 194
+ + A G +G LG +A QR L + AL L
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 195 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254
+ ++ G + + E+ A+++ E+ A+ +
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY-------------EENLSLVTALGD 182
Query: 255 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLG 311
+ ++ NL +++ G++ A + + + KE Y LG + LG
Sbjct: 183 R-AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241
Query: 312 DFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID---- 361
+F +A ++K L + ++ +LG+ Y L EKA + K I
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301
Query: 362 --PRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI--------EVLNNIG 410
+ +A LG + + A+ + + ++ G++ ++ +G
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361
Query: 411 VIHFEKGEFESAHQSFKDALGD 432
+ + S + +L
Sbjct: 362 LSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 9e-17
Identities = 48/246 (19%), Positives = 82/246 (33%), Gaps = 38/246 (15%)
Query: 223 AMALNYLANHFFFTGQHFLVEQLTETALAV-TNHGPTKSHSYYNLARSYHSKGDYEKAGL 281
+ L +G E A+ V T T S Y L +Y DY KA
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 282 YY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 332
Y+ + + I LG LG+F A+ ++ L+I
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 333 TLKALGHIYVQLGQI--------------------EKAQELLRKAAKID------PRDAQ 366
L LG++Y G+ + A + + + +
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 367 AFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQ 424
AF +LG + A+ A + + K+ G++ +N+G + GEFE+A +
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 425 SFKDAL 430
+K L
Sbjct: 249 YYKKTL 254
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 58/399 (14%), Positives = 112/399 (28%), Gaps = 88/399 (22%)
Query: 5 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 60
K G V F ++ + AI + LG Y YL
Sbjct: 19 LCKSGDCRAGVSFFEAAVQ---------VGTEDLKTLSAIYSQLGNAYFYLHDYAK---- 65
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
A +Y++ + + ++ +A +
Sbjct: 66 -------ALEYHHHD--LTLAR-----------TIGDQLGEAKA---------------S 90
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
G + +++ +R L + ++G Y LG + A+
Sbjct: 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKG------- 141
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHFF 234
++ V + ++ ++ + + A L N +
Sbjct: 142 ---KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY 198
Query: 235 FTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS---VK 288
G E L + + +Y NL +Y G++E A YY + +
Sbjct: 199 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258
Query: 289 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYV 342
++ Y LG L D+ A+ K L I +LG+ Y
Sbjct: 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318
Query: 343 QLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELL 375
LG ++A K +I + A ++L +L
Sbjct: 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 355
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 356 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 407
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 408 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 440
N+G ++ KG+ L
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELLIS-SDTGA 382
+C L G + G A ++ D + + LG D
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 383 ALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 430
AL+ TL + G+++ + N+G G F+ A + L
Sbjct: 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-21
Identities = 60/346 (17%), Positives = 123/346 (35%), Gaps = 46/346 (13%)
Query: 100 EQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155
+ S+ + + + +N P + G +++ ++ A+Q P A +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQ 213
+G + + Q A A +R L+L P+N AL+ALAV + A E ++
Sbjct: 103 Y-LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA-----CEILR 156
Query: 214 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 273
P A + GP+ + S S
Sbjct: 157 DWLRYTPAYAHLVTPAEE-----------------GAGGAGLGPS-----KRILGSLLSD 194
Query: 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 333
+ + ++A+V ++ GLG + G++ A+ F L + P++
Sbjct: 195 SLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA---ALDAFKTA 390
LG Q E+A R+A ++ P ++ +LG I + GA A++ F A
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI--NLGAHREAVEHFLEA 311
Query: 391 RTLLKKAGE------EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
+ +K+ + + + + + G+ ++ + L
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 6e-19
Identities = 49/327 (14%), Positives = 101/327 (30%), Gaps = 36/327 (11%)
Query: 67 LATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 122
L + Y+K + + + + +G L +G++ A F+ ++ D ++ A
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103
Query: 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182
+ + ++ +R L++ P A + + + +A + + L+
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTA-LMALAVSFTNESLQRQACEILRDWLRYT 162
Query: 183 PENVEALVALAVMDLQANEAAGIRKG------------MEKMQRAFEIYP--YCAMALNY 228
P + A R E A + P
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222
Query: 229 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 288
L F +G++ AL+V P + L + + E+A Y ++
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRAL- 278
Query: 289 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY------- 341
E+ P +I Y LG + LG R A+ +F + L + + G +
Sbjct: 279 ELQ-P-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336
Query: 342 ----VQLGQIEKAQELLRKAAKIDPRD 364
LGQ + +
Sbjct: 337 RLALSMLGQSDAYGAADARDLSTLLTM 363
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 56/374 (14%), Positives = 104/374 (27%), Gaps = 77/374 (20%)
Query: 263 YYNLARSYHSKGDYEKAGL--YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320
A ++ DY+ Y E P + G +L+ GD +A+ F
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 321 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 380
E ++ P + E + LG + Q A LR+ ++ P + A
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA------------- 134
Query: 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 440
L + V + A + +D L
Sbjct: 135 -------------------------LMALAVSFTNESLQRQACEILRDWL-------RYT 162
Query: 441 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP-WNKVTVLFNLARLLEQIHDTVAA 499
Y + + L G+ + + +V LF A + ++
Sbjct: 163 PA---YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA--VRLDPTSIDP 217
Query: 500 SVLYRL-ILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVNEA 540
V L +LF + + +L A N + ++ A
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----SDATDGKDSYATLSLGNWNYFA 596
L++ Y + LG + +A E F A + + +S W+
Sbjct: 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337
Query: 597 -ALRNEKRAPKLEA 609
AL ++ A
Sbjct: 338 LALSMLGQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 42/294 (14%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 467 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 526
EN P+ + L A +L+ + + +++A+ L
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 527 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 585
L+I + L++ AL L +A E R
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 586 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEK 643
G L + + KEL+ + +++ G GV+
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 644 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------ 697
G++D + D FT +W L A+ Y+ L
Sbjct: 231 GEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 698 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
+ YN L + ++ + L A+++ + R + G +
Sbjct: 286 RSRYN--------LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-21
Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 62/265 (23%)
Query: 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 144
+ K + G+ QA S F+ + + D +Y +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------------------YYWTNV 46
Query: 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 204
+ + + L K KA ++ LQ P NV+ L A A M + +
Sbjct: 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--- 103
Query: 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 264
+ + ++ ++ A
Sbjct: 104 EKDALRMYEKILQLEADNLAA-------------------------------------NI 126
Query: 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 324
L Y+ + EK L + + Y G +L + A + +KV+
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPT--KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 325 EIYPDNCETLKALGHIYVQLGQIEK 349
+P E K L I ++ +
Sbjct: 185 LRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 8e-21
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 26/186 (13%)
Query: 263 YYNLARSYHSKGDYEKA----------------GLYYMASVKEINKPHEFIFPYYGLGQV 306
+ G +A Y+ K + L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL---ATELALA 63
Query: 307 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
K ++ A ++++L+ P+N + L+A + V GQ + A + K +++ +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 367 AFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 424
A I LG + L+ + K G+ +E A
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----QYARYRDGLSKLFTTRYEKARN 178
Query: 425 SFKDAL 430
S + +
Sbjct: 179 SLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 9e-17
Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 19/204 (9%)
Query: 5 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV--YYTYLGKIETKQ 58
+ G+ V FRQ + ++ ++ Y N+ T L K
Sbjct: 14 AIEAGQNGQAVSYFRQTIA------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67
Query: 59 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 118
R ++ A +Y + + + ++ + +G+ + A ++ +L+ + DN+
Sbjct: 68 RNYDK----AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 119 ALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 177
A + + + LE + L A R GL + + KAR + Q+
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA-RYRDGLSKLFTTRYEKARNSLQK 182
Query: 178 ALQLDPENVEALVALAVMDLQANE 201
+ P + EA L + E
Sbjct: 183 VILRFP-STEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 28/212 (13%)
Query: 155 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 214
L + GQ G+A F++ + L+ + E
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY---------------------YWTN 45
Query: 215 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 274
+ + LA + + + L P A +G
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRG 102
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD-FRSALTNFEKVLEIYPDNCET 333
+ A Y + ++ + + LG + + L K L
Sbjct: 103 QEKDALRMYEKIL-QLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
G + + EKA+ L+K P
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 5e-15
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%)
Query: 71 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 130
Y+ + ++A +K +L+ +NV L A ++ R
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 131 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL-GKARQAFQRALQLDPENVEAL 189
G+ D+L Y++ LQ+ A + +G Y + K + + L + A
Sbjct: 102 GQEKDALRMYEKILQLEADNLAA-NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160
Query: 190 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 228
+ L K +Q+ +P
Sbjct: 161 YRDGLSKLFTTR---YEKARNSLQKVILRFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 6e-11
Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 66/244 (27%)
Query: 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 391
+ + ++ GQ +A R+ ++ + + S
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS-------------- 50
Query: 392 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 451
E+ ++ + + + + ++ A+ +K+ L
Sbjct: 51 --------EISSKLATELALAYKKNRNYDKAYLFYKELL--------------------- 81
Query: 452 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 511
+ N+V+ L A + A +Y IL
Sbjct: 82 ---------------QKAPNNVD-------CLEACAEMQVCRGQEKDALRMYEKILQLEA 119
Query: 512 DYVDAYLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 570
D + A + L + +E + L K A G +L + KA+ +
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179
Query: 571 FRAA 574
+
Sbjct: 180 LQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 40/228 (17%)
Query: 513 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 572
VD L+ + A ++ + + +N +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 573 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 632
D S L A + + +KA Y ++ + +N+
Sbjct: 44 TNVDKNSEISSKLATELAL-----AYKKNRN--------YDKAYLFYKELLQKAPNNVDC 90
Query: 633 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKM 691
+ +GQ + ++ ++ + + + I L + Y+ ++
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLET 145
Query: 692 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 739
L + +++ + SL + I PS
Sbjct: 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 502 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561
+ + + LA K N + E L+ + L ++++
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 621
A + + + A + LGN+ Y+ EK K E +
Sbjct: 102 GQEKDALRMYEKIL-QLEADNLAANIFLGNY-YYLTAEQEK-----------KKLETDYK 148
Query: 622 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 656
+ T YA G+ +++ +++ +V
Sbjct: 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 462
++ + E G+ A F+ + L ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-----------------------LNIDRTEM 40
Query: 463 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 522
++ D N + LA ++ + A + Y+ +L K + VD A
Sbjct: 41 YYWTNVDKNSEISS----KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 523 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGK 581
+ R + ++ + + L++ A LG+ L + K ET + K
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTK 155
Query: 582 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641
YA G + R EKA+ +VI++ S A +L
Sbjct: 156 MQYARYRDGL-----SKLFTTR--------YEKARNSLQKVILRFPST-EAQKTLDKILR 201
Query: 642 EKGQFD 647
+ + +
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 618 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 677
+T V + A + + +D + + ++ + A D A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAE 96
Query: 678 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAP 736
+ +G A++MY+ L+ N A ++L +Y AEQ + ++ + +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 737 SNYTLRFDAGVAMQK 751
R+ G++
Sbjct: 155 KMQYARYRDGLSKLF 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 3e-20
Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 16/253 (6%)
Query: 129 NRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184
+ L ++ L + G+ LG AR F +AL + P+
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLL-YERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 185 NVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 242
E L + +AA E E+ P A ++ G+ L
Sbjct: 76 MPEVFNYLGIYLTQAGNFDAA-----YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
Query: 243 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 302
+ P L + + + + K + + +
Sbjct: 131 QDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
LG + + + + ET LG Y+ LG ++ A L + A +
Sbjct: 188 LGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 363 RDAQAFIDLGELL 375
+ L
Sbjct: 247 HNFVEHRYALLEL 259
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 8/275 (2%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
L ++E Q + D +G L + G A + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 108 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167
L D G + + E + L++ P+ A L G+ Y G+
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGR 126
Query: 168 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227
A+ Q DP + + L + + + +E + +++ + +
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287
YL N ++ ++ S + + L + Y S GD + A + +V
Sbjct: 187 YLGN-ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
N H F+ + LG + L ++
Sbjct: 243 A--NNVHNFV-EHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 12/263 (4%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
L + + + D + L + + + G + + + +AL + P
Sbjct: 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRK 207
P +G+ + G A +AF L+LDP A + +A+ ++ A
Sbjct: 76 MPEV-FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA---- 130
Query: 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 267
+ + ++ P +L + E L + + + L
Sbjct: 131 -QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189
Query: 268 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 327
+ E+ + + + LG+ L LGD SA F+ +
Sbjct: 190 N-ISEQTLMERLKADATDNT-SLA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Query: 328 PDNCETLKALGHIYVQLGQIEKA 350
N + LGQ +
Sbjct: 246 VHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 9/176 (5%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
++ Y Y S G A + ++ I + + LG + G+F +A
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR--PDMPEVFNYLGIYLTQAGNFDAA 96
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376
F+ VLE+ P G G+ + AQ+ L + DP D + L
Sbjct: 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156
Query: 377 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
D A + K +K+ +E V +G I E+ E D
Sbjct: 157 KLDEKQAKEVLKQH---FEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNT 208
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 48/326 (14%), Positives = 87/326 (26%), Gaps = 69/326 (21%)
Query: 327 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 386
+ + L Q + + +++L A D AQ + G L +L
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLY------DSLGL 58
Query: 387 FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 444
AR +A P EV N +G+ + G F++A+++F L
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-------------- 104
Query: 445 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 504
E D + N+ L+ R D
Sbjct: 105 ----------------------ELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LL 135
Query: 505 LILFKYQDYVDAYLRLAAIAKARNNLQLSIEL---VNEALKVNGKYPNALSMLGDLELKN 561
+ L L + + Q L ++ K + LG++ +
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQ 194
Query: 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 621
+ K + S LG + L+ A L+
Sbjct: 195 TLMERLKADATDN-TSLAEHLSETNFYLGK-----YYLSLGD--------LDSATALFKL 240
Query: 622 VIVQHTSNLYAANGAGVVLAEKGQFD 647
+ + N A + L+ GQ
Sbjct: 241 AVANNVHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 28/270 (10%), Positives = 71/270 (26%), Gaps = 22/270 (8%)
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
L + + + + + + L+ ++AL
Sbjct: 14 PLQPTLQQEVILAR---MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601
+ P + LG + ++ A E F + D +YA L+ G AL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGI-----ALYYG 124
Query: 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661
R + A++ ++ + + + + + + L +++
Sbjct: 125 GR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 175
Query: 662 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 721
V L ++ Q + + ++ YL + +
Sbjct: 176 -KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDL 231
Query: 722 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
A+ N+ A + +
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSL 261
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-20
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 45/245 (18%)
Query: 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 211
I+ + + + +A + + AL+ DP+N A + A L+ N+ A E
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA-----QES 64
Query: 212 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 271
++A I P A N FL +L
Sbjct: 65 FRQALSIKPDSAEINNNYGW--------FLCGRL-------------------------- 90
Query: 272 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331
++ Y+ ++ + P G K G F A ++ L P
Sbjct: 91 --NRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147
Query: 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 391
K L + GQ+ A +K + LG I+ G A A++
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG-WKIAKALGNAQAAYEYEA 206
Query: 392 TLLKK 396
L
Sbjct: 207 QLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
L ++ D+R A + E L+ P N IY L +KAQE R+A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 360 IDPRDAQAFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 417
I P A+ + G L ++ F A L P N G+ ++G
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA---LADPTYPTPYIANLNKGICSAKQG 127
Query: 418 EFESAHQSFKDAL 430
+F A K +L
Sbjct: 128 QFGLAEAYLKRSL 140
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 8e-14
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 14/173 (8%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
LA Y DY +A ++K P + + ++ L A +F +
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKS--DP-KNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 323 VLEIYPDNCETLKALGHI-YVQLGQIEKAQELLRKAAK--IDPRDAQAFIDLGELLISSD 379
L I PD+ E G +L + ++ KA P A ++ G
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS---- 123
Query: 380 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
A F A LK++ P + G+ A FK
Sbjct: 124 --AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 31 ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 90
A+ + I L + Y AT A + D W+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYR-----------QATASIEDALKSDPKNELAWLVRA 49
Query: 91 QLLLAKGEVEQASSAFKIVLEADRDNVPAL--LGQACVEFNRGRYSDSLEFYKRALQVH- 147
++ ++A +F+ L D+ G R ++S+ ++ +AL
Sbjct: 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPT 108
Query: 148 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 206
P+ A L G+C K GQ G A +R+L P+ A LA + A + +
Sbjct: 109 YPTPYIA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ---LG 164
Query: 207 KGMEKMQRAFEIYPYCAMALNYLA 230
++ L
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 24/203 (11%)
Query: 4 EYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEE 63
EY + Q +E+ + + D Y YL +
Sbjct: 17 EYMRGQDYRQATASIED--ALKSDPKNELA-------WLVRAEIYQYLKVND-------- 59
Query: 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-GEVEQASSAFKIVLEAD--RDNVPAL 120
A + + +A I G L + ++ + F L A
Sbjct: 60 ---KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN 116
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
L + +G++ + + KR+L P P A + + GQLG A F++
Sbjct: 117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF-KELARTKMLAGQLGDADYYFKKYQS 175
Query: 181 LDPENVEALVALAVMDLQANEAA 203
+ L +A A
Sbjct: 176 RVEVLQADDLLLGWKIAKALGNA 198
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Query: 68 ATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 125
+ Y++KA + + KG +G+ A + K L A PA A
Sbjct: 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155
Query: 126 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185
+ G+ D+ ++K+ A L +G LG A+ A++ QL
Sbjct: 156 TKMLAGQLGDADYYFKKYQSRVEVLQ-ADDLLLGW--KIAKALGNAQAAYEYEAQLQANF 212
Query: 186 VEA 188
+
Sbjct: 213 PYS 215
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 20/203 (9%)
Query: 509 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 568
K + +LA + + + + +ALK + K A + ++ KA+
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 569 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 628
E+FR A + + + G L ++ + + + T
Sbjct: 63 ESFRQAL-SIKPDSAEINNNYGW-----FLCGRLN-------RPAESMAYFDKALADPTY 109
Query: 629 NLYAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 686
G+ A++GQF +++ + A Q P + LA G
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLG 164
Query: 687 LAMKMYQNCLRKFYYNTDAQILL 709
A ++ + +LL
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLL 187
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 32/269 (11%), Positives = 61/269 (22%), Gaps = 85/269 (31%)
Query: 325 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 384
E L Y++ +A + A K DP++ A+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW---------------- 45
Query: 385 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 444
I+ + A +SF+ AL
Sbjct: 46 ----------------------LVRAEIYQYLKVNDKAQESFRQAL-------------- 69
Query: 445 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLY 503
+ E + N L +++ + +
Sbjct: 70 ----------------------SIKPDSAE-------INNNYGWFLCGRLNRPAESMAYF 100
Query: 504 R--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561
L Y A L + + L+ + +L ++P A L ++
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160
Query: 562 DDWVKAKETFRAASDATDGKDSYATLSLG 590
A F+ + L LG
Sbjct: 161 GQLGDADYYFKKY-QSRVEVLQADDLLLG 188
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-18
Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 11/176 (6%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
+ Y + S+ G Y +A + + + + LG +K G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVY-DAD-A-FDVDVALHLGIAYVKTGAVDRG 61
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376
E+ L PDN + LG YVQ+ + + A LL K A+ +P + LG L
Sbjct: 62 TELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL- 120
Query: 377 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
L F A K A P +V I + + G E A FK A
Sbjct: 121 -----DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 43/210 (20%)
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217
G+ K G+ +A ++ D +V+ + L + + R E
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI----------AYVKTGAVDRGTE 63
Query: 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277
+ ++A P L +Y Y+
Sbjct: 64 LL-ERSLADA-----------------------------PDNVKVATVLGLTYVQVQKYD 93
Query: 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337
A + E N P + LG LG F A+ +F+ L + P+ + +A+
Sbjct: 94 LAVPLLIKVA-EAN-P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
Y Q+G+ E+A +KA ++D +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 14/187 (7%)
Query: 46 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 105
VYY G K + A + D + + G + G V++ +
Sbjct: 9 VYYRDKGISHAKAGRYSQ----AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 106 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 164
+ L DNV +Y ++ + + +P RLG+ L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL--DN 122
Query: 165 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 222
LG+ +A +F+ AL L P + A+A + +E A + ++A E+
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-----LPHFKKANELDEGA 177
Query: 223 AMALNYL 229
++ L +
Sbjct: 178 SVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 8e-10
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
+ KG G QA + V +AD +V L G E +R+L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 146 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEA 202
P LG+ ++ + A + + +P N L V +L +
Sbjct: 71 DAPDNVKVATVLGLTY--VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 203 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 239
A ++ + A + P +A + G+H
Sbjct: 129 A-----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 2e-18
Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 220 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 279
P A +LN LAN G +L AL V P + ++ NLA +G ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEA 62
Query: 280 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 339
++Y +++ P F Y +G ++ D + AL + + ++I P + L
Sbjct: 63 LMHYKEAIRI--SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 340 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAG 398
I+ G I +A R A K+ P A+ +L L D + K +++
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 399 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 429
E+ N + +H F+ A
Sbjct: 180 EK------NRLPSVHPHHSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 8/189 (4%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
L I+ +Q EE A + Y KA + + +L +G++++A +K
Sbjct: 12 LNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 108 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167
+ A +L+ Y RA+Q++P+ A + G
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-NLASIHKDSGN 126
Query: 168 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227
+ +A +++ AL+L P+ +A LA E+M++ I
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHC---LQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 228 YLANHFFFT 236
+ H +
Sbjct: 184 LPSVHPHHS 192
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 45/243 (18%)
Query: 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 174
+ +L A ++ +G +++ Y++AL+V P A + + G+L +A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-HSNLASVLQQQGKLQEALMH 65
Query: 175 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234
++ A+++ P +A + K M+ +Q A + Y A+ +N
Sbjct: 66 YKEAIRISPTFADAYSNMGN----------TLKEMQDVQGALQCY-TRAIQIN------- 107
Query: 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 294
P + ++ NLA + G+ +A Y ++K KP
Sbjct: 108 ----------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP- 142
Query: 295 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 354
+F Y L + D+ +K++ I D E L ++ +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGF 201
Query: 355 RKA 357
RKA
Sbjct: 202 RKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 3e-13
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 9/211 (4%)
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
P + ++L LA + + I + + ++A E++P A A + LA+ G+
Sbjct: 4 SCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 300
+ A+ ++ PT + +Y N+ + D + A Y ++ +IN F +
Sbjct: 61 EALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QIN--PAFADAH 114
Query: 301 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
L + G+ A+ ++ L++ PD + L H + E ++K I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 361 DPRDAQAFIDLGELLISSDTGAALDAFKTAR 391
+ S F+ A
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAI 205
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 2e-12
Identities = 33/268 (12%), Positives = 81/268 (30%), Gaps = 11/268 (4%)
Query: 35 YER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 93
Y + + + ++ L + +Q + +E A +Y +A RI + G L
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 94 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 153
+V+ A + ++ + A A + + G +++ Y+ AL++ P P A
Sbjct: 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 154 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 213
+ C + + ++ + + + +E +V + +
Sbjct: 148 -YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLS----HGFR 202
Query: 214 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 273
+A H ++ +H +L +S
Sbjct: 203 KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGM 262
Query: 274 GDYEK-AGLYYMASVKEINKPHEFIFPY 300
+ +K Y S + +
Sbjct: 263 HNPDKFEVFCYALSPDDGTNFRVKVMAE 290
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 3e-08
Identities = 60/454 (13%), Positives = 126/454 (27%), Gaps = 82/454 (18%)
Query: 512 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 571
+ D+ LA I + + N++ ++ L +AL+V ++ A S L
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--------------- 51
Query: 572 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 631
L+ + + L++A Y I +
Sbjct: 52 -------------------------VLQQQGK--------LQEALMHYKEAIRISPTFAD 78
Query: 632 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 691
A + G L E + +T+ + D NLA ++ GN A+
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINP-----AFADAHSNLASIHKDSGNIPEAIAS 133
Query: 692 YQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 750
Y+ L+ D LA W D + + + + + V
Sbjct: 134 YRTALK---LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH 190
Query: 751 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 810
L R A R + ++ + K++ ++
Sbjct: 191 HSMLYPLSHGFRKAIAER-------HGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 811 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 870
H + + + E Y L + + ++
Sbjct: 244 SSDFGNHPTSHLMQS--------------IPGMHNPDKFEVFCYALSPDDGTNFRVKVMA 289
Query: 871 QEEHFQRVKEQWRSSTPASKRRERSENDD-DEVGHSEKRRRKGGKRRKKDKSSRSHYETE 929
+ HF + + + A + + + + G+++ R + R +
Sbjct: 290 EANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPG 349
Query: 930 YAEADMMDYR---EEPEDEDASMNYREPIGQMND 960
+ A MDY +E + + Y E + M
Sbjct: 350 TSGALFMDYIITDQETSPAEVAEQYSEKLAYMPH 383
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 4e-08
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601
+++ + +A S +G+ + D A + + A + + A +L + ++
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLAS-----IHKDS 124
Query: 602 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 656
+ +A Y + A L + + ++
Sbjct: 125 GN--------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 54/239 (22%)
Query: 404 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 463
+ LNN+ I E+G E A + ++ AL
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--------------------------------- 36
Query: 464 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 523
E+ NLA +L+Q A + Y+ + + DAY +
Sbjct: 37 ----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 524 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKD 582
K ++Q +++ A+++N + +A S L + + + +A ++R A D D
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 583 SYATLS-----LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 636
+Y L+ + +W + KL + ++ ++ + H S LY +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMK-----KLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 4e-18
Identities = 47/324 (14%), Positives = 94/324 (29%), Gaps = 44/324 (13%)
Query: 91 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPS 149
+ + E+E+ + VL + + AL+ + YS +A+++ P
Sbjct: 76 KQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE 135
Query: 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV------MDLQANEAA 203
A +G +K G + A F AL N +L L++ D +
Sbjct: 136 LVEA-WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSR 193
Query: 204 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 263
+ + + + A ++ + L N + +
Sbjct: 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP------------------- 234
Query: 264 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 323
++A Y + K K + + + AL F +
Sbjct: 235 ----------KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
Query: 324 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 383
+ P E + + L + LL K P+ Q+ + L + G
Sbjct: 285 AALDPAWPEPQQREQQLLEFLS---RLTSLLESKGKTKPKKLQSML---GSLRPAHLGPC 338
Query: 384 LDAFKTARTLLKKAGEEVPIEVLN 407
D + + K E P+ L
Sbjct: 339 GDGRYQSASGQKMTLELKPLSTLQ 362
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 4e-15
Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 19/190 (10%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
++ + ++ + DY ++ ++ + LG+V K GD SA
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSA 156
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKAAKIDPRDAQA 367
T F L + +L+ L + QL + + + A ++D D ++
Sbjct: 157 HTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 368 FIDLGELLIS--SDTGAALDAFKTARTLLKKAGEEVPI-----EVLNNIGVIHFEKGEFE 420
+ LG +S +TG + A + +A + ++ N +H + +
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 421 SAHQSFKDAL 430
A + F A
Sbjct: 276 EALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 58/377 (15%), Positives = 118/377 (31%), Gaps = 37/377 (9%)
Query: 260 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
SH +++ + +G + MAS+ + + + L + +
Sbjct: 4 SHHHHHHSSGLVPRGSH-------MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDR 56
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 379
+ Y + A ++EK + + + +AQA + G+ L
Sbjct: 57 LYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL---- 112
Query: 380 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGD----- 432
D A LL KA + P +E N +G ++++KG+ SAH F AL
Sbjct: 113 -NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171
Query: 433 -----GIWLTLL-DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-----VT 481
+ L L + S+ Q K + D W ++
Sbjct: 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK-----LAVQMDVLDGR-SWYILGNAYLS 225
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
+ FN + + ++A + K D +L A + K + ++E ++A
Sbjct: 226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 601
++ +P L E+ + +L + R +
Sbjct: 286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAHLGPCGDGRYQ 344
Query: 602 KRAPKLEATHLEKAKEL 618
+ + L+ L
Sbjct: 345 SASGQKMTLELKPLSTL 361
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 46/303 (15%), Positives = 93/303 (30%), Gaps = 41/303 (13%)
Query: 5 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAILNALGVYYTYLGKIETKQREKEE 63
YF+ VE + ++ E+++ + E + GK +
Sbjct: 64 YFETHSVEDAGRKQQD-VQEEMEK--TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP 120
Query: 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-------- 115
A +KA +++ W G++ KG+V A + F L ++
Sbjct: 121 E---AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLS 177
Query: 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCR------YKLGQL 168
V L + + DS+ K A+Q+ + LG
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237
Query: 169 GKARQAFQRALQLD---PENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCA 223
+A A+ +A ++D N + + A + ++ A +E +A + P
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEA-----LEGFSQAAALDPAWP 292
Query: 224 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 283
L+E L+ + + G TK ++ S Y
Sbjct: 293 EPQQREQQ---------LLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRY 343
Query: 284 MAS 286
++
Sbjct: 344 QSA 346
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)
Query: 503 YRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNALSMLGDLELKN 561
+L Q A + + + L+++A+K+ + A + LG++ K
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYT 620
D A F A K+ + +L LR + E + + +
Sbjct: 151 GDVTSAHTCFSGALT--HCKNKVSLQNLSM-----VLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 621 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--------ASGSVFVQMPDVW 672
+ + + G + + Q+A PD+
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 673 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 709
+N A ++ + ++ A++ + + Q
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 593 NYFAALRNEKRAPKLEAT--HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS- 649
+YF E K + +EK + V+ A G L +
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 650 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-----KFYYNTD 704
+ L ++ + + W L VY+ +G+ A + L N
Sbjct: 123 EVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL- 176
Query: 705 AQILLYLARTHYE--AEQWQDCKKSLLRAIHLAPSNY 739
+ +L L + + D + A+ + +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-18
Identities = 46/332 (13%), Positives = 115/332 (34%), Gaps = 27/332 (8%)
Query: 53 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 112
++E ++ EE L Y R + ++ G+ + V + + +
Sbjct: 37 EVEQDIQQMEEDQDLLIYYSLMCFRHQLM--LDYLEPGKTYGNRPTVTELLETIETPQKK 94
Query: 113 DRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----IGLCRYKL 165
+ L + EF++ Y +++ +Y+ A + P I + Y +
Sbjct: 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154
Query: 166 GQLGKARQAFQRALQLDPENV--EALVALAVMDLQAN--EAAGIRKGMEKMQRAFEIY-- 219
Q + +AL + + ++ + N + K + ++ A E+
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214
Query: 220 ----PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSK 273
+ A++L +AN + +G + + + A V+ + L+ +
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 274 GDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYP 328
G +KA + + + +K ++ +F + + + + L+ FEK ++
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHA 333
Query: 329 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
++ ++ E+A RK K
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 34/253 (13%), Positives = 86/253 (33%), Gaps = 22/253 (8%)
Query: 200 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 259
E + ME+ Q Y + ++ + +TE +
Sbjct: 36 AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95
Query: 260 SH-----SYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLG 311
+ S + + +Y +A YY + + ++ E ++ + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 312 DFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 360
++ + + L+IY ++L + Y +KA L A ++
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 361 --DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 417
D A + +++ D A++ F+ A + ++ ++ +VL + + G
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 418 EFESAHQSFKDAL 430
+ + A Q ++ L
Sbjct: 276 QTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 45/361 (12%), Positives = 86/361 (23%), Gaps = 68/361 (18%)
Query: 1 MQREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG-------- 52
+ +Y + GK R + E + L G+Y
Sbjct: 64 LMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY 123
Query: 53 --KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 110
+ E + + A ++ A + Q ++ + QA ++
Sbjct: 124 YREAEKELPFVSDDIEKAEFHFKVAE--------AYYHMKQTHVSMYHILQALDIYQNHP 175
Query: 111 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GAIRLGIGLCRYKL 165
+ +L A + Y +L + AL++ L I +
Sbjct: 176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235
Query: 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225
G A + FQ+A ++ E +
Sbjct: 236 GDDQMAVEHFQKAAKVSREK--------------------------------VPDLLPKV 263
Query: 226 LNYLANHFFFTGQHFLVEQLTETALAVTN-----HGPTKSHSYYNLARSYHSKGDYEKAG 280
L L+ GQ Q E L + + +
Sbjct: 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323
Query: 281 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 340
Y+ ++ N V F A + KVL+ E + +
Sbjct: 324 SYF----EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ----EDILKGECL 375
Query: 341 Y 341
Y
Sbjct: 376 Y 376
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 24/262 (9%)
Query: 488 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 547
+ ++Q+ + + Y L+ F++Q +D YL R + +E + K
Sbjct: 40 QDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 548 PNALS--MLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNEK 602
S G E ++V+A +R A A A
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHM 154
Query: 603 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 662
+ + H+ +A ++Y + + + + +D + E
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE---- 210
Query: 663 SVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQILLYLAR 713
+ + + + +N+A+ Y G+ +A++ +Q R+ + ++L L+
Sbjct: 211 -LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 714 THYEAEQWQDCKKSLLRAIHLA 735
T +A Q Q + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHI 291
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 5e-18
Identities = 33/240 (13%), Positives = 75/240 (31%), Gaps = 22/240 (9%)
Query: 210 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYN 265
E + A ++ +++ Q + A + +
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 266 LARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
A ++ YE A ++ + + +P Y +G + + A+ F++
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 323 VLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFIDL 371
+ ++ P + + I+ +LG+I+KA E K D F L
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 372 GELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 430
L +S +A + L+ + + ++ + E+ F+ A F
Sbjct: 310 KSLYLSGP---DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 45/345 (13%), Positives = 106/345 (30%), Gaps = 44/345 (12%)
Query: 50 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 109
+I+ + + EE L Y R ++ L + E + S +
Sbjct: 34 LRREIKQELDQMEEDQDLHLYYSLMEFRHNL----MLEYLEPLEKMRIEEQPRLSDLLLE 89
Query: 110 LEADRDNVPALL------GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----I 158
++ + + LL + E ++ Y +++F+K+A I +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216
Y + Q + ++A ++ E + A +++ + A
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF-----ATNFLDLKQYEDAI 204
Query: 217 EIY-------------PYCAMALNYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKS 260
+ L + Q+ + A+A +N P+
Sbjct: 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264
Query: 261 HSYYNLARSYHSKGDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRS 315
+Y+ + + ++ G +KA Y+ MA ++ + + F + L +
Sbjct: 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
E +Y D + + Y + +KA K ++
Sbjct: 325 FFDFLES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 21/231 (9%)
Query: 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN---LARSYHSKGDYE 277
+ L YL + + T YY + +Y
Sbjct: 61 RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYL 120
Query: 278 KAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 327
A ++ + + + E ++ + + + ++ + EIY
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLIS-SDT 380
+ ++ L Q E A +KA + + ++G S S
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240
Query: 381 GAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 430
A+ FK A + +++ + + I IH++ G+ + AH+ +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 49/321 (15%), Positives = 95/321 (29%), Gaps = 56/321 (17%)
Query: 28 EYYADVRYERIAILNALGVYYTYL--GKIETKQREKEEHFILATQYYNKASRIDMHEP-- 83
++ A L L YY G E QRE A +++ KA +
Sbjct: 84 SDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS----AIKFFKKAESKLIFVKDR 139
Query: 84 -----------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 132
++ Q + QA +K + + A + +
Sbjct: 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199
Query: 133 YSDSLEFYKRALQV-----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
Y D++ +++A + P G IGLC+ Q A F+RA+ + E+
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES-- 257
Query: 188 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 247
I P A + + G+ +
Sbjct: 258 -----------------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288
Query: 248 TALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 306
+A + G S + +S + G E+A + ++ + + +
Sbjct: 289 KGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348
Query: 307 QLKLGDFRSALTNFEKVLEIY 327
+ +F+ A F KV ++
Sbjct: 349 YHERKNFQKASAYFLKVEQVR 369
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 30/268 (11%), Positives = 81/268 (30%), Gaps = 27/268 (10%)
Query: 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEA 540
+ + L+Q+ + + Y L+ F++ ++ ++L L I+
Sbjct: 37 EIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQAR 96
Query: 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAA 597
L +Y G EL +++ A + F+ A + A + +
Sbjct: 97 LTGLLEYYFNFFR-GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEF----FFKMSE 151
Query: 598 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 657
+ + +A E+Y + L + + Q++ + F +
Sbjct: 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211
Query: 658 EAASGSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQI 707
+ N+ +Q + A+ ++ + F + Q
Sbjct: 212 S-----MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266
Query: 708 LLYLARTHYEAEQWQDCKKSLLRAIHLA 735
+ + HY+ + + + + +
Sbjct: 267 YFLITQIHYKLGKIDKAHEYHSKGMAYS 294
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 36/236 (15%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
+ GRY +L ++RAL+ +P P A + + KLG + A + + + P +
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEA-LYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Query: 188 ALVALAVM-DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 246
+ L+ +A +G +++A +
Sbjct: 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVL--------------------------- 107
Query: 247 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 306
+ A V P + + Y G+ +KA ++ + E L ++
Sbjct: 108 KDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQAL-ALEDTPE---IRSALAEL 160
Query: 307 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
L +G AL + K LE P + + + G+ E+A
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-16
Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 25/182 (13%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
L ++ G Y+ A + ++KE P + Y L + QLKLG AL N +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKE--NP-QDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 323 VLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDL 371
++ P L YV L G +E+A +L+ A +++PR A +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 372 GELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 428
G + + G A + K A L E+ + + ++ G + A +
Sbjct: 125 GLVY--ALLGERDKAEASLKQALALEDTP------EIRSALAELYLSMGRLDEALAQYAK 176
Query: 429 AL 430
AL
Sbjct: 177 AL 178
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 23/181 (12%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL-----------G 311
Y LAR+ G A V P ++ Y L + + L G
Sbjct: 42 LYWLARTQLKLGLVNPALENGKTLV-ART-PR-YLGGYMVLSEAYVALYRQAEDRERGKG 98
Query: 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371
AL+ + + P G +Y LG+ +KA+ L++A ++ + L
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSAL 157
Query: 372 GELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDA 429
EL ++ A KA E+ P +++ KG+ E A ++
Sbjct: 158 AELY------LSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211
Query: 430 L 430
Sbjct: 212 H 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 2/142 (1%)
Query: 42 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 101
L Y L + + + + A A R++ + +G + GE ++
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 102 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161
A ++ K L + D A + + GR ++L Y +AL+ P R+
Sbjct: 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL-RVRYASA 194
Query: 162 RYKLGQLGKARQAFQRALQLDP 183
G+ +A +A
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 31/211 (14%)
Query: 42 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 101
LGV LG+ + A + +A + + +P + L G V
Sbjct: 9 LRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 102 ASSAFKIVLEADRDNVPAL--LGQA---------CVEFNRGRYSDSLEFYKRALQVHPSC 150
A K ++ + L +A E +G +L K A +V+P
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Query: 151 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKG 208
L GL LG+ KA + ++AL L+ E ALA + + + A
Sbjct: 118 APL-HLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA----- 170
Query: 209 MEKMQRAFEIYPYCAMALNYLANHFFFTGQH 239
+ + +A E P A+ G+
Sbjct: 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKA 201
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 23/232 (9%)
Query: 511 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 570
Q LRL A ++ L ALK N + P AL L +LK A E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 571 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 630
+ A + + L + AL + + +LE+A + +
Sbjct: 62 GKTLV-ARTPRYLGGYMVLS--EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 631 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 690
G+V A G+ D ++ Q P++ LA +Y + G A+
Sbjct: 119 PLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLSMGRLDEALA 172
Query: 691 MYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736
Y L A + ++ ++ H
Sbjct: 173 QYAKALEQAPKDLDLRVR--------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
A R + W+ L G+ A + L + A+ V
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
+ + R++++ ++A P PG +G GQ A A+ RA QL PE
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALW-LGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 188 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 230
L + + + +++ A +L+
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 8e-15
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 8/173 (4%)
Query: 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156
+ + + + + A L A E G + +R L +HP P A+
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA- 61
Query: 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 214
+G R+ + +A Q+A PE+ + L D EAA R
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA-----AAAYTR 116
Query: 215 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 267
A ++ P L N ++ L+ A G + L+
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 6/140 (4%)
Query: 236 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 295
T A+ P ++ LA + GD + + P
Sbjct: 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HP-G 55
Query: 296 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 355
LG+V+ A ++ + P++ LGH GQ E A
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 356 KAAKIDPRDAQAFIDLGELL 375
+A ++ P + L
Sbjct: 116 RAHQLLPEEPYITAQLLNWR 135
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 333
D + L A+V+ +P + L +L +GD + ++ L ++P + E
Sbjct: 3 ADGPRELLQLRAAVRH--RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTART 392
+ LG + + +A LL++A+ P + LG L + AA A+ A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 393 L 393
L
Sbjct: 120 L 120
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 43/202 (21%)
Query: 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225
+ + A++ P++ A + LA +L + G +QR ++P A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT---AGEMAVQRGLALHPGHPEA 59
Query: 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285
+ L + +H L + A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDA--------------------------------- 86
Query: 286 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 345
P E LG G +A + + ++ P+ L + +L
Sbjct: 87 ------AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Query: 346 QIEKAQELLRKAAKIDPRDAQA 367
L + + A
Sbjct: 140 DWRALDVLSAQVRAAVAQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 16/93 (17%), Positives = 30/93 (32%)
Query: 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 541
LA + DT A + + L + + +A RL + + + L+ +A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 542 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
++P LG A + A
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 18/211 (8%), Positives = 39/211 (18%), Gaps = 81/211 (38%)
Query: 311 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
D L + P + L + +G + +++ + P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA--- 59
Query: 371 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
+ +G + + + A + A
Sbjct: 60 -----------------------------------VARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 431 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 490
+ H + L L
Sbjct: 85 ------------------------------------DAAPEHPG-------IALWLGHAL 101
Query: 491 EQIHDTVAASVLYRLILFKYQDYVDAYLRLA 521
E AA+ Y + +L
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 16/201 (7%)
Query: 669 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 728
W+ LA G+ Q L + + + L R + ++ + L
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 729 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 788
+A AP + + G A L+ + A A ++ +
Sbjct: 81 QQASDAAPEHPGIALWLGHA--------LEDAGQAEA----AAAAYTRAHQLLPEEPYIT 128
Query: 789 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 848
L+ ++ + AA A + AA Q A A +
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAI 188
Query: 849 EEQKKYLLEKRKLEDEQKRLR 869
+ L R + LR
Sbjct: 189 AASVRPLAPTRV--RSKGPLR 207
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 19/171 (11%)
Query: 563 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 622
D + RAA +D A L L + A + R
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWLMLAD-----AELGMGD--------TTAGEMAVQRG 49
Query: 623 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 682
+ H + A G V + + + L Q +AA P + + L H
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----PGIALWLGHALEDA 104
Query: 683 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 733
G A Y + L R + D + +RA
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 495 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 554
D + R + A+L LA + V L ++ +P A++ L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 555 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 614
G + +A + ASDA + L LG+ AL + + E
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGH-----ALEDAGQ--------AEA 109
Query: 615 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 661
A YTR Y + L QV+ A +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 23/233 (9%), Positives = 46/233 (19%), Gaps = 81/233 (34%)
Query: 345 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE 404
+ LR A + P+D A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVA------------------------------------- 25
Query: 405 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 464
+ G+ + + + L
Sbjct: 26 -WLMLADAELGMGDTTAGEMAVQRGL---------------------------------- 50
Query: 465 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 524
H E + L R+ A+VL + ++ L L
Sbjct: 51 --ALHPGHPE-------AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101
Query: 525 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 577
+ + + A ++ + P + L + + DW A
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 9e-17
Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 18/181 (9%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 313
T S + + L Y +++A + A ++ + +G V+ G++
Sbjct: 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 314 RSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----D 361
+A F + E+ + + + G + A++ K+ D
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 362 PRD-AQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGE 418
A AF LG+L + A + AR + + + + E++ + +
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Query: 419 F 419
Sbjct: 203 H 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 49/230 (21%)
Query: 135 DSLEFYKRALQV-----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 189
++ ++ Q HP+ R +G + + +AR +FQ Q
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------- 55
Query: 190 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 249
+ +G AL+ + G +
Sbjct: 56 ----------AQKSGDHTAE-------------HRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 250 LAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYG 302
+ S + Y +A GD A Y S+ ++ + + G
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQ 346
LG + + + A ++ + +I+ E + L +
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 316 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRD 364
A + LG++Y + + ++A+ + + D
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 365 -AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFE 420
+A +G + + AA F R LL E+ + + G+
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 421 SAHQSFKDAL 430
A Q ++ +L
Sbjct: 125 GARQEYEKSL 134
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 21/224 (9%), Positives = 51/224 (22%), Gaps = 41/224 (18%)
Query: 101 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-----HPSCPGAIR 155
A + +L A V R+ ++ ++ Q +
Sbjct: 10 LAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69
Query: 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 215
+G+ G AR+ F +L +
Sbjct: 70 HQVGMVERMAGNWDAARRCFLEEREL------------------LASLPEDPLAA----- 106
Query: 216 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHS 272
+ +A G Q E +L + + ++ L
Sbjct: 107 -------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159
Query: 273 KGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 313
+ + +A +++ + E+ L ++
Sbjct: 160 EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 29/161 (18%)
Query: 39 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 92
LG Y ++ + + A + + E G +
Sbjct: 27 GARFMLGYVYAFMDRFDE-----------ARASFQALQQQAQKSGDHTAEHRALHQVGMV 75
Query: 93 LLAKGEVEQASSAFKIVLEADR---DNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 145
G + A F E ++ A V + G + + + Y+++L
Sbjct: 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Query: 146 VH-----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
G+G + L +A+Q + RA +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-15
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 1/122 (0%)
Query: 72 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 131
+ G G+ + A F+ + D + LG + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 132 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191
Y +L+ Y + + P C +LG L A F A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 192 LA 193
A
Sbjct: 126 AA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
Y L + + G ++ A + A ++ + + GLG + LG + A
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARY-FLGLGACRQSLGLYEQA 71
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
L ++ + + ++QLG ++ A+ A +
Sbjct: 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 6e-12
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
Y LG Q + G + A F+ + + + LG LG E+A + A
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 360 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL 393
+D + + E + D A F +AR L
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-11
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 377
+ + D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 378 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
AL ++ + + H + G+ + A F A
Sbjct: 66 GLYEQALQSYSYGALMDINE-----PRFPFHAAECHLQLGDLDGAESGFYSAR 113
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 105 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164
++ D + L ++ G++ D+ + ++ + LG+G CR
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQS 64
Query: 165 LGQLGKARQAFQRALQLDPENVEALVALAV 194
LG +A Q++ +D A
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAE 94
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 5e-10
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 6/141 (4%)
Query: 212 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 271
+ + L L + + G+ +++ + + + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQ 63
Query: 272 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331
S G YE+A Y ++ + + L+LGD A + F +
Sbjct: 64 SLGLYEQALQSYSYGA-LMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 332 ETLKALGHIYVQLGQIEKAQE 352
L + ++
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 25 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS 84
+ E + Y ALG GK + A + + +D ++
Sbjct: 12 GLSEDTLEQLY-------ALGFNQYQAGKWDD-----------AQKIFQALCMLDHYDAR 53
Query: 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 144
++G G + G EQA ++ D + A G + + A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
Query: 145 QVHPSCP 151
+ + P
Sbjct: 114 ALAAAQP 120
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 629 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688
L G + G++D ++ +F + ++ L + G + A
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQA 71
Query: 689 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738
++ Y + + + A H + + A LA +
Sbjct: 72 LQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 611 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 670
+ A++++ + + + G G G ++ + ++ P
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-----PR 87
Query: 671 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 718
+ A + G+ A + + + L A EA
Sbjct: 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 726
+ L + G + A K++Q +Y+ L L ++ +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQ 73
Query: 727 SLLRAIHLAPSNYTLRFDAGVAMQK 751
S + + F A +
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQ 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/120 (13%), Positives = 40/120 (33%)
Query: 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 542
L+ L Q A +++ + +L L A ++ + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 543 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 602
++ P + L+ D A+ F +A + ++ L+ A+ K
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 8e-15
Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 41/179 (22%)
Query: 261 HSYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 317
++ NL +++ G++ A + + KE Y LG + LG+F +A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 318 TNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371
++K L + ++ +LG+ Y L EKA + K
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-------------- 115
Query: 372 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
L I+ + D R ++G + G + A + L
Sbjct: 116 --LAIAQELK---DRIGEGRA-------------CWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-14
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 223 AMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKA 279
A L N + G E L + + +Y NL +Y G++E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 280 GLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDN 330
YY + +++ Y LG L D+ A+ K L I
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 331 CETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+LG+ Y LG ++A K +I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-10
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 37/176 (21%)
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217
+G Y LG A A ++ L + + + A
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLL--------------IAKEFGDKAAE------------ 48
Query: 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKG 274
+A + L N + F G+ + + L + ++ S Y+L +Y
Sbjct: 49 -----RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103
Query: 275 DYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 327
DYEKA Y++ +E+ + LG LG+ A+ EK LEI
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 9e-07
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 43/172 (25%)
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGIGLCRYKLGQLGKARQAF 175
LG + G + D++ +++ L + + +G LG+ A + +
Sbjct: 15 LGNTH--YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 176 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 235
++ L L R A + L N +
Sbjct: 73 KKTLLL------------------ARQLKDRAVE-------------AQSCYSLGNTYTL 101
Query: 236 TGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 283
+ LA+ + + + ++L +Y + G++++A +
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNHDQAMHFA 152
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 32/162 (19%)
Query: 39 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 92
LG + LG A + + I E + G
Sbjct: 10 RAFGNLGNTHYLLGNFRD-----------AVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58
Query: 93 LLAKGEVEQASS----AFKIVLEA-DRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQV 146
+ GE E AS + + DR Y +++++ + L +
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Query: 147 ------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL 181
+G LG +A ++ L++
Sbjct: 119 AQELKDRIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 9e-15
Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 15/270 (5%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
F G Y + +R P + + + G + + ++
Sbjct: 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQ 66
Query: 188 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 247
A+ A + I +++ + + L A+ +F+ +
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIYFYDQNP-------D 118
Query: 248 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 307
AL + G + + + A + +++ ++ +
Sbjct: 119 AALRTLHQGDSLEC-MAMTVQILLKLDRLDLA-RKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ A F+++ + L ++ G+ E A+ +L++A D +
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Query: 368 FIDLGELLISSDTGAALDAFKTARTLLKKA 397
I+L L G + + LK A
Sbjct: 237 LINLVVLSQ--HLGKPPEVTNRYLSQLKDA 264
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 18/233 (7%)
Query: 90 GQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 147
+ L + + + + D N LL A + F +L + +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 148 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 207
KL +L AR+ ++ D + +A A + L A ++
Sbjct: 132 C------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQD 184
Query: 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 267
Q + + LN A G+ E + + AL + NL
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGHPETLINLV 241
Query: 268 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 320
G + Y++ +K+ ++ H FI + + K DF + +
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFI------KEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 7e-09
Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 8/169 (4%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
+ A S + + + + + + +AL
Sbjct: 67 AVRMFAEYLASHSRRDAI-VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 381
+ + I ++L +++ A++ L+K D + + +++
Sbjct: 126 QGDSLECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 382 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
DA+ + + K + +LN H +G +E+A ++AL
Sbjct: 181 KLQDAYYIFQEMADKCSPTL--LLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 7e-08
Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 3/139 (2%)
Query: 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQA 124
LA + K D T + + LA G +++ A F+ + + + L GQA
Sbjct: 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207
Query: 125 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184
+GR+ + + AL P + + L ++ + +
Sbjct: 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
Query: 185 NVEALVALAVMDLQANEAA 203
+ + + +
Sbjct: 268 H-PFIKEYRAKENDFDRLV 285
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/269 (12%), Positives = 80/269 (29%), Gaps = 18/269 (6%)
Query: 307 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
+G ++ + ++V P+ E L Y+ + + ++ + +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL 65
Query: 366 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 425
QA E L + + ++ + L I+F ++A ++
Sbjct: 66 QAVRMFAEYL--ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 426 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 485
+ I L +L + D + +
Sbjct: 124 LHQGDSLECMAMTVQ-------ILLKLDRLDLARKELKKMQDQDEDATLTQLAT--AWVS 174
Query: 486 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 545
LA E++ D A +++ + K + AA A+ + + ++ EAL +
Sbjct: 175 LAAGGEKLQD---AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 546 KYPNALSMLGDLELKNDDWVKAKETFRAA 574
+P L L L + + +
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 9e-04
Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 27/240 (11%)
Query: 519 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDA 577
R + +A + +++E + A+ M + + R S +
Sbjct: 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 578 TDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHL-----------EKAKELYTR 621
D ++ L + N AALR + LE + + A++ +
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK 155
Query: 622 VIVQHTSNLYAANGAGVVLAEKGQ--FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 679
+ Q V G + +F ++ + S + + A +
Sbjct: 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-----LLLLNGQAACH 210
Query: 680 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL-RAIHLAPSN 738
AQG + A + Q L K + + L+ L + + L + S+
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGHPET--LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 1/141 (0%)
Query: 57 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 116
I + + I KG +E+A F+ + D N
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 117 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 176
V ++G A + + ++ + + Y A + + + G C+ +L KA++ F+
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV-FHTGQCQLRLKAPLKAKECFE 128
Query: 177 RALQLDPENVEALVALAVMDL 197
+Q + + A + +D
Sbjct: 129 LVIQHSNDEKLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
Y+ A +++KG E+A +++ + + GL + F+ A +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDY-IMGLAAIYQIKEQFQQAADLYAV 95
Query: 323 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
+ ++ + G ++L KA+E + +
Sbjct: 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
Y G A F + N + + L IY Q ++A +L A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 360 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTA 390
+ D G+ + A + F+
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
+ + D ++ + + I D + + + + + G+IE+A+ R D
Sbjct: 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67
Query: 363 RDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 421
+ + L + A D + A L K + + G
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-----YTPVFHTGQCQLRLKAPLK 122
Query: 422 AHQSFKDAL 430
A + F+ +
Sbjct: 123 AKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-08
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 212 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV----TNHGPTKSHSYYNLA 267
++ I + A F+ G+ E A + LA
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRI-------EEAEVFFRFLCIYDFYNVDYIMGLA 77
Query: 268 RSYHSKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 326
Y K +++A LY +A N P + GQ QL+L A FE V++
Sbjct: 78 AIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 327 YPDNCETLKA 336
D +KA
Sbjct: 134 SNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 629 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 688
+ KG+ + ++ F + + D + LA +Y + F A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQA 89
Query: 689 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738
+Y D + + + + K+ I +
Sbjct: 90 ADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 726
M D + A+ ++ +G A ++ +YN D ++ LA + EQ+Q
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--IMGLAAIYQIKEQFQQAAD 91
Query: 727 SLLRAIHLAPSNYTLRFDAGVA 748
A L ++YT F G
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC 113
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 56/278 (20%), Positives = 90/278 (32%), Gaps = 55/278 (19%)
Query: 129 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 179
++ K+AL+ HP A L + L + +A AL
Sbjct: 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 180 QL--------DPENVEALVALAV--MDLQANEAAGIRKGMEKM-QRAFEIY--------P 220
+ P L LAV + A E + +RA EI P
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA------EPLCKRALEIREKVLGKFHP 124
Query: 221 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKG 274
A LN LA G+ VE AL + + P + + NLA Y +G
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD-PNVAKTKNNLASCYLKQG 183
Query: 275 DYEKAGLYYMASVKEINK-----PHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEI-- 326
Y+ A Y + ++ + P + + + R + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 327 ----YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
P TL++LG +Y + G++E A L A++
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 39/201 (19%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFP-YYGLGQVQLKLGDFRS 315
S ++ A ++ E + H + L V ++
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 61
Query: 316 ALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------ 361
A L I P TL L +Y + G+ ++A+ L ++A +I
Sbjct: 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 362 --PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA--------GEEVP--IEVLNNI 409
P A+ +L L + + ++A G + P + NN+
Sbjct: 122 FHPDVAKQLNNLALLCQN------QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175
Query: 410 GVIHFEKGEFESAHQSFKDAL 430
+ ++G+++ A +K+ L
Sbjct: 176 ASCYLKQGKYQDAETLYKEIL 196
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-14
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 30/170 (17%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
S +N K D++ A + + + PH I + +G + L + A F
Sbjct: 8 SLWNEGVLAADKKDWKGA----LDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 61
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGELLISSDT 380
+ + G +Y Q + + A + L++A + + LG
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121
Query: 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
EVL NI ++ +K E++ A + A
Sbjct: 122 -----------------------EVLYNIAFMYAKKEEWKKAEEQLALAT 148
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
S +N+ Y + +A + S+ +K Y+ G + + + A
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK--HLAVAYFQRGMLYYQTEKYDLA 90
Query: 317 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 361 DPRDAQAFID 370
+ ID
Sbjct: 151 KSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 77/241 (31%)
Query: 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 182
+ + ++ + +L+ + H I IG L + +A +AF R++ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 242
A + + EK A + AL L +
Sbjct: 68 KHLAVAYFQRGM----------LYYQTEKYDLAIKDL---KEALIQLRGNQLI------- 107
Query: 243 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 302
DY+ GL + E+ Y
Sbjct: 108 --------------------------------DYKILGLQFKLFACEV---------LYN 126
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
+ + K +++ A + + + +I+KA E + K +P
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
Query: 363 R 363
Sbjct: 175 V 175
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 29/173 (16%)
Query: 41 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 100
L GV + A ++ G + +
Sbjct: 9 LWNEGVLAADKKDWKG-----------ALDAFSAVQDPH---SRICFNIGCMYTILKNMT 54
Query: 101 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--IRLGI 158
+A AF + D+ A + + + +Y +++ K AL LG+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 159 -------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198
K + KA + A + E + + A+ +
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
+ S + +A L + A ++ + E + LG Q + A+
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA---WRSLGLTQAENEKDGLAIIALN 75
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
+ P + AL + A LR P+ Q
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 289 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 348
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 349 KAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 390
A L A +DP+D L + AAL + +
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 7e-11
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 116 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 175
+ + +++ ++ Q P A +GL + + + G A A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-WRSLGLTQAENEKDGLAIIAL 74
Query: 176 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220
A LDP+++ ALAV + A + ++ P
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNAN---AALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
+ +G +L + +A+ AF+ V + + + A + + ++ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184
+ P + + A + + L P+
Sbjct: 80 LDPKDIAV-HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 11/81 (13%), Positives = 20/81 (24%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
A + + + W G + A A D ++ A
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 128 FNRGRYSDSLEFYKRALQVHP 148
N + +L + L P
Sbjct: 96 TNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217
GL KL L +A AF+ Q +PE EA +L + + + + + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARM 79
Query: 218 IYPYCAMALNYLANHFFFTGQH 239
+ P LA
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNA 101
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 672 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 731
+ N A A ++ +K +A L T E E+ +L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHA 77
Query: 732 IHLAPSNYTLRFDAGVA 748
L P + + V+
Sbjct: 78 RMLDPKDIAVHAALAVS 94
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 696
G+ + + + F EA + + W +L LA+ +
Sbjct: 24 GLSMLKLANLAEAALAF----EAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 697 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736
+ LA +H SL + P
Sbjct: 79 MLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 535
P+ + ++ + A++ + + K + +A+ L L+I
Sbjct: 13 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII 72
Query: 536 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 574
+N A ++ K + L + A + RA
Sbjct: 73 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 5e-14
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
+DPR A+A+ +LG + A +KA E P E N+G ++++G
Sbjct: 64 LDPRSAEAWYNLGNAY------YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 418 EFESAHQSFKDAL 430
+++ A + ++ AL
Sbjct: 118 DYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 3e-11
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRS 315
P + ++YNL +Y+ +GDY++A YY K + P +Y LG K GD+
Sbjct: 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDP-RSAEAWYNLGNAYYKQGDYDE 87
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
A+ ++K LE+ P + E LG+ Y + G ++A E +KA ++DP
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 1e-09
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 42 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 101
LG Y G + A +YY KA +D W G +G+ ++
Sbjct: 5 YNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
Query: 102 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161
A ++ LE D + A + +G Y +++E+Y++AL++ P A +G
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNA 112
Query: 162 RYKLGQLGKARQAFQRALQLDPEN 185
YK G +A + +Q+AL+LDP +
Sbjct: 113 YYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 5e-08
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 43/173 (24%)
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217
+G YK G +A + +Q+AL+LDP + EA L A E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----------AYYKQGDYDEAIE 56
Query: 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277
Y + AL + P + ++YNL +Y+ +GDY+
Sbjct: 57 YY---------------------------QKALELD---PRSAEAWYNLGNAYYKQGDYD 86
Query: 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 330
+A YY ++ E+ P +Y LG K GD+ A+ ++K LE+ P +
Sbjct: 87 EAIEYYQKAL-EL-DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 6e-13
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 1/129 (0%)
Query: 65 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 124
+ I G E A F+ + D + LG
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 125 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184
G+Y ++ Y + P C + G+L +A A +L
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP-FHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 185 NVEALVALA 193
E
Sbjct: 122 XPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 8e-12
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 4/121 (3%)
Query: 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 333
G G A + EI+ + + Y L Q + G + A F+ + + +
Sbjct: 1 GPLGSGGGTI-AMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTART 392
LG +GQ + A A +D + + E L+ + A A+
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
Query: 393 L 393
L
Sbjct: 118 L 118
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-11
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 97 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 156
G + ++ E D + L A ++ G Y D+ ++ + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-L 59
Query: 157 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 216
G+G CR +GQ A ++ +D A LQ E + + + A
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQ 116
Query: 217 EIYP 220
E+
Sbjct: 117 ELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
Y+LA + + G YE A + A ++ H + GLG + +G + A
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLD--HYDSRFFLGLGACRQAMGQYDLA 74
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ ++ + +Q G++ +A+ L A ++ +
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 43/188 (22%)
Query: 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 225
G LG ++ + +E L +LA Q + A ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQ----------SGXYEDAHXVF-QALCV 49
Query: 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285
L+ S + L + G Y+ A Y
Sbjct: 50 LD-----------------------------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Query: 286 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 345
++ + + L+ G+ A + E+ + E + + L
Sbjct: 81 GA-VMDIXEPR--FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137
Query: 346 QIEKAQEL 353
I+ +E+
Sbjct: 138 AIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 38/120 (31%)
Query: 311 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
G S + EI D E L +L Q G E A + + +D D++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--- 57
Query: 371 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
+G G+++ A S+
Sbjct: 58 -----------------------------------FLGLGACRQAMGQYDLAIHSYSYGA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 612 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 671
L + + L + G ++ + +F +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRF 57
Query: 672 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 731
++ L A G + LA+ Y + + + A + + + + L A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 732 IHLAPS 737
L +
Sbjct: 116 QELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 726
+ +LA + G + A ++Q +Y++ L L Q+
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--FLGLGACRQAMGQYDLAIH 76
Query: 727 SLLRAIHLAPSNYTLRFDAGVA 748
S + F A
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAEC 98
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 8e-13
Identities = 58/311 (18%), Positives = 93/311 (29%), Gaps = 80/311 (25%)
Query: 129 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 179
++GRY ++ K+AL+ HP A L + L + A AL
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 180 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY----PYCAMALNYLANHFFF 235
IR+ + P A LN LA +
Sbjct: 97 A------------------------IRE---------KTLGKDHPAVAATLNNLAVLYGK 123
Query: 236 TGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 289
G++ E L + AL + +H P + NLA ++G YE+ YY ++ E
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDH-PDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-E 181
Query: 290 INK-------PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---------PDNCET 333
I + P+ L LK G F+ A T ++++L +N
Sbjct: 182 IYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLIS-SDTGAALDA 386
G+ + P +LG L AA
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
Query: 387 FKTARTLLKKA 397
+ A K+
Sbjct: 301 EEAAMRSRKQG 311
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 8e-13
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A +LG
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 58.9 bits (144), Expect = 1e-10
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 38/139 (27%)
Query: 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 351
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 352 ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 411
E +KA ++DP +A+A+ N+G
Sbjct: 64 EYYQKALELDPNNAEAW--------------------------------------YNLGN 85
Query: 412 IHFEKGEFESAHQSFKDAL 430
++++G+++ A + ++ AL
Sbjct: 86 AYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 2e-07
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 146 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
+ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 72 LDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 322 KVLEIYPDNCETLKALGHIYVQLG 345
K LE+ P+N E + LG+ + G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-12
Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 52/281 (18%)
Query: 131 GRYSDSLEFYKRA--------LQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQ 180
+ S++ E +A ++ P A + QL +A+ A+ + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 240
N A +A + K +++M A + +
Sbjct: 65 AHANNRSLFHAAKAF----EQAGMMLKDLQRMPEAVQYIEKAS----------------- 103
Query: 241 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFI 297
+ V N P + + A D KA Y A + + +
Sbjct: 104 --------VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 351
++ ++ F A + +K +Y P + A + + AQ
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 352 ELLRKAAKI----DPRDAQAFIDLGELLISSDTGAALDAFK 388
+ +R++ I D A DL + D L +
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE------TLKALGHIYVQLGQIEKAQEL 353
Y A + + E + +N + G + L ++ +A +
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 354 LRKAAKI-----DPRD-AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVL 406
+ KA+ + P A A G+L+ D A+ ++ A + + E++
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 407 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 447
+ + +F+ A S + + + K +
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 49/283 (17%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF-NRGRYSDSLEFYKRALQVH 147
+ +AK E +S K + D D+ + +A V F N + + + Y + + H
Sbjct: 9 EAHEHIAKAEKYLKTSFMKW--KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 148 PSCPGAIRLG-----IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-- 200
+ G+ L ++ +A Q ++A + EN A +D
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 201 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 260
E + K + Q+A ++ +
Sbjct: 127 EPLDLSKAVHLYQQAAAVFEN-------------------------------EERLRQAA 155
Query: 261 HSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSAL 317
+R + +++A E+ VQL D+ +A
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 318 TNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRK 356
+ I ++C L+ L Y E+ + R
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 509 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 562
Y Y + A K L+ + + + + + A G +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 563 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 622
+A + AS + T AA+ ++ +E L KA LY +
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDT---------AAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 623 IV------QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINL 675
+ A +L + +FD + + + + I
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 676 AHVYFAQGNFALAMKMYQNCL 696
V + ++ A K +
Sbjct: 202 VLVQLHRADYVAAQKCVRESY 222
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 298 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 357
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A + +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 358 AKIDPR--DAQAFIDLGELL 375
++ + +L +
Sbjct: 68 IEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-09
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
P + Y LA+ + + +A + V+ P +++ YY LG++ +L A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDA 60
Query: 317 LTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQ 351
+ + + +E+ + + L L ++ +E
Sbjct: 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDA 386
P++ T AL +++ +A L + + DP + LG+L T A+D
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 387 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 424
+ + ++ G + L+ + + E H
Sbjct: 64 YAQGIEVAREEGT---QKDLSELQDAKLKAEGLEHHHH 98
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 115 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 174
++ A S +L ++ ++ P G +G +L + A
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LGKLYERLDRTDDAIDT 63
Query: 175 FQRALQLDPENVEA 188
+ + +++ E
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 6e-12
Identities = 47/349 (13%), Positives = 97/349 (27%), Gaps = 60/349 (17%)
Query: 111 EADRDNVPALLGQ-----ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR----LGIGLC 161
E + + A V N G ++ K AL+ P R +G
Sbjct: 3 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 62
Query: 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 221
+ G+L ++ Q+ +M R +++ Y
Sbjct: 63 LHCKGELTRSLALMQQTE-------------------------------QMARQHDVWHY 91
Query: 222 CAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDY 276
+L + F G + E A + P A+ +
Sbjct: 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151
Query: 277 EKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---- 330
++A + ++ ++ P + + L Q L GD +A + ++ + +
Sbjct: 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211
Query: 331 ---CETLKALGHIYVQLGQIEKAQELLRKAAKID----PRDAQAFIDLGELLISS-DTGA 382
K + G A LR AK + + ++ I +
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 383 ALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
A + + L + ++++ G A + DAL
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 51/308 (16%), Positives = 105/308 (34%), Gaps = 50/308 (16%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRA 143
G++L KGE+ ++ + + + R + + +L+ Q+ + F +G + E ++A
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 144 LQVH-----PSCPGAIRLGIGLCR--YKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196
Q+ P L + + +L +A + + +++
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV--------------- 164
Query: 197 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 256
+ Q ++ + LA + L +L H
Sbjct: 165 ------------LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLLGNGKYHS 211
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRS 315
S++ + GD A + + K + F+ + + + Q+ LG+F
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 316 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQA 367
A E++ E D L L +Y Q G+ AQ +L A K+ R
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 331
Query: 368 FIDLGELL 375
F+ GE +
Sbjct: 332 FVIEGEAM 339
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 16/230 (6%)
Query: 520 LAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA 574
A +A N + L AL+ A S+LG++ + ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 575 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 634
D + L + T + + + + + Q + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 694
+L + D ++ E S Q L A+G+ A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 695 C---LRKFYYNTDAQILLYLARTHY--------EAEQWQDCKKSLLRAIH 733
L Y++D R Y A W A +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-11
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 5/126 (3%)
Query: 307 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
+ + L + + P N E LG Y+ + R+A ++ +A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 367 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 424
+ L +L + R ++ KA I L + F + + A +
Sbjct: 80 LYAALATVLYYQASQHMTAQ---TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 425 SFKDAL 430
++ +
Sbjct: 137 LWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
Q R + W G+ L + + + A++ L+ +N A V
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 128 F---NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 184
+ ++ + + +AL + + A + + + +A + +Q+ + L+
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITA-LMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Query: 185 NVEALVALAVMDL 197
+ + +++
Sbjct: 148 RINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 93 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 152
++ E A + + A+ N + YS+SL Y++ALQ+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA- 78
Query: 153 AIRLGIGLCRYKLGQ---LGKARQAFQRALQLDPENVEALVALAVMDLQANE 201
+ + Y + R +AL LD + AL+ LA
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 19/126 (15%), Positives = 35/126 (27%)
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
E + P S + L Y + DY + L Y +++ + E
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361
+ Q +K L + + L L +A EL +K ++
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 362 PRDAQA 367
Sbjct: 146 SPRINR 151
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 111 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 170
+A R ++ L+ + ++ +P L +G
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWAL-LGEYYLWQNDYSN 62
Query: 171 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 230
+ A+++ALQL EN E ALA + + + +A + AL LA
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 231 NHFFFTGQH 239
+ F +
Sbjct: 123 SDAFMQANY 131
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 47 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQAS 103
+ LG+ Q + + Y +A ++ + +L + Q
Sbjct: 46 QWALLGEYYLWQNDYSN----SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101
Query: 104 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148
+ L D + + AL+ A F + Y+ ++E +++ + ++
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 274 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 333
G +A YY ++ + + Y GLG LG++R A ++ +P++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 364
+ LG+ E+ ELL K D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 310 LGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
LG A+ +EK + D E LG + LG+ KA+ +L K P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 367 AFIDLGELL 375
+ +L
Sbjct: 63 LRVFYAMVL 71
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 131 GRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
G + ++ +Y++A+ LG+G LG+ KA ++ P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 189 LVALAV 194
V A+
Sbjct: 64 RVFYAM 69
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 68 ATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 124
A YY KA + ++G G GE +A + ++ ++ + A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 125 CVEFNRGRYSDSLEFYKRALQVHPSCPG 152
V +N GRY +E + +
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
++ ++E A +Y ++ E+N P ++ + KLG++ A
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELN-PANAVY-FCNRAAAYSKLGNYAGA 65
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 373
+ + E+ + I P + +G L + +A +KA ++DP + +L
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
P + + N A +Y G+Y A ++ I+ + Y +G L A
Sbjct: 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP--AYSKAYGRMGLALSSLNKHVEA 99
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQ 346
+ ++K LE+ PDN L ++L +
Sbjct: 100 VAYYKKALELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 74 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 133
S D E +G + E A + +E + N +A G Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 134 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 192
+ +++ +RA+ + P+ A R+G L L + +A +++AL+LDP+N L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMG--LALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 193 AVMDLQANEA 202
+ +L+ EA
Sbjct: 121 KIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
K E+F A +Y KA ++ + + G A + + D A
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167
+ ++ +++ +YK+AL++ P + + + KL +
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETY-KSNLKIAELKLRE 129
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+ LG+ + F +AL + L+ P K LG G A++
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 360 IDPR--DAQAFIDLGELLISSDTGAALDAFK 388
D Q +L L AL+
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-09
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
E +L DN LG Y + Q + A LR A DP + A+ LG+ L
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 376 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 411
D A A+++ L A +V+ + V
Sbjct: 64 QGQGDRAGARQAWESG---LAAAQSRGDQQVVKELQV 97
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 99 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 158
++ + + +L DN+ ++ +L + AL P+ A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWL 59
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEA 188
G G ARQA++ L +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQAC 125
T+ G+ + + A + L+ D A LG+
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 126 VEFNRGRYSDSLEFYKRALQVHPS 149
+G + + + ++ L S
Sbjct: 64 QG--QGDRAGARQAWESGLAAAQS 85
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 134 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193
E + L R +G + Q A + AL DP A L
Sbjct: 2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 8e-10
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 234 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 293
+ E+ E+ T ++ Y G Y +A + Y V +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 294 HEF------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---G 338
+ + + L LKL ++ A+ +K L + N K L G
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYRRG 358
Query: 339 HIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ + + E A+ K +++P++ A
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
K ++ A Y K E + +AS +F + A
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYG----------LSEKESKASESFLL---------AAF 320
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 179
L A Y+ ++E +AL + + + R G + + + A+ F++ L
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG--EAQLLMNEFESAKGDFEKVL 378
Query: 180 QLDPENVEALVALAVMDLQANEAAGIRKGM-EKM 212
+++P+N A + +++ +A E + + M
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 9e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 351
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 352 ELLRKAAKIDPRDAQAFIDLGELL 375
E +KA ++DP +A+A +LG
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAK 87
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 322 KVLEIYPDNCETLKALGHIYVQLG 345
K LE+ P+N E + LG+ + G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 4e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 131 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
G Y +++E+Y++AL++ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 1e-09
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
YY + G+Y ++ + ++ +++ P E + G+ L + A+ +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-P-EESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 323 VLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
V+ + D N + A + E E+ AK++
Sbjct: 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Query: 78 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 137
+ P + +G L G ++ F+ ++ D + L + +N RY +++
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 138 EFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185
+ Y + V + + + + +L+ +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 6e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
YY G +Q G++ ++ FEK +++ P+ + G L + E+A +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 360 I--DPRDAQAFIDLGELL 375
+ D + + + L
Sbjct: 69 VIEDEYNKDVWAAKADAL 86
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 326 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG---A 382
+ N E G + G ++ +L KA ++DP +++ ++ G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEE 58
Query: 383 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
A+D + + +E +V E + +
Sbjct: 59 AVDCYNYV---INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
P +S + ++ ++ YE+A Y + + + + +
Sbjct: 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIEDEYNKDVWAAKADALRYIEGKEVE 95
Query: 317 LTNFEKVLEIYPDN 330
E ++ +
Sbjct: 96 AEIAEARAKLEHHH 109
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFP--------------YYGLGQVQLKLGDFRS 315
+ E+A Y ++ + F + + +KL +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248
Query: 316 ALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
A+ + VL N KAL G +LGQ++ A++ RKA K P D
Sbjct: 249 AIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 53 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 112
K++ KEE A Q Y A ++G + G+ + + A K
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAVKNPC-- 232
Query: 113 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKA 171
L A RY +++ L P A+ R G + +LGQ+ A
Sbjct: 233 -------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG--KAKAELGQMDSA 283
Query: 172 RQAFQRALQLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 212
R F++A + P++ L + + + ++ + +
Sbjct: 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 9e-04
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 22/151 (14%)
Query: 210 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 269
EK++ A + Y MA+ Y+ + F F + N+A
Sbjct: 193 EKLEEAMQQY---EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL----------NIAAC 239
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 329
Y++A + + V + + + G+ + +LG SA +F K + PD
Sbjct: 240 LIKLKRYDEA-IGHCNIVLTEEEKNPKA--LFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 330 NCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+ + L + E+ + L +K ++
Sbjct: 297 DKAIRRELRAL------AEQEKALYQKQKEM 321
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEF-----------IFPYYG-LGQVQLKLGDFRSAL 317
Y +G Y++A L Y V + F + L LKL F +A+
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 318 TNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ K LE+ +N K L G ++ + E A+ +K ++ P + A
Sbjct: 217 ESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
KE + A Y K +E S E Q + A ++
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFS----------NEEAQKAQALRLAS---------H 199
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 179
L A +S ++E +AL++ + + R G + AR FQ+ L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG--EAHLAVNDFELARADFQKVL 257
Query: 180 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 212
QL P N A LA + A +K M
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 173
F G+Y +L YK+ + A L + +C KL A +
Sbjct: 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217
Query: 174 AFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 231
+ +AL+LD N + L A + + E A Q+ ++YP A LA
Sbjct: 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELA-----RADFQKVLQLYPNNKAAKTQLAV 272
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-08
Identities = 112/720 (15%), Positives = 208/720 (28%), Gaps = 231/720 (32%)
Query: 25 EIDEYYADV--RYERIAILNALGVYYT--YLGKIETKQREKEEHFILATQYYNKASRIDM 80
E Y D+ +E A ++ I +K E+ +H I++ + R+
Sbjct: 13 EHQYQYKDILSVFED-AFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRL-- 67
Query: 81 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-----RGRYSD 135
W LL+K E K V E R N L+ E Y +
Sbjct: 68 ----FW-----TLLSKQE----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 136 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NV-------- 186
+ QV + R + K RQA L+L P NV
Sbjct: 115 QRDRLYNDNQVFA--KYNV------SRLQ--PYLKLRQA---LLELRPAKNVLIDGVLGS 161
Query: 187 --EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 244
+ + ++ M+ F+I+ + + N + L+ Q
Sbjct: 162 GKTWVALDVCLSY------KVQCKMD-----FKIF-WLNLK-NCNSPETVLEMLQKLLYQ 208
Query: 245 LTETALAVTNHG---PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
+ + ++H + HS R YE L + +V+ + +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNAK-----AWNAF 262
Query: 302 GLG-QVQL-----KLGDFRSALTNFEKVLE-----IYPDNCETL--KALGHIYVQLGQIE 348
L ++ L ++ DF SA T L+ + PD ++L K L
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--------- 313
Query: 349 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 408
+ Q+L R+ +P +S ++ E +
Sbjct: 314 RPQDLPREVLTTNP-----------RRLS---------------II---AESIR------ 338
Query: 409 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ-LFHR-- 465
G+ ++ W + K T +I++S ++L+ + + +F R
Sbjct: 339 DGLATWDN------------------WKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLS 379
Query: 466 -FENDGNHVELP-------WNKVTVLFNLARLLEQIHDTVAASVLYRLIL-----FKYQD 512
F +P W V + V Y L+
Sbjct: 380 VFPPS---AHIPTILLSLIWFDVIK--------SDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 513 YVDAYLRLAAIAKARNNLQLSIELVN-----EALKVNGKYPNALSM---------LGDLE 558
YL L K N L +V+ + + P L L ++E
Sbjct: 429 P-SIYLELK--VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 559 LK-----------NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL 607
+ +++ K R S A + S N L+ K
Sbjct: 486 HPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSIL-------NTLQQLKFYKP---- 532
Query: 608 EATHLEKAKELYTRVI-------VQHTSNLYAANGAGVV---LAEKGQFDVSKDLFTQVQ 657
++ Y R++ + NL + ++ L + + + ++ QVQ
Sbjct: 533 ---YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 5e-06
Identities = 86/601 (14%), Positives = 156/601 (25%), Gaps = 203/601 (33%)
Query: 503 YRLILFKYQD---------YVDAYLR-------LAAIAKARNNLQLSIELVNEALKVNGK 546
Y+ IL ++D V + + I +++ + ++ L L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE 76
Query: 547 YPNALSM-LGDLELKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 603
+ + ++ N ++ + K R S T L N N A N R
Sbjct: 77 --EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 604 APKLEA--THLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEKGQFDVSKDLFTQVQEAA 660
L + + + ++ + G+G +A DV +VQ
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL-----IDGVLGSGKTWVA----LDVCLSY--KVQCKM 180
Query: 661 SGSVFVQMPDVWINLAHV--------------YFAQGNFA-------------------- 686
+F W+NL + Y N+
Sbjct: 181 DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 687 ---LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ----DCKKSLLRAIHLAPSNY 739
L K Y+NCL ++L A+ W C K LL
Sbjct: 235 RRLLKSKPYENCL----------LVL---LNVQNAKAWNAFNLSC-KILL---------- 270
Query: 740 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK 799
T R V S T + D T+ E + L D +
Sbjct: 271 TTR-FKQVT---DFLSAATTTHISLDHHSMTLTPDE-VKSLL-----LKYLDCRPQDLPR 320
Query: 800 INTHVEYCKHL-----LDAAKIHREAA--EREEQQNRQRQEAARQAALAEEARRKAEEQK 852
E + A I A + + N + +++L AE +K
Sbjct: 321 -----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRK 373
Query: 853 KY---------------LLEKRKLEDEQKRLRQQEEHFQR---VKEQWRSST---PASKR 891
+ LL + + + + V++Q + ST P+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 892 RERSENDDDEVGHS---EKRRRKGGKRRKKDKSSRS--------------H-YETEYAEA 933
+ + +++ H + + D H E+ E
Sbjct: 434 ELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 934 DMM------DYR---------EEPEDEDASM--------NYREPIGQMNDQDDDVEENAN 970
+ D+R + S+ Y+ I D D E N
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVN 546
Query: 971 D 971
Sbjct: 547 A 547
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-08
Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 12/236 (5%)
Query: 142 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201
+ L + R KL + + N A+ + L +
Sbjct: 115 KTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLS--K 172
Query: 202 AAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPTK 259
A + +I P+ L A+ + G + + +E + P
Sbjct: 173 ALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF 232
Query: 260 SHSYYNLARSYHSKGDYE-------KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 312
+++ A + A + ++ + + + Y L G
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 313 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 368
+ +++ + LG +Y G +A + A + P +
Sbjct: 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 16/156 (10%), Positives = 46/156 (29%), Gaps = 12/156 (7%)
Query: 46 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL--------LAKG 97
+ + + ++ A++ + + K + L +
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 98 EVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 155
++ ++ ++ N +++ +A +G+ +S + + + S +
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315
Query: 156 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 191
LG G +A A+ A L P
Sbjct: 316 LGKVY--EMKGMNREAADAYLTAFNLRPGANTLYWI 349
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%)
Query: 321 EKVLEIYPDNCETLKAL--GHIYVQLG---QIEKAQELLRKAAKIDPRDAQAFIDLGE-- 373
E + +I P L H Y+ G + +A ELL + + P A +
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243
Query: 374 LLISSDTGAALDAFKTARTLLKKAGEEVPI----EVLNNIGVIHFEKGEFESAHQSFKDA 429
++ S T + + + V KG+ + ++Q+
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
Query: 430 L 430
+
Sbjct: 304 I 304
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 253 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 312
+N + + +L + + + D+EKA ++Y ++ E++ P F Y V +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELD-PSNITF-YNNKAAVYFEEKK 57
Query: 313 FRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 362
F + EK +E+ + K G+ + + + A + ++
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-06
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 311
P+ Y N A Y + + + + +V E+ + + G K
Sbjct: 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQN 97
Query: 312 DFRSALTNFEKVLEIYPDNCETLKAL 337
D A+ F + L + D E +K +
Sbjct: 98 DLSLAVQWFHRSLSEFRDP-ELVKKV 122
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148
G + + E+A + +E D N+ +A V F ++++ ++F ++A++V
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 149 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 185
+L G K L A Q F R+L +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 7e-08
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFP-------------YYGLGQVQLKLGDFRSA 316
+ K + +A + Y ++ E+ L K D+ A
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107
Query: 317 LTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ + KVL+I +N +KAL G + G +E+A+E L KAA ++P +
Sbjct: 108 IDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPG---------------AIRLGIGLCRYKLGQLGKAR 172
F + ++++ YK AL + L + C K KA
Sbjct: 49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108
Query: 173 QAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 230
+ L++D NV+AL +A M E A E + +A + P N
Sbjct: 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEA-----KENLYKAASLNPNNLDIRNSYE 163
Query: 231 N 231
Sbjct: 164 L 164
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
K+ A Y +A +H + +I
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEE---------WDDQILLDKKKNIEISC---------N 91
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 179
L A Y +++ + L++ + A+ +LG + G L +A++ +A
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG--VANMYFGFLEEAKENLYKAA 149
Query: 180 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 212
L+P N++ + ++ + M
Sbjct: 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 9e-08
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 270 YHSKGDYEKAGLYYMASVKEINKPHEFIFP---------------YYGLGQVQLKLGDFR 314
+ DY++A Y ++ ++ P Y + Q L +GD
Sbjct: 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH 80
Query: 315 SALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
A +VL+ N KAL + ++++A+E L+ + P A
Sbjct: 81 EAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
++ + A Y A L + + +E DR N+P
Sbjct: 23 VQKDYKEAIDAYRDA----------------LTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 179
+ N G ++ E L+ + A+ R R +L +A + + L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA--KARIAAWKLDEAEEDLKLLL 124
Query: 180 QLDPENVEALVAL--AVMDLQANEAAGIRKGMEKM 212
+ P + V + +A + A R KM
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 264 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEK 322
YN+A G Y+ A +++ ++ + Y LG+ +F+ A F
Sbjct: 6 YNVAFDALKNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64
Query: 323 VLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
++ YP + L LG G+ +AQ+ L++ A P A
Sbjct: 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--------YYGLGQVQLKLGDF 313
+ Y L SY++ +++ A + V +P LG Q G
Sbjct: 41 ALYWLGESYYATRNFQLAEAQFRDLVSR--------YPTHDKAAGGLLKLGLSQYGEGKN 92
Query: 314 RSALTNFEKVLEIYPDNCETLKA 336
A ++V YP + A
Sbjct: 93 TEAQQTLQQVATQYPGSDAARVA 115
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 813 AAKIHREAAE-----REEQQNR----QRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 863
A + E REEQ+ R + E+A++ EE + ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEK 133
Query: 864 EQKRLRQQEEHFQR 877
+ R ++ F +
Sbjct: 134 NKINNRIADKAFYQ 147
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 814 AKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEE 873
A+ R E E + + ++ R L ++ +E ++ + +K +E ++Q E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWN--QRQSE 129
Query: 874 HFQRVKEQWRSSTPASKRRERSENDDD 900
++ K R + + + D D
Sbjct: 130 QVEKNKINNR----IADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 826 QQNRQRQEAARQAALAEEARRK-AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 884
Q +R QE E+ RK EEQ+K RL++ + + ++++WR
Sbjct: 76 QADRLTQEP--------ESIRKWREEQRK-------------RLQELDAASKVMEQEWRE 114
Query: 885 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 929
+ + + ++ SE+ + R DK+ + +
Sbjct: 115 -------KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 51/324 (15%), Positives = 110/324 (33%), Gaps = 37/324 (11%)
Query: 705 AQILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNYTL--RFDAGVAMQKFSASTLQKT 760
I +L R Y + + ++ R + H A T R A + +QKF +
Sbjct: 776 KTIRGWLMRKKYM--RMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ--RMYVV 831
Query: 761 RRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREA 820
R+ +R L+ +R + N + E K ++ + L HR
Sbjct: 832 RKRYQCMRDATIALQALLRGY----LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 821 AEREEQQNRQRQEAARQA--ALAEEARR-KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 877
Q R+ A++ L EAR + ++ LE K+ Q+++ +Q + ++
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN-KIMQLQRKIDEQNKEYKS 946
Query: 878 VKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMD 937
+ E+ + +++ +R R + K + + E A+
Sbjct: 947 LLEKMN------NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR--- 997
Query: 938 YREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRR 997
+E + + E + + + + ++ E + RR
Sbjct: 998 -KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE-----------LNRR 1045
Query: 998 RALSESDDDEPFERQLRDNTDELQ 1021
+ E E++L + T +L+
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLE 1069
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 21/188 (11%), Positives = 42/188 (22%), Gaps = 22/188 (11%)
Query: 23 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL--------------- 67
+ + DV A+L ++ +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 68 --ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 125
Y W + L+ + Q +L D N A +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 126 VEFNRGRYSDSLEFYKRALQVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQ 180
V + + L++ + L+ + L + Q ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 181 LDPENVEA 188
L P N A
Sbjct: 269 LVPHNESA 276
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 14/142 (9%), Positives = 41/142 (28%), Gaps = 4/142 (2%)
Query: 257 PTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 315
++ S + D + Y A ++E K ++ ++ + L D
Sbjct: 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ 184
Query: 316 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
L +L N + + + + + + + K D R+ + ++
Sbjct: 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244
Query: 376 ISSDTGAALDAFKTARTLLKKA 397
++ + +
Sbjct: 245 SNTTGYNDRAVLEREVQYTLEM 266
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 12 NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 322
+ ++GD E A ++ +P YY +G KLGD++ AL N++
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 323 VLEIYPDN 330
+E+ PD+
Sbjct: 61 AIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 308 LKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
+ GD +AL E+ L+ P E +G+ Y +LG +KA + A +++P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 367 AF 368
Sbjct: 71 LQ 72
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
P + N KGDY +A +Y ++ + N P + Y KL +F+ A
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRN-PKDAKL-YSNRAACYTKLLEFQLA 69
Query: 317 LTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 373
L + E+ +++ P +K + KA ++ +KA +D +A
Sbjct: 70 LKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 374 LL 375
+
Sbjct: 127 CM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 70 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 129
+++ S ++ KG KG+ QA + ++ + + +A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 130 RGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
+ +L+ + +Q+ P+ R + KA +Q+AL LD EA
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKA--AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Query: 189 LVAL 192
Sbjct: 121 ADGY 124
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 273 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 332
GDY A Y ++ P + + LKL D+ A T K +E +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-- 98
Query: 333 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+KAL +LG++++A L++ ++P++
Sbjct: 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185
F G Y +L Y +AL + + + C KL KA +A++ D +
Sbjct: 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 186 VEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 231
V+AL + QA E G + + + +QR + P + L N
Sbjct: 99 VKALYRRS----QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318
++ L + K D++ A +Y + E++ P + V + GD+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTY-ITNQAAVYFEKGDYNKCRE 59
Query: 319 NFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 362
EK +E+ +N E + +G+ Y + + + A K+
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 311
PT N A Y KGDY K ++ E+ + + + Y +G K
Sbjct: 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKEE 93
Query: 312 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 360
++ A+ + K L + + LK ++A+++L++ ++
Sbjct: 94 KYKDAIHFYNKSLAEHRTP-DVLKKC----------QQAEKILKEQERL 131
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 149 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 185
R IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 276 YEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 329
Y K Y S +G +LK+ D++ A+ + + LEI P
Sbjct: 246 YTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Query: 330 NCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDA 365
N KAL + L + ++A L+KA +I P D
Sbjct: 306 NT---KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
+S + + ++ +Y KA Y ++ I P I+ G A
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIY-LSNRAAAYSASGQHEKA 64
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ E + P + LG + + A+E K + +
Sbjct: 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 259 KSHSYY-NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 317
+ Y N A +Y + G +EKA + ++ ++ + LG + + D++ A
Sbjct: 43 ANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP--KYSKAWSRLGLARFDMADYKGAK 99
Query: 318 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+EK +E + + L ++ E + A+ D
Sbjct: 100 EAYEKGIEAEGNGGSD-----AMKRGLETTKRKIEEANRGAEPPADDVDD 144
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148
+G +A+ E +A + L N L +A G++ + E + A V P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 149 SCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
A RLG L R+ + A++A+++ ++ +
Sbjct: 77 KYSKAWSRLG--LARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
F +G Y +++ Y + + P P + KLG+ +A Q Q+ L+
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNP-VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73
Query: 188 ALV--ALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 220
+ L A A G ++ + ++ E Y
Sbjct: 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 11/223 (4%)
Query: 59 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 118
+ + A QY ++S++ KG + AK ++A++ ++ +
Sbjct: 47 GHHPDIWYEAAQYLEQSSKL-------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99
Query: 119 AL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 177
L A E +R +Y Y R L + P + + + + R F++
Sbjct: 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159
Query: 178 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 237
A + V A+M+ ++ + + + Y + ++
Sbjct: 160 AREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 238 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKA 279
+ L E L + P KS + ++ S GD
Sbjct: 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 6e-04
Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 21/254 (8%)
Query: 170 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE------------ 217
+ A+++ L + + + A Q+++ + M + +
Sbjct: 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93
Query: 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277
+ + A++ ++ V + LA+ + PT + Y + +
Sbjct: 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIK 151
Query: 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337
+ + + ++ H L + D A FE L+ Y D E + A
Sbjct: 152 SGRMIFKKAREDARTRHHVYV-TAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAY 209
Query: 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTART 392
L + + L + + ++ ++ D + L K T
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269
Query: 393 LLKKAGEEVPIEVL 406
++ E +L
Sbjct: 270 AFREEYEGKETALL 283
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 31/278 (11%), Positives = 65/278 (23%), Gaps = 63/278 (22%)
Query: 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188
+ ++ ++ + +A +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 189 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 248
A EA K A + F GQ
Sbjct: 74 DEAGNTY----VEAYKCFKSGGNSVNAVDSL-------ENAIQIFTHRGQF--------- 113
Query: 249 ALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYY---MASVKEINKPHEFIFPYYGLG 304
++ + L + DY KA Y + +
Sbjct: 114 --------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 305 QVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKA 357
++ G + A + K+++ N + G + A L++
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 358 AKIDP-----RDAQAFIDLGELLISSDTGAALDAFKTA 390
DP R++ L + + D +
Sbjct: 226 QSEDPNFADSRESNFLKSLIDAVNEGD----SEQLSEH 259
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 6e-05
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 30/202 (14%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 320 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 379
E ++I+ GQ + + +I D D
Sbjct: 100 LENAIQIFTHR--------------GQFRRGANFKFELGEILENDLH------------D 133
Query: 380 TGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 438
A+D ++ A + + + G++ A + + + L
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 439 LDSKTKTYVIDASASMLQFKDM 460
K Y + L D
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDA 215
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 272 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331
S G+ + A Y ++K PH + Y K GD++ A + K +++ PD
Sbjct: 16 SVGNIDDALQCYSEAIK--LDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW- 71
Query: 332 ETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374
K L + E+A+ + K + + Q L +
Sbjct: 72 --GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-------GRYSDSLEFYK 141
KG L+ G ++ A + ++ D N L NR G Y + E
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYS------NRSAAYAKKGDYQKAYEDGC 62
Query: 142 RALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193
+ + + P R L + +A++ ++ L+ + N + L
Sbjct: 63 KTVDLKPDWGKGYSRKA--AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
P Y N + +Y KGDY+KA +V ++ ++ Y L F A
Sbjct: 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKP--DWGKGYSRKAAALEFLNRFEEA 91
Query: 317 LTNFEKVLEIYPDNCETLKAL 337
+E+ L+ +N + + L
Sbjct: 92 KRTYEEGLKHEANNPQLKEGL 112
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 2e-05
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTN 319
Y +A K DYE L + + + + + + G + +
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 320 FEKVLEIYPD-------NCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQ 366
FE++L+ + + + E++ + KA +I Q
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 367 AFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 408
+ GE L + + DA+K A E L N
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVN 281
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 273 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 332
KGDY A +Y +VK P I Y KL +F+ AL + + + +
Sbjct: 26 KGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80
Query: 333 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+K V + + KAQ A ++DP + +A
Sbjct: 81 -IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 74 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 133
+ + I+ KG KG+ A + ++ D +N +A +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 134 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 192
+L+ +++ IR C + + KA++A++ ALQ+DP N EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKA--ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 31/242 (12%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 798 KKINTHVEYCKHLLDAAKIHREAAERE------EQQNRQRQEAARQAALAEEARRKAEEQ 851
+ + ++ K A+ + E++ E+ Q + A AE +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 852 KKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 911
K + L + + R+ ++EE Q+++ + K +++ + ++++ E R+K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAE------KKKMQQQMLDLEEQLEEEEAARQK 973
Query: 912 GGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND 971
+ +K + + + E D++ ++ E + EE
Sbjct: 974 ----LQLEKVTADG-KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 972 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 1031
L + + E+ + + R E + E + D +++ + ++ E
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK-LEGESSDLHEQIAELQAQIAELK 1087
Query: 1032 HK 1033
+
Sbjct: 1088 AQ 1089
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 5e-05
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 1/145 (0%)
Query: 797 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 856
++ + +E + +AA H +E + R ++ + AE+AR++ E + +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 857 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 916
+ + + E + E + E + E+ +K R
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIET-EAELERVKKVREMELIYA 773
Query: 917 KKDKSSRSHYETEYAEADMMDYREE 941
+ + A + ++E
Sbjct: 774 RAQLELEVSKAQQLANVEAKKFKEM 798
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-04
Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 10/239 (4%)
Query: 745 AGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA----ASNLHLHGFDEKKI 800
A V F ++ + R + + + + L + D + +
Sbjct: 584 ASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSV 643
Query: 801 NTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRK 860
+ DA + + A +++ L +EAR + E QK +L++ +
Sbjct: 644 E---PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQK--ILDQSE 698
Query: 861 LEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDK 920
E +K L + E V+ + A R E + + + K + + + +
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Query: 921 SSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLE 979
R E E + E E A + + + + LA AG E
Sbjct: 759 LERVKKVRE-MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 272 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331
DYE A +Y ++ E+N P I+ Y L+ + AL + + +E+
Sbjct: 25 KAKDYENAIKFYSQAI-ELN-PSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
Query: 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374
+ + LG+ A K+ P D A + E
Sbjct: 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-05
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318
K+ + Y +K D+ A Y +K P + Y KL F A+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG-YSNRAAALAKLMSFPEAIA 59
Query: 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ K +E P+ + + + A E L A D
Sbjct: 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 364
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 365 AQAFIDLGELL 375
L L+
Sbjct: 65 LPGASQLRHLV 75
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 272 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 21 VGRKYPEAAACYGRAITR--NPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 77
Query: 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
+ LG +++ ++A L++A + F D
Sbjct: 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 272 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 331
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 16 VGRKYPEAAACYGRAIT--RNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 370
+ LG +++ ++A L++A + F D
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 43.5 bits (101), Expect = 3e-04
Identities = 35/366 (9%), Positives = 86/366 (23%), Gaps = 26/366 (7%)
Query: 2 QREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREK 61
++ +Q +V+ R++ + + ++R T I +
Sbjct: 201 VNKFEEQQRVQYIRKLYKT--LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQY 258
Query: 62 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 121
L + N + + P T + L K + ++ L
Sbjct: 259 MNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE 318
Query: 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 181
+ R Y Y +A Q P K + + Q
Sbjct: 319 LSDDLHKARMTYV-----YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373
Query: 182 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241
P + +L+ K+ C ++
Sbjct: 374 IPNSAVLAFSLSEQYELNT----------KIPEIETTILSCIDRIHLDLAALM------- 416
Query: 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 301
E A+ ++ Y + + + + I+
Sbjct: 417 -EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475
Query: 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 361
+ + D ++A E L+ + + E + + + + + + L +
Sbjct: 476 AYIEYHIS-KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534
Query: 362 PRDAQA 367
Sbjct: 535 SDSHLL 540
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 366
L+ G+ AL + + + + A ++ Q E AQELL +
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76
Query: 367 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 422
+ I EL + L + A E+ + V + + G E A
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQEL-----AANPDNFELACELAVQYNQVGRDEEA 127
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-04
Identities = 32/244 (13%), Positives = 73/244 (29%), Gaps = 11/244 (4%)
Query: 168 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 227
LG + A Q ++ + L M+ + E+ +
Sbjct: 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYF 325
Query: 228 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 287
A++ ++ V + LA+ + PT + Y + + + + +
Sbjct: 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIKSGRMIFKKAR 383
Query: 288 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 347
++ + ++ L + D A FE L+ Y D E + A L +
Sbjct: 384 EDA-RTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441
Query: 348 EKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTARTLLKKAGEEVP 402
+ L + + ++ ++ D + L K T ++ E
Sbjct: 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 501
Query: 403 IEVL 406
+L
Sbjct: 502 TALL 505
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1043 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-26 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-26 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-23 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-20 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-14 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-12 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 4e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.001 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 6e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 1e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.002 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.003 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 6e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.003 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-05 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 3e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.002 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 5e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 7e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 6e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 1e-27
Identities = 64/440 (14%), Positives = 134/440 (30%), Gaps = 61/440 (13%)
Query: 120 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 179
+ A E+ G + + + + P G + L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAI 60
Query: 180 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 239
+ +P EA L + + + + R + + L
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 240 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 299
+ Y + + + +K I F
Sbjct: 121 VQAYV---------SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
+ P A +L + A ++A E P + N+ EKG
Sbjct: 232 LSPNHAVVHGNLACVYYE------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285
Query: 418 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 477
A + AL
Sbjct: 286 SVAEAEDCYNTALRL-------------------------------------------CP 302
Query: 478 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 537
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 538 NEALKVNGKYPNALSMLGDL 557
EA++++ + +A S +G+
Sbjct: 363 KEAIRISPTFADAYSNMGNT 382
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (275), Expect = 2e-26
Identities = 51/239 (21%), Positives = 98/239 (41%), Gaps = 10/239 (4%)
Query: 137 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196
Y +A++ P+ A +G G++ A F++A+ LDP ++A + L +
Sbjct: 155 KACYLKAIETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Query: 197 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 256
+A + + RA + P A+ LA ++ G L A+ +
Sbjct: 214 KEARI---FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---Q 267
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
P +Y NLA + KG +A Y + L ++ + G+ A
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYN---TALRLCPTHADSLNNLANIKREQGNIEEA 324
Query: 317 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
+ + K LE++P+ L + Q G++++A ++A +I P A A+ ++G L
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (270), Expect = 8e-26
Identities = 62/373 (16%), Positives = 122/373 (32%), Gaps = 44/373 (11%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
G+ E A + + DN LL + + F R S F A++ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 150 CPGA-IRLGIGL-----------------------------CRYKLGQLGKARQAFQRAL 179
A LG L G A Q +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 180 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 239
N + + + + + +A E P A+A + L F G+
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 240 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 299
+L E A+ + P +Y NL +++A Y+ + ++
Sbjct: 186 WLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYL---RALSLSPNHAVV 239
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 359
+ L V + G A+ + + +E+ P + L + + G + +A++ A +
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 360 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 417
+ P A + +L + + A L +KA E P +N+ + ++G
Sbjct: 300 LCPTHADSLNNLANIKRE------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 418 EFESAHQSFKDAL 430
+ + A +K+A+
Sbjct: 354 KLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (253), Expect = 1e-23
Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 40/403 (9%)
Query: 303 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 363 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 422
A+A+ +LG + LK + I + + +G ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 423 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH---------- 472
+ + + L + K A K ++ F ++
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 473 -----------VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 521
V L N + NL +L++ A Y L ++ + LA
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 522 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 581
+ + + L+I+ A+++ +P+A L + + +A++ + A
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA------- 297
Query: 582 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641
L A N K E ++E+A LY + + A + VL
Sbjct: 298 -------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 642 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 684
++G+ + + + + D + N+ + +
Sbjct: 351 QQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.4 bits (228), Expect = 2e-20
Identities = 65/420 (15%), Positives = 141/420 (33%), Gaps = 38/420 (9%)
Query: 334 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 393
L H Q G E A+ + + +P + + L + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF------QCRRLDRSAHF 55
Query: 394 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 451
A ++ P E +N+G ++ E+G+ + A + ++ AL +
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---------FIDGYIN 106
Query: 452 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 511
+ + + + ++ + V +L LL+ + A Y +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 512 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 571
++ A+ L + A+ + L+I +A+ ++ + +A LG++ + + +A +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 572 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 631
A A + E ++ A + Y R I
Sbjct: 227 LRALS--------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 632 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 691
A L EKG ++D + + D NLA++ QGN A+++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR-----LCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 692 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
Y+ L + A LA + + Q+ AI ++P+ + G +++
Sbjct: 328 YRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.2 bits (215), Expect = 3e-18
Identities = 31/241 (12%), Positives = 62/241 (25%), Gaps = 16/241 (6%)
Query: 136 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195
S ++ ++A + + +LG L + +Q+ L D E +
Sbjct: 5 SAQYLRQAEVLKADMTDS-KLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL 60
Query: 196 DLQANEAAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 254
A + +G K + A +L F QL + V N
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF------YTQLLQELCTVFN 114
Query: 255 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 314
L + + +S LG +
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQHC---LVHLGDIARYRNQTS 169
Query: 315 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374
A + + ++ P N + L + G ++ + A +L +
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 375 L 375
L
Sbjct: 230 L 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (160), Expect = 1e-11
Identities = 32/363 (8%), Positives = 87/363 (23%), Gaps = 60/363 (16%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
+ QY +A + + +G ++ ++ ++
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL------------------------- 39
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
Y++ L ++ L + Q +
Sbjct: 40 ------------YQKMLVTDLEYALDKKVEQDLWNHAFKNQI---TTLQGQAKNRANPNR 84
Query: 188 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 247
+ V + + + ++++ F + C + + L + +
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 248 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 307
++ + H +L + +A YY PY L +
Sbjct: 145 SSCSYICQ-----HCLVHLGDIARYRNQTSQAESYYR---HAAQLVPSNGQPYNQLAILA 196
Query: 308 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
GD + + + + + + L + + K +A
Sbjct: 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE----VKTKWGVSDFIKA 252
Query: 368 FIDL-GELLISSDTGAALDAFKTARTLLKKAGEEVPIE-------VLNNIGVIHFEKGEF 419
FI G + +S + K+ + + N+ +H +
Sbjct: 253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFS 312
Query: 420 ESA 422
Sbjct: 313 NET 315
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (159), Expect = 1e-11
Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 14/222 (6%)
Query: 170 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 229
++ Q ++A L + ++ + A + + Q+ A+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ------DLYQKMLVTDLEYALDKKVE 57
Query: 230 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 289
+ + L A N ++ + + G Y +
Sbjct: 58 Q-DLWNHAFKNQITTLQGQAKNRANPNRSEVQANL-SLFLEAASGFYTQLLQELC---TV 112
Query: 290 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 349
N LG + K + + L LG I Q +
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQ 170
Query: 350 AQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTA 390
A+ R AA++ P + Q + L L S D + + +
Sbjct: 171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 3e-07
Identities = 34/339 (10%), Positives = 91/339 (26%), Gaps = 38/339 (11%)
Query: 349 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 408
++ + LR+A + + + E+ S A D ++ + + +E
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSR--QALQDLYQKMLVTDLEYALDKKVEQD-- 59
Query: 409 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 468
F++ + + + ++ V + L+ +
Sbjct: 60 -----LWNHAFKNQITTLQGQ------AKNRANPNRSEVQANLSLFLEAASGFYTQLLQE 108
Query: 469 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 528
+ L + + T A + L IA+ RN
Sbjct: 109 LCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRN 166
Query: 529 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 588
+ A ++ + L L D + + + ++
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS------------IA 214
Query: 589 LGNWNYFAALRN-----EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 643
+ + AA N K + + + + ++ ++Y +
Sbjct: 215 VKF-PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY--LSKSLEKLSP 271
Query: 644 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 682
+ + + + + A S + V INL ++ +
Sbjct: 272 LREKLEEQFKELLFQKAFNSQQLVHVTV-INLFQLHHLR 309
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 3e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 48 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 107
+ LG I KQ + + + V G + + + QA S ++
Sbjct: 123 SSQLGIISNKQTHTSA----IVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYR 176
Query: 108 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 153
+ N A + ++G + ++ +Y R++ V P A
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.1 bits (178), Expect = 3e-14
Identities = 31/260 (11%), Positives = 67/260 (25%), Gaps = 13/260 (5%)
Query: 114 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKAR 172
R+ + L + E + L F + L+V+P G L R +
Sbjct: 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 173 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 232
+ R L+ D N + QA + + + +Y +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCL 187
Query: 233 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 292
+ L ++ +++ +Y + +
Sbjct: 188 LPQLHPQ-------PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH---RWLLG 237
Query: 293 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 352
E +F + L + +++ T+ L L ++ +
Sbjct: 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297
Query: 353 LLRKAAKIDPRDAQAFIDLG 372
+DP A DL
Sbjct: 298 YFSTLKAVDPMRAAYLDDLR 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 3e-12
Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 19/316 (6%)
Query: 72 YNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
Y+K + + + + +G L +G++ A F+ ++ D ++ A +
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
+ ++ +R L++ P A+ + +A + + L+ P
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAH 122
Query: 188 ALVALAV-----MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 242
+ + G E++ A+ L+ + ++
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF-LAAVRLDPTSIDPDVQCGLGVL 181
Query: 243 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIF 298
L+ + N ++ G G +V + E +I
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241
Query: 299 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----HIYVQLGQIEKAQELL 354
Y LG + LG R A+ +F + L + + G +I+ L
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
Query: 355 RKAAKIDPRDAQAFID 370
D RD +
Sbjct: 302 DAYGAADARDLSTLLT 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (148), Expect = 1e-10
Identities = 53/291 (18%), Positives = 103/291 (35%), Gaps = 23/291 (7%)
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218
GL R + G L A F+ A+Q DP+++EA L + + + ++R E+
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ---ELLAISALRRCLEL 82
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP------------TKSHSYYNL 266
P AL LA F ++ L T +
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 267 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 326
S S + + ++A+V ++ GLG + G++ A+ F L +
Sbjct: 143 LGSLLSDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 327 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALD 385
P++ LG Q E+A R+A ++ P ++ +LG I+ A++
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 386 AFKTARTLLKKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDAL 430
F A + +K+ + + + + G+ ++ + L
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 46/294 (15%), Positives = 82/294 (27%), Gaps = 24/294 (8%)
Query: 275 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 334
Y+K + E P + G +L+ GD +A+ FE ++ P + E
Sbjct: 3 TYDKGYQF------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 56
Query: 335 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG-----------AA 383
+ LG + Q A LR+ ++ P + A + L +
Sbjct: 57 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116
Query: 384 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 443
A+ T ++ + I F + F A+ D +
Sbjct: 117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176
Query: 444 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 503
V+ + N L L N + E + Y
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------Y 229
Query: 504 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557
R L Y+ + L + ++E EAL + K G +
Sbjct: 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 10/279 (3%)
Query: 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 535
P F Q D A +L+ + + +++A+ L L+I
Sbjct: 15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 74
Query: 536 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNY 594
+ L++ AL L +A E R T G
Sbjct: 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 595 FAALRNEKRAPKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDL 652
L + + KEL+ + + + G GV+ G++D + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 653 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 712
FT + + A + + L
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLG 247
Query: 713 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 751
+ ++ + L A+++ + R + G +
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.0 bits (150), Expect = 6e-11
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 304 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 363
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 364 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 423
L L+ ++ K GE + + ++E
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 119
Query: 424 QSFKDAL 430
+
Sbjct: 120 ELALQIE 126
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/130 (11%), Positives = 36/130 (27%)
Query: 68 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 127
A + +A + + S +LL G+ E+A ++ + +P +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 128 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 187
D + A + + L + + + +L E
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 188 ALVALAVMDL 197
+ D+
Sbjct: 135 LANDTSFSDV 144
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%)
Query: 90 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 149
+ L++G+++QA ++A + + G + + E +++++ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 150 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 209
L + + A+ A + + E + + + + + + +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS--- 119
Query: 210 EKMQRAFEIYPYCAMALNYLA 230
E + E+ N +
Sbjct: 120 ELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 47.3 bits (112), Expect = 4e-06
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 7/138 (5%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
P + + GD+E+A M S+K P ++ L + +
Sbjct: 27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE-YLPGASQLRHLVKAAQARKDF 83
Query: 317 LTNFEKVLEI-YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-EL 374
+ + ++ + E+ EL + ++ D
Sbjct: 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 143
Query: 375 LISSD--TGAALDAFKTA 390
+ D G ++ F TA
Sbjct: 144 VRDIDDRLGGYIELFSTA 161
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.9 bits (103), Expect = 5e-05
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 10/137 (7%)
Query: 267 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 326
++ S+G ++A + ++K P + ++ GDF A + +++
Sbjct: 3 WKNALSEGQLQQALELLIEAIKA--SP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 327 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALD 385
+P+ L H+ + + A + + + L
Sbjct: 60 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS------MVSQ 113
Query: 386 AFKTARTLLKKAGEEVP 402
++ L + E
Sbjct: 114 DYEQVSELALQIEELRQ 130
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.3 bits (99), Expect = 1e-04
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 607 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 666
L L++A EL I + + +L G F+ + + Q +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP----- 61
Query: 667 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 726
+ L H+ A + + N + L ++ ++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 727 SLLRAIHLAPSNYTLRFDAGVA 748
L+ L L D +
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.8 bits (95), Expect = 6e-04
Identities = 10/138 (7%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Query: 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 264
+++ +E + A + P A + G ++ ++ + P
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGAS 68
Query: 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 324
L + + + + + D+ ++
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTK--SLVSFNLSMVSQDYEQVSELALQIE 126
Query: 325 EIYPDNCETLKALGHIYV 342
E+ + V
Sbjct: 127 ELRQEKGFLANDTSFSDV 144
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 61.1 bits (146), Expect = 2e-10
Identities = 52/321 (16%), Positives = 91/321 (28%), Gaps = 33/321 (10%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRA 143
+ Q+ + G ++A K+ LE A V +G + SL ++
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 144 LQVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--------ENVEALV 190
Q+ + + G L A + ++A QL + +
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 191 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE------Q 244
A + Y + L +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 245 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGL 303
L H S++ + GD A + + K E H + +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 304 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKA 357
+ Q+ LG+F A E++ E D L L +Y Q G+ AQ +L A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 358 AKIDPR--DAQAFIDLGELLI 376
K+ R F+ GE +
Sbjct: 318 LKLANRTGFISHFVIEGEAMA 338
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (94), Expect = 6e-04
Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 21/285 (7%)
Query: 476 PWNKVTVLFNLARLLEQIHDTVAASVLYRLIL------FKYQDYVDAYLRLAAIAKARNN 529
++++ L +L + + L + + + + ++ + I A+
Sbjct: 47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106
Query: 530 LQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGK 581
LQ + E +A ++ + + + L +A+ + R+ +
Sbjct: 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166
Query: 582 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641
L +L + + + L A +
Sbjct: 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLN--RLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 642 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 701
G + + + + W N+A G F A + +
Sbjct: 225 MTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283
Query: 702 NTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 742
+ LL L + +++A + D ++ LL A+ LA +
Sbjct: 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 328
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 59.8 bits (143), Expect = 3e-10
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 7/210 (3%)
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217
G+ LG AR F +AL + P+ E L + QA E E
Sbjct: 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLE 99
Query: 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277
+ P A ++ G+ L + P L + + +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY---QDDPNDPFRSLWLYLAEQKLDEKQ 156
Query: 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337
+ K + + + LG + + + + ET L
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYL 215
Query: 338 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
G Y+ LG ++ A L + A + +
Sbjct: 216 GKYYLSLGDLDSATALFKLAVANNVHNFVE 245
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 8/249 (3%)
Query: 98 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 157
+ + D + L + + + G + + + +AL + P P
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY- 76
Query: 158 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 217
+G+ + G A +AF L+LDP L A + Q
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNY-------AHLNRGIALYYGGRDKLAQDDLL 129
Query: 218 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 277
+ + + + Q +Q E + + + + +
Sbjct: 130 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 189
Query: 278 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 337
+ + + LG+ L LGD SA F+ + N +
Sbjct: 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
Query: 338 GHIYVQLGQ 346
LGQ
Sbjct: 250 LLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (91), Expect = 0.001
Identities = 33/250 (13%), Positives = 63/250 (25%), Gaps = 19/250 (7%)
Query: 316 ALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 371
L E++L + + L G +Y LG A+ +A I P + F L
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 77
Query: 372 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 431
G L + A + L N G+ + G + A
Sbjct: 78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAH----LNRGIALYYGGRDKLAQDDLLAFYQ 133
Query: 432 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 491
D + + + + Q + + ++ +
Sbjct: 134 -------DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186
Query: 492 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----Y 547
+ + + L + +L + L A+ N +
Sbjct: 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246
Query: 548 PNALSMLGDL 557
AL L L
Sbjct: 247 RYALLELSLL 256
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 3e-08
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 28/169 (16%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
S +N K D++ A + + PH I + +G + L + A F
Sbjct: 7 SLWNEGVLAADKKDWKGALDAF----SAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 60
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 381
+ + G +Y Q + + A + L++A +
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI-------------- 106
Query: 382 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
+L + EVL NI ++ +K E++ A + A
Sbjct: 107 --------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 5e-07
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 257 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 316
S +N+ Y + + A + IN+ Y+ G + + + A
Sbjct: 33 DPHSRICFNIGCMYTILKNMTE---AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 317 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 360
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 361 DPRDAQAFID 370
+ ID
Sbjct: 150 KSEPRHSKID 159
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
++ + A ++ + G + + +A AF + D+ A
Sbjct: 17 DKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 73
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQ---------------VHPSCPGAIRLGIGLCRYKL 165
+ + + +Y +++ K AL + I K
Sbjct: 74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133
Query: 166 GQLGKARQAFQRALQLDPENVEALVALAVMDLQ 198
+ KA + A + E + + A+ +
Sbjct: 134 EEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 6e-06
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFRSALT 318
+ L + +++ DY L+ +++ + + L + GD AL
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 319 NFEKVLEIYPDNCETLKALGHIYVQLGQ 346
+K+LE+ P++ L + + +
Sbjct: 68 LTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 300 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 352
+ LG+V D+ E+ L D L L + Q G ++KA
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 353 LLRKAAKIDPRDAQAFIDLGEL 374
L +K ++DP +A +L
Sbjct: 68 LTKKLLELDPEHQRANGNLKYF 89
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 31/271 (11%), Positives = 69/271 (25%), Gaps = 39/271 (14%)
Query: 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------D 182
+ ++ ++ + +A ++ +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQAATIY---------------RLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 183 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHF 240
E V + +E + F N+ H
Sbjct: 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133
Query: 241 LVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYY----MASVKEIN 291
+ + LA + + A G Y +A Y +S+
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 292 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQ--L 344
+ G QL D +A ++ P+ LK+L +
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 345 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
Q+ + + ++D + E +
Sbjct: 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESI 284
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.6 bits (91), Expect = 0.002
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 14/246 (5%)
Query: 509 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 562
K+++ D ++ A I + R L L+ + +A K N
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 563 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 622
+ V A ++ A + + + + L N+ E A E Y +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ- 150
Query: 623 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYF 680
+ + A GQ+ + D+++++ +++ G+ Q D ++
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 681 AQGNFALAMKMYQNCLRKFYYNTDAQ-----ILLYLARTHYEAEQWQDCKKSLLRAIHLA 735
A + A + Q + D++ L A ++EQ + K + L
Sbjct: 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
Query: 736 PSNYTL 741
T+
Sbjct: 271 KWKITI 276
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 0.003
Identities = 21/187 (11%), Positives = 55/187 (29%), Gaps = 19/187 (10%)
Query: 263 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 319
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 320 FEKVLEIYPDNCET-------LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372
E ++I+ + + + L KA + A + +D +
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159
Query: 373 ELLISSDTGAALDAFKTARTLLKKAGEEVPI---------EVLNNIGVIHFEKGEFESAH 423
+ +D A + A + K + + G+ + +A
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219
Query: 424 QSFKDAL 430
++ ++
Sbjct: 220 RTLQEGQ 226
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 3/117 (2%)
Query: 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318
++ A Y DYE A +Y +++ + L+ + AL
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---LAYLRTECYGYALG 65
Query: 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375
+ + +E+ + + LG+ A K+ P D A + E
Sbjct: 66 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 262 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321
Y +A Y + I + Y LK+ AL +
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYG---RAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 376
+ LE+ + + LG +++ ++A L++A + F D +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 7/189 (3%)
Query: 159 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 218
G + + +A + RA+ +P A+ L+ + + + +RA E+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALEL 67
Query: 219 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 278
A +L + + A ++ + ++ + S ++
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKR 124
Query: 279 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 338
+ + ++ H ++ + + +L + + E I
Sbjct: 125 WNSIEERRIHQESELHSYL-TRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 339 HIYVQLGQI 347
+ ++
Sbjct: 184 KYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.9 bits (92), Expect = 6e-04
Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 11/199 (5%)
Query: 332 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 391
+ LK G+ + +A +A +P A + + + A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 392 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 451
L ++ +G E ++ A + + A L + + D
Sbjct: 65 LELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYS-------LAKEQRLNFGDDI 113
Query: 452 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 511
S L+ + ++ E H E + A ++ + +
Sbjct: 114 PSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173
Query: 512 DYVDAYLRLAAIAKARNNL 530
+ + L
Sbjct: 174 QQACIEAKHDKYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (86), Expect = 0.003
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 61 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 120
+ A Y +A + + + L + EQA + + LE D +V A
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 121 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 180
+ Y +++ +RA + I L A++ +++
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI------PSALRIAKKKRWNSIE 129
Query: 181 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 220
+ E+ + + L A E + +E+ QR E +
Sbjct: 130 ERRIHQESELHSYLTRLIAAER---ERELEECQRNHEGHE 166
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 265 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 324
+ S D K + + + F Y D R + E++L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 325 EI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 367
+ + + L +L + EKA + +R + +P++ QA
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 93 LLAKGEVEQASSAFKIVLEADRDNVPALLG---QACVEFNRGRYSDSLEFYKRALQVHPS 149
L++ ++ + F+ A + + + L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 150 CPGAIRL-GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196
+ + + Y+L + KA + + LQ +P+N +A ++D
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 1/121 (0%)
Query: 226 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 285
+ + N E+ ++ A + Y D + G+ +
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60
Query: 286 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 345
+ E + L +L ++ AL +L+ P N + + I +
Sbjct: 61 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
Query: 346 Q 346
+
Sbjct: 121 K 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 2/92 (2%)
Query: 163 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 222
+ L K + FQ + A ++ IRKG+ ++
Sbjct: 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69
Query: 223 AM--ALNYLANHFFFTGQHFLVEQLTETALAV 252
+ YLA + ++ + L
Sbjct: 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.002
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 341 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGE 399
V + + K ++ + + L+ LL K +
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 400 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 430
E + + + V ++ E+E A + + L
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 99
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.003
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 640 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 699
L + F + A S S Q + + + + + L K
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQF--EYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 700 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 738
+ YLA +Y ++++ K + + P N
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 105
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.4 bits (106), Expect = 2e-05
Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 27/247 (10%)
Query: 140 YKRALQVHPSCP-------------GAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN 185
Y++ L V P + G +A ++RA+ L +N
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 186 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 245
+ A A + + + ++ +I P +
Sbjct: 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMI 156
Query: 246 TETALAVTNHGPTKSHSYYNLAR-SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 304
+ A T+ H Y A Y+ D A + +K+ E++ Y
Sbjct: 157 FKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY- 212
Query: 305 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKI 360
L + + FE+VL E + ++ G + ++ ++
Sbjct: 213 --LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
Query: 361 DPRDAQA 367
+ +
Sbjct: 271 FREEYEG 277
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 19/255 (7%)
Query: 86 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL-LGQACVEFNRGRYSDSLEFYKRAL 144
KG + AK ++A++ ++ + L A E +R +Y Y R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 145 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 204
+ P + + + + R F++A + V A+M+ ++
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--D 184
Query: 205 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 264
+ + + Y + ++ + L E L + P KS +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 265 NLARSYHSK-GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 323
++ S GD S+ ++ K F + G + L + K
Sbjct: 245 ARFLAFESNIGDLA--------SILKVEKRRFTAFR-------EEYEGKETALLVDRYKF 289
Query: 324 LEIYPDNCETLKALG 338
+++YP + LKALG
Sbjct: 290 MDLYPCSASELKALG 304
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 42.6 bits (99), Expect = 5e-05
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 230 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 289
A + +L + + ++ NLA Y +Y K K
Sbjct: 34 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTK---AVECCDKA 90
Query: 290 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 349
+ Y G+ QL + +F SA +FEKVLE+ P N + + + +
Sbjct: 91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150
Query: 350 AQE-----LLRKAAKID 361
+ +K A+ D
Sbjct: 151 RDRRTYANMFKKFAEQD 167
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 37.6 bits (86), Expect = 0.002
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF------------IFPYYGLGQV 306
++ Y G Y +A + Y V + + + + L
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 307 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 366
LKL ++ A+ +K L + N + L G + + + E A+ K +++P++
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 367 AFIDLGELL 375
A + +
Sbjct: 134 ARLQIFMCQ 142
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 6e-05
Identities = 25/278 (8%), Positives = 75/278 (26%), Gaps = 12/278 (4%)
Query: 324 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS--SDTG 381
+ + + + + E+A +L R A +++ + + LL S D
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 382 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 441
++ K +V ++ V+ + + D +
Sbjct: 96 EEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIAD--ILNQDAKNYHA 148
Query: 442 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 501
+ + + + + D + + + V+ N ++
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208
Query: 502 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL--EL 559
+I + + + ++ L+ + P ++ L D+ ++
Sbjct: 209 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268
Query: 560 KNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFA 596
+ ++ A + T+ W Y
Sbjct: 269 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 149 SCPGA------IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 185
IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 5e-04
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFR 314
++ L + K D++ A +Y + + + Y+ G
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 315 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 362
A+ + E Y + +G+ Y + + + A K+
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 175 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 234
F +D ++V+ ++ ++ + + A + Y +
Sbjct: 9 FPEDADVDLKDVDKILLIS---EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE 65
Query: 235 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 294
L P N+ D++ + ++ +
Sbjct: 66 DADGAKL--------------QPVALSCVLNIGACKLKMSDWQG---AVDSCLEALEIDP 108
Query: 295 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 351
Y Q L ++ AL + +K EI P++ L + ++ + +
Sbjct: 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 247 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------- 299
+ L + S N+ ++ ++E A Y ++ +
Sbjct: 14 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73
Query: 300 ------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 353
+G +LK+ D++ A+ + + LEI P N + L + L + ++A
Sbjct: 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133
Query: 354 LRKAAKIDPRDAQAFIDLGELL 375
L+KA +I P D +L ++
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVK 155
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-------------IFPYYGLGQ 305
+ + K + +A + Y ++ E+ I L
Sbjct: 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 75
Query: 306 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 365
K D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135
Query: 366 QAFIDLGELL 375
+
Sbjct: 136 DIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 231 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 290
+ F+ + + + + + NLA Y+ DY KA + +K
Sbjct: 38 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97
Query: 291 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 349
+ ++ + G A N K + P+N + + +L + K
Sbjct: 98 KNNVKALYKLG---VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 9e-04
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 148
KG L+ G ++ A + ++ D N ++ +G Y + E + + + P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 149 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 193
L + +A++ ++ L+ + N + L
Sbjct: 69 DWGK-GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 3/116 (2%)
Query: 259 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 318
+ + S G+ + A Y + I Y K GD++ A
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYS---EAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 58
Query: 319 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374
+ K +++ PD + L + E+A+ + K + + Q L +
Sbjct: 59 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1043 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.91 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.87 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.83 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.73 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.6 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.22 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.15 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.12 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.12 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.84 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.59 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.55 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.42 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.87 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.82 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.29 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.91 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-38 Score=275.77 Aligned_cols=290 Identities=20% Similarity=0.281 Sum_probs=119.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999998399989999999999839999889999899999809939999999999984999905788759999998099
Q 001618 88 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 167 (1043)
Q Consensus 88 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 167 (1043)
.+|..++..|+|++|+..|+++++.+|+++.++..+|.+++..|++++|+..|++++..+|.+ ..++..+|.++..+|+
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCC
T ss_conf 999999986999999999999998689989999999999998699999999999999859998-9999999999642000
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98999999999952988699999999999981007749999999999998398849999999999996099899999999
Q 001618 168 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 247 (1043)
Q Consensus 168 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (1043)
+++|+..+..++...|.................. ...+...........+................+....+...+.
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 2222222221211222222222222222222222---2222222111222222222222222222211000135678888
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99850589987338999999999972999999999999998408999874558989999998299799999999999879
Q 001618 248 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 327 (1043)
Q Consensus 248 ~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 327 (1043)
..+... |....++..+|..+...|+++.|...+.+++. ..|....++..+|.++...|++++|+..+.++....
T Consensus 160 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 233 (388)
T d1w3ba_ 160 KAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHCCC---CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 740258---61068998636301024719999999999998---494649999997155220052999999999857775
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCHHHHHHHH
Q ss_conf 996999999999999729989999999999972999999999999999-029988999999
Q 001618 328 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF 387 (1043)
Q Consensus 328 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~ 387 (1043)
|.....+..+|.++...|++++|+..|+++++.+|+++.++..++.++ ..+++.+|+..+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 294 (388)
T d1w3ba_ 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 5479999999999998789999999999999849998999999999999748799999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-38 Score=274.51 Aligned_cols=380 Identities=20% Similarity=0.254 Sum_probs=232.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCH
Q ss_conf 89999998299799999999999879996999999999999729989999999999972999999999999999-02998
Q 001618 302 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 380 (1043)
Q Consensus 302 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~ 380 (1043)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++ ..|++
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999998699999999999999868998999999999999869999999999999985999899999999996420002
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999988861999869999999999998299899999999997020223211345520353445667776566
Q 001618 381 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 460 (1043)
Q Consensus 381 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (1043)
++|+..+..+....+. ...............+....+.........
T Consensus 84 ~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 129 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQ----------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-----------------------------
T ss_pred CCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------------------------
T ss_conf 2222222212112222-----222222222222222222222222111222-----------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 66542103788777898406888769999995599278999999999868690999999999999839936899999999
Q 001618 461 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 540 (1043)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (1043)
..+................+....+...+...+...|....++..++..+...++++.|...+.++
T Consensus 130 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 195 (388)
T d1w3ba_ 130 --------------YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp --------------HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred --------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf --------------222222222222222211000135678888740258610689986363010247199999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98769995799998778610365689999999953138987769999756299999773101480688665999999999
Q 001618 541 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 620 (1043)
Q Consensus 541 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 620 (1043)
+..+|+++.++..+|.++...|++++|+..+.++....+. ....+..+|.+ |... +++++|+..|+
T Consensus 196 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~ 261 (388)
T d1w3ba_ 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV-YYEQ------------GLIDLAIDTYR 261 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHC------------CCHHHHHHHHH
T ss_conf 9849464999999715522005299999999985777554-79999999999-9987------------89999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 99800855099997769999822990479999999999834898778615897699999970698899999999998852
Q 001618 621 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 700 (1043)
Q Consensus 621 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 700 (1043)
++++.+|+++.++..+|.++...|++.+|+..|+.+....| ....++..+|.++...|++++|+..|+++++.
T Consensus 262 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 334 (388)
T d1w3ba_ 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEV-- 334 (388)
T ss_dssp HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
T ss_conf 99984999899999999999974879999999986540487-----30010157999999878999999999999986--
Q ss_pred CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 89999999999999986201999999999999839998203458999989
Q 001618 701 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 750 (1043)
Q Consensus 701 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~la~~~~ 750 (1043)
.|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.+|.
T Consensus 335 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 88989999999999998599999999999999709998999999999999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.8e-26 Score=189.98 Aligned_cols=254 Identities=16% Similarity=0.154 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 92259999999998399989999999999839999889999899999809939999999999984999905788759999
Q 001618 82 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 161 (1043)
Q Consensus 82 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 161 (1043)
+...++.+|..++..|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|.+++..+|++ ...+..+|.+
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 96 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-QTALMALAVS 96 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCC
T ss_conf 539999999999985999999999999998689989999999999998377588999998510022222-2222222222
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99809998999999999952988699999999999981007749999999999998398849999999999996099899
Q 001618 162 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 241 (1043)
Q Consensus 162 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 241 (1043)
+...|++++|+..+.+++...|................+ .
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~------------------ 136 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG----------------------L------------------ 136 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------------------------------
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCC----------------------C------------------
T ss_conf 222221121110002677736106788876640000000----------------------1------------------
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999850589987338999999999972999999999999998408999874558989999998299799999999
Q 001618 242 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 321 (1043)
Q Consensus 242 A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 321 (1043)
.........+...+.+.+|...|.+++...+. .....++..+|.++...|++++|+..|+
T Consensus 137 -------------------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 196 (323)
T d1fcha_ 137 -------------------GPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFT 196 (323)
T ss_dssp -----------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf -------------------00001478888765799999999999997130-1222111036888888887755002111
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999879996999999999999729989999999999972999999999999999-029988999999999998886
Q 001618 322 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 396 (1043)
Q Consensus 322 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 396 (1043)
+++...|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++ ..|++++|+..|.+++.+.|.
T Consensus 197 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 272 (323)
T d1fcha_ 197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272 (323)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 2222222221110133301221111013788877899884324999999999999878999999999999970975
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.5e-26 Score=189.24 Aligned_cols=262 Identities=15% Similarity=0.116 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 06888769999995599278999999999868690999999999999839936899999999987699957999987786
Q 001618 479 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 558 (1043)
Q Consensus 479 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (1043)
.....+..|..+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.++.+++.++|.++..+..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 53999999999998599999999999999868998999999999999837758899999851002222222222222222
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHH
Q ss_conf 103656899999999531389877699-99756299999773101-48068866599999999999800855--099997
Q 001618 559 LKNDDWVKAKETFRAASDATDGKDSYA-TLSLGNWNYFAALRNEK-RAPKLEATHLEKAKELYTRVIVQHTS--NLYAAN 634 (1043)
Q Consensus 559 ~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~~lg~~~y~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~ 634 (1043)
...|++.+|+..+.+++...|...... ....... ......... .......+.+.+|+..|.+++..+|. +..++.
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 22221121110002677736106788876640000-00010000147888876579999999999999713012221110
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 76999982299047999999999983489877861589769999997069889999999999885289999999999999
Q 001618 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 714 (1043)
Q Consensus 635 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~ 714 (1043)
.+|.++...|++++|+..|++++...| +++.+|+++|.+|..+|++++|+..|+++++. .|.++.+++.+|.+
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHH
T ss_conf 368888888877550021112222222-----22111013330122111101378887789988--43249999999999
Q ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9862019999999999998399982034589999
Q 001618 715 HYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 715 ~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~la~~ 748 (1043)
|...|++++|+..|++++.+.|++...++..+.+
T Consensus 250 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9987899999999999997097570011245999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.5e-21 Score=159.70 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999986129999225999999999839-998999999999983999988999989999980993999999999998
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 145 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 145 (1043)
+|+..+++++.++|.+..+|..+|.++...| ++++|+..+++++..+|++..+|..+|.++...|++.+|+..+.+++.
T Consensus 61 ~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~ 140 (315)
T d2h6fa1 61 RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN 140 (315)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999998798876999999999998376799999999999988774226898875888850537889988755543
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 49999057887599999980999899999999995298869999999999998100---774999999999999839884
Q 001618 146 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKMQRAFEIYPYC 222 (1043)
Q Consensus 146 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~---~~~~~~A~~~~~~al~~~p~~ 222 (1043)
.+|.+ ..+|..+|.++..+|++++|+..|.++++++|.+..+|..++.++...+. .+.+.+|+..+.+++..+|.+
T Consensus 141 ~dp~n-~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~ 219 (315)
T d2h6fa1 141 QDAKN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 219 (315)
T ss_dssp HCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 21004-68899887788888866789999999998797449999889999987456310235477679999999849885
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 001618 223 AMALNYLAN 231 (1043)
Q Consensus 223 ~~~~~~la~ 231 (1043)
..++..++.
T Consensus 220 ~~~~~~l~~ 228 (315)
T d2h6fa1 220 ESAWNYLKG 228 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 699999877
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.6e-20 Score=152.66 Aligned_cols=221 Identities=9% Similarity=-0.019 Sum_probs=138.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 898406888769999995599278999999999868690999999999999839-9368999999999876999579999
Q 001618 475 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 553 (1043)
Q Consensus 475 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 553 (1043)
..|....++..++.++...+.+++|+..+.+++.++|.+..+|..+|.++...+ ++++|+.++++++..+|.+..+|..
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~ 117 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69779999999999999588669999999999987988769999999999983767999999999999887742268988
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 87786103656899999999531389877699997562999997731014806886659999999999980085509999
Q 001618 554 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 633 (1043)
Q Consensus 554 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 633 (1043)
+|.++..+|++.+|+..+.+++...|. +..++..+|.+ +... +++++|+..|.++++.+|.+..++
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~-~~~~------------~~~~~Al~~~~~al~~~p~n~~a~ 183 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNSVW 183 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 758888505378899887555432100-46889988778-8888------------866789999999998797449999
Q ss_pred HHHHHHHHHCCC------CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 776999982299------04799999999998348987786158976999999706988999999999988528999999
Q 001618 634 NGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQI 707 (1043)
Q Consensus 634 ~~la~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 707 (1043)
+.++.++...+. +.+|+..+.+++...| .+..+|++++.++... ...++...+..++...+...++.+
T Consensus 184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 257 (315)
T d2h6fa1 184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYL 257 (315)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 8899999874563102354776799999998498-----8569999987798862-718899999999972877578999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 001618 708 LLYLARTH 715 (1043)
Q Consensus 708 l~~la~~~ 715 (1043)
+..++.++
T Consensus 258 ~~~l~~~y 265 (315)
T d2h6fa1 258 IAFLVDIY 265 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=1.5e-22 Score=166.46 Aligned_cols=263 Identities=9% Similarity=-0.032 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--H
Q ss_conf 99999999986129999225999999999839----------99899999999998399998899998999998099--3
Q 001618 66 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 133 (1043)
Q Consensus 66 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g----------~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~--~ 133 (1043)
++|+.++++++..+|.+..+|..++.++...+ .+.+|+.+|+.++..+|.++.+|..+|.++...+. +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999988785899999999999976500347787789999999999998688867989886489988430428
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999849999057887599999980999899999999995298869999999999998100774999999999
Q 001618 134 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 213 (1043)
Q Consensus 134 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 213 (1043)
.+|+..+.+++..+|......+...|.++...+.+..|+..+++++..+|.+..+|..+|.++...++ +.+|+..+.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~---~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP---QPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC---CCCSSSCCS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC---HHHHHHHHH
T ss_conf 99999999998559212111105789998744552899999999887189879999999999998268---898999887
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99983988499999999999960998999999999985058998733899999999997299999999999999840899
Q 001618 214 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 293 (1043)
Q Consensus 214 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 293 (1043)
+++...|... .....+...+...++...+..++. ..
T Consensus 203 ~~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~a~~~~~~~l~---~~ 238 (334)
T d1dcea1 203 LPENVLLKEL-----------------------------------------ELVQNAFFTDPNDQSAWFYHRWLL---GR 238 (334)
T ss_dssp SCHHHHHHHH-----------------------------------------HHHHHHHHHCSSCSHHHHHHHHHH---SC
T ss_pred HHHHHHHHHH-----------------------------------------HHHHHHHHHCCHHHHHHHHHHHHH---HC
T ss_conf 7677689999-----------------------------------------999999882441488999998877---18
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 98745589899999982997999999999998799969999999999997299899999999999729999999999999
Q 001618 294 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 373 (1043)
Q Consensus 294 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 373 (1043)
|.....+..++.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|.....|..++.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 66056788799999998669999999998876291379999999999987899999999999999879663999999999
Q ss_pred HH
Q ss_conf 99
Q 001618 374 LL 375 (1043)
Q Consensus 374 ~~ 375 (1043)
.+
T Consensus 319 ~~ 320 (334)
T d1dcea1 319 KF 320 (334)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.4e-17 Score=132.40 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=4.3
Q ss_pred HHHCCCHHHHHHHH
Q ss_conf 99829989999999
Q 001618 413 HFEKGEFESAHQSF 426 (1043)
Q Consensus 413 ~~~~g~~~~A~~~~ 426 (1043)
+...|++..+...+
T Consensus 101 ~~~~~~~~~a~~~~ 114 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQ 114 (366)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 78888899999889
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=3.3e-21 Score=157.28 Aligned_cols=97 Identities=8% Similarity=-0.160 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHH
Q ss_conf 90479999999999834898778615897699999970698899999999998852899999999999999862019999
Q 001618 645 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 724 (1043)
Q Consensus 645 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A 724 (1043)
..+++...+.+++...| .....+..+|.++...|++.+|+..+.+++.. ++.+..++..+|.++...|++++|
T Consensus 223 ~~~~a~~~~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA 295 (334)
T d1dcea1 223 PNDQSAWFYHRWLLGRA-----EPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKET 295 (334)
T ss_dssp SSCSHHHHHHHHHHSCC-----CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHH
T ss_pred CHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 41488999998877186-----60567887999999986699999999988762--913799999999999878999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999998399982034589999
Q 001618 725 KKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 725 ~~~~~~a~~~~P~~~~~~~~la~~ 748 (1043)
+.+|+++++++|.+...+.+++..
T Consensus 296 ~~~~~~ai~ldP~~~~y~~~L~~~ 319 (334)
T d1dcea1 296 LQYFSTLKAVDPMRAAYLDDLRSK 319 (334)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999998796639999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.1e-18 Score=135.34 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 999999999982998999999999970
Q 001618 405 VLNNIGVIHFEKGEFESAHQSFKDALG 431 (1043)
Q Consensus 405 ~~~~la~~~~~~g~~~~A~~~~~~al~ 431 (1043)
++..+|.++...|++++|...+++++.
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999987899999999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=3.5e-18 Score=136.48 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999999861299----99225999999999839998999999999983999988999989999980993999999
Q 001618 64 HFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 139 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 139 (1043)
+++.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++..+|+++.++..+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99999999999987633699999999999999999879999999999985434999889996004278887778875234
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999849999057887599999980999899999999995298869999999999998100
Q 001618 140 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 201 (1043)
Q Consensus 140 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 201 (1043)
|++++..+|+. ..+++.+|.++..+|++..|+..|+++++.+|.+......++......+.
T Consensus 94 ~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 154 (259)
T d1xnfa_ 94 FDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154 (259)
T ss_dssp HHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 46899987611-11588899999987667999999999986530007888999999988535
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=8.7e-19 Score=140.66 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 88769999995599278999999999868690999999999999839936899999999987699957999987786103
Q 001618 482 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 482 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (1043)
+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|++++.++|.++.++..+|.++...
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998799999999999854349998899960042788877788752344689998761111588899999987
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 6568999999995313
Q 001618 562 DDWVKAKETFRAASDA 577 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~ 577 (1043)
|++..|+..|+++++.
T Consensus 119 g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQD 134 (259)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 6679999999999865
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=4.3e-14 Score=108.38 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Q ss_conf 999999999998612999922599999999983--------------9998999999999983-9999889999899999
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK--------------GEVEQASSAFKIVLEA-DRDNVPALLGQACVEF 128 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--------------g~~~~A~~~~~~~l~~-~p~~~~a~~~la~~~~ 128 (1043)
.+..+..+|++|+...|.++..|+..+..+... +.+++|..+|++++.. .|.+...|...+.+..
T Consensus 31 ~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 69999999999998777999999999999987073688777876310245999999999998749987999999999998
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 8099399999999999849999057887599999980999899999999995298869999999999998-100774999
Q 001618 129 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRK 207 (1043)
Q Consensus 129 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~~~ 207 (1043)
..|+++.|..+|++++...|.....+|...+.+....|+++.|+..|.+++...|.+...+...+.+... .++ .+.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~---~~~ 187 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHH
T ss_pred HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHH
T ss_conf 61338999999999998715786999999999999827868899999999980888679999999999876557---789
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999998398849999999999996099899999999998505899873-389999999999729999999999999
Q 001618 208 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK-SHSYYNLARSYHSKGDYEKAGLYYMAS 286 (1043)
Q Consensus 208 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 286 (1043)
|...|++++..+|.++..+...+.++...|+++.|..+|++++...+.+|.. ...|..........|+.+.+..+++++
T Consensus 188 a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999986100388999999999986986899999999998278986899999999999999849999999999999
Q ss_pred HHH
Q ss_conf 984
Q 001618 287 VKE 289 (1043)
Q Consensus 287 ~~~ 289 (1043)
...
T Consensus 268 ~~~ 270 (308)
T d2onda1 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 987
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=2.4e-14 Score=110.12 Aligned_cols=227 Identities=9% Similarity=0.018 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHC
Q ss_conf 7899999999986869099999999999983--------------9936899999999987-699957999987786103
Q 001618 497 VAASVLYRLILFKYQDYVDAYLRLAAIAKAR--------------NNLQLSIELVNEALKV-NGKYPNALSMLGDLELKN 561 (1043)
Q Consensus 497 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~ 561 (1043)
..+..+|++++...|.++..|+..+..+... +..+++..++++++.. .|.+..+|..++.++...
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999999877799999999999998707368877787631024599999999999874998799999999999861
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 65689999999953138987769999756299999773101480688665999999999998008550999977699998
Q 001618 562 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 562 g~~~~A~~~~~~~l~~~~~~~~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 641 (1043)
|+++.|...|++++...|......+..++.. .... +.++.|..+|.+++...|.+...+...+....
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~-~~~~------------~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~ 179 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 3389999999999987157869999999999-9982------------78688999999999808886799999999998
Q ss_pred -HCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHH
Q ss_conf -229904799999999998348987786158976999999706988999999999988528999--99999999999862
Q 001618 642 -EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEA 718 (1043)
Q Consensus 642 -~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~ 718 (1043)
..|+.+.|..+|++++...| +++.+|...+..+...|+++.|...|++++...+.++. ..+|......-...
T Consensus 180 ~~~~~~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~ 254 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 765577899999999998610-----038899999999998698689999999999827898689999999999999984
Q ss_pred HCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 01999999999999839998203
Q 001618 719 EQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 719 g~~~~A~~~~~~a~~~~P~~~~~ 741 (1043)
|+...+..+++++.+..|.....
T Consensus 255 G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 255 GDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999877110220
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.7e-17 Score=129.42 Aligned_cols=227 Identities=9% Similarity=0.055 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999861299992259999999998399989999999999839999889999899999809939999999999984
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 146 (1043)
+|+++|++++...|+.+.+++.+|.++..+|++++| |++++..+|....+......+ ....|..++..++.....
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~L--w~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL--WNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHH--HHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
T ss_conf 999999999871999799995199999997629999---999987493019998579999--999999999999985616
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99990578875999999809998999999999952988699999999999981007749999999999998398849999
Q 001618 147 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 226 (1043)
Q Consensus 147 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 226 (1043)
.... .. .......++.+....+. +..++..+.+++.++|.+.
T Consensus 79 ~~~~-~~-------------------------------~~~~~~~~~~l~~a~~~---Y~~ai~~l~~~~~l~~~~~--- 120 (497)
T d1ya0a1 79 RANP-NR-------------------------------SEVQANLSLFLEAASGF---YTQLLQELCTVFNVDLPCR--- 120 (497)
T ss_dssp SSCT-TT-------------------------------THHHHHHHHHHHHHHHH---HHHHHHHHTC------------
T ss_pred CCCC-CH-------------------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCHHHH---
T ss_conf 4584-37-------------------------------99999999999999999---9999999999878991139---
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999609989999999999850589987338999999999972999999999999998408999874558989999
Q 001618 227 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 306 (1043)
Q Consensus 227 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~la~~ 306 (1043)
..+..+|..+...|++..|+..+..++.. ....++..+|.+
T Consensus 121 ----------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~LG~l 161 (497)
T d1ya0a1 121 ----------------------------------VKSSQLGIISNKQTHTSAIVKPQSSSCSY-----ICQHCLVHLGDI 161 (497)
T ss_dssp --------------------------------------------------------CCHHHHH-----HHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHH
T ss_conf ----------------------------------99998579987589999999999988278-----899999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 998299799999999999879996999999999999729989999999999972999999999999999
Q 001618 307 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 375 (1043)
Q Consensus 307 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 375 (1043)
+...+++++|+.+|.+++.+.|++...++.+|.++...|+..+|+.+|.+++...|..+.++.+|+.++
T Consensus 162 ~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998024789999999999878996599999999999869999999999999817999789999999999
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-16 Score=126.32 Aligned_cols=226 Identities=14% Similarity=0.032 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998499990578875999999809998999999999952988699999999999981007749999999999
Q 001618 135 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 214 (1043)
Q Consensus 135 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 214 (1043)
+|+++|++++.+.|+. ...++++|.++...+++.+| |++++..+|....+......+.... +..++..++.
T Consensus 4 eA~q~~~qA~~l~p~~-a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~-----y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADM-TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHA-----FKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGGG-TCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHH-----THHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_conf 9999999998719997-99995199999997629999---9999874930199985799999999-----9999999998
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99839884999999999999609989999999999850589987338999999999972999999999999998408999
Q 001618 215 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 294 (1043)
Q Consensus 215 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 294 (1043)
..+... ...........++.+....+.|..++..+..... ..+
T Consensus 75 ~~k~~~----------------------------------~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~---l~~ 117 (497)
T d1ya0a1 75 QAKNRA----------------------------------NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN---VDL 117 (497)
T ss_dssp HHSCSS----------------------------------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HCCCCC----------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCH
T ss_conf 561645----------------------------------8437999999999999999999999999999878---991
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 87455898999999829979999999999987999699999999999972998999999999997299999999999999
Q 001618 295 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 374 (1043)
Q Consensus 295 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 374 (1043)
.....+..+|..+...+++..|+..+.+++...+ ..++..+|.++...+++++|+.+|.+++.+.|++..++..+|.+
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp -------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 1399999857998758999999999998827889--99999999999980247899999999998789965999999999
Q ss_pred H-HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9-02998899999999999888619998699999999999
Q 001618 375 L-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 413 (1043)
Q Consensus 375 ~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 413 (1043)
+ ..|++.+|+.+|.+++...+. .+.++.+++.++
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~-----~~~a~~nL~~~~ 230 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFP-----FPAASTNLQKAL 230 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBC-----CHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHH
T ss_conf 99869999999999999817999-----789999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=2.5e-13 Score=103.10 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC
Q ss_conf 976999999706988999999999988528999-----99999999999862019999999999998399
Q 001618 672 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 736 (1043)
Q Consensus 672 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P 736 (1043)
+.++|.+|..+|+|.+|+..|++++...+..+. ...+..++.+++..|++..|...+++++.++|
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 8999999998173999999999999868133245556999999999999984659999999999997597
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.4e-12 Score=96.36 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999861299992259999999998399989999999999839999889999899999809939999999999984
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 146 (1043)
.|+..|.++ .|.++.+|+.+|.+++..|++++|+..|+++++.+|+++.++..+|.+++.+|+|++|+..|++++..
T Consensus 23 ~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 23 GALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999864---89889999999999998589146787899999985523466788999998542499999999999986
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.4e-12 Score=95.34 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 59999999998399989999999999839999889999899999809939999999999984999905788759999998
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 164 (1043)
.+...|..++..|+|++|+..|.+++..+|.++.+|..+|.+++..|++.+|+..|.++++.+|.+ ..+++.+|.++..
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHH
T ss_conf 999999999995899999998660211000113332456788874054212888899999875446-6877999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 099989999999999529886999999999999
Q 001618 165 LGQLGKARQAFQRALQLDPENVEALVALAVMDL 197 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 197 (1043)
+|++++|+..|++++.++|++..++..++.+..
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 499999999899998729997999999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=5.8e-12 Score=93.75 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=32.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 99999983999899999999998399998899998999998099399999999999849999057887599999980999
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 168 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 168 (1043)
.|..++..|+|+.|+..|.++ .|.++.+++.+|.+++.+|++++|+..|+++++++|+. +.+++.+|.++..+|++
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCH
T ss_conf 999999877999999999864---89889999999999998589146787899999985523-46678899999854249
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999995
Q 001618 169 GKARQAFQRALQ 180 (1043)
Q Consensus 169 ~~A~~~~~~al~ 180 (1043)
++|+..|++++.
T Consensus 87 ~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 87 DLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.50 E-value=2.9e-10 Score=82.06 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=7.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999999839998999999999
Q 001618 86 WVGKGQLLLAKGEVEQASSAFKIV 109 (1043)
Q Consensus 86 ~~~~a~~~~~~g~~~~A~~~~~~~ 109 (1043)
++.+|..++..+++.+|+.+|+++
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kA 28 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKA 28 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999877999999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.49 E-value=1.4e-09 Score=77.24 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=7.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999829989999999999
Q 001618 407 NNIGVIHFEKGEFESAHQSFKDA 429 (1043)
Q Consensus 407 ~~la~~~~~~g~~~~A~~~~~~a 429 (1043)
+++|..++..+++.+|+.+|+++
T Consensus 6 ~~lG~~~~~~~d~~~A~~~~~kA 28 (265)
T d1ouva_ 6 VGLGAKSYKEKDFTQAKKYFEKA 28 (265)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999877999999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.9e-12 Score=95.76 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 59999999998399989999999999839999889999899999809939999999999984999905788759999998
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 164 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 164 (1043)
-+...|..++..|+|++|+..|.+++..+|.++.++..+|.++...|++.+|+..|.+++..+|.+ +.+++.+|.++..
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_conf 999999999996999999999999886199601343000110110000112100134677740220-2677889999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 09998999999999952988699999999999
Q 001618 165 LGQLGKARQAFQRALQLDPENVEALVALAVMD 196 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 196 (1043)
+|++++|+..|+++++++|++..++..++.+.
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 12799999999999984989899999999783
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=5.4e-13 Score=100.82 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 22599999999983999899999999998399998899998999998099399999999999849999057887599999
Q 001618 83 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 162 (1043)
Q Consensus 83 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 162 (1043)
+..+...|..++..|+|++|+..|.+++..+|.++.+|..+|.+|...|+|++|+..|.+++.++|++ ..+++.+|.++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~~ 82 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
T ss_conf 99999999999986999999999999998599989999817898741000001247888888718873-89999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9809998999999999952988
Q 001618 163 YKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 163 ~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
..+|++++|+..|++++.++|.
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9879999999999999874955
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.3e-11 Score=91.41 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999861299992259999999998399989999999999839999889999899999809939999999999984
Q 001618 67 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 146 (1043)
Q Consensus 67 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 146 (1043)
+|+..|++++..+|.++..|+.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++.+|+..|++++..
T Consensus 28 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 28 NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99998660211000113332456788874054212888899999875446687799999999949999999989999872
Q ss_pred CCCC
Q ss_conf 9999
Q 001618 147 HPSC 150 (1043)
Q Consensus 147 ~p~~ 150 (1043)
.|++
T Consensus 108 ~p~~ 111 (159)
T d1a17a_ 108 KPHD 111 (159)
T ss_dssp STTC
T ss_pred CCCC
T ss_conf 9997
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=1.9e-12 Score=96.99 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 65999999999998008550999977699998229904799999999998348987786158976999999706988999
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 689 (1043)
Q Consensus 610 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 689 (1043)
|++++|+..|.+++..+|.++.++.++|.+|...|++++|+..|+++++..| +++.+|+++|.+|..+|++++|+
T Consensus 18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-----~~~~a~~~lg~~~~~l~~~~~A~ 92 (201)
T d2c2la1 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-----QSVKAHFFLGQCQLEMESYDEAI 92 (201)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999999999985999899998178987410000012478888887188-----73899999999999879999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999988
Q 001618 690 KMYQNCLRK 698 (1043)
Q Consensus 690 ~~~~~al~~ 698 (1043)
..|++++..
T Consensus 93 ~~~~~al~l 101 (201)
T d2c2la1 93 ANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.4e-11 Score=89.50 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999980993999999999998499990578875999999809998999999999952988699999999999981007
Q 001618 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 202 (1043)
Q Consensus 123 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 202 (1043)
.|..++..|+|++|+.+|.+++..+|.+ +.++..+|.++..+|++.+|+..|.+++.++|+++.++..+|.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~- 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR- 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-
T ss_conf 9999999699999999999988619960-13430001101100001121001346777402202677889999998127-
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 749999999999998398849999
Q 001618 203 AGIRKGMEKMQRAFEIYPYCAMAL 226 (1043)
Q Consensus 203 ~~~~~A~~~~~~al~~~p~~~~~~ 226 (1043)
+++|+..|++++..+|.++.++
T Consensus 87 --~~~A~~~~~~a~~~~p~~~~~~ 108 (117)
T d1elwa_ 87 --FEEAKRTYEEGLKHEANNPQLK 108 (117)
T ss_dssp --HHHHHHHHHHHHTTCTTCHHHH
T ss_pred --HHHHHHHHHHHHHHCCCCHHHH
T ss_conf --9999999999998498989999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=9.2e-11 Score=85.47 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=25.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8999998099399999999999849999057887599999980999899999999995298869999999999
Q 001618 123 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 195 (1043)
Q Consensus 123 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 195 (1043)
+|.+++..|+|.+|+..+.+++..+|++ ..+++.+|.|+..+|++++|+..|+++++++|++..+...++.+
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999886421101100000001002231-03467779999872229999999999997298989999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.3e-10 Score=84.45 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7699999970698899999999998852899999999999999862019999999999998399982034589999
Q 001618 673 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 673 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~la~~ 748 (1043)
.++|.||..+|++.+|+..+++++.. +|.++.+++.+|.+++..|++++|+..|++++.++|+++.+...++.+
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999988642110110000000100--223103467779999872229999999999997298989999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.29 E-value=5.3e-10 Score=80.25 Aligned_cols=75 Identities=15% Similarity=-0.001 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 876999999559927899999999986869099999999999983993689999999998769995799998778
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 557 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (1043)
+.++|.+|..+|++.+|+..++.++.++|.++.+++.+|.++..+|++++|+..|.+++.++|+++.+...++.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 984999987762201100022322201310488999889999882789999999999998598989999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.28 E-value=3.2e-10 Score=81.73 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 69999997069889999999999885289999999999999986201999999999999839998203
Q 001618 674 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 674 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~ 741 (1043)
|+|.+|+.+|++.+|+..+++++.. +|.++.+++.+|.++...|++++|+..|+++++++|++..+
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 137 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 1999999846530111010001000--00001246776899999689999999999999829898999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.25 E-value=1.3e-10 Score=84.47 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 989999980993999999999998499990578875999999809998999999999952988699999999999
Q 001618 122 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 196 (1043)
Q Consensus 122 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 196 (1043)
.+|.|++.+|+|.+|+..+.+++.++|.+ ..+++.+|.++..+|++++|+..|.+++.++|++..+...++.+.
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 49999877622011000223222013104-889998899998827899999999999985989899999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.25 E-value=5.1e-10 Score=80.34 Aligned_cols=67 Identities=19% Similarity=0.055 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 6999999559927899999999986869099999999999983993689999999998769995799
Q 001618 485 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 551 (1043)
Q Consensus 485 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (1043)
++|.+|..+|++.+|+..+.+++..+|.++.+|+.+|.++..+|++++|+..|++++.++|++..+.
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 1999999846530111010001000000012467768999996899999999999998298989999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.22 E-value=3.5e-10 Score=81.46 Aligned_cols=140 Identities=14% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 99999999999982998999999999970202232113455203534456677765666654210378877789840688
Q 001618 403 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 482 (1043)
Q Consensus 403 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1043)
...+...|..++..|++.+|+..|.+++...+............. ..|....+
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 79 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK---------------------------LQPVALSC 79 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGG---------------------------GHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HCHHHHHH
T ss_conf 999999999999908899999999999874111166665577877---------------------------19023999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 87699999955992789999999998686909999999999998399368999999999876999579999877861036
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 562 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (1043)
+.++|.++..+|++.+|+..+.+++..+|+++.+|+.+|.++..+|++++|+..|++++.++|++..+...+..+.....
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99899999864021013666554431000223677769999998047999999999999859899999999999999999
Q ss_pred CHHHHHH
Q ss_conf 5689999
Q 001618 563 DWVKAKE 569 (1043)
Q Consensus 563 ~~~~A~~ 569 (1043)
...++.+
T Consensus 160 ~~~~~~k 166 (169)
T d1ihga1 160 AQKDKEK 166 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 8999998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.19 E-value=2.3e-10 Score=82.72 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 25999999999839998999999999983999988999989999980993999999999998499990578875999999
Q 001618 84 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 163 (1043)
Q Consensus 84 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 163 (1043)
..++..|..++..|++.+|+..|++++..+|.++.++..+|.++...|++.+|+..|++++..+|++ ..+++.+|.++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~ 95 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 95 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHH
T ss_conf 9999999999987605899998861011211110012335456410125877410000011111100-000378999999
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 8099989999999999
Q 001618 164 KLGQLGKARQAFQRAL 179 (1043)
Q Consensus 164 ~~g~~~~A~~~~~~al 179 (1043)
..|++++|+..|++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
T ss_conf 9789999999999981
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.3e-10 Score=82.79 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=53.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHH
Q ss_conf 999999839998999999999983999988999989999980---993999999999998499990-5788759999998
Q 001618 89 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCP-GAIRLGIGLCRYK 164 (1043)
Q Consensus 89 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~-~~~~~~la~~~~~ 164 (1043)
++..++..+++++|...|++++..+|.++.+++.+|.+++.. +++.+|+..|++++..+|... ..+++.+|.+|..
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98873699999999999999883299989999999999998512678999999999998606993199999999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 09998999999999952988699999999999
Q 001618 165 LGQLGKARQAFQRALQLDPENVEALVALAVMD 196 (1043)
Q Consensus 165 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 196 (1043)
+|++++|+.+|+++++++|++..+...+..+.
T Consensus 85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 73169999999999976909899999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.14 E-value=3.8e-10 Score=81.24 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6799999999999998612999922599999999983999----------89999999999839999889999899999
Q 001618 60 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 128 (1043)
Q Consensus 60 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 128 (1043)
.|.+.|++|+..|++++..+|+++.+++.+|.++...+++ ++|+..|++++..+|+++.+++.+|.++.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9873699999999999861883108999999999876213333677887888999999988730120587766899998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.5e-09 Score=75.58 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------HHHHHHH
Q ss_conf 5999999999839998999999999983999988999989999980993999999999998499990------5788759
Q 001618 85 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRLGI 158 (1043)
Q Consensus 85 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~~l 158 (1043)
.+-.+|..++..|+|++|+.+|.+++..+|.++.++..+|.+++.+|+|.+|+..+.+++.++|... ..++..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999998599999999999998849645899986889998818607789999999986801278898899999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999809998999999999952988
Q 001618 159 GLCRYKLGQLGKARQAFQRALQLDPE 184 (1043)
Q Consensus 159 a~~~~~~g~~~~A~~~~~~al~~~p~ 184 (1043)
|.++..++++++|+.+|.+++..++.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 99999938899999999999845999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.1e-10 Score=83.05 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=46.6
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99998229904799999999998348987786158976999999706---988999999999988528999999999999
Q 001618 637 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLAR 713 (1043)
Q Consensus 637 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~l~~la~ 713 (1043)
+..+...+++.+|...|++++...| +++.+++++|+++...+ ++.+|+..|++++...+.+..+.+++.||.
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p-----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8873699999999999999883299-----98999999999999851267899999999999860699319999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99862019999999999998399982034589999
Q 001618 714 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 748 (1043)
Q Consensus 714 ~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~la~~ 748 (1043)
+|+..|++++|+.+|++++.++|++..++...+.|
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99997316999999999997690989999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.12 E-value=1.7e-09 Score=76.82 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 87699999955992789999999998686909999999999998399368999999999876999579999877861036
Q 001618 483 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 562 (1043)
Q Consensus 483 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (1043)
.+.+|..+...|++.+|+..|++++..+|+++.+|..+|.++...+++.+|+.++++++.++|.++.++..+|.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999999987605899998861011211110012335456410125877410000011111100000378999999978
Q ss_pred CHHHHHHHHHHH
Q ss_conf 568999999995
Q 001618 563 DWVKAKETFRAA 574 (1043)
Q Consensus 563 ~~~~A~~~~~~~ 574 (1043)
++.+|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.10 E-value=7.9e-10 Score=79.05 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 65999999999998008550999977699998
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLA 641 (1043)
Q Consensus 610 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 641 (1043)
+.+++|+..|+++++.+|+++.++.++|.++.
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 36999999999998618831089999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=5.7e-09 Score=73.17 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 659999999999980085509999776999982299047999999999983
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 660 (1043)
Q Consensus 610 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 660 (1043)
+++++|+.+|++++..+|.++.++.++|.++..+|++.+|+..++++++..
T Consensus 18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~ 68 (128)
T d1elra_ 18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (128)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999999999999988496458999868899988186077899999999868
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.87 E-value=3.6e-08 Score=67.62 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=67.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----
Q ss_conf 76999982299047999999999983489877-------8615897699999970698899999999998852899----
Q 001618 635 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 703 (1043)
Q Consensus 635 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---- 703 (1043)
+.|..+...|++++|+..|+++++..|..+.. ....+|.++|.+|..+|++.+|+..++.++..++...
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999998599999999999999868442010200121027999999999999828630015766435530431002455
Q ss_pred C-----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 9-----99999999999862019999999999998399982034
Q 001618 704 D-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 742 (1043)
Q Consensus 704 ~-----~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~ 742 (1043)
. ..+++.+|.+|...|++++|+..|++++++.|......
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 44311278775269999988888888999999998668742307
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=3.2e-08 Score=67.95 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 6158976999999706988999999999988528999-----99999999999862019999999999998399982034
Q 001618 668 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 742 (1043)
Q Consensus 668 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~ 742 (1043)
+++-++.+|.+++.+|+|..|+.+|+++++..+..+. ..++.+||.+++..|++++|+.+++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 69999999999999779999999999999988653014764789999872688865773988878877988692979999
Q ss_pred HHHHHHH
Q ss_conf 5899998
Q 001618 743 FDAGVAM 749 (1043)
Q Consensus 743 ~~la~~~ 749 (1043)
+|++.+.
T Consensus 84 ~Nl~~~~ 90 (95)
T d1tjca_ 84 GNLKYFE 90 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.77 E-value=6.7e-09 Score=72.68 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 65999999999998008550999977699998229904799999999998348987786158976999999706988999
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 689 (1043)
Q Consensus 610 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 689 (1043)
|++++|+..|+++++.+|.+..++..++.+++..|++++|+..|+++++..| +...++..++.++...+...++.
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-----~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-----EYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 8999999999999997899999999999999987999999999999998699-----73899999999998346637899
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 9999999885289999999999999986201999999999999839998203
Q 001618 690 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 741 (1043)
Q Consensus 690 ~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~ 741 (1043)
..+...... ..++....+...+..+...|+.++|...+.++....|..+..
T Consensus 85 ~~~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 85 QGAATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp TSCCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 875444203-586479999999999996799899999999998339999810
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.73 E-value=3.4e-08 Score=67.78 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 299799999999999879996999999999999729989999999999972999999999999
Q 001618 310 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 372 (1043)
Q Consensus 310 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 372 (1043)
.|++++|+..++++++.+|.+..++..++.++...|++++|+..|+.+++++|.....+..++
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~ 71 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 889999999999999978999999999999999879999999999999986997389999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.59 E-value=2.9e-06 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=7.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999998299899999999997
Q 001618 409 IGVIHFEKGEFESAHQSFKDAL 430 (1043)
Q Consensus 409 la~~~~~~g~~~~A~~~~~~al 430 (1043)
.|......|++++|...|.+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL 38 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAAL 38 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998879999999999998
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=6.3e-07 Score=59.10 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=4.2
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 09998999999999
Q 001618 165 LGQLGKARQAFQRA 178 (1043)
Q Consensus 165 ~g~~~~A~~~~~~a 178 (1043)
+|++++|+..|+++
T Consensus 59 ~g~~~~A~~~y~~a 72 (95)
T d1tjca_ 59 QGDLDKALLLTKKL 72 (95)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
T ss_conf 57739888788779
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=2.6e-05 Score=48.01 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHH
Q ss_conf 9999999999729989999999999972999999999999999-029988999999999
Q 001618 333 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 390 (1043)
Q Consensus 333 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 390 (1043)
++..++.++...|++++|+..+++++..+|.+..+|..++.++ ..|++.+|+..|.++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999988799057899999999849851999999999999855799999999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.87 E-value=0.00029 Score=40.78 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHH
Q ss_conf 999999999998612999922599999999983999899999999998399998899998999998----0993999999
Q 001618 64 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 139 (1043)
Q Consensus 64 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~----~g~~~~Al~~ 139 (1043)
++.+|+.+|.++.... ++.+++.++. ....++++|+..|+++.... ++.+.+.+|.++.. ..++.+|+.+
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHCC--CCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999999999879--9154565410--11238999999876541133--1255556787533013531035788888
Q ss_pred HHHHHH
Q ss_conf 999998
Q 001618 140 YKRALQ 145 (1043)
Q Consensus 140 ~~~al~ 145 (1043)
|+++..
T Consensus 82 ~~~aa~ 87 (133)
T d1klxa_ 82 YSKACG 87 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 750002
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.87 E-value=0.00035 Score=40.24 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH----CCCH
Q ss_conf 659999999999980085509999776999982299047999999999983489877861589769999997----0698
Q 001618 610 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 685 (1043)
Q Consensus 610 ~~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~ 685 (1043)
.++++|+.+|.++.+.. ++.+...++. ....+..+|+.+|+++.+.. ++.+.+++|.+|.. ..++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-------~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHCC--CCCCCHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHCCCCCHHH
T ss_conf 69999999999999879--9154565410--11238999999876541133-------1255556787533013531035
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHH
Q ss_conf 89999999999885289999999999999986----20199999999999983
Q 001618 686 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHL 734 (1043)
Q Consensus 686 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~~a~~~ 734 (1043)
.+|+.+|+++... .++...+.||.+|+. ..+...|..+|+++.+.
T Consensus 76 ~~A~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 76 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCC----CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 7888887500025----740677899999982984677899999999999987
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.84 E-value=0.00032 Score=40.51 Aligned_cols=78 Identities=13% Similarity=0.142 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 158976999999706---988999999999988528999-9999999999986201999999999999839998203458
Q 001618 669 PDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 744 (1043)
Q Consensus 669 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~~a~~~~P~~~~~~~~ 744 (1043)
....|+.||++.... +..+++.+++.+++. .+.+ ...+++||.+|++.|++..|..++++++++.|++..+...
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 101999999998279688999999999999854--950599999999999998732999999999998239984999999
Q ss_pred HHHH
Q ss_conf 9999
Q 001618 745 AGVA 748 (1043)
Q Consensus 745 la~~ 748 (1043)
...|
T Consensus 113 ~~~I 116 (124)
T d2pqrb1 113 KSMV 116 (124)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.82 E-value=0.00017 Score=42.30 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999999984999905788759999998099989999999999529886999
Q 001618 135 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 188 (1043)
Q Consensus 135 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 188 (1043)
.|+.+++.++..+|.....+++.+|.+|+++|+++.|+.+++++++++|++..+
T Consensus 56 ~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 56 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 999999999854950599999999999998732999999999998239984999
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.0034 Score=33.45 Aligned_cols=83 Identities=12% Similarity=-0.065 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 59927899999999986869099999999999983993689999999998769995799998778610365689999999
Q 001618 493 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 572 (1043)
Q Consensus 493 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 572 (1043)
.+....+..++........+.......++ .....+++..+...+..+.......+...+.+|..+...|+...|...|.
T Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 68639999999860123466699999999-99882986999999986584624289999999999998398156899999
Q ss_pred HHHH
Q ss_conf 9531
Q 001618 573 AASD 576 (1043)
Q Consensus 573 ~~l~ 576 (1043)
.+..
T Consensus 344 ~~a~ 347 (450)
T d1qsaa1 344 QLMQ 347 (450)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9845
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.02 Score=28.07 Aligned_cols=18 Identities=22% Similarity=0.060 Sum_probs=5.6
Q ss_pred HHHHHHHHCCCHHHHHHH
Q ss_conf 699999955992789999
Q 001618 485 NLARLLEQIHDTVAASVL 502 (1043)
Q Consensus 485 ~la~~~~~~g~~~~A~~~ 502 (1043)
.+|+.+...|+...|..+
T Consensus 324 W~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 324 WQADLLLERGREAEAKEI 341 (450)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
T ss_conf 999999983981568999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.91 E-value=0.14 Score=22.33 Aligned_cols=276 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 70122323556799999999999998612999922599999999983999899999999998399998899998999998
Q 001618 50 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 129 (1043)
Q Consensus 50 ~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 129 (1043)
..|... .+.+.|+.|..+|. ...-+-....++...++++.|...+.+. +++..|......+..
T Consensus 19 ~i~~~c----~~~~lye~A~~lY~--------~~~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 19 QVGDRC----YDEKMYDAAKLLYN--------NVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 81 (336)
T ss_dssp --------------CTTTHHHHHH--------HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHH----HHCCCHHHHHHHHH--------HCCCHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHH
T ss_conf 999999----87877999999998--------6789999999997031599999999880-----889999999999972
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09939999999999984999905788759999998099989999999999529886999999999999810077499999
Q 001618 130 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 209 (1043)
Q Consensus 130 ~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~ 209 (1043)
.....-+ .+........+.-...+...|...|.++..+.+++.++...+.+...+..++.++...
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~---------- 146 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF---------- 146 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT----------
T ss_pred CCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----------
T ss_conf 7287899-----9999875357887899999998769859999999999757744467999999999986----------
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999998398849999999999996099899999999998505899873389999999999729999999999999984
Q 001618 210 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 289 (1043)
Q Consensus 210 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 289 (1043)
++.-.......+...=+...+...+... ..|-.+...|...|+++.|+...-
T Consensus 147 ------------~~~kl~e~l~~~s~~y~~~k~~~~c~~~-----------~l~~elv~Ly~~~~~~~~A~~~~i----- 198 (336)
T d1b89a_ 147 ------------KPQKMREHLELFWSRVNIPKVLRAAEQA-----------HLWAELVFLYDKYEEYDNAIITMM----- 198 (336)
T ss_dssp ------------CHHHHHHHHHHHSTTSCHHHHHHHHHTT-----------TCHHHHHHHHHHTTCHHHHHHHHH-----
T ss_pred ------------CHHHHHHHHHHCCCCCCHHHHHHHHHHC-----------CCHHHHHHHHHHCCCHHHHHHHHH-----
T ss_conf ------------9499999998602359999999998874-----------874999999985587999999999-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH----------HHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 08999874558989999998299799999999999879996999999----------99999972998999999999997
Q 001618 290 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------LGHIYVQLGQIEKAQELLRKAAK 359 (1043)
Q Consensus 290 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~~l~ 359 (1043)
..+..+.-....-.++.+..+.+.....+.-.+...|....-+.. +.....+.++..-...+++.+..
T Consensus 199 --~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 199 --NHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp --HSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred --HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf --765445669999999972478699999999999759999999999856579989999999853880779999999998
Q ss_pred HCCCCHHHHHHHHHHH-HCCCHHHHHHHHHH
Q ss_conf 2999999999999999-02998899999999
Q 001618 360 IDPRDAQAFIDLGELL-ISSDTGAALDAFKT 389 (1043)
Q Consensus 360 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 389 (1043)
.+ +..+...+..+| ...+++.-......
T Consensus 277 ~n--~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 277 HN--NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp TC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 18--099999999998671246789999987
|