Citrus Sinensis ID: 001620

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040---
Protein Sequence
MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPAKVQFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVANDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQKLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFRTGVK
Secondary Structure (PSIPRED)
cHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEcccccHHHHHHHHHHHcccccccccccccHcHHHHHHHHHHHHHHHHEcccccccccccHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHccccccccHHHHcHccHHcccccccccccccHHHHHcccccccccccHcccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccccccHEHEccccHcccccccccccc
Coil and Loop (DISEMBL)
MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANttiarvcpeqvpfmddddedptprgpkkppvqtanipkvpnlpkkdlKGMITLAnkklrpsksskkASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDefgqgivieDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESlkhefignegskkiphvkddsvkaveesdrsdidvvrtaqdrEDLESLREKIKEQLefgssgsltVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEIssenvekypLRVELHKeiegedaaldpnddLKELQSAQLSEEIEVKILAEeenkspakvqfekgiegseGLANIasenlhaekpdeefkssdsiqneeesTVEIVSIEESKEQeeklnhgdvpkktrDVQTEIVNDTreqeltdtpgnqgevgqnqendepgkpvegsqKQLKEEMQTEVAndtkeyeltdtpgsrqevagryqandeprklaaeqeCEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKKKLdesgvktrdsnDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFgeynnldyqseatstrptdreVEVVVIhgeqpqptseteEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALksdgrplykhmGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKtsaedddfkfTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGekfglsdaksqklehsnsrssvplrsfifgvkqkkqrssfffsmhpaltrkyngfrtgvk
Flexible Loop (DISEMBL)
MLQRAasnayswwwaSHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYykkrpelisFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPrgpkkppvqtanipkvpnlpkkdlKGMITLankklrpsksskkasaAKLVKsglskaeglkEIDKLQKQILtlqtdkefVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEeeqeksaeeakIERKRIKDARDKFESLkhefignegskkiphvkddsvkaveesdrsdidvvrtaqdredlESLREKIkeqlefgssgsltvTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRtleddkaslindkkdlsSKLVEMEEKLLRlhdlnrsveDQNYSFQTHLTEARYNIDHLSHKLKIQktdeeleissenvekypLRVELHKEIegedaaldpnDDLKELQSAQLSEEIEVKIlaeeenkspakvQFEKGIEGSEGLANIASenlhaekpdeefkssdsiqneeeSTVEIVSieeskeqeeklnhgdvpkktrdvQTEIVNdtreqeltdtpgnqgevgqnqendepgkpVEGSQKQLKEEMQTevandtkeyeltdtpgsrqevAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAkkkldesgvktrdsndvaKMQLEELrsantekdeeIQSLRQKLSILQAAFGEYNNLdyqseatstrptdREVEVVVIhgeqpqptseteeKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSkleekqrkqegsstaryalksdgrplyKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSdaksqklehsnsrssvplrsFIFGVKQKKQRSsfffsmhpaltrkyngfrtgvk
Low Complexity Region (SEG)
MLQRaasnayswwwasHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVeeayrayralaeryDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNLPKKDLKGMITLANkklrpsksskkasaaklvksglskaEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMeeeqeksaeeakieRKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSeeievkilaeeeNKSPAKVQFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNeeestveivsieeskeqeekLNHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVANDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQKLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFRTGVK
Disordered region (IsUnstruct)
*******NAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCP*******************************************************************************KLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAAL*************************************************************************************************************IDEVVSKVVNLET***************************************************LRLHDLN**VEDQNYSFQTHLTEARYNIDHLSHKLK*****************************************************************************************************************************************************************************************************************************************EMFLKGMENREKTILAEYTTVLRNY**********************************************SILQAAFGEYNNL******************VV*****************MDIDELLEENLDFWLRFSASFHQIQKFDTEVKDL*********************************PLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSL*******************FKFTSYQAAKFQG*V****************GLDHVKNLQIEVEKTL*****************************SFIFGVK******SFFFSMHPALTRKY********
Disordered Region (DISOPRED)
*************W***I*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FIFGVKQKKQRSSFFFSMHPA*************
Disordered Region (DISEMBL)
*********YSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDD*************PVQTANIPKVPNLPKKDLKGMITLANKK****************KSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETL*****************RKRIKDARDKFESLKHEFIGNEGSKKIPHV**************DIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPAKVQFEKGIEGSEGLANIASENLHAE*********************IVSIE***********GDVPKKTRDVQTEIVNDTREQELTDTPGNQGE***************************EVANDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKK***********SNDVAKMQLEELRS**********SLRQKLSILQAAFGEYNNLDYQS********DREVEVVVIHGE**********KFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSK*************ARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLS**************SVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFRTGVK
Disordered Region (DISPRO)
*********YSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPF****************************************************************SKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN****KIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK*D**LEISS***************************DLKELQSAQLSEEIEVKILAE*****PAKVQ**K**EGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGDVPKKTRDVQTEIVNDT*********************************************************************************EPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSIL************************************QPTSETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEE***************KSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGL****************VPLRSFIFGVKQKKQRSSFFFSMHPA*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSxxxxxxxxxxxxxxxxxxxxxKEFVKSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxFGQGIVIEDEEARTLMAAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFIGNEGSKKIPHVKDDSVKAVEESDRSDIDxxxxxxxxxxxxxxxxxxxxxLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPAKVQFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVANDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTIxxxxxxxxxxxxxxxxxxxxxGVKTRDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDFWLRFSASFHQxxxxxxxxxxxxxxxxxxxxxxxxxxxxQEGSSTARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQxxxxxxxxxxxxxxxxxxxxxLQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQKLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFRTGVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1043
224097180	1003	predicted protein [Populus trichocarpa]	0.933	0.971	0.545	0.0
255586659	1089	Myosin-1, putative [Ricinus communis] gi	0.959	0.919	0.532	0.0
186502305	947	Kinase interacting (KIP1-like) family pr	0.891	0.982	0.495	0.0
356497694	997	PREDICTED: uncharacterized protein LOC10	0.935	0.978	0.490	0.0
356529685	993	PREDICTED: uncharacterized protein LOC10	0.933	0.980	0.485	0.0
359496916	968	PREDICTED: uncharacterized protein LOC10	0.888	0.957	0.472	0.0
4544438	891	hypothetical protein [Arabidopsis thalia	0.837	0.980	0.472	0.0
359497561	924	PREDICTED: uncharacterized protein LOC10	0.870	0.982	0.471	0.0
13936326	974	kinase interacting protein 1 [Petunia in	0.907	0.972	0.448	0.0
147772118	1093	hypothetical protein VITISV_010189 [Viti	0.845	0.806	0.425	0.0

>gi|224097180|ref|XP_002310866.1| predicted protein [Populus trichocarpa] gi|222853769|gb|EEE91316.1| predicted protein [Populus trichocarpa]

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/1067 (54%), Positives = 748/1067 (70%), Gaps = 93/1067 (8%)

Query: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
            MLQRAASNAYSWWWASHIRTKQSKWLEQNL D+E+KV   +KLIEEDGDSFAKRAEMYYK
Sbjct: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLHDMEDKVQSVIKLIEEDGDSFAKRAEMYYK 60

Query: 61   KRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGP 120
            KRPELI FVE++YRAYRALAERY+HISTELQNAN TIA V PE+V F  ++DED  P   
Sbjct: 61   KRPELIHFVEDSYRAYRALAERYNHISTELQNANNTIAYVFPEKVQFAMEEDEDEAPSSK 120

Query: 121  ---KKPPVQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGL 177
               K P V  ANIPKVP +PK D+KG+ T A+KKL+  KS K AS A + KSGLSK+EGL
Sbjct: 121  FENKLPEVSRANIPKVPKIPK-DVKGLFTSASKKLQSKKSMKGASNATVSKSGLSKSEGL 179

Query: 178  KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIED 237
             EIDK+Q+QIL LQT+KEF KSSYE  LAKYW+IE QIKE+Q++V +LQDEFG GIVIED
Sbjct: 180  LEIDKIQRQILALQTEKEFAKSSYEGGLAKYWEIELQIKEMQEKVCNLQDEFGAGIVIED 239

Query: 238  EEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGS 297
            EEARTLMA+AALKSC+ETL Q++E+QE+SAEEA  ERKRI +AR+K +SLK EF+  E +
Sbjct: 240  EEARTLMASAALKSCQETLAQLQEKQERSAEEAVEERKRITNAREKLKSLKDEFLHGEIN 299

Query: 298  KKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAE 357
             + P  KD+ +KAVE  +     V  T ++++D+E LREKIKE L+ GS+ S+T  E+ E
Sbjct: 300  PENPRAKDEPIKAVEGLESIHQQVSGTTEEKQDIELLREKIKENLDVGSNASVTAAELVE 359

Query: 358  KIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE 417
            KIDE+V+K++NLE S SSQTAL+QRLRTETDELQA+I+TLE+DKA+LIN K DL  +L E
Sbjct: 360  KIDELVNKIINLEASVSSQTALIQRLRTETDELQAEIQTLEEDKATLINGKNDLREQLRE 419

Query: 418  MEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYP 477
            MEEKL  + +LN+SVEDQN S   H TEA  +IDHLS KL   K+D+E ++  E V++  
Sbjct: 420  MEEKLHGIQNLNQSVEDQNNSLHAHFTEAHSSIDHLSAKLLCVKSDDEFDVKPETVDRSL 479

Query: 478  LRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPAKVQFEKGIEGSE 537
            +      E+E ++AAL+P+D +++ Q+ +  E ++V   + E+ K            GSE
Sbjct: 480  V------EVESQEAALNPDDSIEKPQNVKTKEHLKVSGQSHEDFK------------GSE 521

Query: 538  GLANIASENL---HAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGDVPKKT 594
            G  N   + L     +KP+ E K S S Q  +E+  E+  + + KEQEEK+N  D     
Sbjct: 522  GALN-PDDGLGEQQNQKPNHELKVSYSSQKGKETPAEVSWLADFKEQEEKMNDADGS--- 577

Query: 595  RDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVANDTKE 654
                   +N T          NQGE                     KEE++    N ++ 
Sbjct: 578  -------MNFTE---------NQGE---------------------KEEIKEHGQNSSQP 600

Query: 655  YELTDTPGSRQEVAG-----RYQANDEPRKL------AAEQEC----EPDWKEMFLKGME 699
             + TD   S +E+ G     +    D P  +        EQE     EPDWK++F+ GME
Sbjct: 601  QKTTDLNNSMEELPGLEIEEKVFKKDSPSLMDDLNVEIQEQETTLVDEPDWKQLFMNGME 660

Query: 700  NREKTILAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLR 759
            NRE+ +L EYT++LRN+KE KKKL E+  K  DS   A +Q+ EL+SAN +KDE+IQ LR
Sbjct: 661  NRERALLTEYTSILRNFKEVKKKLSEAEKKNGDSLFDATVQVRELKSANAKKDEQIQFLR 720

Query: 760  QKLSILQAAFGEYNNLDYQSEATSTRPTDREV--EVVVIHGEQPQPTSETEEKFRMDIDE 817
            QKL +LQA  GE + L  +S  T    T++EV  +  VI  +QP+  SE E++FRM IDE
Sbjct: 721  QKLILLQAGLGEDSEL-IKSMVTECPTTEKEVTEDFRVILMDQPETISEIEKRFRMSIDE 779

Query: 818  LLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSD 877
            +LEENLDFWLRFS +F QIQKF+T+V+DL++++     KLEEK+R ++GSS A Y+LKSD
Sbjct: 780  VLEENLDFWLRFSTTFQQIQKFETQVQDLQSEL----LKLEEKKRMEDGSSNAEYSLKSD 835

Query: 878  GRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTS 937
             +PLYK++ EI TELT+W+EK + LK+E+  R +SL +IQ+EIT ALK SAEDD+FKFTS
Sbjct: 836  AKPLYKYLREIHTELTVWLEKSMQLKDEVKGRFTSLCDIQDEITSALKESAEDDEFKFTS 895

Query: 938  YQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQ--- 994
            YQAAKFQGE+LNMKQENNKVA+ELQAGLDH+  LQ+EVE+TL+ L E+F LS +K++   
Sbjct: 896  YQAAKFQGEILNMKQENNKVADELQAGLDHITTLQLEVERTLAKLNEEFKLSGSKNRQNI 955

Query: 995  KLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFRTG 1041
            +L HS SRS VPLRSFIFG K KK R+S F  MHPAL R++  FR+G
Sbjct: 956  QLSHSVSRSRVPLRSFIFGTKPKKHRTSIFSCMHPALYRRH--FRSG 1000

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586659|ref|XP_002533960.1| Myosin-1, putative [Ricinus communis] gi|223526073|gb|EEF28429.1| Myosin-1, putative [Ricinus communis]

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1101 (53%), Positives = 752/1101 (68%), Gaps = 100/1101 (9%)

Query: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
            MLQRAASNAYSWWWASHIRTKQSKW+EQNLQD+EEKV   LKLIEEDGDSFA+RAEMYYK
Sbjct: 1    MLQRAASNAYSWWWASHIRTKQSKWMEQNLQDMEEKVQTVLKLIEEDGDSFARRAEMYYK 60

Query: 61   KRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPF-MDDDDEDPTPRG 119
            KRPELI FVEE+YRAYRALAERYDHISTELQNAN TIA V PEQV F M+DD+++ +PR 
Sbjct: 61   KRPELIHFVEESYRAYRALAERYDHISTELQNANNTIASVFPEQVQFAMEDDEDEASPRF 120

Query: 120  PKKPP-VQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGLK 178
            PKK P V  AN+PKVP +PK +LK + T    KL+  KS KK +   + KSGL K+EGL+
Sbjct: 121  PKKAPEVAKANVPKVPKIPK-ELKNIFTSDKTKLQSKKSMKKTNQHAVSKSGLRKSEGLQ 179

Query: 179  EIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDE 238
            EID+LQKQIL LQT+KEFVKSSYEN LAKYW+IE+ I E+Q++V +LQDEFG G VIED+
Sbjct: 180  EIDRLQKQILALQTEKEFVKSSYENGLAKYWEIEQTITEMQEKVSNLQDEFGAGRVIEDD 239

Query: 239  EARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSK 298
            EARTLMA+AALKSC++TL Q++E+QEKSAEEA IE KRI +AR+K  SLK  F+  E ++
Sbjct: 240  EARTLMASAALKSCQDTLAQLQEKQEKSAEEAMIENKRINNAREKLRSLKDAFVHGEVNQ 299

Query: 299  KIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEK 358
            + P  KD S+  VEE   SD        +R+DLE LR KI E  E GS+ SL+V+E+AEK
Sbjct: 300  ENPQAKDKSINPVEEMKSSDQKPSGVTHERQDLELLRVKISEHFEVGSNASLSVSELAEK 359

Query: 359  IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM 418
            IDE+V+KV++LE S SSQTAL+QRLRTETDELQAQI  LE+DKA+LI+ K DL  KL EM
Sbjct: 360  IDELVNKVISLEASVSSQTALIQRLRTETDELQAQIGILENDKATLIHGKNDLRVKLREM 419

Query: 419  EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELE----------I 468
            EEKL  L +LNRSVEDQN + QT+ TEA  N+DHLS KL   K DEEL+          +
Sbjct: 420  EEKLSGLQELNRSVEDQNNNLQTNFTEAHCNLDHLSEKLHNVKPDEELQATLQTEWGSVV 479

Query: 469  SSENVEKYPLRVELH---------------KEIEGEDAALDPNDDLKELQSAQLSEEIEV 513
            ++E+ E+   R  LH               +++ G++ AL P++   E ++ +L EE++V
Sbjct: 480  ANESHEEVNGREGLHNTKDGNHKSPELSSQEQLRGQEGALKPDESPNEPENVKLHEELKV 539

Query: 514  KILAEEENKSPAKV-QFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEI 572
                ++EN+  A+V + E  ++G                   E  S D I    E   ++
Sbjct: 540  SDSPQKENEYIAEVNKTELKVKG-------------------ELNSEDGIHRSPEMNSQV 580

Query: 573  VSIEESKEQEEKLNHGDVPKKTRDVQTEIVNDTREQELTDT-----PGNQGEVGQNQEND 627
                E + QE  L   D P + ++      N  +E ++ D      P  Q EV  + + +
Sbjct: 581  ----ELRGQESALKPDDSPNEPQN-----ANLHKELKVADAPQKEKPHEQIEVSDSSQKE 631

Query: 628  EPGKPVEGSQKQLKEEMQTEVANDTKEYEL--TDTP-----GSRQEVAGRYQAN------ 674
            +     +  +   KE++ T   N      L  TD P       R E     QA+      
Sbjct: 632  KATCDRKEEEVIKKEDLSTSNRNQGDNVSLLQTDNPLVQSHDIRMEEEADKQASPITSDG 691

Query: 675  ---DEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKKKLDESGVKTR 731
               DE    A +Q+ EPDWK +F  GM NREK +L EYTT LRN+K+ KKKL E+ +   
Sbjct: 692  LFPDETEVQATKQDDEPDWKHLFTNGMGNREKFLLTEYTTALRNFKDVKKKLGEAEMNNA 751

Query: 732  DSN-------DVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATST 784
            D +       D+  +QL EL+SAN +KDE+I+ LRQKLS+LQ + GE    D++SE  ST
Sbjct: 752  DGHKKGDDLFDIT-LQLRELKSANAKKDEQIKLLRQKLSLLQTSLGE----DHESEK-ST 805

Query: 785  RPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVK 844
                 ++E +++  +     S+ EEKFR +IDE+LEENLDFWLRFS++FHQIQKF+TE+K
Sbjct: 806  LTESSKIESMILMDQ--SEMSKMEEKFRSNIDEVLEENLDFWLRFSSTFHQIQKFETEIK 863

Query: 845  DLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKE 904
            DL+++    + KLEEK++KQ+GS+  +++LKSD +PLYKH+ EI TEL +W+EK  LLK+
Sbjct: 864  DLQSE----LVKLEEKKKKQDGSTNQKFSLKSDAKPLYKHLREIHTELAVWLEKSALLKD 919

Query: 905  ELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAG 964
            EL SR SSL +IQEEIT ALK SAEDDDF FTSYQAAKFQGE+LNMKQENNKVA+ELQAG
Sbjct: 920  ELKSRFSSLCDIQEEITSALKESAEDDDFTFTSYQAAKFQGEILNMKQENNKVADELQAG 979

Query: 965  LDHVKNLQIEVEKTLSMLGEKFGLSDAKSQ---KLEHSNSRSSVPLRSFIFGVKQKKQRS 1021
            LDHV  LQ+EVEKTL+ L ++F LS +K+Q   +L+HS+SRS VPLRSFIFG+K K+QR 
Sbjct: 980  LDHVTTLQLEVEKTLAKLNDEFKLSGSKNQSNIQLQHSDSRSRVPLRSFIFGIKPKRQRH 1039

Query: 1022 SFFFSMHPALTRKYNGFRTGV 1042
            S F  +HP L RKYNGF++GV
Sbjct: 1040 SIFSCVHPVLQRKYNGFKSGV 1060

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186502305|ref|NP_179842.2| Kinase interacting (KIP1-like) family protein [Arabidopsis thaliana] gi|330252228|gb|AEC07322.1| Kinase interacting (KIP1-like) family protein [Arabidopsis thaliana]

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1046 (49%), Positives = 689/1046 (65%), Gaps = 116/1046 (11%)

Query: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
            MLQRAASNAYSWWWASHIRTKQSKWLEQNLQD+EEKV Y LKL++EDGDSFAKRAEMYYK
Sbjct: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDIEEKVQYVLKLLQEDGDSFAKRAEMYYK 60

Query: 61   KRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGP 120
            KRPELISFVEE+YRAYRALAERYDHISTELQNANTTIA V P+QVP    DD+    +  
Sbjct: 61   KRPELISFVEESYRAYRALAERYDHISTELQNANTTIASVFPDQVPNFAMDDDIDMSKFA 120

Query: 121  KKPPVQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKLV---KSGLSKAEGL 177
            K+  +  AN+P VP LP KDLK  + +A KKL+P KS K    +  V    SGLSK E +
Sbjct: 121  KRSNISGANVPNVPKLPVKDLKSAVRVATKKLQPRKSMKYTGGSTNVVVKSSGLSKPEAM 180

Query: 178  KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIED 237
             EIDKLQK+IL LQT+KEFVKSSYE  L+KYW+ E+ IKE Q+R+  LQDEFG+ + IED
Sbjct: 181  GEIDKLQKEILALQTEKEFVKSSYEIGLSKYWEFEKGIKEKQERICGLQDEFGESVAIED 240

Query: 238  EEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGS 297
            EEAR LM   A+KSC+E L +++E+QEKS EEA+ E  +IK++++K  S+  +F+G+E  
Sbjct: 241  EEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKEKLRSMASQFLGDES- 299

Query: 298  KKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAE 357
                  KDD    V  +   D ++   ++ +++LES++EKI+E  E G++ SL  T+MAE
Sbjct: 300  ---VFAKDDG-DEVRRTAELDHEIKEMSRKKKELESVKEKIREHFESGANSSLNGTDMAE 355

Query: 358  KIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE 417
            K+DE+V+KV++LE++ SSQTAL+QRLR ET+ LQ QI TLE DKA L +DK DL +KL E
Sbjct: 356  KVDELVNKVISLESAVSSQTALIQRLRNETNGLQTQISTLETDKALLADDKSDLRNKLKE 415

Query: 418  MEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS----HKLKIQKTDEELEISSENV 473
            MEEKL  L DL+R+V D++ + QTH  +A +N+D+LS    H++K +   + L IS    
Sbjct: 416  MEEKLKALQDLDRNVLDKSSNLQTHFDDACHNLDNLSGGNLHEVKPESESDNLAIS---- 471

Query: 474  EKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPAK-VQFEKG 532
                  +E  K++EGE   LD ++++KE Q          K   EE+ ++P K V+FE+ 
Sbjct: 472  ------IEPQKDLEGEKRTLDISEEIKEHQ----------KETGEEKKEAPVKSVKFEQT 515

Query: 533  IEGSEGLANIASEN-LHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGDVP 591
                   A IA ++ + +  PD   +S++ + ++                   L   D  
Sbjct: 516  RN-----ATIAEDSTIPSTNPDTVLESTEKVDSD-------------------LEKQDAS 551

Query: 592  KKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVAND 651
             KT  V   ++ +    + TD+                          L   ++ +  +D
Sbjct: 552  DKTDSVLDNVLENQAASDQTDSV-------------------------LDSVLEKQGESD 586

Query: 652  TKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTT 711
                ++   P +  E       N E ++   E+E EPDWKEMF+KGMENREK +L EYTT
Sbjct: 587  ----KIDSVPSNVSEKESDISFNGEQQEDQKEKEGEPDWKEMFMKGMENREKHLLTEYTT 642

Query: 712  VLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGE 771
            +LRN+K+ KK LDE+  K              +++ N  KD+EI+ LR+K+S+LQ   G+
Sbjct: 643  ILRNFKDMKKTLDETKTK--------------MKTENATKDDEIKLLREKMSLLQKGLGD 688

Query: 772  YNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDFWLRFSA 831
             N+L         + ++ +  +  +  E  Q  S  EE+FR++IDELLEENLDFWLRFS 
Sbjct: 689  SNDL------MENQLSNDDYSIGFMAAEN-QNMSLVEEQFRLNIDELLEENLDFWLRFST 741

Query: 832  SFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYKHMGEIQTE 891
            +F QIQ +DT ++DL+ +ISKL     E++RKQ+GSSTA+YAL+SD RPLY H+ EI T+
Sbjct: 742  AFGQIQSYDTSIEDLQAEISKL-----EQRRKQDGSSTAKYALRSDVRPLYVHLREINTD 796

Query: 892  LTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEVLNMK 951
            L LW+EK   LKEEL SR  SL NIQ+EITKALK+SAEDDDF+FTSYQAAKFQGEVLNMK
Sbjct: 797  LGLWLEKGAALKEELKSRFESLCNIQDEITKALKSSAEDDDFRFTSYQAAKFQGEVLNMK 856

Query: 952  QENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQK---LEHSNSRSSVPLR 1008
            QENNKVA+ELQAGLDH+  LQ+EV+KTL  L ++F LS +K++    L+HS+SRS VPLR
Sbjct: 857  QENNKVADELQAGLDHITTLQLEVDKTLGKLIDEFALSGSKNKSDLDLQHSDSRSRVPLR 916

Query: 1009 SFIFGVKQKKQRSSFFFSMHPALTRK 1034
            SFIFG KQK+ + S F  MHP+L RK
Sbjct: 917  SFIFGSKQKRAKPSIFSCMHPSLYRK 942

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497694|ref|XP_003517694.1| PREDICTED: uncharacterized protein LOC100787852 [Glycine max]

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1055 (49%), Positives = 700/1055 (66%), Gaps = 79/1055 (7%)

Query: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
            MLQRAASNAYSWWW SHIRTKQSKW+EQNL D+EEKV   LKL+EE+GDSFAKRAEMYYK
Sbjct: 1    MLQRAASNAYSWWWVSHIRTKQSKWMEQNLLDMEEKVQTVLKLLEEEGDSFAKRAEMYYK 60

Query: 61   KRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPR-G 119
            +RPELISFVEE+++AYRALAERYDHISTELQNAN TIA V P++VPFMD++D+D +PR  
Sbjct: 61   RRPELISFVEESFKAYRALAERYDHISTELQNANNTIASVFPDRVPFMDEEDDDGSPRPS 120

Query: 120  PKKPPVQTANIPKVPNLPKKDLKGMITL--ANKKLRPSK--SSKKASAAKLVKSGLSKAE 175
             KK      NIPK    P KDLK +IT   A +K    K  ++  ++A K+ KSGLS+ E
Sbjct: 121  RKKAEGFKTNIPKP---PIKDLKNVITTAAATRKFHSKKPAATAASAAPKVPKSGLSRKE 177

Query: 176  GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVI 235
             L+E+DKLQKQIL LQT KEFVK+SY+N +A+YW+ +EQIKELQ+RV +LQDE G+G+ I
Sbjct: 178  ALEEVDKLQKQILALQTVKEFVKNSYDNSIARYWETDEQIKELQERVSTLQDELGEGVDI 237

Query: 236  EDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNE 295
            ED+EAR LMA AALKSC+E LTQ++E+QEKS +E +IE KR+KD + K  SL  EF   +
Sbjct: 238  EDDEARRLMAEAALKSCQEALTQLQEKQEKSLDETRIESKRVKDVKAKLGSLMDEFHYEQ 297

Query: 296  GSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEM 355
             + + P V+ D  +  E  D    +    A  +++L+ L+E IKE  E  S+ SL+V EM
Sbjct: 298  SNSEEPRVQRDLKEIAETKDLE--ENAGLAPKKQELQLLKENIKEHFETSSNSSLSVAEM 355

Query: 356  AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKL 415
            AEKIDE+V+KV++LET+ SSQT +V RLRT+TDELQ QIRTLE+DK SLI D+  L+ +L
Sbjct: 356  AEKIDELVNKVISLETAVSSQTVMVTRLRTDTDELQEQIRTLENDKESLIKDRNKLNEQL 415

Query: 416  VEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK-IQKTDEELEIS--SEN 472
             +MEEK+  + DLN+ VED+N + QT   EA  N+D LS K++ +Q+  EE + +  S  
Sbjct: 416  RKMEEKMHGVQDLNQIVEDKNNNLQTQFNEAHSNLDQLSEKVQNVQQPGEEAKTTDLSHT 475

Query: 473  VEKYPLRVELHKEIEGEDAALDPNDDLKELQS-AQLSEEI--------EVKILAEEENKS 523
             +    + EL  + EG+    + N  L +++S  +L+ ++        E+K+    E+  
Sbjct: 476  QKDSSSQAELKSKSEGQVPLNEDNILLNDIKSEKELTNDLVEDDAKDKELKVAGTVEDDV 535

Query: 524  PAKVQFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEE 583
             +  + E          N+     +  K  ++ K + S++ EE + +E  S +E +EQE+
Sbjct: 536  TSDNKLEATGSPFANEPNVTRSLENDAKSVDKVKVTSSLEMEEATPMEKKSPKELEEQEK 595

Query: 584  KLNHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEE 643
             +N G+  K T  V T     T  QE++  P           +++     E S+KQ +  
Sbjct: 596  TVNPGNDEKTTVAVST----TTENQEVSQLPA----------SNKADSSSESSEKQPE-- 639

Query: 644  MQTEVANDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREK 703
                  ND K+        S  E+    + +  P+  A  QE EPDW+++F  GM++RE+
Sbjct: 640  ------NDAKQ--------SSCEIDNALKVD--PKGQATAQEDEPDWQQLFTNGMQDREQ 683

Query: 704  TILAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLS 763
             +L+EYT  LRNYK+ KK+L E   K +DSN  + +QL+EL++AN  KDEEI+ LRQKL 
Sbjct: 684  VLLSEYTNTLRNYKDMKKRLAEIEKKNQDSNSDSSLQLKELKTANAMKDEEIRHLRQKLG 743

Query: 764  ILQAAFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENL 823
            +LQ +     N D+  E              ++  E P+ TS  EEKFR ++DE+LEENL
Sbjct: 744  LLQRSME--GNEDFTEE--------------LLQIEPPESTSPIEEKFRSNMDEVLEENL 787

Query: 824  DFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYK 883
             FWL+FSA + +IQKF+T +KDL  D+SKL      K +  EGSS+ ++++KSD RP+Y+
Sbjct: 788  TFWLKFSAYYSEIQKFETTIKDLLTDLSKLEE----KGKSSEGSSSIKHSIKSDSRPIYR 843

Query: 884  HMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKF 943
            H+ EIQ E+T+W+E+  LLKEEL SR SSL +IQE+IT ALKTSAEDDDF+FTSYQAAKF
Sbjct: 844  HLTEIQNEITVWMERGALLKEELQSRFSSLCDIQEQITSALKTSAEDDDFRFTSYQAAKF 903

Query: 944  QGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQ---KLEHSN 1000
            QGE+LNMKQENNKVA+ELQAGLD V +LQ+E+EK L  L ++FG S +K Q   +L  S 
Sbjct: 904  QGEILNMKQENNKVADELQAGLDGVTSLQLEIEKALVKLNDEFGFSASKRQQNGQLRQSE 963

Query: 1001 SRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKY 1035
            +R+ VPLRSFIFG K KKQ  S F  M P + RKY
Sbjct: 964  TRAKVPLRSFIFGAKPKKQ--SIFSCMTPGMHRKY 996

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529685|ref|XP_003533419.1| PREDICTED: uncharacterized protein LOC100796838 [Glycine max]

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1053 (48%), Positives = 695/1053 (66%), Gaps = 79/1053 (7%)

Query: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
            MLQRAASNAYSWWW SHIRTKQSKW+EQNLQD+EEKV   LKL+EE+GDSFAKRAEMYYK
Sbjct: 1    MLQRAASNAYSWWWVSHIRTKQSKWMEQNLQDMEEKVQTVLKLLEEEGDSFAKRAEMYYK 60

Query: 61   KRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPR-G 119
            +RPELISFVEE+++AYRALAERYDHISTELQNAN TIA V P++VPFMD+D++D +PR  
Sbjct: 61   RRPELISFVEESFKAYRALAERYDHISTELQNANNTIASVFPDRVPFMDEDEDDGSPRPS 120

Query: 120  PKKPPVQTANIPKVPNLPKKDLKGMITLANKKLR----PSKSSKKASAAKLVKSGLSKAE 175
             KK      NIPK    P KDLK +IT A    R       ++  ++A K+ KSGLS+  
Sbjct: 121  RKKAEGFKTNIPKP---PVKDLKSVITTAAATRRLHSKKPAATATSAAPKVPKSGLSRKA 177

Query: 176  GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVI 235
             L+E+DKLQKQIL LQT KEFVK+SY+N +AKYW+ +EQIKELQ+RV  LQDE G+G+ I
Sbjct: 178  ALEEVDKLQKQILALQTVKEFVKNSYDNSVAKYWETDEQIKELQERVSILQDELGEGVDI 237

Query: 236  EDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNE 295
            ED+EAR LMA AALKSC+E LTQ++E+QEKS +E +IE KR+KD      SL  EF  ++
Sbjct: 238  EDDEARRLMAEAALKSCQEALTQLQEKQEKSLDETRIESKRVKDVNSMLGSLMEEFHYDQ 297

Query: 296  GSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEM 355
             + + P V+ D  +  E  D    +  R  Q +++L+ L+E IKE  E  S+ SL+V EM
Sbjct: 298  NNSEKPRVQRDLKEIAETKDLE--ENARLTQKKQELQLLKENIKEHFETSSNSSLSVAEM 355

Query: 356  AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKL 415
            AE+IDE+V+KV+ LET+ SSQ+ +V+RL T+TDEL  QIRTLE+DK SLI DK  L+ +L
Sbjct: 356  AEQIDELVNKVIRLETAVSSQSVMVKRLTTDTDELHEQIRTLENDKESLIKDKNKLNDQL 415

Query: 416  VEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEIS--SENV 473
             ++EEK+  + DLN+++EDQN + QT   EA  N+DHLS K++  +  EE + +  S   
Sbjct: 416  RKLEEKMHGVQDLNQTIEDQNSNLQTQFNEALSNLDHLSEKVQNVQPGEEAKTTDLSHTQ 475

Query: 474  EKYPLRVELHKEIEGEDAALDPNDDL---KELQSAQLSE-----EIEVKILAEEENKSPA 525
            +    + EL  + EG+   L+ ++ L   KE+ +  + +     E++V    E++  S  
Sbjct: 476  KDSSTQAELKIKSEGQ-VPLNQDNMLLNDKEITNGLVEDDATDKELKVAGTVEDDATSDN 534

Query: 526  KVQFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKL 585
            K +       SE   N+     +  K   E K + S++ +E + VE  S +E ++QE+ +
Sbjct: 535  KPEVTGSPSASE--PNVTGSLENDAKSANEVKVTSSLEMDEATPVENKSPKELEKQEKTV 592

Query: 586  NHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQ 645
            + G+             +D +      T   + +V Q+  +++     E S+KQ +    
Sbjct: 593  HPGN-------------DDEKATVSMSTTTEKQDVSQHLASNKADSSSESSEKQQE---- 635

Query: 646  TEVANDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTI 705
                ND K+        S +E+    + +  P+  A  QE EPDW+++F  GM++RE+ +
Sbjct: 636  ----NDDKQ--------SSREIENVLKVD--PKGQATAQEDEPDWRQLFTSGMQDREQVL 681

Query: 706  LAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSIL 765
            L EYT  LRNYKE KK+L E   K +D+N  + +QL EL+++N  KDEEI+ LRQKL + 
Sbjct: 682  LTEYTNTLRNYKEVKKRLTEIEKKNQDNNSDSSLQLNELKTSNAMKDEEIRLLRQKLGLQ 741

Query: 766  QAAFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDF 825
            Q +     N D+  E              ++  E P+ TS  EEKFR ++DE+LEENL F
Sbjct: 742  QRSM--EGNEDFTEE--------------LLQIELPESTSLIEEKFRSNMDEILEENLTF 785

Query: 826  WLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYKHM 885
            WL+FSA + +IQKF+T +KDL  ++    SKLEE+++  EGSS+ +Y++KSD RP+YKH+
Sbjct: 786  WLKFSAYYSEIQKFETTIKDLLTEL----SKLEEREKSSEGSSSIKYSIKSDSRPIYKHL 841

Query: 886  GEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQG 945
             EIQ+E+T+W+EK  LLKEEL SR SSL +IQEEIT  LK+SAEDDDF+FTSYQAAKFQG
Sbjct: 842  TEIQSEITVWMEKGALLKEELQSRFSSLCDIQEEITTELKSSAEDDDFRFTSYQAAKFQG 901

Query: 946  EVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQ---KLEHSNSR 1002
            E+LNMKQENNKVA+ELQ GLD V +LQ+E+EK L  L +KFG S +K Q   +L  S +R
Sbjct: 902  EILNMKQENNKVADELQTGLDGVTSLQLEIEKALVKLNDKFGFSASKRQQNGQLRQSETR 961

Query: 1003 SSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKY 1035
            + VPLRSFIFG K KKQ  S F  M P + RKY
Sbjct: 962  AKVPLRSFIFGAKPKKQ--SIFSCMTPGMHRKY 992

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496916|ref|XP_003635370.1| PREDICTED: uncharacterized protein LOC100853146 [Vitis vinifera]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1081 (47%), Positives = 678/1081 (62%), Gaps = 154/1081 (14%)

Query: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
            MLQRAASNAYSWWWASHIRTKQSKWLEQ+LQD+EEKV   LKLI+EDGDSFAKRAEMYYK
Sbjct: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQHLQDMEEKVQNMLKLIQEDGDSFAKRAEMYYK 60

Query: 61   KRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPF-MDDDDEDPTPRG 119
            +RPELI+FVEE Y++YRALAERYD ISTELQNAN T+A + PEQV F MD+DDED TP+ 
Sbjct: 61   RRPELINFVEETYKSYRALAERYDKISTELQNANNTLASIFPEQVQFAMDEDDEDCTPQC 120

Query: 120  PKKP-PVQTANIPKVPNLP-KKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGL 177
             K+   +  +N P+VP  P KKD+KG++TLA KKL+  K   KA+A  + KSGL+K E L
Sbjct: 121  RKECRELSQSNAPQVPKAPGKKDVKGLLTLATKKLQQKKI--KAAAPAVPKSGLTKPEAL 178

Query: 178  KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIED 237
            KEID+LQK IL LQT+KEFVKSSYE  LAKYW+IE+QI E+Q++   LQDEF   + IED
Sbjct: 179  KEIDRLQKGILALQTEKEFVKSSYEIGLAKYWEIEKQITEMQEKNSRLQDEFNASLAIED 238

Query: 238  EEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGS 297
            E+AR LMA  AL+SC+ TL  +++ QE++ EE K+ R+RI +AR+K +S K+        
Sbjct: 239  EDARNLMATTALRSCQMTLDNLQKTQEETVEEVKMGRQRITEAREKLDSFKN-------- 290

Query: 298  KKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAE 357
                            +     D  ++    E LESL E++KEQ E G + SLT+TEMAE
Sbjct: 291  ----------------NQEKPCDNHKSTGAEETLESLDEEMKEQFEMGLNPSLTMTEMAE 334

Query: 358  KIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE 417
            KIDE+V+KV++L+T  SSQTALV+RLRTET ELQ +I ++EDDK +L    K+L   L E
Sbjct: 335  KIDELVNKVISLQTVVSSQTALVKRLRTETGELQTKIESMEDDKDTLTGSVKNLGHNLRE 394

Query: 418  MEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYP 477
            +E+KL  + D N++VE +N + QTH TEA  N+D L   L+  K  +EL           
Sbjct: 395  LEKKLHGIQDPNQNVESRNNNLQTHFTEAHRNLDQLFETLQSGKEVDEL----------- 443

Query: 478  LRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPAKVQFEKGIEGSE 537
                                              EVK L++ +  S A+++ +K ++  E
Sbjct: 444  ----------------------------------EVKGLSQHKEASIAELESQKELKKQE 469

Query: 538  GLANIA--SENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGDVPKKTR 595
             + N    SE LH  +   E ++  S+Q E+ S VE    E+S EQ++ ++     K  +
Sbjct: 470  DIPNHGDHSEKLHNMRQGVELEAKVSLQKEQGSLVEAEPQEKSGEQDKPISRNAFQKDEK 529

Query: 596  DVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVANDTKEY 655
                E V+ +   E    P N  E  Q                 LK  +Q E   D K+ 
Sbjct: 530  GKPEETVSRS---EAKSDPDNHSEKCQG----------------LK--LQDEA--DKKDS 566

Query: 656  EL-TDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTTVLR 714
             L  + P   +    + +  DEP           +WK++FL GM++REKT+LAEYT +L+
Sbjct: 567  SLIVNNPLIIKAQEQKTEQEDEP-----------NWKQLFLDGMKDREKTLLAEYTAILK 615

Query: 715  NYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGEYNN 774
            NYKE K+KL E   KT        +Q++EL SAN +KDE+IQSL Q+ S+L+    E  +
Sbjct: 616  NYKEVKQKLSEVEKKT-------TVQVKELESANAKKDEDIQSLHQESSLLRVNLDEEKD 668

Query: 775  L------DYQ--------------------SEATSTRPT----DREVEVVVIHGEQPQPT 804
            L      D+Q                    + A + +PT    D E ++ VI  +Q QP 
Sbjct: 669  LRKSKDSDHQPASTLSGDQNVEPKARTEEETSAVAPKPTENKEDDEEDIKVILIDQAQPM 728

Query: 805  SETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQ 864
            S TEE+FR +ID LLEENL+FWLRFS S HQIQKF TEV+DL+ +ISKL  K    ++KQ
Sbjct: 729  SMTEERFRTNIDTLLEENLNFWLRFSTSVHQIQKFQTEVEDLQTEISKLKEK---VKKKQ 785

Query: 865  EGSSTARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKAL 924
            +GS++   ++KSD RP+YKH+ EIQTEL++W+E+  LLKEEL  R SSL NIQE+I++ L
Sbjct: 786  DGSASIDPSVKSDARPIYKHLREIQTELSVWLEQNALLKEELQQRFSSLCNIQEDISRTL 845

Query: 925  KTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGE 984
            K    D++ KFTSYQAAK QGEV+NM+QENNKVA ELQAGLDHV+ LQ +VEKTL+ L E
Sbjct: 846  KEGPGDEEIKFTSYQAAKLQGEVMNMQQENNKVAGELQAGLDHVRGLQTKVEKTLTKLNE 905

Query: 985  KFGLSDAKSQ---KLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFRTG 1041
            +FGL+ +K+    +L HS SR  VPL+SFIFGVK KKQ+ S F  M+P+L RKY+  + G
Sbjct: 906  EFGLAGSKNNNHIQLTHSTSRGRVPLQSFIFGVKPKKQKPSIFSCMNPSLHRKYHHMKAG 965

Query: 1042 V 1042
            +
Sbjct: 966  L 966

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4544438|gb|AAD22346.1| hypothetical protein [Arabidopsis thaliana]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/990 (47%), Positives = 632/990 (63%), Gaps = 116/990 (11%)

Query: 57   MYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPT 116
            MYYKKRPELISFVEE+YRAYRALAERYDHISTELQNANTTIA V P+QVP    DD+   
Sbjct: 1    MYYKKRPELISFVEESYRAYRALAERYDHISTELQNANTTIASVFPDQVPNFAMDDDIDM 60

Query: 117  PRGPKKPPVQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKLV---KSGLSK 173
             +  K+  +  AN+P VP LP KDLK  + +A KKL+P KS K    +  V    SGLSK
Sbjct: 61   SKFAKRSNISGANVPNVPKLPVKDLKSAVRVATKKLQPRKSMKYTGGSTNVVVKSSGLSK 120

Query: 174  AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI 233
             E + EIDKLQK+IL LQT+KEFVKSSYE  L+KYW+ E+ IKE Q+R+  LQDEFG+ +
Sbjct: 121  PEAMGEIDKLQKEILALQTEKEFVKSSYEIGLSKYWEFEKGIKEKQERICGLQDEFGESV 180

Query: 234  VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIG 293
             IEDEEAR LM   A+KSC+E L +++E+QEKS EEA+ E  +IK++++K  S+  +F+G
Sbjct: 181  AIEDEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKEKLRSMASQFLG 240

Query: 294  NEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVT 353
            +E        KDD    V  +   D ++   ++ +++LES++EKI+E  E G++ SL  T
Sbjct: 241  DES----VFAKDDG-DEVRRTAELDHEIKEMSRKKKELESVKEKIREHFESGANSSLNGT 295

Query: 354  EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSS 413
            +MAEK+DE+V+KV++LE++ SSQTAL+QRLR ET+ LQ QI TLE DKA L +DK DL +
Sbjct: 296  DMAEKVDELVNKVISLESAVSSQTALIQRLRNETNGLQTQISTLETDKALLADDKSDLRN 355

Query: 414  KLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS----HKLKIQKTDEELEIS 469
            KL EMEEKL  L DL+R+V D++ + QTH  +A +N+D+LS    H++K +   + L IS
Sbjct: 356  KLKEMEEKLKALQDLDRNVLDKSSNLQTHFDDACHNLDNLSGGNLHEVKPESESDNLAIS 415

Query: 470  SENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPAK-VQ 528
                      +E  K++EGE   LD ++++KE Q          K   EE+ ++P K V+
Sbjct: 416  ----------IEPQKDLEGEKRTLDISEEIKEHQ----------KETGEEKKEAPVKSVK 455

Query: 529  FEKGIEGSEGLANIASEN-LHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNH 587
            FE+        A IA ++ + +  PD   +S++ + ++                   L  
Sbjct: 456  FEQTRN-----ATIAEDSTIPSTNPDTVLESTEKVDSD-------------------LEK 491

Query: 588  GDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTE 647
             D   KT  V   ++ +    + TD+  +     Q + +     P   S+K+       E
Sbjct: 492  QDASDKTDSVLDNVLENQAASDQTDSVLDSVLEKQGESDKIDSVPSNVSEKESDISFNGE 551

Query: 648  VANDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILA 707
               D KE                             +E EPDWKEMF+KGMENREK +L 
Sbjct: 552  QQEDQKE-----------------------------KEGEPDWKEMFMKGMENREKHLLT 582

Query: 708  EYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSILQA 767
            EYTT+LRN+K+ KK LDE+  K              +++ N  KD+EI+ LR+K+S+LQ 
Sbjct: 583  EYTTILRNFKDMKKTLDETKTK--------------MKTENATKDDEIKLLREKMSLLQK 628

Query: 768  AFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDFWL 827
              G+ N+L         + ++ +  +  +  E  Q  S  EE+FR++IDELLEENLDFWL
Sbjct: 629  GLGDSNDL------MENQLSNDDYSIGFMAAEN-QNMSLVEEQFRLNIDELLEENLDFWL 681

Query: 828  RFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYKHMGE 887
            RFS +F QIQ +DT ++DL+ +ISKL     E++RKQ+GSSTA+YAL+SD RPLY H+ E
Sbjct: 682  RFSTAFGQIQSYDTSIEDLQAEISKL-----EQRRKQDGSSTAKYALRSDVRPLYVHLRE 736

Query: 888  IQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQAAKFQGEV 947
            I T+L LW+EK   LKEEL SR  SL NIQ+EITKALK+SAEDDDF+FTSYQAAKFQGEV
Sbjct: 737  INTDLGLWLEKGAALKEELKSRFESLCNIQDEITKALKSSAEDDDFRFTSYQAAKFQGEV 796

Query: 948  LNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQK---LEHSNSRSS 1004
            LNMKQENNKVA+ELQAGLDH+  LQ+EV+KTL  L ++F LS +K++    L+HS+SRS 
Sbjct: 797  LNMKQENNKVADELQAGLDHITTLQLEVDKTLGKLIDEFALSGSKNKSDLDLQHSDSRSR 856

Query: 1005 VPLRSFIFGVKQKKQRSSFFFSMHPALTRK 1034
            VPLRSFIFG KQK+ + S F  MHP+L RK
Sbjct: 857  VPLRSFIFGSKQKRAKPSIFSCMHPSLYRK 886

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497561|ref|XP_002265226.2| PREDICTED: uncharacterized protein LOC100264974 [Vitis vinifera]

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1024 (47%), Positives = 653/1024 (63%), Gaps = 116/1024 (11%)

Query: 33   LEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQN 92
            +EEKV   LKLI+EDGDSFAKRAEMYYK+RPELI+FVEE Y++YRALAERYD ISTELQN
Sbjct: 1    MEEKVQNMLKLIQEDGDSFAKRAEMYYKRRPELINFVEETYKSYRALAERYDKISTELQN 60

Query: 93   ANTTIARVCPEQVPF-MDDDDEDPTPRGPKKP-PVQTANIPKVPNLP-KKDLKGMITLAN 149
            AN T+A + PEQV F MD+DDED TP+  K+   +  +N P+VP  P KKD+KG++TLA 
Sbjct: 61   ANNTLASIFPEQVQFAMDEDDEDCTPQCRKECRELSQSNAPQVPKAPGKKDVKGLLTLAT 120

Query: 150  KKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYW 209
            KKL+  K   K SA  + KSGL+K E LKEID+LQK IL LQT+KEFVKSSYE  LAKYW
Sbjct: 121  KKLQQKKI--KTSAPAVPKSGLTKPEALKEIDRLQKGILALQTEKEFVKSSYEIGLAKYW 178

Query: 210  DIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEE 269
            +IE+QI E+Q++   LQDEF   + IEDE+AR LMA  AL+SC+ TL  +++ QE++ EE
Sbjct: 179  EIEKQITEMQEKNSRLQDEFNASLAIEDEDARNLMATTALRSCQMTLDNLQKTQEETVEE 238

Query: 270  AKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDR- 328
             K+ R+RI +AR+K +S K+       +++ P     S  A E  +  D +V    Q+  
Sbjct: 239  VKMGRQRITEAREKLDSFKN-------NQEKPCDNHKSTGAEETLESLDEEVGSATQEEG 291

Query: 329  EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETD 388
            ++LE LR+K+KEQ E G + SLT+TEMAEKIDE+V+KV++L+T  SSQTALV+RLRTET 
Sbjct: 292  QELELLRKKMKEQFEMGLNPSLTMTEMAEKIDELVNKVISLQTVVSSQTALVKRLRTETG 351

Query: 389  ELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARY 448
            ELQ +I ++EDDK +L    K+L   L E+E+KL  + D N++VE +N + QTH TEA  
Sbjct: 352  ELQTKIESMEDDKDTLTGSVKNLGHNLRELEKKLHGIQDPNQNVESRNNNLQTHFTEAHR 411

Query: 449  NIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLS 508
            N+D L   L+  K  +EL                                          
Sbjct: 412  NLDQLFETLQSGKEVDEL------------------------------------------ 429

Query: 509  EEIEVKILAEEENKSPAKVQFEKGIEGSEGLANIA--SENLHAEKPDEEFKSSDSIQNEE 566
               EVK L++ +  S A+++ +K ++  E + N    SE LH  +   E ++  S+Q E+
Sbjct: 430  ---EVKGLSQHKEASIAELESQKELKKQEDIPNHGDHSEKLHNMRQGVELEAKVSLQKEQ 486

Query: 567  ESTVEIVSIEESKEQEEKLNHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQEN 626
             S VE    E+S EQ++ ++     K  +    E V+ +   E  + P N  E  Q    
Sbjct: 487  GSLVEAEPQEKSGEQDKPISGNAFQKDEKGKPEETVSRS---EAKNDPDNHSEKCQG--- 540

Query: 627  DEPGKPVEGSQKQLKEEMQTEVANDTKEYEL-TDTPGSRQEVAGRYQANDEPRKLAAEQE 685
                         LK  +Q E   D K+  L  + P   +    + +  DEP        
Sbjct: 541  -------------LK--LQDEA--DKKDSSLIVNNPLIIEAQEQKTEQEDEP-------- 575

Query: 686  CEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELR 745
               +WK++FL GM++REKT+LAEYT +L+NYKE K+KL E   KT        +Q++EL 
Sbjct: 576  ---NWKQLFLDGMKDREKTLLAEYTAILKNYKEVKQKLSEVEKKT-------TVQVKELE 625

Query: 746  SANTEKDEEIQSLRQKLSILQAAFGEYNNL----DYQSEATSTRPTDREVEVVVIHGEQP 801
            SAN +KDE+IQSL Q+ S+L+ +  E  +L    D   +  ST   D  ++V++I  +Q 
Sbjct: 626  SANAKKDEDIQSLHQESSLLRVSLDEEKDLRKSKDSDHQPASTLSED--IKVILI--DQA 681

Query: 802  QPTSETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQ 861
            QP S TEE+FR +ID LLEENL+FWLRFS S HQIQKF TEV+DL+ +ISKL  K    +
Sbjct: 682  QPMSVTEERFRTNIDTLLEENLNFWLRFSTSVHQIQKFQTEVEDLQTEISKLKEK---VK 738

Query: 862  RKQEGSSTARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEIT 921
            +KQ+GS++   ++KSD RP+YKH+ EIQTEL++W+E+  LLKEEL  R SSL +IQE+I+
Sbjct: 739  KKQDGSASIDPSVKSDARPIYKHLREIQTELSVWLEQNALLKEELQQRFSSLCSIQEDIS 798

Query: 922  KALKTSAEDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSM 981
            + LK    D++ KFTSYQAAK QGEV+NM+QENNKVA ELQAGLDHV+ LQ EVEKTL+ 
Sbjct: 799  RTLKEGPGDEEIKFTSYQAAKLQGEVMNMQQENNKVAGELQAGLDHVRGLQTEVEKTLTK 858

Query: 982  LGEKFGLSDAKSQ---KLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGF 1038
            L E+FGL+ +K+    +L HS SR  VPL+SFIFGVK KKQ+ S F  M+P+L RKYN  
Sbjct: 859  LNEEFGLAGSKNNNHIQLTHSTSRGRVPLQSFIFGVKPKKQKPSIFSCMNPSLHRKYNHM 918

Query: 1039 RTGV 1042
            + G+
Sbjct: 919  KAGL 922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13936326|gb|AAK40247.1| kinase interacting protein 1 [Petunia integrifolia]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/1062 (44%), Positives = 665/1062 (62%), Gaps = 115/1062 (10%)

Query: 1    MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
            MLQRAASNAYSWW ASHIRTKQSKWLEQ+L D++ +V   +KLIEEDGDSFAKRAEMYYK
Sbjct: 1    MLQRAASNAYSWWAASHIRTKQSKWLEQSLHDMQGRVESVIKLIEEDGDSFAKRAEMYYK 60

Query: 61   KRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPF-MDDDDEDPTPRG 119
            KRPELI+FVEE+YRAYRALAERYDH+S ELQ AN TIA + PEQ+   MD++DE   P+ 
Sbjct: 61   KRPELINFVEESYRAYRALAERYDHLSKELQTANNTIATIFPEQIQLAMDEEDEYGAPKM 120

Query: 120  PK---KPPVQTANIPKV-PNLPKKDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAE 175
            PK   + P   +NIPKV P  P KDLKG+++ A+K+ +  +SSK   AA   KSGLSK E
Sbjct: 121  PKDFLQMPASGSNIPKVPPKAPIKDLKGLMSTASKQKQGKQSSKIEDAA---KSGLSKNE 177

Query: 176  GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVI 235
             ++EIDKLQK IL LQT KEF++SSY++ L K+  +E QI E QQ++  L+DEFG+G VI
Sbjct: 178  AIEEIDKLQKDILALQTMKEFIRSSYQSSLEKFRGLENQIMEKQQKICELEDEFGEGRVI 237

Query: 236  EDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNE 295
            ED EA TLMA AAL+SC+ET+TQ++E+QE   +EA+ E K+I+DA +K  S +H+++G++
Sbjct: 238  EDAEACTLMAEAALQSCQETVTQLQEKQESYTQEAREEFKKIEDACNKLNSFRHKYLGDQ 297

Query: 296  GSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEM 355
              +   +     +  ++E D+             ++ESL+EKIK+Q++  S GSLT++++
Sbjct: 298  IDEAKVY-----ISPIQEVDK-------------EIESLQEKIKDQIDATSKGSLTMSQL 339

Query: 356  AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKL 415
            AEKIDE+V+KVV+LET+ SSQT L++R R E DELQAQ++TLEDDKA+L  D  +L+ ++
Sbjct: 340  AEKIDELVNKVVSLETAVSSQTLLLERFRAEADELQAQVQTLEDDKAAL-TDTHNLNIRV 398

Query: 416  VEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEK 475
              +E KL  + +LN+ V +QN   +TH  EAR NIDHLS KL   + DEE+    +  + 
Sbjct: 399  TAIEAKLQNIENLNKDVVNQNSCLRTHFVEARANIDHLSDKLSSVQPDEEI----DGTDS 454

Query: 476  YPLRVELHKEIEGEDAALDPND------DLKELQSAQLSEEIEVKILAEEENKSPAKVQF 529
             P +V    EI+ E+ +L   D       LK L + +      +  +  E  KS + ++ 
Sbjct: 455  SPDQVIALAEIKLEEESLKQKDHPSSAEGLKNLSTIKAEGPKNLSTIKTEGPKSLSTIK- 513

Query: 530  EKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGD 589
                  +EG  N+++  + AE P    K+  +I+ E   ++  +  E             
Sbjct: 514  ------AEGPKNLST--IKAEGP----KNLSTIKTEGPKSLSTIETE------------- 548

Query: 590  VPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVA 649
            VPK    ++TE   + R+Q+ + T  +  +            P E   +++  +     +
Sbjct: 549  VPKNLSTIKTE-DKEVRKQQGSSTVVSDKKTTMKHVTFAQPTPAEKGDEKVSAQ-----S 602

Query: 650  NDTKEYELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEY 709
             +T  YE T T  S                  AE++ E +W++M L G++++E  +L EY
Sbjct: 603  GNTSVYE-THTQKS------------------AEKDDELNWQQMLLSGLDDKENILLNEY 643

Query: 710  TTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAF 769
            T +L+NYKE  KKL +   K RD+     +Q  EL+SA  ++DEEI +LRQKLS++Q   
Sbjct: 644  TAILKNYKEVTKKLSDIEKKDRDTEFELTLQTRELKSAIAKRDEEIHNLRQKLSLMQQGN 703

Query: 770  GEYNN------LDYQ--SEATSTRP--------TDREVEVVVIHGEQPQPTSETEEKFRM 813
               N       LD    S A   +P         D E +V  I  +Q    S  E K RM
Sbjct: 704  ASENKALKEELLDPSDPSSARGLKPEDLPQIKDGDDEEDVKTILVDQRATVSPLEGKLRM 763

Query: 814  DIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYA 873
             ID +L+ENLDFWLRFS++FHQIQKF T V DL+N+ISK       + ++ +G+S  R  
Sbjct: 764  SIDAILDENLDFWLRFSSAFHQIQKFKTTVHDLQNEISK------ARDKEMQGNS-PRVD 816

Query: 874  LKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDF 933
            +KS+ RPLYKHM EIQ ELT+W+E+ L LK+EL  R S+L +IQEEI+K LK   ED+  
Sbjct: 817  VKSEIRPLYKHMKEIQNELTVWLEQTLSLKDELERRFSALCSIQEEISKGLKEEVEDET- 875

Query: 934  KFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKS 993
             F+S+QAAKFQGEVLNMK EN KV EEL+AG+  V  LQ +VEKT++ L ++FGL+  +S
Sbjct: 876  TFSSHQAAKFQGEVLNMKHENKKVREELEAGISRVTILQEDVEKTVTQLDQEFGLTGNQS 935

Query: 994  QKLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKY 1035
            Q L  S S+S +PL+SFIFG K KK++ S F  M+P   RK+
Sbjct: 936  Q-LMQSVSKSRIPLQSFIFGTKPKKEKRSLFSRMNP--NRKF 974

Source: Petunia integrifolia

Species: Petunia integrifolia

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772118|emb|CAN60244.1| hypothetical protein VITISV_010189 [Vitis vinifera]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/1064 (42%), Positives = 620/1064 (58%), Gaps = 182/1064 (17%)

Query: 53   KRAEMYYKKRPELISFVEEAYRAYRALAERYDHISTELQNANTTIARVCPEQVPFMDDDD 112
            +RAEMYY+KRPELI+ VEE +RAYRA+AERYDH+S ELQ+AN TIA V PE+V F  DD+
Sbjct: 136  QRAEMYYRKRPELINLVEEYFRAYRAIAERYDHLSRELQHANRTIATVYPEKVQFAMDDE 195

Query: 113  EDPTPRG-----PKK-PPVQTANIPKVPNLPKKDLKGMITLANKKLRPSKSSKKASAAKL 166
            E+  P+G     PK  P +  + IPK+PN+PKKD    +T++             S    
Sbjct: 196  EENVPKGSGDTLPKALPSLPKSTIPKIPNIPKKDF---LTIS-------------SIIAA 239

Query: 167  VKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQ 226
              SGLSK E L EIDK+QK+IL LQT+KEFVKSSYE   A+YW+IE QI E+Q RV  LQ
Sbjct: 240  TCSGLSKTEALDEIDKIQKEILMLQTEKEFVKSSYERGAARYWEIESQITEMQSRVSDLQ 299

Query: 227  DEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFES 286
            DEFG G VIED+EAR+LM+  ALKSC+ TL Q++E+QE+ AEEA++ER+++K+ R+K ++
Sbjct: 300  DEFGIGTVIEDDEARSLMSTTALKSCQGTLAQLQEKQERVAEEARVERQKLKETREKLQA 359

Query: 287  LKHEFIGNEGSKKIPHVKDDSVKA-------VEESDRSDIDVVRTAQDREDLESLREKIK 339
            LKH+F+ N+ +++  H +D    +       +EE + S      T     DLE LREKIK
Sbjct: 360  LKHQFLPNQ-TQQPQHSQDHETLSHQFLPNQMEELELSTEQESLTTSVDMDLELLREKIK 418

Query: 340  EQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLED 399
            EQLE  S  ++T  ++AE+IDE+V KV+ LE + SSQTALV+RLR ET+ELQ Q+RTLE+
Sbjct: 419  EQLELNSKTTVTAPDVAERIDELVEKVITLEAAVSSQTALVRRLRLETNELQTQVRTLEE 478

Query: 400  DKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI 459
            +K +LI D   +S+KL+E+EE+L R+  LNRSVEDQN   QTH TEA Y +DHLS KL+ 
Sbjct: 479  NKETLIEDSDKMSTKLIELEEELSRVQSLNRSVEDQNKHLQTHFTEASYALDHLSEKLQG 538

Query: 460  QKTDEEL-EISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAE 518
             K D E  +++    E+  L V   KE E  +      D L +   + LSE++E      
Sbjct: 539  VKLDMEAKDMTWFQEERAVLDVLTEKEFEEHE------DLLPQGNGSALSEDMET----- 587

Query: 519  EENKSPAKVQFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEES 578
                       E+G                  K DE    S S++ EEE+  +       
Sbjct: 588  ----------HEEG------------------KKDENPDYSSSVKAEEENFTQY------ 613

Query: 579  KEQEEKLNHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQ----NQENDEPGKPVE 634
                   N G+V   + +++T               GNQ E G     +     P  P +
Sbjct: 614  -------NPGNVLVTSENMKT---------------GNQEEKGHVPDLSHSAKAPDTPEK 651

Query: 635  GSQKQLKEEMQTEVANDTKEYELTDTPGSRQEVAGRYQAND--EPRKLAAEQECEPDWKE 692
            G  ++LKE+ + E                +QE+     +N   E + L  E+  +P+W++
Sbjct: 652  G--QELKEQKEDE----------------KQELGHPVDSNPDIEDQDLGMEEGDQPNWRQ 693

Query: 693  MFLKGMENREKTILAEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLEELRSANTEKD 752
            +F+ G+E+REK +L EYT++LR+YKE KKKL E+  K RDS   + +Q+ EL++AN  KD
Sbjct: 694  LFINGLEHREKALLDEYTSILRSYKEVKKKLTEAEKKNRDSFFESALQIRELKNANALKD 753

Query: 753  EEIQSLRQKLSI--------------------------------------------LQAA 768
            +EI+SLRQ +S                                              Q+ 
Sbjct: 754  KEIRSLRQNISPQTNPGENWDTSLTEDKPSQQGEAHASISREASSKFSKIPSLNPEQQSV 813

Query: 769  FGEYNNLDYQ-------SEATSTRPTDRE-VEVVVIHGEQPQPTSETEEKFRMDIDELLE 820
             G  +N   Q       SE+    PT  E  E+  I  ++      TEEK R DID++LE
Sbjct: 814  TGSLDNQSIQGKEESTASESMKKSPTKSEQGEIKEIPVDESLAVETTEEKIRADIDDILE 873

Query: 821  ENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRP 880
            ENL+FWLRFS S+HQIQKF T ++DL+ ++ KL     ++ +K EG  T + + KSD RP
Sbjct: 874  ENLEFWLRFSTSYHQIQKFQTSIQDLQAELLKL-----KEDKKNEG-GTKQQSTKSDARP 927

Query: 881  LYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFKFTSYQA 940
            +Y HM EIQTELTLW+E   LLKEEL  R SSL N+QEEI++ L   +   + + + YQA
Sbjct: 928  IYTHMREIQTELTLWLEHNALLKEELQGRFSSLCNLQEEISRILDADSNAQEAELSYYQA 987

Query: 941  AKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLSDAKSQKLEHSN 1000
            AKFQGE+LNMKQEN KV EELQ GLD V+ LQ+EVE+TLS L E F +S +KS      N
Sbjct: 988  AKFQGELLNMKQENKKVKEELQKGLDRVRALQLEVERTLSQLDEDFEISKSKSHPSNWKN 1047

Query: 1001 S--RSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFRTGV 1042
            S  R+ +PLRSF+FGVK KKQ+ SFF  M P L ++Y+    G+
Sbjct: 1048 SVNRTRIPLRSFLFGVKLKKQKPSFFACMSPTLQKQYSDLTAGL 1091

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1043
TAIR|locus:2142554	848	NET2C "AT5G10500" [Arabidopsis	0.412	0.507	0.397	1.1e-129
TAIR|locus:2024271	928	NET2B "AT1G09720" [Arabidopsis	0.452	0.508	0.368	4.5e-122
TAIR|locus:2041203	947	NET2D "AT2G22560" [Arabidopsis	0.470	0.518	0.475	5.9e-112
TAIR|locus:2015302	1246	EMB1674 "AT1G58210" [Arabidops	0.433	0.362	0.331	1e-106
TAIR|locus:2132348	1111	NET1C "AT4G02710" [Arabidopsis	0.103	0.097	0.391	7.1e-22
TAIR|locus:2130210	1710	NET1B "Networked 1B" [Arabidop	0.442	0.270	0.233	1.7e-20
TAIR|locus:2064387	517	NET4B "AT2G30500" [Arabidopsis	0.076	0.154	0.462	3.2e-18
TAIR|locus:2007569	1733	NET1D "AT1G03080" [Arabidopsis	0.418	0.251	0.223	4.1e-18
SGD|S000002216	1790	USO1 "Protein involved in the	0.791	0.461	0.172	2.8e-16
TAIR|locus:2161268	558	NET4A "Networked 4A" [Arabidop	0.074	0.139	0.461	4.6e-15

TAIR|locus:2142554 NET2C "AT5G10500" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 1.1e-129, Sum P(2) = 1.1e-129
 Identities = 180/453 (39%), Positives = 256/453 (56%)

Query:     1 MLQRXXXXXXXXXXXXHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
             ML+R            H+RTKQSKWLE+NLQD+EEKV Y LKL+E++GDSFAKRAEMYYK
Sbjct:     1 MLRRAASNAYSWWWASHVRTKQSKWLEENLQDIEEKVEYALKLLEDEGDSFAKRAEMYYK 60

Query:    61 KRPELISFVXXXXXXXXXXXXXXDHISTELQNANTTIARVCPEQVP-F-MDDDDEDPTPR 118
             +RPELISFV              DHIS ELQNANTTIA V P+QVP F M++DD+D  P 
Sbjct:    61 RRPELISFVEESFKAYRALAERYDHISKELQNANTTIASVFPDQVPEFAMNEDDDDDAPV 120

Query:   119 GPK--KPPVQTANIPKVPNLPKKDLKGMITLANXXXXXXXXXXXXXXXXXXXXXXXXXEG 176
              P+  K      N+PKVP+LP KD +    +                           E 
Sbjct:   121 SPRHHKNKTSNKNVPKVPDLPIKDPEAAKKM---FMSRKAIQEQNASSVVNKSGLSKTEA 177

Query:   177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQG-IVI 235
             ++EIDKLQK+IL LQT+KEFVK+SYEN LAKYW+IE+ I E Q +V SLQDEF +G +VI
Sbjct:   178 VEEIDKLQKEILVLQTEKEFVKTSYENGLAKYWEIEKCIMEKQGKVSSLQDEFDEGAVVI 237

Query:   236 EDEEARTLMAAAALKSCRETLTQMXXXXXXXXXXXXXXRKRIKDARDKFESLKHEFIGN- 294
             ED+EA+ LM+  ALKSC+E L ++              RK+I ++ ++F +L    +G+ 
Sbjct:   238 EDKEAQILMSTTALKSCQEKLEELRDKQEQNVKEVDVSRKQISESTEEFGNLSDALLGDG 297

Query:   295 EGSKKIPHVKD--DSV--KAVEESDRSDIDVVRTAQDREDL--ESLREKIKEQLEFGSSG 348
             +G+ +I   K+  +S+  K  +E D S+     T  D  D   E + + I  +  F S  
Sbjct:   298 KGNHEIYSEKEKLESLGEKVNDEFDDSEAKSCLTIPDVADKIDELVNDVINLENLFSSQA 357

Query:   349 SLTVTEMAEKIDEVVSKVVNLET-SFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND 407
             +L +  + E+ID++ +++  L+  + SSQT     +  +  E++ ++  ++D     + +
Sbjct:   358 AL-IHRLREEIDDLKAQIRALQKENNSSQTDDNMDMGKKLKEMEEKVNGVKDIDQE-VEE 415

Query:   408 KKD-LSSKLVEMEEKLL----RLHDLNRSVEDQ 435
             K D +   L     KL     RL  L +  ED+
Sbjct:   416 KSDNIDKHLTRAHMKLSFLSKRLKSLTQEGEDE 448

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2024271 NET2B "AT1G09720" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 183/497 (36%), Positives = 267/497 (53%)

Query:     1 MLQRXXXXXXXXXXXXHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
             MLQR            HIRTKQSKWLE NLQD+EEKV YTLK+I+ DGDSFAKRAEMYY+
Sbjct:     1 MLQRAASNAYSWWWASHIRTKQSKWLEHNLQDMEEKVKYTLKIIDGDGDSFAKRAEMYYR 60

Query:    61 KRPELISFVXXXXXXXXXXXXXXDHISTELQNANTTIARVCPEQVPF-MDDDDEDPTPRG 119
             KRPE+++FV              DH+STELQ+AN  IA   PE VPF + DDD+D     
Sbjct:    61 KRPEIVNFVEEAFRSYRALAERYDHLSTELQSANHMIATAFPEHVPFPLVDDDDDDDDDN 120

Query:   120 PKKPPVQT------ANIPKVPNLPKKDLKGMITLANXXXXXXXXXXXXXXXXXXXXXXXX 173
             PKKPP          NIP+VP +PKK+ K    +                          
Sbjct:   121 PKKPPKHLHLIPSGTNIPQVPEVPKKEFKSQSLMVLSRKEPGVLQSSETSSALVSSGLSR 180

Query:   174 XEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI 233
              E L+EIDK+ K IL LQT+KEFV+SSYE    +YW++E +++E+Q+RV SLQDEFG G 
Sbjct:   181 EEALEEIDKIHKGILVLQTEKEFVRSSYEQSYDRYWNLENEVEEMQKRVCSLQDEFGVGG 240

Query:   234 VIEDEEARTLMAAAALKSCRETLTQMXXXXXXXXXXXXXXRKRIKDARDKFESLKHEF-I 292
              IED EARTL+A AAL SC+ET+ ++              ++RI  A ++ E+LK +F I
Sbjct:   241 EIEDGEARTLVATAALSSCKETIAKLEETQKRFSEDAGIEKERIDTATERCEALKKKFEI 300

Query:   293 G-NEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-REDLESLREKIKEQLEFGSSGSL 350
                E +KK  H ++ S ++V+ES + D++   +  D  E ++ L EK+        S + 
Sbjct:   301 KVEEQAKKAFHGQESSYESVKESRQIDLNENLSNVDFAEKIDELVEKVVSLETTALSHTA 360

Query:   351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKD 410
              +  +  + +E+   + ++E     +  LV    +++ +++ +I  LED+    +   K+
Sbjct:   361 LLKTLRSETNELQDHIRDVE---KDKACLV----SDSMDMKKRITVLEDE----LRKVKN 409

Query:   411 LSSKLVEMEEKLLRLH--DLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEI 468
             L  + VE + K L  H  + N + +D +   Q    +     D L+ +  IQ+ D   + 
Sbjct:   410 LFQR-VEDQNKNLHKHLTEANSTAKDLSGKLQEVKMDEDVEGDGLNPE-DIQEEDTVEDS 467

Query:   469 SSENVEKYPLRVELHKE 485
              S + E+     E  KE
Sbjct:   468 DSISNEREIKNAEEIKE 484

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041203 NET2D "AT2G22560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
 Identities = 241/507 (47%), Positives = 322/507 (63%)

Query:     1 MLQRXXXXXXXXXXXXHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYK 60
             MLQR            HIRTKQSKWLEQNLQD+EEKV Y LKL++EDGDSFAKRAEMYYK
Sbjct:     1 MLQRAASNAYSWWWASHIRTKQSKWLEQNLQDIEEKVQYVLKLLQEDGDSFAKRAEMYYK 60

Query:    61 KRPELISFVXXXXXXXXXXXXXXDHISTELQNANTTIARVCPEQVP-FMDDDDEDPTPRG 119
             KRPELISFV              DHISTELQNANTTIA V P+QVP F  DDD D + + 
Sbjct:    61 KRPELISFVEESYRAYRALAERYDHISTELQNANTTIASVFPDQVPNFAMDDDIDMS-KF 119

Query:   120 PKKPPVQTANIPKVPNLPKKDLKGMITLANXXXX---XXXXXXXXXXXXXXXXXXXXXEG 176
              K+  +  AN+P VP LP KDLK  + +A                             E 
Sbjct:   120 AKRSNISGANVPNVPKLPVKDLKSAVRVATKKLQPRKSMKYTGGSTNVVVKSSGLSKPEA 179

Query:   177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE 236
             + EIDKLQK+IL LQT+KEFVKSSYE  L+KYW+ E+ IKE Q+R+  LQDEFG+ + IE
Sbjct:   180 MGEIDKLQKEILALQTEKEFVKSSYEIGLSKYWEFEKGIKEKQERICGLQDEFGESVAIE 239

Query:   237 DEEARTLMAAAALKSCRETLTQMXXXXXXXXXXXXXXRKRIKDARDKFESLKHEFIGNEG 296
             DEEAR LM   A+KSC+E L ++                +IK++++K  S+  +F+G+E 
Sbjct:   240 DEEARRLMTETAIKSCQEKLVELQEKQEKSYEEAREEHVKIKESKEKLRSMASQFLGDES 299

Query:   297 SKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMA 356
                    KDD  + V  +   D ++   ++ +++LES++EKI+E  E G++ SL  T+MA
Sbjct:   300 V----FAKDDGDE-VRRTAELDHEIKEMSRKKKELESVKEKIREHFESGANSSLNGTDMA 354

Query:   357 EKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLV 416
             EK+DE+V+KV++LE++ SSQTAL+QRLR ET+ LQ QI TLE DKA L +DK DL +KL 
Sbjct:   355 EKVDELVNKVISLESAVSSQTALIQRLRNETNGLQTQISTLETDKALLADDKSDLRNKLK 414

Query:   417 EMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKY 476
             EMEEKL  L DL+R+V D++ + QTH  +A +N+D+LS    + +   E E  S+N+   
Sbjct:   415 EMEEKLKALQDLDRNVLDKSSNLQTHFDDACHNLDNLSGG-NLHEVKPESE--SDNLA-- 469

Query:   477 PLRVELHKEIEGEDAALDPNDDLKELQ 503
              + +E  K++EGE   LD ++++KE Q
Sbjct:   470 -ISIEPQKDLEGEKRTLDISEEIKEHQ 495

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2015302 EMB1674 "AT1G58210" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 1.0e-106, Sum P(2) = 1.0e-106
 Identities = 164/494 (33%), Positives = 251/494 (50%)

Query:    36 KVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVXXXXXXXXXXXXXXDHISTELQNANT 95
             +V YTLK+I+EDGD+FAKRAEMYY+KRPE+++FV              DH+S ELQ+AN 
Sbjct:   335 RVEYTLKIIDEDGDTFAKRAEMYYRKRPEIVNFVEEAFRSYRALAERYDHLSRELQSANR 394

Query:    96 TIARVCPEQV--PFMDDDDEDPTPRG-PKKPPVQT------ANIPKVPNLPKK-DLKGMI 145
             TIA   PE V  P  DD DE+    G P+KPP          NIP+VP++PKK D +   
Sbjct:   395 TIATAFPEHVQFPLEDDSDENEDYDGRPRKPPKHLHLIPKGINIPEVPDIPKKKDFRSQS 454

Query:   146 TLANXXXXXX-----XXXXXXXXXXXXXXXXXXXEGLKEIDKLQKQILTLQTDKEFVKSS 200
              + +                              EGL+EIDKLQK IL LQT+KEFV+SS
Sbjct:   455 MMLSRKGPADLKRNVSSAQAKREAAIVRSGLSKEEGLEEIDKLQKGILALQTEKEFVRSS 514

Query:   201 YENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMX 260
             YE    +YWD+E ++ E+Q+ V +LQDEFG G  I+D +ARTLMA+ AL SCR+TL ++ 
Sbjct:   515 YEESYERYWDLENEVTEMQKSVCNLQDEFGLGASIDDSDARTLMASTALSSCRDTLAKLE 574

Query:   261 XXXXXXXXXXXXXRKRIKDARDKFESLKHEFIGNEGS--KKIPHVKDDSVKAVEES---- 314
                          + RI  A+++F +L+++F   E     ++    ++    V+ES    
Sbjct:   575 EKQKISIEEAEIEKGRITTAKERFYALRNKFEKPESDVLDEVIRTDEEEEDVVQESSYES 634

Query:   315 DRSD----IDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLE 370
             +R D    + VV+ A+  +DL  +   +  +    S  +L  T  +E  DE+   +  LE
Sbjct:   635 EREDSNENLTVVKLAEKIDDL--VHRVVSLETNASSHTALVKTLRSET-DELHEHIRGLE 691

Query:   371 TSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL-N 429
                  + ALV    ++   ++ +I  LED+   L N +K L  K+ +  + L     + N
Sbjct:   692 ---EDKAALV----SDATVMKQRITVLEDE---LRNVRK-LFQKVEDQNKNLQNQFKVAN 740

Query:   430 RSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEEL--EISSENVEKYPLRVELHKEIE 487
             R+V+D +   Q    +       +  +L +    E+   ++ S + EK    V   KE E
Sbjct:   741 RTVDDLSGKIQDVKMDEDVEGAGIFQELPVVSGSEDSRDDLKSVSTEKTKKDVIAVKESE 800

Query:   488 GEDAALDPNDDLKE 501
               + A +   ++K+
Sbjct:   801 DGERAQEEKPEIKD 814

GO:0003674 "molecular_function" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2132348 NET1C "AT4G02710" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 7.1e-22, Sum P(3) = 7.1e-22
 Identities = 45/115 (39%), Positives = 61/115 (53%)

Query:    17 HIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVXXXXXXX 76
             H   K SKWL+ NL D++  V   +K++EED DSFA+RAEMYY+KRPEL+  V       
Sbjct:    20 HNTPKNSKWLQDNLADMDSNVKQMIKVLEEDADSFARRAEMYYRKRPELMKLVEEFYRAY 79

Query:    77 XXXXXXXDHISTELQNANTTIARVCPEQVPFMDDDDE-------DPTPRGPKKPP 124
                    +H +  +  A+ TIA   P QVP +  D+        D  P+ P  PP
Sbjct:    80 RALAERYNHATGVIHKAHETIAEAFPNQVPLIFGDESHGGALTNDVDPQTPDMPP 134

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2130210 NET1B "Networked 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 121/519 (23%), Positives = 224/519 (43%)

Query:    17 HIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVXXXXXXX 76
             HI  K SKW++ NL D++ KV   +KLIE D DSFA+RA+MY+KKRPEL+  V       
Sbjct:    20 HI-PKNSKWIQDNLADMDSKVKTMIKLIEADADSFARRADMYFKKRPELMKLVEELYRAY 78

Query:    77 XXXXXXXDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNL 136
                    DH + EL+ A+  +    P Q+ F   +D   +   P+     T  + K    
Sbjct:    79 RALAERYDHTTVELRRAHKVMVEAFPNQMSFDMIEDSASSSSEPRTE-ADTEALQKDGTK 137

Query:   137 PKKDLKGMITLANXXXXXXXXXXXXXXXXXXXXXXXXXEGLK--------EIDKLQKQIL 188
              K+    M  L                           E L         ++ + +K++ 
Sbjct:   138 SKRSFSQMNKLDGTSDSHEADSEVETLKRTLLELQTEKEALNLQYQLILSKVSRFEKELN 197

Query:   189 TLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAA 248
               Q D   VK  ++    K  DIE  IK L++ +  L+ E   G+         L  + A
Sbjct:   198 DAQKD---VKG-FDERACKA-DIE--IKILKESLAKLEVERDTGL---------LQYSQA 241

Query:   249 LKSCRETLTQMXXXXXXXXXXXXXXRKRIKDARDKFESLKHEFIGNEGSKK---IPHVKD 305
             +    E +  +                R+ +A  +  SLK E    +  K+   + + K 
Sbjct:   242 I----ERIADLEASISHGQEYAKGLTNRVSEAEREAMSLKKELSRLQSEKEAGLLRYNKS 297

Query:   306 -DSVKAVEESDRSDIDVVRTAQDR-EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVV 363
              + + ++E++ R   + VR  +D+ E  E+  + +K++L   +  +  +    ++  E +
Sbjct:   298 LELISSLEKTIRDAEESVRVFRDQSEQAETEIKALKQELLKLNEVNEDLNVRYQQCLETI 357

Query:   364 SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL--IN-----DKKDLSSKLV 416
             SK+   E S +   A  +RL +E     A+I+T+E+  A L   N     + ++L+ K+ 
Sbjct:   358 SKLER-EVSHAQDNA--KRLSSEVLAGAAKIKTVEEQCALLESFNQTMKVEAENLAHKMS 414

Query:   417 ----EMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSEN 472
                 E+ +K   +  L   ++++   F + L  +  N++ L H    Q  +E+  ++SE 
Sbjct:   415 AKDQELSQKQNEIEKLQAVMQEEQLRF-SELGASLRNLESL-HS---QSQEEQKVLTSEL 469

Query:   473 VEKYPLRVEL---HKEIEGEDAALDPNDDLKELQSAQLS 508
               +  +  EL   + ++EG+ ++ + N +L E+    +S
Sbjct:   470 HSRIQMLRELEMRNSKLEGDISSKEENRNLSEINDTSIS 508

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2064387 NET4B "AT2G30500" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 37/80 (46%), Positives = 50/80 (62%)

Query:    17 HIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVXXXXXXX 76
             H   K SKWL +NL+ ++++V + LKLIEED DSFAK+A+MY++KRPELI  V       
Sbjct:    28 HNCPKNSKWLAENLEKMDDRVNHMLKLIEEDADSFAKKAQMYFQKRPELIQLVEEFYRMY 87

Query:    77 XXXXXXXDHISTELQNANTT 96
                    D  S ELQ  +T+
Sbjct:    88 RALAERYDQASGELQKNHTS 107

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2007569 NET1D "AT1G03080" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
 Identities = 103/461 (22%), Positives = 183/461 (39%)

Query:    17 HIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVXXXXXXX 76
             HI  K SKWL++NL D++ KV   +K+IEED DSFA+RAEMYYKKRPEL+  V       
Sbjct:    19 HISPKNSKWLQENLTDMDSKVKQMIKVIEEDADSFARRAEMYYKKRPELMKLVEEFYRAY 78

Query:    77 XXXXXXXDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTAN-IPKV-- 133
                    DH +  +++A  T+A   P Q P M  + E P          QT +  P +  
Sbjct:    79 RALAERYDHATGVIRHAQQTMAEAFPNQDPMMFGE-ESPLGSSTDGFDPQTPDSYPPIRA 137

Query:   134 PNLPKKDLKGMITLANXXXXXXXXXXXXXXXXXXXXXXXXXEGLKEIDKLQKQILTLQTD 193
             P  P    KG   +++                         +G K   K +K +     D
Sbjct:   138 PVYPDDLRKGAFGISSSHLSTVKRNIAFMEDPQSVSSG---KGFKTA-KARKGLNFNNVD 193

Query:   194 KEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLM-AAAALKSC 252
              + + +   +   +    E +I  L+  +  +Q E    +   D+    L    + +   
Sbjct:   194 GKEINAKVLSESERASKAEAEIVALKDALSKVQAEKEASLAQFDQNLEKLSNLESEVSRA 253

Query:   253 RETLTQMXXXXXXXXXXXXXXRKRIKDARDKFES--LKHE-FIGN--EGSKKIPHVKDDS 307
             +E    +              R+ +     + ES  L+++  + N  +   +I   + ++
Sbjct:   254 QEDSRVLIERATRAEAEVETLRESLSKVEVEKESSLLQYQQCLQNIADLEDRISLAQKEA 313

Query:   308 VKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDE----VV 363
              +  E ++R++ + +   Q     E+ +E    Q +        + E   K +E      
Sbjct:   314 GEVDERANRAEAETLALKQSLVSSETDKEAALVQYQQCLKTISNLEERLHKAEEDSRLTN 373

Query:   364 SKVVNLETSFSSQTALVQRLRTETD--ELQAQ--IRTLEDDKASLINDKKDLSSKLVEME 419
              +  N E    S    V +L  E +  ELQ Q  + T+ D K  L + +++      E+E
Sbjct:   374 QRAENAEGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRLSREIE 433

Query:   420 EKLLRLHDLNRS---VEDQNYSFQTHLTEARYNIDHLSHKL 457
             + + +L         +E  N +  + L      + + SH+L
Sbjct:   434 DGVAKLKFAEEKCVVLERSNQNLHSELDGLLEKLGNQSHEL 474

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 244 (91.0 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 154/891 (17%), Positives = 383/891 (42%)

Query:   180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEE 239
             I  L+K + T+ + K+  +          + +  +++ +++   +LQ E  +  V   +E
Sbjct:   841 IKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNHQKE 900

Query:   240 ARTL---MAA--AALKSCRETLTQMXXXXXXXXXXXXXXRKRIKDARDKFESLKHEFIGN 294
              ++L   +AA    +K+  E L +M               K + + + +F+S  H+ +  
Sbjct:   901 TKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQS--HDNLVA 958

Query:   295 EGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLE--SLREKIKEQLEFGSSGSLTV 352
             + ++K+  + ++  K ++  + S I  V  +++   ++  +L+ KI    +   +  +  
Sbjct:   959 KLTEKLKSLANN-YKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQEKENFQIER 1017

Query:   353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLED--DKASLINDKK- 409
               + + I+++   + +LE    ++  ++ +  +  DE ++QI  L++  + A+  ND+  
Sbjct:  1018 GSIEKNIEQLKKTISDLE---QTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENV 1074

Query:   410 ----DLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSH-KLKIQK--T 462
                 +L+    E+E +L    +L   +E +  + +  L E + N +HL   K++++K  T
Sbjct:  1075 NKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEAT 1134

Query:   463 DEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQ-SAQLSXXXXXXXXXXXXN 521
             + + +++S       L  E H+++  +    +     KE Q + ++S            N
Sbjct:  1135 ETKQQLNSLRANLESLEKE-HEDLAAQLKKYEEQIANKERQYNEEISQLNDEITSTQQEN 1193

Query:   522 KSPAKVQFEKGIEGS-EGLANIASENLHAEKPDEEFKSSDSIQNXXXXXXXXXXXXXXXX 580
             +S  K   E  +EG  + + + + E  + +K + +   + ++Q                 
Sbjct:  1194 ESIKKKNDE--LEGEVKAMKSTSEEQSNLKKSEID---ALNLQIKELKKKNETNEASLLE 1248

Query:   581 XXXXLNHGDVPKKTRDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQL 640
                 +    V  K +++Q E   + +E+E+++    + ++  +++ +     ++   +++
Sbjct:  1249 SIKSVESETV--KIKELQDEC--NFKEKEVSEL---EDKLKASEDKNSKYLELQKESEKI 1301

Query:   641 KEEMQTEVANDTKEYE-LTDTPGSRQ----EVAGRYQANDEPRKLAAEQECEPDWKEMFL 695
             KEE+  +      + E +T+   +++    E++   + + E RK  AE++ E    E+ +
Sbjct:  1302 KEELDAKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERK-NAEEQLEKLKNEIQI 1360

Query:   696 KGME-NREKTILAE-YTTVLRNYKEAKKKLDESGVKTRDSNDVAKMQLE----ELRSANT 749
             K     +E+ +L E  +T+ + Y E    L++  ++ ++ N++   +++    EL   + 
Sbjct:  1361 KNQAFEKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRSELEKVSL 1420

Query:   750 EKDEEIQSLRQKLSILQAAFGEYNN-LDYQSEATSTRPTDREVEVVVIHGEQPQPTSETE 808
               DE ++  +  +  LQ     Y + +    E   +   D + ++  +  EQ +   E++
Sbjct:  1421 SNDELLEEKQNTIKSLQDEILSYKDKITRNDEKLLSIERDNKRDLESLK-EQLRAAQESK 1479

Query:   809 EKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLVSKLEEKQRKQEGSS 868
              K    + +L EE+         S   ++K ++ ++   N+ ++L S +E  ++  E   
Sbjct:  1480 AKVEEGLKKLEEESSKEKAELEKSKEMMKKLESTIES--NE-TELKSSMETIRKSDEKLE 1536

Query:   869 TARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLKEELTSRCSSLSNIQEEITKALKTSA 928
              ++ + + D + L     ++ + +    +    LK +L     S S + E + + L  + 
Sbjct:  1537 QSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSGSEL-ETVKQELNNAQ 1595

Query:   929 EDDDFKFTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGL 988
             E    +  + +       VL  K E+  +  EL+     +K+ Q E E   S L E    
Sbjct:  1596 EK--IRINAEE-----NTVLKSKLED--IERELKDKQAEIKSNQEEKELLTSRLKELEQE 1646

Query:   989 SDAKSQKLEHSNSRSSVPLRSFIFGVKQKKQRSSFFFSMHPALTRKYNGFR 1039
              D+  QK + S       +R F     Q  +++    + +  L  K   ++
Sbjct:  1647 LDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWK 1697

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA;IDA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IDA

GO:0048211 "Golgi vesicle docking" evidence=IDA

GO:0035493 "SNARE complex assembly" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

TAIR|locus:2161268 NET4A "Networked 4A" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
 Identities = 36/78 (46%), Positives = 48/78 (61%)

Query:    17 HIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVXXXXXXX 76
             HI  K SKWLE NL +++  V   +KLIEED DSFAK+AEMYY+ RPELI+ V       
Sbjct:    28 HIGLKNSKWLENNLDEMDRSVKRMVKLIEEDADSFAKKAEMYYQSRPELIALVDEFHRMY 87

Query:    77 XXXXXXXDHISTELQNAN 94
                    ++I+ EL+  +
Sbjct:    88 RALAERYENITGELRKGS 105

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1043
pfam07765	74	pfam07765, KIP1, KIP1-like protein	3e-39
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
PRK04778	569	PRK04778, PRK04778, septation ring formation regul	7e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003

>gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein

 Score =  139 bits (352), Expect = 3e-39
 Identities = 58/74 (78%), Positives = 63/74 (85%)

Query: 11 SWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVE 70
          SWWW SHI  K SKWLE+NLQ+++ KV   LKLIEED DSFAKRAEMYYKKRPELI+ VE
Sbjct: 1  SWWWDSHISPKNSKWLEENLQEMDSKVKEMLKLIEEDADSFAKRAEMYYKKRPELIALVE 60

Query: 71 EAYRAYRALAERYD 84
          E YRAYRALAERYD
Sbjct: 61 EFYRAYRALAERYD 74

This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerise in vivo. Length = 74

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.2 bits (149), Expect = 3e-09
 Identities = 72/352 (20%), Positives = 151/352 (42%), Gaps = 43/352 (12%)

Query: 178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIED 237
           +EI++L+++I  L+               K  ++E+ + EL++ +  L++E  Q     +
Sbjct: 677 REIEELEEKIEELE--------------EKIAELEKALAELRKELEELEEELEQLRKELE 722

Query: 238 EEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGS 297
           E +R + A       R+ L ++E E E+  E      K + +   + E L+      E  
Sbjct: 723 ELSRQISAL------RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776

Query: 298 KKIPHVKDDSVKAVEESDRSDIDVVRTAQD---------REDLESLREKIKEQLEFGSSG 348
                 + + ++A  E  + ++  +R A D          E+  +LRE+++      ++ 
Sbjct: 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836

Query: 349 SLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK 408
              + ++ E+I+E+   + +L         L++ L +E + L  +  +LE+  A L ++ 
Sbjct: 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896

Query: 409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEI 468
           ++LS +L E+E K   L      + ++    +  L      ID+L      ++  EE  +
Sbjct: 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-----QERLSEEYSL 951

Query: 469 SSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEE 520
           + E  E       L  +IE ++        LK L+  ++ E   V + A EE
Sbjct: 952 TLEEAE------ALENKIEDDEEEAR--RRLKRLE-NKIKELGPVNLAAIEE 994

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 4e-07
 Identities = 63/319 (19%), Positives = 145/319 (45%), Gaps = 13/319 (4%)

Query: 214 QIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIE 273
           ++KEL++ +  L+ +  +   +E+E         +L+   E L +  EE E+  EE K E
Sbjct: 668 ELKELEEELAELEAQLEK---LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 274 RKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLES 333
              +++  ++ +S   E       +++  ++++  +  E  +  + ++    +    L+ 
Sbjct: 725 LAALEEELEQLQSRLEEL-----EEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ 393
             E+++E+ +   +    + E+ E+++E   ++  LE    S     +RL  E +EL+ +
Sbjct: 780 EIEELEEKRQ---ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 394 IRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL 453
           I  LE+    L  + ++L  +L E++E+L  L      +ED+    +    E    +  L
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 454 SHKL-KIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIE 512
             +L ++++  E+L    E +E    R+E+      E+   +  +D  E +  +  E +E
Sbjct: 897 ESELAELKEEIEKLRERLEELEAKLERLEVELPEL-EEELEEEYEDTLETELEREIERLE 955

Query: 513 VKILAEEENKSPAKVQFEK 531
            +I A       A  ++E+
Sbjct: 956 EEIEALGPVNLRAIEEYEE 974

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 6e-07
 Identities = 69/352 (19%), Positives = 140/352 (39%), Gaps = 33/352 (9%)

Query: 207 KYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKS 266
           +Y +++ +++EL+  +  L+ E      + +E           +   E LT      E  
Sbjct: 214 RYKELKAELRELELALLVLRLEE-----LREELEELQEELKEAEEELEELTA-----ELQ 263

Query: 267 AEEAKIERKRIKD--ARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRT 324
             E K+E  R++     ++ E L+ E      + +I  ++       E     +  +   
Sbjct: 264 ELEEKLEELRLEVSELEEEIEELQKEL--YALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 325 AQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLR 384
               E+LES  +++ E+L           E+ EK++E+  ++ +LE       A ++ L 
Sbjct: 322 EAQLEELESKLDELAEEL----------AELEEKLEELKEELESLEAELEELEAELEELE 371

Query: 385 TETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT 444
           +  +EL+ Q+ TL    A L      L++++  +E    RL  L    E      +  L 
Sbjct: 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA---RLERLEDRRERLQQEIEELLK 428

Query: 445 EARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQS 504
           +     +    + ++++ +EELE   E  E+     E  +E+  E    +   D  E + 
Sbjct: 429 KLEEA-ELKELQAELEELEEELE---ELQEELERLEEALEELREELEEAEQALDAAEREL 484

Query: 505 AQLSEEIEV--KILAEEENKSPAKVQFEKGIEGSEGLANIASENLHAEKPDE 554
           AQL   ++   ++    E  S       K   G  G+  + SE +  ++  E
Sbjct: 485 AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE 536

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 49/265 (18%), Positives = 119/265 (44%), Gaps = 7/265 (2%)

Query: 171 LSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFG 230
           L  A  L ++ +L+K++  L+ +   ++   E    +  + E++I+EL+  +  L++E  
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREE-- 282

Query: 231 QGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE 290
               +E+ +   L     ++     ++ + E  E+   E +   +R+++ ++K E+LK E
Sbjct: 283 ----LEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338

Query: 291 FIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSL 350
               E   +        ++  +E     +  +    + E  E+LRE++ E     +    
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEKLSALLEELE-ELFEALREELAELEAELAEIRN 397

Query: 351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKD 410
            + E+  +I+ +  ++  L          ++ L  E +ELQ ++  L ++   L    ++
Sbjct: 398 ELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEE 457

Query: 411 LSSKLVEMEEKLLRLHDLNRSVEDQ 435
           L  +L E+E +L  L +  + +E +
Sbjct: 458 LRDRLKELERELAELQEELQRLEKE 482

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 1e-05
 Identities = 49/276 (17%), Positives = 118/276 (42%), Gaps = 29/276 (10%)

Query: 207 KYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAA--ALKSCRETLTQMEEEQE 264
           +Y +++ +++EL+  +           + + +E R  +      L    E L +++EE E
Sbjct: 214 RYQELKAELRELELALL----------LAKLKELRKELEELEEELSRLEEELEELQEELE 263

Query: 265 KSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRT 324
           ++ +E +  +  +++ R++ E L+ E    E  ++I  ++ +     E  +  + ++   
Sbjct: 264 EAEKEIEELKSELEELREELEELQEEL--LELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 325 AQDREDLESLREKIKEQLE---------------FGSSGSLTVTEMAEKIDEVVSKVVNL 369
            +  E+L+   E +KE+LE                  +      +++  ++E+      L
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381

Query: 370 ETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN 429
               +   A +  +R E +EL+ +I +LE+    L    +DL  +L E+E +L  L    
Sbjct: 382 REELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTEL 441

Query: 430 RSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEE 465
             + ++    +  L E R  +  L  +L   + + +
Sbjct: 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQ 477

Length = 1163

>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional

 Score = 46.4 bits (111), Expect = 7e-05
 Identities = 27/114 (23%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 180 IDKLQKQILTLQTDKEFVKSSY---ENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE 236
           ++  ++Q   L+ + + VK SY   E+ L     +E+Q++ L+++   + +       I 
Sbjct: 319 LEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITER------IA 372

Query: 237 DEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE 290
           ++E         L+   + L ++E+EQEK +E  +  RK   +AR+K E  +++
Sbjct: 373 EQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426

Length = 569

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 1e-04
 Identities = 47/286 (16%), Positives = 115/286 (40%), Gaps = 15/286 (5%)

Query: 148 ANKKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAK 207
             ++L   +   K +  +L +      E  +++++L+ ++  L+ + E ++        +
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 208 YWDIEEQIKELQQRVYSLQDEFGQGIV-IEDEEARTLMAAAALKSCRETLTQMEEEQEKS 266
              +E+Q + L++R+ +L+ +  +    +E+ E++    A  L    E L +++EE E  
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 267 AEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ 326
             E +     +++   + E L+ +            ++    +   +    + ++ R   
Sbjct: 357 EAELEELEAELEELESRLEELEEQLET---------LRSKVAQLELQIASLNNEIERLEA 407

Query: 327 DREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTE 386
             E LE  RE++++++E      L   E+ E   E+      LE        L + L   
Sbjct: 408 RLERLEDRRERLQQEIE-ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE-- 464

Query: 387 TDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSV 432
             EL+ ++   E    +   +   L ++L  +E     L   +  V
Sbjct: 465 --ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 2e-04
 Identities = 61/334 (18%), Positives = 126/334 (37%), Gaps = 39/334 (11%)

Query: 212 EEQIKELQQRVYSLQDEFGQGIVIEDEEARTLM--AAAALKSCRETLTQMEEEQEKSAEE 269
             +++ L++R+  L+ E    +  E       +   +  L      + ++E+E E+  +E
Sbjct: 673 PAELQRLRERLEGLKREL-SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 270 AKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDRE 329
            +  ++R+++  +   SL+ E    +            +K +E          R  +  E
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVK----------SELKELEA---------RIEELEE 772

Query: 330 DLESLREKIKE-QLEFGSSGSLTVTEMAEKIDEVVSKVV----NLETSFSSQTALVQRLR 384
           DL  L E + + +     S    +     K++E VS++      +E   +  T   + L 
Sbjct: 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832

Query: 385 TETDELQAQIRTLEDDKAS----LINDKKDLSSKLVEMEEKLLRLHDLNRSVED---QNY 437
            E  ELQ Q   L++   S    + N          E+EE    L DL   + D   +  
Sbjct: 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892

Query: 438 SFQTHLTEARYNIDHLSHKLKIQK-----TDEELEISSENVEKYPLRVELHKEIEGEDAA 492
             +  L E    I+ L  +++ ++        +LE   E + +        +EI  E+ +
Sbjct: 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952

Query: 493 LDPNDDLKELQSAQLSEEIEVKILAEEENKSPAK 526
           L+      +    ++     V +LA +E +   K
Sbjct: 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK 986

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 4e-04
 Identities = 65/370 (17%), Positives = 146/370 (39%), Gaps = 49/370 (13%)

Query: 229  FGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK 288
              +   IE+ E +       +    + L ++ +E E+  EE +  RK +++   +  +L+
Sbjct: 673  LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732

Query: 289  HEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSG 348
             +                  +   E ++ +  + + +++  +LE+  E+++E+LE     
Sbjct: 733  KDLA----------------RLEAEVEQLEERIAQLSKELTELEAEIEELEERLE----- 771

Query: 349  SLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK 408
                 E  E++ E  +++  LE         ++ LR   DEL+A++  L ++ A+L    
Sbjct: 772  -----EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826

Query: 409  KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI---QKTDEE 465
            + L  ++   E +L  L +    + +   S    + E    I+ L  +L+    ++   E
Sbjct: 827  ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886

Query: 466  LEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKELQSAQLSEEIEVKILAEEENKSPA 525
              ++    E   L  EL    E E    +   +L+EL+          K+   E      
Sbjct: 887  EALALLRSELEELSEELR---ELESKRSELRRELEELRE---------KLAQLELRLEGL 934

Query: 526  KVQFEKGIEGSEGLANIASENLHAEKPDEEFKSS------DSIQNEEES--TVEIVSIEE 577
            +V+ +   E      ++  E   A +   E            ++N+ +    V + +IEE
Sbjct: 935  EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEE 994

Query: 578  SKEQEEKLNH 587
             +E +E+ + 
Sbjct: 995  YEELKERYDF 1004

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 74/388 (19%), Positives = 169/388 (43%), Gaps = 25/388 (6%)

Query: 139 KDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVK 198
           ++ K  +     +L   +S +  +     +        L+E+++  +++  L+ + E ++
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELE 304

Query: 199 SSYENWLAKYWDIEEQI---KELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRET 255
              E   A   ++EE +   K L++R+  L+++  +     +E A      A L   R  
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK 364

Query: 256 LTQMEEEQEKSAEEAKIERK-RIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEES 314
             +   E+ +   E  +ER  ++++A  + +    E       ++I    ++  K +EE 
Sbjct: 365 ELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAAL--EEIQEELEELEKELEEL 422

Query: 315 DRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFS 374
                      ++ E+LE   +K++EQ+    S  L + E+A   ++    V   E    
Sbjct: 423 ----------ERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK--CPVCGQELPEE 470

Query: 375 SQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED 434
            +  L++    E +EL+ ++   E ++A L  + ++L  +L E+EE+L+ L +L  ++++
Sbjct: 471 HEKELLELYELELEELEEELS-REKEEAELREEIEELEKELRELEEELIELLELEEALKE 529

Query: 435 QNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALD 494
           +       L      ++ L  KL++Q+  EEL    +         EL + +E       
Sbjct: 530 ELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLED------RLQELKELLEELRLLRT 583

Query: 495 PNDDLKELQSAQLSEEIEVKILAEEENK 522
             ++L+EL+      + ++K L E  ++
Sbjct: 584 RKEELEELRERLKELKKKLKELEERLSQ 611

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 65/350 (18%), Positives = 141/350 (40%), Gaps = 38/350 (10%)

Query: 144 MITLANKKLRPSK-----SSKKASAAKLVKSGLSKAEGLKE-IDKLQKQILTLQTDKEFV 197
           M+TL  +    S      S          +S  ++ + L+E ++ L++++ +LQ++   +
Sbjct: 641 MVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI 700

Query: 198 KSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT 257
           ++  +    +  D   +I E+++ +  L+ E       E  + R       L S  + + 
Sbjct: 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQE------EEKLKERLEELEEDLSSLEQEIE 754

Query: 258 QMEEEQEKSAEEAKIERKR-----IKDARDKFE-SLKHEFIGNEGSKKIPHVKDDSVKAV 311
               + E    EA+IE        +++A +  E  L H  I  E   ++  ++++  +  
Sbjct: 755 --NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI-PEIQAELSKLEEEVSRIE 811

Query: 312 EESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLET 371
                 +  + R   ++E LE   ++++EQ            ++ E+I  +  ++ NL  
Sbjct: 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRI----------DLKEQIKSIEKEIENLNG 861

Query: 372 SFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRS 431
                    + L  E +EL+A +R LE     L  ++ +L ++L E+E K+  L      
Sbjct: 862 K-------KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914

Query: 432 VEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVE 481
              +    +  L      +  +       +   E E+S E+V+    RVE
Sbjct: 915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE 964

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.003
 Identities = 52/295 (17%), Positives = 121/295 (41%), Gaps = 24/295 (8%)

Query: 149 NKKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKY 208
            K  R     K+    +  +    K    ++ + +++Q+ +L+ + E +         + 
Sbjct: 208 EKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL 267

Query: 209 WDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAE 268
            +IE+ ++EL +++  L          E+E+ R       L++   +L +   E+E+  E
Sbjct: 268 EEIEQLLEELNKKIKDLG---------EEEQLRVKEKIGELEAEIASLERSIAEKERELE 318

Query: 269 EAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDR 328
           +A+    +++   DK  +   E       ++    + D +                A+ +
Sbjct: 319 DAEERLAKLEAEIDKLLAEIEELEREIEEER---KRRDKLTE------------EYAELK 363

Query: 329 EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETD 388
           E+LE LR +++E  +  +     + +  EK++++  ++  L+         +QRL  E  
Sbjct: 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423

Query: 389 ELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL 443
           +L A I  +E     L  +K+D + ++ + E KL +L       E + Y  +   
Sbjct: 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1043
PF07765	74	KIP1: KIP1-like protein; InterPro: IPR011684 This	100.0
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.05
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.02
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.97
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.96
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.94
PRK02224	880	chromosome segregation protein; Provisional	98.79
PRK02224	880	chromosome segregation protein; Provisional	98.71
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.67
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.64
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.6
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.58
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.54
PHA02562	562	46 endonuclease subunit; Provisional	98.5
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.46
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.41
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.4
PRK03918	880	chromosome segregation protein; Provisional	98.36
PRK03918	880	chromosome segregation protein; Provisional	98.34
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.34
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.33
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.29
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.23
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.21
PRK04778	569	septation ring formation regulator EzrA; Provision	98.2
PHA02562	562	46 endonuclease subunit; Provisional	98.18
PRK01156	895	chromosome segregation protein; Provisional	98.07
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.02
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.0
PRK04778	569	septation ring formation regulator EzrA; Provision	98.0
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.0
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.98
PRK11637	428	AmiB activator; Provisional	97.93
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.93
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.92
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.89
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.87
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.85
PRK11637	428	AmiB activator; Provisional	97.84
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.82
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.8
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.8
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.79
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.77
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.76
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.75
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.75
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.74
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.74
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.66
PRK04863	1486	mukB cell division protein MukB; Provisional	97.62
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.6
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.56
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.54
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.53
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.51
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.5
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.5
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.45
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.37
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.33
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.32
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.31
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.29
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.28
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.26
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.22
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.2
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.19
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.17
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.17
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.12
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.09
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	97.0
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.98
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.95
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.93
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.9
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.88
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.88
PRK04863	1486	mukB cell division protein MukB; Provisional	96.86
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.86
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.85
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.82
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.81
PRK11281	1113	hypothetical protein; Provisional	96.81
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.8
PF13514	1111	AAA_27: AAA domain	96.8
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.76
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.74
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	96.7
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	96.7
PRK09039	343	hypothetical protein; Validated	96.65
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.63
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.61
COG4477	570	EzrA Negative regulator of septation ring formatio	96.6
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.48
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.47
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.45
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.42
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.39
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.39
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.35
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.33
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.32
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.29
PF13514	1111	AAA_27: AAA domain	96.25
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.24
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.23
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.2
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.18
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.11
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.04
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.04
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.02
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.98
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.93
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.92
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.89
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.84
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	95.82
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.79
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.78
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.73
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.73
KOG3958	371	consensus Putative dynamitin [Cytoskeleton]	95.71
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.69
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.62
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.57
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.56
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.5
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.5
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	95.5
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.43
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.39
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.35
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.29
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.26
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.17
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.15
PRK09039	343	hypothetical protein; Validated	95.12
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	95.04
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.93
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	94.86
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.83
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.77
COG4372	499	Uncharacterized protein conserved in bacteria with	94.75
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	94.67
PRK10246	1047	exonuclease subunit SbcC; Provisional	94.62
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.57
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.5
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.35
COG4372	499	Uncharacterized protein conserved in bacteria with	94.27
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	94.2
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.2
COG4477	570	EzrA Negative regulator of septation ring formatio	94.15
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.97
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	93.85
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	93.81
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.78
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.64
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	93.64
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	93.62
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.58
PF13166	712	AAA_13: AAA domain	93.4
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	93.28
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.23
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.2
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	93.19
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	93.17
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	93.13
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.09
PRK10698	222	phage shock protein PspA; Provisional	93.08
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	92.79
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	92.75
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.74
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.59
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	92.54
PRK11281	1113	hypothetical protein; Provisional	92.51
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.47
COG4026	290	Uncharacterized protein containing TOPRIM domain,	92.42
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.39
KOG1937	521	consensus Uncharacterized conserved protein [Funct	92.35
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	92.34
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.31
KOG0249	916	consensus LAR-interacting protein and related prot	92.3
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.29
PRK10246	1047	exonuclease subunit SbcC; Provisional	92.28
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.27
PRK10698	222	phage shock protein PspA; Provisional	92.25
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	92.06
COG4717	984	Uncharacterized conserved protein [Function unknow	91.93
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.74
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.65
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.57
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	91.22
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.2
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.2
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.16
COG2433	652	Uncharacterized conserved protein [Function unknow	91.08
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	90.82
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	90.76
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	90.72
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.34
PRK10869	553	recombination and repair protein; Provisional	90.27
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	90.21
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	90.16
KOG1937	521	consensus Uncharacterized conserved protein [Funct	90.14
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	90.09
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	89.88
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.29
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	89.28
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	89.27
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	88.92
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.82
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	88.76
PLN02939	977	transferase, transferring glycosyl groups	88.64
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.61
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	88.5
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	88.16
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	88.06
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.72
PRK15422	79	septal ring assembly protein ZapB; Provisional	87.48
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	87.42
PF13166	712	AAA_13: AAA domain	87.39
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.27
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	87.08
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.88
PRK15422	79	septal ring assembly protein ZapB; Provisional	86.63
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.51
PF14992	280	TMCO5: TMCO5 family	86.46
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	86.39
PRK10869	553	recombination and repair protein; Provisional	86.32
COG2433	652	Uncharacterized conserved protein [Function unknow	86.32
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	86.29
PRK04406	75	hypothetical protein; Provisional	86.26
PF14073	178	Cep57_CLD: Centrosome localisation domain of Cep57	85.79
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.69
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.4
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	85.4
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.4
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	85.33
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.3
PRK02119	73	hypothetical protein; Provisional	85.27
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	85.18
PRK10884	206	SH3 domain-containing protein; Provisional	84.97
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	84.65
PF01496	759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	84.63
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	84.58
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	84.49
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.37
PRK10884	206	SH3 domain-containing protein; Provisional	84.37
KOG2991	330	consensus Splicing regulator [RNA processing and m	84.17
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	84.03
PRK04406	75	hypothetical protein; Provisional	83.97
PF15294	278	Leu_zip: Leucine zipper	83.93
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	83.89
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.7
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	83.53
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	83.41
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	83.21
PRK02793	72	phi X174 lysis protein; Provisional	82.81
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	82.69
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	82.43
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	82.21
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	82.16
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	81.99
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	81.51
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	81.43
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.34
PF11570	136	E2R135: Coiled-coil receptor-binding R-domain of c	81.21
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	80.63
PRK00295	68	hypothetical protein; Provisional	80.56
PRK02119	73	hypothetical protein; Provisional	80.34
PRK03947	140	prefoldin subunit alpha; Reviewed	80.24
PRK02793	72	phi X174 lysis protein; Provisional	80.22
PRK04325	74	hypothetical protein; Provisional	80.05

>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants

Probab=100.00  E-value=4.4e-39  Score=283.97  Aligned_cols=74  Identities=80%  Similarity=1.330  Sum_probs=73.5

Q ss_pred             ccccccCCCCCCchHHHHhHHHHHHHHHHHHHHhhhcCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhh
Q 001620           11 SWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERYD   84 (1043)
Q Consensus        11 ~ww~~shi~~~~s~wL~~~l~dmd~kvk~~l~li~ed~dsfakraemyy~kRpeLi~~vee~~r~Yr~Laeryd   84 (1043)
                      ||||+|||+|++||||++||+|||.|||.||+||++||||||+||||||++||+||++||||||+||+||||||
T Consensus         1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD   74 (74)
T PF07765_consen    1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD   74 (74)
T ss_pred             ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998

They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.05  E-value=9.7e-08  Score=120.17  Aligned_cols=263  Identities=17%  Similarity=0.246  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .++..|+..+..++.+...+...+..+...+..++.++..++.++..++..      +.....+...+...+..++..+.
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~e~~  750 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ------ISALRKDLARLEAEVEQLEERIA  750 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666666666666666666666666555555444      44444444444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK  337 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k  337 (1043)
                      .++.....+..++..+..++..++.++..+...+..+.......         -..+..+...+..+   ..++..+..+
T Consensus       751 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~---~~~~~~~~~~  818 (1179)
T TIGR02168       751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL---------KEELKALREALDEL---RAELTLLNEE  818 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            55555555555555555555555555555544443322111110         01111122222222   2222222222


Q ss_pred             HHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 001620          338 IKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE  417 (1043)
Q Consensus       338 InEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkE  417 (1043)
                      +..+..........+.++..+++.+..++..++..+......+..+...++++...+..++..+..+......+..++.+
T Consensus       819 l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  898 (1179)
T TIGR02168       819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE  898 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222211112223344555555555555555555555555555555555556666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          418 MEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       418 lEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      ++.++..++.....+..++..++..+..+...++++...+.
T Consensus       899 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~  939 (1179)
T TIGR02168       899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID  939 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666655543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.02  E-value=1.5e-07  Score=119.01  Aligned_cols=111  Identities=17%  Similarity=0.284  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .++..|..++..|+.+.+.+...+..+...+..++..+..+...+..++.+      +.....+...+...+..+...+.
T Consensus       674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~------l~~~~~~l~~~~~~~~~l~~~~~  747 (1164)
T TIGR02169       674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE------IEQLEQEEEKLKERLEELEEDLS  747 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777777777777777777777777776666666666555      44444444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN  294 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L  294 (1043)
                      .++..+.....++..+..++..+..++..+..++..+
T Consensus       748 ~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l  784 (1164)
T TIGR02169       748 SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL  784 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.97  E-value=2.9e-07  Score=116.43  Aligned_cols=110  Identities=13%  Similarity=0.230  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 001620          176 GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRET  255 (1043)
Q Consensus       176 Ae~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEt  255 (1043)
                      ...++..|+..+..++.+...+...+..+...+..++..+..+..++..++.+      ++....+...+...+..++..
T Consensus       679 l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~------l~~~~~~~~~l~~~~~~~~~~  752 (1164)
T TIGR02169       679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE------EEKLKERLEELEEDLSSLEQE  752 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            33777777777777777777777777777777777777777777666666655      555555555556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          256 LTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       256 L~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      +..++.++..+..++..+..++..++.++..+...+
T Consensus       753 ~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~  788 (1164)
T TIGR02169       753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARL  788 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666665544

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.96  E-value=2.8e-07  Score=118.45  Aligned_cols=273  Identities=19%  Similarity=0.311  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001620          179 EIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQ  258 (1043)
Q Consensus       179 EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~e  258 (1043)
                      ++..|..++..++...+.+..........+..++..+.++...+..+...      ++........+..+++.....+..
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  741 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ------LEELKRELAALEEELEQLQSRLEE  741 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555554444444444444444444444443      333333333444444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHH
Q 001620          259 MEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKI  338 (1043)
Q Consensus       259 LEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kI  338 (1043)
                      |+.++..+.++...+..++..++..+..+...+..++...+.....-+.  ....+..++..+..+   +.++..+...+
T Consensus       742 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~  816 (1163)
T COG1196         742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA--LQEELEELEEELEEA---ERRLDALEREL  816 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            5555555444444444444444444444444443332222220000000  002333333333333   35677777777


Q ss_pred             HHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620          339 KEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM  418 (1043)
Q Consensus       339 nEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl  418 (1043)
                      +............+..+.+++..+..++..++..+...+..+..+..++++++..+..++..+..++..+.++..+++++
T Consensus       817 ~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~  896 (1163)
T COG1196         817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL  896 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccCc
Q 001620          419 EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKT  462 (1043)
Q Consensus       419 Eeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~~  462 (1043)
                      +.++..+...++......+.+..+...+...+..+...+....+
T Consensus       897 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  940 (1163)
T COG1196         897 ESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE  940 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            99999999999999999999888888888888888777776544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.94  E-value=4.1e-07  Score=114.56  Aligned_cols=108  Identities=16%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .++..|..++..|+.+.+.+...+..+...+..++.++..++.++..++.+      +.....+...+...+...+..+.
T Consensus       670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  743 (1179)
T TIGR02168       670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE------LEELSRQISALRKDLARLEAEVE  743 (1179)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777777777777777777777777777766666555      44344444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      .|+.++..+..+...+..++..++..+..+...+
T Consensus       744 ~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  777 (1179)
T TIGR02168       744 QLEERIAQLSKELTELEAEIEELEERLEEAEEEL  777 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.79  E-value=1.6e-06  Score=108.09  Aligned_cols=72  Identities=21%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL  425 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev  425 (1043)
                      .++.++|..+..++.+++..+.... .+..+..++.++...+..++.++..|...+..+.+++.+++.++.++
T Consensus       568 ~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        568 EEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444 34444444444445555555444444444444555454444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=98.71  E-value=1.4e-05  Score=99.84  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620          180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE  228 (1043)
Q Consensus       180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE  228 (1043)
                      +..|+..+..+.++...+...++.....+..++..+..++.++..+..+
T Consensus       323 ~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~  371 (880)
T PRK02224        323 DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE  371 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333334444555555555555555555544444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.67  E-value=2.4e-05  Score=84.41  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ  435 (1043)
Q Consensus       356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e  435 (1043)
                      .++.+.+..+|..|+..+......+..|..--+....++..+++.+..|...-.........++.....++..+..++..
T Consensus       133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~e  212 (237)
T PF00261_consen  133 EERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDE  212 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555566666666666666666666


Q ss_pred             HhhHHHHHHHHHHhHHHHHHhhcc
Q 001620          436 NYSFQTHLTEARYNIDHLSHKLKI  459 (1043)
Q Consensus       436 ~~~L~srftEa~~~L~eLseeL~s  459 (1043)
                      +...+..+..+...|+..=..|++
T Consensus       213 L~~~k~~~~~~~~eld~~l~el~~  236 (237)
T PF00261_consen  213 LEKEKEKYKKVQEELDQTLNELNE  236 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC
Confidence            666666666666666555444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.64  E-value=1.1e-05  Score=104.00  Aligned_cols=257  Identities=18%  Similarity=0.259  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 001620          177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETL  256 (1043)
Q Consensus       177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL  256 (1043)
                      ..+|..+...+..+..+...+......+...+.+++..+..+..++..+..+      +.....+...+...+..+.+.+
T Consensus       673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~  746 (1163)
T COG1196         673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE------LAALEEELEQLQSRLEELEEEL  746 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777777777777777777776666666666666666555      4444444444555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhh-cccccchhhHhhhhhh----HHHH
Q 001620          257 TQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAV-EESDRSDIDVVRTAQD----REDL  331 (1043)
Q Consensus       257 ~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~i-SeIpeLeee~~~l~eE----E~rL  331 (1043)
                      ..|...+..+..++..+..++..+...+..|+..+..+........   ..+..+ ..+..+...+..+..+    ..+.
T Consensus       747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (1163)
T COG1196         747 EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ---EELEELEEELEEAERRLDALERELESLEQRR  823 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544444444444444444444444444444444433321110000   000000 1112222222222211    2222


Q ss_pred             HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 001620          332 ESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDL  411 (1043)
Q Consensus       332 e~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L  411 (1043)
                      +.+..+|..+..........+..+...+..+..++..+...+....+.+..+...+..++.....++.++..+......+
T Consensus       824 ~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~  903 (1163)
T COG1196         824 ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL  903 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333332222233344444444444444445444554555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001620          412 SSKLVEMEEKLLRLHDLNRSVEDQNYSFQTH  442 (1043)
Q Consensus       412 ~ekLkElEeel~evq~l~esVe~e~~~L~sr  442 (1043)
                      ..++..+...+..+......+..++..+...
T Consensus       904 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  934 (1163)
T COG1196         904 KEEIEKLRERLEELEAKLERLEVELPELEEE  934 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555555554444444444444444433333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.60  E-value=2.2e-05  Score=103.64  Aligned_cols=210  Identities=18%  Similarity=0.263  Sum_probs=134.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHH---------
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLM---------  244 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~---------  244 (1043)
                      .+|+....++......|+.+...+..++....++-..++.+...++.++..+...      |+|.+.-..+         
T Consensus       890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~------~~~~E~~~~k~~~Ek~~~e  963 (1930)
T KOG0161|consen  890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQ------LEELELTLQKLELEKNAAE  963 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence            4556777888888888888888888888888888888888888888888777666      5555554444         


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchh
Q 001620          245 -----AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDI  319 (1043)
Q Consensus       245 -----aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLee  319 (1043)
                           +..++..|.+.+++|-.+.+...+..+.+...+...++++..|.+.+.+++..+++                ++.
T Consensus       964 ~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~----------------le~ 1027 (1930)
T KOG0161|consen  964 NKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDD----------------LEV 1027 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHH
Confidence                 44566667777777777777777777777777777777777777777777555444                221


Q ss_pred             hHhhhhh---h-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001620          320 DVVRTAQ---D-REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIR  395 (1043)
Q Consensus       320 e~~~l~e---E-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklk  395 (1043)
                      ...+-+.   + +...+.+++.+..+.+       .+.++...++++.+.....+..++.....++.+...+..++..++
T Consensus      1028 ~le~e~~~r~e~Ek~~rkle~el~~~~e-------~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1028 TLEREKRIRMELEKAKRKLEGELKDLQE-------SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            2111111   1 4444455555533332       446677777777777777777766666666666555555555555


Q ss_pred             HHHHHHHHhhhchHHHH
Q 001620          396 TLEDDKASLINDKKDLS  412 (1043)
Q Consensus       396 eLEeEl~~Lk~dRe~L~  412 (1043)
                      +|+..+..|.++-+..+
T Consensus      1101 eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1101 ELEARIKELEEELEAER 1117 (1930)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            54444444444433333

>TIGR00606 rad50 rad50

Probab=98.58  E-value=3.4e-05  Score=100.74  Aligned_cols=105  Identities=13%  Similarity=0.198  Sum_probs=71.7

Q ss_pred             cchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001620          316 RSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIR  395 (1043)
Q Consensus       316 eLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklk  395 (1043)
                      .+..++..+...-..|..+...|..+...+  ....+.++...+..+...+..++..+...+..|..++.+++.++...+
T Consensus       938 ~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~--~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606       938 KAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555777777888888777765  444567777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHh--hhchHHHHHHHHHHHHHH
Q 001620          396 TLEDDKASL--INDKKDLSSKLVEMEEKL  422 (1043)
Q Consensus       396 eLEeEl~~L--k~dRe~L~ekLkElEeel  422 (1043)
                      .+.+.+.-+  ...-..+..+|..++...
T Consensus      1016 ~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606      1016 WLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777666  555555555555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.54  E-value=3.8e-05  Score=95.80  Aligned_cols=232  Identities=15%  Similarity=0.242  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHH-----------
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAA-----------  246 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE-----------  246 (1043)
                      ..++.+..-....-+-++.....+....+.+..+++++.++++.+..+.+       .++...+...+.           
T Consensus       207 T~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-------~e~~~~~l~~Lk~k~~W~~V~~~  279 (1074)
T KOG0250|consen  207 TQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-------LEDLKENLEQLKAKMAWAWVNEV  279 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666777888888888888888888888888888876643       333333333222           


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhh
Q 001620          247 -AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA  325 (1043)
Q Consensus       247 -~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~  325 (1043)
                       .+|+-|.+.+...|++...+.+.+.....++..++.++.+++..++.+..+-                   +.+...+.
T Consensus       280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~-------------------~~~d~Ei~  340 (1074)
T KOG0250|consen  280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEV-------------------DAQDEEIE  340 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh-------------------hhhhHHHH
Confidence             5788888888888888888888888888888888888887777776553322                   22222222


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          326 QDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSF-SSQTALVQRLRTETDELQAQIRTLEDDKASL  404 (1043)
Q Consensus       326 eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~I-Ssqea~IerLr~EleELqeklkeLEeEl~~L  404 (1043)
                      .....++.+..+.+++....-.++..|..+...++.|.-.|++++... -+.+.++...+.+++-|+..+..+++.+..|
T Consensus       341 ~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L  420 (1074)
T KOG0250|consen  341 EARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL  420 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223334444444333333333344455555555555555555555555 4444555555555555555555555555555


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          405 INDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ  435 (1043)
Q Consensus       405 k~dRe~L~ekLkElEeel~evq~l~esVe~e  435 (1043)
                      +.+...+.++++..++++..+++....++..
T Consensus       421 ~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~  451 (1074)
T KOG0250|consen  421 REELNEVKEKAKEEEEEKEHIEGEILQLRKK  451 (1074)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            5555555555555555554444443333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.50  E-value=0.00013  Score=86.73  Aligned_cols=228  Identities=14%  Similarity=0.187  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      ..+..++.++..|+.+.+.+..++......+.+++....   ..+..++.+      ++........+..++...++.|.
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e------~~~l~~~~~~l~~~l~~l~~~i~  244 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNK------YDELVEEAKTIKAEIEELTDELL  244 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555554444444444444444322   334455444      55555666666677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLES  333 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe~  333 (1043)
                      +|...+....+.+..+...+..++..+..+...+...+....-| .+.      ..+......+..+...    +.++..
T Consensus       245 ~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp-~C~------~~~~~~~~~~~~l~d~i~~l~~~l~~  317 (562)
T PHA02562        245 NLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP-TCT------QQISEGPDRITKIKDKLKELQHSLEK  317 (562)
T ss_pred             HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCC------CcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            77777666777777788888888888888887777665322221 111      2222223333333332    445555


Q ss_pred             HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 001620          334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSS  413 (1043)
Q Consensus       334 Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~e  413 (1043)
                      ++..|.++.....    .+.++..++.++.+++......|.+....+..++.+++.|+....++++++..|..+-.++..
T Consensus       318 l~~~i~~~~~~~~----~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~  393 (562)
T PHA02562        318 LDTAIDELEEIMD----EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK  393 (562)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence            5555554433221    456666677777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHH
Q 001620          414 KLVEMEEKLLRL  425 (1043)
Q Consensus       414 kLkElEeel~ev  425 (1043)
                      .+.++..+....
T Consensus       394 ~~~~~~ke~~~~  405 (562)
T PHA02562        394 TKSELVKEKYHR  405 (562)
T ss_pred             HHHHHHHHHHHH
Confidence            777776666554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.46  E-value=8.8e-05  Score=80.16  Aligned_cols=85  Identities=15%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 001620          351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNR  430 (1043)
Q Consensus       351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~e  430 (1043)
                      +|.+|.+.+..+-+.+.+|+.....+......+...|..|..++++.+.-..........|...+..++.++...+....
T Consensus       142 ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~  221 (237)
T PF00261_consen  142 KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK  221 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             HHHHH
Q 001620          431 SVEDQ  435 (1043)
Q Consensus       431 sVe~e  435 (1043)
                      .+..+
T Consensus       222 ~~~~e  226 (237)
T PF00261_consen  222 KVQEE  226 (237)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=0.00032  Score=87.99  Aligned_cols=51  Identities=16%  Similarity=0.315  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE  228 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE  228 (1043)
                      ..+..|++++..+....+.+..+...+.+++-.++..+.++..+++.+..+
T Consensus       778 ~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~  828 (1293)
T KOG0996|consen  778 ESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTAS  828 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHH
Confidence            789999999999999999999999999999999999888888877777665

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.40  E-value=0.00011  Score=97.36  Aligned_cols=52  Identities=21%  Similarity=0.254  Sum_probs=43.2

Q ss_pred             ccccchhhhhhhhhhhhhhhHHHHHhhhhHHHHHHHHHHHHHHhhhhhcCCC
Q 001620          938 YQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVEKTLSMLGEKFGLS  989 (1043)
Q Consensus       938 yqAAKFQGEVlNMkQEnnkVa~ELqagld~v~~Lq~evek~l~kL~e~~~ls  989 (1043)
                      -.--|--++|.-++-+---+.+++.++-|+++..+.+..++-..|+.+=+-+
T Consensus      1716 ~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1716 AEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3344667889999999999999999999999999999999998888665543

>PRK03918 chromosome segregation protein; Provisional

Probab=98.36  E-value=0.00022  Score=89.11  Aligned_cols=43  Identities=26%  Similarity=0.409  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          183 LQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSL  225 (1043)
Q Consensus       183 LqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~L  225 (1043)
                      |...+..++.++..+...+..+..++.+++..+..+++.+..|
T Consensus       389 l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L  431 (880)
T PRK03918        389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL  431 (880)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445555555555555555555555444333

>PRK03918 chromosome segregation protein; Provisional

Probab=98.34  E-value=0.00013  Score=91.15  Aligned_cols=48  Identities=25%  Similarity=0.379  Sum_probs=26.6

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE  398 (1043)
Q Consensus       351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE  398 (1043)
                      .+..+..++.++..++..+...+....+.+..++..++++++.+..|.
T Consensus       385 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~  432 (880)
T PRK03918        385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK  432 (880)
T ss_pred             CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555544443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.34  E-value=0.0038  Score=69.32  Aligned_cols=61  Identities=26%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620          363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL  423 (1043)
Q Consensus       363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~  423 (1043)
                      ..++.++...+......+...+.++.+++..+..|..++..|+.....|...+.+++..+.
T Consensus       194 ~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~  254 (312)
T PF00038_consen  194 QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD  254 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence            3455555556666666666666666666666666666666666666666666665554433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.33  E-value=0.0011  Score=82.44  Aligned_cols=283  Identities=16%  Similarity=0.210  Sum_probs=184.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---ccc--chhh--HHHHHHHHH
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFG---QGI--VIED--EEARTLMAA  246 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~---~~a--~IED--~eARal~aE  246 (1043)
                      ..+.+.+.+|+.+...++.|.+-+...++....++..+...+..+++.|..|+....   .++  .-++  ...+...++
T Consensus       110 d~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e  189 (775)
T PF10174_consen  110 DKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAE  189 (775)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHH
Confidence            556677888888888888888888888888888888888888888888888887541   111  0000  111222222


Q ss_pred             HHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccc
Q 001620          247 AALKSCRETLTQMEEEQE--------------------KSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDD  306 (1043)
Q Consensus       247 ~aIksceEtL~eLEeere--------------------~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~  306 (1043)
                      ..+..++..+...+....                    .+..-+..-..+|..++.-+..+..+|..|....+.+...-+
T Consensus       190 ~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~  269 (775)
T PF10174_consen  190 ARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRD  269 (775)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence            333333333333332221                    112222223334444444444444454444443332111111


Q ss_pred             ch-hhhc----ccccchhhHhhhhhh----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhH
Q 001620          307 SV-KAVE----ESDRSDIDVVRTAQD----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQT  377 (1043)
Q Consensus       307 ~l-e~iS----eIpeLeee~~~l~eE----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqe  377 (1043)
                      .+ +.++    ...-+...++.+.-+    ..++..+..++..+..       .-.|+...|+-|..-+...+...+-.+
T Consensus       270 ~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~-------~~~d~r~hi~~lkesl~~ke~~~~~Lq  342 (775)
T PF10174_consen  270 RLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE-------QDSDMRQHIEVLKESLRAKEQEAEMLQ  342 (775)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 1111    000111122222222    3445555555544443       347889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          378 ALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       378 a~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      +.|++|+.++++.+..+.....-+..+..+...+..+|..+.+.++.....+..++..+.+|...+.+=...+..+...|
T Consensus       343 sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl  422 (775)
T PF10174_consen  343 SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERL  422 (775)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             cccCchh
Q 001620          458 KIQKTDE  464 (1043)
Q Consensus       458 ~s~~~~~  464 (1043)
                      .+ .||.
T Consensus       423 ~~-~~d~  428 (775)
T PF10174_consen  423 SS-QADS  428 (775)
T ss_pred             hc-cccc
Confidence            87 5553

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=98.29  E-value=0.00025  Score=92.92  Aligned_cols=122  Identities=8%  Similarity=0.187  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHhh
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL--QAQIRTLEDDKASLI  405 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL--qeklkeLEeEl~~Lk  405 (1043)
                      ...|..+..+|...       ..++.++...++.+..++..+...|..++.....+...|.-+  +..+.+++.++..|.
T Consensus       969 ~~qL~~~e~el~~~-------~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606       969 DDYLKQKETELNTV-------NAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL 1041 (1311)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44466666666654       335666777777777777777777777766666666666666  555555555555555


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          406 NDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       406 ~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      .....+  ....+..++.++......+..+...+......+...|..|..+|.
T Consensus      1042 ~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606      1042 KEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred             HHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444433  224444455555555555555555555555555666666655553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.23  E-value=0.00056  Score=85.84  Aligned_cols=246  Identities=17%  Similarity=0.292  Sum_probs=152.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 001620          192 TDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQ-----EKS  266 (1043)
Q Consensus       192 tEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeer-----e~s  266 (1043)
                      |..+-+...|..+.+.+......|....+.+..++.+      |.+.+.....+ ..++...+.+..|..+.     -..
T Consensus       207 T~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~------i~e~~e~~~~~-~~~e~~~~~l~~Lk~k~~W~~V~~~  279 (1074)
T KOG0250|consen  207 TQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKK------IKEEEEKLDNL-EQLEDLKENLEQLKAKMAWAWVNEV  279 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777788888888888888888888888888776      65444433221 22333334444444443     344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHHHHHHHHHHHH
Q 001620          267 AEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLESLREKIKEQL  342 (1043)
Q Consensus       267 ~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe~Ld~kInEl~  342 (1043)
                      ..++......|...+.++..+...+..........         -.++.+.++++..+..+    ..+++.+...+..+.
T Consensus       280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~---------r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~  350 (1074)
T KOG0250|consen  280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEA---------RQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLR  350 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            45555555555555555555555554332221110         02344455555555444    566666666666655


Q ss_pred             hcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 001620          343 EFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTET-DELQAQIRTLEDDKASLINDKKDLSSKLVEMEEK  421 (1043)
Q Consensus       343 eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~El-eELqeklkeLEeEl~~Lk~dRe~L~ekLkElEee  421 (1043)
                      .+.       .++.++|-.+.|.+..+...+--...+|..++.++ ..+...+.+.++++..|..+.+++.+.+..|+++
T Consensus       351 re~-------~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e  423 (1074)
T KOG0250|consen  351 REV-------NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE  423 (1074)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543       56666777777777777777777777777776666 6667777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          422 LLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       422 l~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      +..+.......+.+..+++.....+.-.|...+..|...
T Consensus       424 ~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l  462 (1074)
T KOG0250|consen  424 LNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL  462 (1074)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777666666666666666665554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.21  E-value=0.0015  Score=72.42  Aligned_cols=234  Identities=15%  Similarity=0.181  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          206 AKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFE  285 (1043)
Q Consensus       206 ekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~ele  285 (1043)
                      ..|.++-.+.+.++-++..+..+      +++...+..........++..|..|..........-..+..+|..+..++.
T Consensus        61 ~~id~~~~eka~l~~e~~~l~~e------~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~  134 (312)
T PF00038_consen   61 RQIDDLSKEKARLELEIDNLKEE------LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE  134 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHhhHHhhhhhhHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence            33444444444444444444444      566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHh----hccccCCCC-CCCccccchhhhcccccchhhHhhhhhh-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHH
Q 001620          286 SLKHE----FIGNEGSKK-IPHVKDDSVKAVEESDRSDIDVVRTAQD-REDLESLREKIKEQLEFGSSGSLTVTEMAEKI  359 (1043)
Q Consensus       286 sLk~e----l~~LEaeke-~~~l~~~~le~iSeIpeLeee~~~l~eE-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkI  359 (1043)
                      -++..    +..+..... .......   . ..-++|..-+..++.+ +..+......+...      ....+.++...+
T Consensus       135 fl~~~heeEi~~L~~~~~~~~~~e~~---~-~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~------y~~k~~~l~~~~  204 (312)
T PF00038_consen  135 FLKQNHEEEIEELREQIQSSVTVEVD---Q-FRSSDLSAALREIRAQYEEIAQKNREELEEW------YQSKLEELRQQS  204 (312)
T ss_dssp             HHHHHHHHHHHTTSTT--------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhhhccccccceeec---c-cccccchhhhhhHHHHHHHHHhhhhhhhhhh------cccccccccccc
Confidence            55543    333333321 0000000   0 1123344444455444 33333333333333      233456666666


Q ss_pred             HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI----NDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ  435 (1043)
Q Consensus       360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk----~dRe~L~ekLkElEeel~evq~l~esVe~e  435 (1043)
                      ......+..+...+......|..|+.+++.++.....|+..+..|.    ..+..+...+..++.++..++..+.....+
T Consensus       205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e  284 (312)
T PF00038_consen  205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE  284 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence            6666666677777777777777777777777777777776666553    455556677777777777777777766666


Q ss_pred             HhhHHHHHHHHHHhHHHHHH
Q 001620          436 NYSFQTHLTEARYNIDHLSH  455 (1043)
Q Consensus       436 ~~~L~srftEa~~~L~eLse  455 (1043)
                      ...|-..-..+..+|..-+.
T Consensus       285 y~~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  285 YQELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHH
Confidence            66655555556666665543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.20  E-value=0.006  Score=73.86  Aligned_cols=204  Identities=14%  Similarity=0.198  Sum_probs=100.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhccc
Q 001620          235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEES  314 (1043)
Q Consensus       235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeI  314 (1043)
                      ++...+....+...|..|-+.|..-...+..+......+...+..++.....|..++..+...       |.-       
T Consensus       277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s-------Y~l-------  342 (569)
T PRK04778        277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS-------YTL-------  342 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccc-------
Confidence            444445555555566666666666666666666666666666666666666666666655221       110       


Q ss_pred             ccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001620          315 DRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQI  394 (1043)
Q Consensus       315 peLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqekl  394 (1043)
                        -+.++...+.-+.++..+...+......-......+.++.+..+.+..++..++.........|..|+..-.+.+.++
T Consensus       343 --~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL  420 (569)
T PRK04778        343 --NESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL  420 (569)
T ss_pred             --CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011222222223344444444443333333333345566666666666666666666666666665555555555555


Q ss_pred             HHHHHHHHHhhh---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001620          395 RTLEDDKASLIN---------DKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS  454 (1043)
Q Consensus       395 keLEeEl~~Lk~---------dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLs  454 (1043)
                      ..+...+..++.         -+......+..+..++..+...++....-+.++...+.++...++.|.
T Consensus       421 ~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~  489 (569)
T PRK04778        421 ERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLE  489 (569)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            555555444432         223333444444444444444443333333333333344444444443

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.18  E-value=0.00069  Score=80.55  Aligned_cols=30  Identities=13%  Similarity=0.215  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001620          197 VKSSYENWLAKYWDIEEQIKELQQRVYSLQ  226 (1043)
Q Consensus       197 l~sqyq~~lekl~eLE~qISeaQeeV~~LQ  226 (1043)
                      ++..|+....++..++.++..++.++..++
T Consensus       172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~  201 (562)
T PHA02562        172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYN  201 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555544443

>PRK01156 chromosome segregation protein; Provisional

Probab=98.07  E-value=0.0027  Score=80.14  Aligned_cols=7  Identities=29%  Similarity=0.207  Sum_probs=3.4

Q ss_pred             hhHHhhh
Q 001620          892 LTLWIEK  898 (1043)
Q Consensus       892 L~vWlE~  898 (1043)
                      +.-||.+
T Consensus       741 ~r~~l~k  747 (895)
T PRK01156        741 LREAFDK  747 (895)
T ss_pred             HHHHhhh
Confidence            4445554

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.02  E-value=0.002  Score=80.18  Aligned_cols=196  Identities=15%  Similarity=0.240  Sum_probs=133.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhccc
Q 001620          235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEES  314 (1043)
Q Consensus       235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeI  314 (1043)
                      +++.+.++......++.|+++++.||..+.....+-   ..|+.+++.+|+.+++.+.....+                 
T Consensus       750 v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~-----------------  809 (1174)
T KOG0933|consen  750 VEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKE-----------------  809 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence            555666666666677777777777776665554332   245566666666666665433222                 


Q ss_pred             ccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001620          315 DRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQI  394 (1043)
Q Consensus       315 peLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqekl  394 (1043)
                               +...+.+.+.|..++.++..+..+..-....+...|+.+...+.+|+..|...+..++.+..++.+.++++
T Consensus       810 ---------~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~  880 (1174)
T KOG0933|consen  810 ---------LEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQ  880 (1174)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence                     22225556666666666666666666667777778888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620          395 RTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI  459 (1043)
Q Consensus       395 keLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s  459 (1043)
                      ...-.++..+...-+.+..+....+-++..+...+.++..+..+......-+...++=|.++.+.
T Consensus       881 ~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~  945 (1174)
T KOG0933|consen  881 RDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRL  945 (1174)
T ss_pred             HhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHh
Confidence            88888887777777777777777777777777777777777777666666666666666544443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.00  E-value=0.004  Score=74.72  Aligned_cols=274  Identities=14%  Similarity=0.220  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc-cchhhHHHHHHHHH----HHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQG-IVIEDEEARTLMAA----AALKSC  252 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~-a~IED~eARal~aE----~aIksc  252 (1043)
                      .||.+|+.+...+-.+|+....+.+...........++.++..+|..+...+... +...+.+.+...+.    ..+..|
T Consensus       137 ~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~  216 (522)
T PF05701_consen  137 QELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEW  216 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988888899999999988887774311 11111111111111    233344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhh----hcccccchhhHhhhhhhH
Q 001620          253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKA----VEESDRSDIDVVRTAQDR  328 (1043)
Q Consensus       253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~----iSeIpeLeee~~~l~eEE  328 (1043)
                      +..+.+-+.++..+..++    ..+..++.++......+..|..++......  .+..    -.....+...+..+   .
T Consensus       217 ~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~--~l~~~~~~~~~~~~~~~~l~s~---~  287 (522)
T PF05701_consen  217 EKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKES--KLEEEAEAKEKSSELQSSLASA---K  287 (522)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHhhhhhhhHHHHHHHH---H
Confidence            444444444444444433    222333334443334443333332221000  0000    00001111111111   3


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620          329 EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK  408 (1043)
Q Consensus       329 ~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR  408 (1043)
                      .+|......|.....+.......|.-|...++....-+..+..+.......|..|+.++...+..+..+...-...+...
T Consensus       288 ~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~  367 (522)
T PF05701_consen  288 KELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAM  367 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhH
Confidence            33444444444333333333445555666666666666666666666666666666666666666666665555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      .+|...|.++..+....+.....++.+...++.....+...|......|..+
T Consensus       368 ~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa  419 (522)
T PF05701_consen  368 SELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA  419 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777777777776666777776677777777777777766666654

Several sequences in this family are described as being myosin heavy chain-like.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.00  E-value=0.0062  Score=73.79  Aligned_cols=133  Identities=13%  Similarity=0.192  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHH----------HHHHHHHHHHHHHHHHHH
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTAL----------VQRLRTETDELQAQIRTL  397 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~----------IerLr~EleELqeklkeL  397 (1043)
                      ..+|..|...|......+.+.......+.+.+..+......|...+......          +..+..++.++.+....+
T Consensus       288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~  367 (569)
T PRK04778        288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI  367 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555          556666666666666666


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          398 EDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       398 EeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      ...+......-+.+...+.++.+++..+......+...+..|+.--.++...|..++..|+..
T Consensus       368 ~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i  430 (569)
T PRK04778        368 TERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI  430 (569)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666677777777777777777777777777777777777777777777776643

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.00  E-value=0.0026  Score=80.34  Aligned_cols=113  Identities=16%  Similarity=0.220  Sum_probs=64.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc---------chhhHH-------HHHHHHHHHHHH
Q 001620          188 LTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI---------VIEDEE-------ARTLMAAAALKS  251 (1043)
Q Consensus       188 ~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a---------~IED~e-------ARal~aE~aIks  251 (1043)
                      .=|..|.+....+-..+.-.+.+...+|...+++...+....-..+         ..+.++       .|+..+.....+
T Consensus       309 ~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~  388 (1293)
T KOG0996|consen  309 EFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFES  388 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555444444555555566666666666655544321000         011111       122222235556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 001620          252 CRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKI  300 (1043)
Q Consensus       252 ceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~  300 (1043)
                      |..+...++.+--...+.++.+...|.+++++++..+.++..++.-.+.
T Consensus       389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~  437 (1293)
T KOG0996|consen  389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEK  437 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchh
Confidence            6677777777777777778888888888888888888777777665555

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.98  E-value=0.03  Score=70.19  Aligned_cols=53  Identities=26%  Similarity=0.270  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001620          177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF  229 (1043)
Q Consensus       177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf  229 (1043)
                      ..++..|.+.|-.|+.|.+.-...+.++...|.+++.+++.++.++..+.++.
T Consensus       176 ~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea  228 (1195)
T KOG4643|consen  176 EVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA  228 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999888764

>PRK11637 AmiB activator; Provisional

Probab=97.93  E-value=0.0038  Score=72.87  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRS  431 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~es  431 (1043)
                      .++.....++.+.+..++............+..+..+|.....+-...+..|..+.......+.+++....+++.++..
T Consensus       173 ~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~  251 (428)
T PRK11637        173 AELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR  251 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444444444444444444444444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.93  E-value=0.006  Score=68.17  Aligned_cols=89  Identities=26%  Similarity=0.376  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      -..+..|..+|.++....       .+++++|.+|.+.....-..+..+-..+++++.+.++++..+-.+-.....+...
T Consensus       157 ~~~~~el~aei~~lk~~~-------~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee  229 (294)
T COG1340         157 NEKLKELKAEIDELKKKA-------REIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEE  229 (294)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            344444444444443333       3444444444444433333333333334444444444444433333333333333


Q ss_pred             hHHHHHHHHHHHHHHH
Q 001620          408 KKDLSSKLVEMEEKLL  423 (1043)
Q Consensus       408 Re~L~ekLkElEeel~  423 (1043)
                      ...++..|+++..++.
T Consensus       230 ~~~~~~elre~~k~ik  245 (294)
T COG1340         230 FRNLQNELRELEKKIK  245 (294)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.92  E-value=0.0066  Score=75.75  Aligned_cols=248  Identities=16%  Similarity=0.213  Sum_probs=153.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR  253 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce  253 (1043)
                      ..+..+|.+=..+|.+++++.+.+..+...+-.+|.-+...+...+.+...||.+      +|.+..|.......|....
T Consensus       290 d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd------ve~Lr~rle~k~~~l~kk~  363 (775)
T PF10174_consen  290 DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD------VEALRFRLEEKNSQLEKKQ  363 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHH
Confidence            4455778887788899999999999888888999999999999999999999888      8888888888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHH
Q 001620          254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLES  333 (1043)
Q Consensus       254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~  333 (1043)
                      ..|..++++...+..++..+...++..+.++..|...|..|+..+                          ++.+.++..
T Consensus       364 ~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l--------------------------~ekd~ql~~  417 (775)
T PF10174_consen  364 AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQL--------------------------REKDRQLDE  417 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHH
Confidence            999999999999999998888888888888888888876663322                          122445555


Q ss_pred             HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620          334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALV-QRLRTETDELQAQIRTLEDDKASLINDKKDLS  412 (1043)
Q Consensus       334 Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~I-erLr~EleELqeklkeLEeEl~~Lk~dRe~L~  412 (1043)
                      +..+++.  ..+.   .+...+...++.+.-..-.+...|..+-..- .....+++..+..++.+...+..|..+.++..
T Consensus       418 ~k~Rl~~--~~d~---~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~  492 (775)
T PF10174_consen  418 EKERLSS--QADS---SNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKE  492 (775)
T ss_pred             HHHHHhc--cccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            5555554  1111   1122223333333322222222222221111 12223344444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      ..|-.+.++...+-.....-...+..+++........+..+..+|.
T Consensus       493 ~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~  538 (775)
T PF10174_consen  493 LQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLE  538 (775)
T ss_pred             HHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4444555555544444444444444444444444444444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.89  E-value=0.0043  Score=75.54  Aligned_cols=216  Identities=18%  Similarity=0.177  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-ccccchhhHHHHHHHHHHHHHHHHHH
Q 001620          177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF-GQGIVIEDEEARTLMAAAALKSCRET  255 (1043)
Q Consensus       177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf-~~~a~IED~eARal~aE~aIksceEt  255 (1043)
                      ..+-.++++-.+.|+..+--..+|+.-...++..+|.+...+|.-+.++|+.. .....||...+|+...+.+|...-..
T Consensus        84 tqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~e  163 (1265)
T KOG0976|consen   84 TQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHD  163 (1265)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence            36777888888899999999999999999999999999999999999998863 22334555555555554433333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC-CCCCccccchhhhcccccchh----hHhhhhhhHHH
Q 001620          256 LTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSK-KIPHVKDDSVKAVEESDRSDI----DVVRTAQDRED  330 (1043)
Q Consensus       256 L~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaek-e~~~l~~~~le~iSeIpeLee----e~~~l~eEE~r  330 (1043)
                      |-..-+......+++..++....-.-.++..+++.+..+-... ++.-..++..-.+++...++.    ++..+....+-
T Consensus       164 If~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~  243 (1265)
T KOG0976|consen  164 IFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQT  243 (1265)
T ss_pred             HHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            3222222222222222222222222222222222221110000 000001110111111111111    11111111222


Q ss_pred             HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHH
Q 001620          331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQA  392 (1043)
Q Consensus       331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqe  392 (1043)
                      +..++..-.-+.+...+...+..++.|+--++.-+..-|..+.|..+..|..++.+|+.++.
T Consensus       244 ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq  305 (1265)
T KOG0976|consen  244 LTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ  305 (1265)
T ss_pred             hhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444555556666666777777777777777777777777777776654

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.87  E-value=0.0071  Score=74.68  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620          260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN  294 (1043)
Q Consensus       260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el~~L  294 (1043)
                      ++..+.++.++..+.+|+++++..++-||.++.+-
T Consensus       324 EERaesLQ~eve~lkEr~deletdlEILKaEmeek  358 (1243)
T KOG0971|consen  324 EERAESLQQEVEALKERVDELETDLEILKAEMEEK  358 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34446677777788888888888888888888654

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.85  E-value=0.012  Score=70.17  Aligned_cols=255  Identities=15%  Similarity=0.163  Sum_probs=143.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          183 LQKQILTLQTDKEFVKSSYE---NWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQM  259 (1043)
Q Consensus       183 LqkeI~~LQtEKEal~sqyq---~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eL  259 (1043)
                      +..+|..|++.-..+..+|.   ..-.++..+|..+..+|.+|..++.=      ......+-......++.+...|+.-
T Consensus       233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y------~~~~~~k~~~~~~~l~~l~~Eie~k  306 (581)
T KOG0995|consen  233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY------VSQMKSKKQHMEKKLEMLKSEIEEK  306 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            55555555555555555444   33356777777777788888777765      4444445455555556555666666


Q ss_pred             HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-H
Q 001620          260 EEEQEKSAEEAKIERKRI----------KDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-R  328 (1043)
Q Consensus       260 Eeere~s~eEa~~l~eRI----------~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-E  328 (1043)
                      +++++.+..+.+.+...|          .+...+...|..++..+..+++..  .       .++-+++-++...-.+ +
T Consensus       307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l--~-------k~vw~~~l~~~~~f~~le  377 (581)
T KOG0995|consen  307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL--S-------KEVWELKLEIEDFFKELE  377 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHhHHHHHHHHHHHHH
Confidence            666655555555555443          335555556666665555444430  0       1112222222111111 2


Q ss_pred             HHHHHHHHHHHHHHh---------cCCCcc-----------------ccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHH
Q 001620          329 EDLESLREKIKEQLE---------FGSSGS-----------------LTVTEMAEKIDEVVSKVVNLETSFSSQTALVQR  382 (1043)
Q Consensus       329 ~rLe~Ld~kInEl~e---------eke~a~-----------------lsV~ELaEkIdeLvnKV~sLE~~ISsqea~Ier  382 (1043)
                      ..+..+.+-|-.+..         +..+..                 .-+.++.+.+.+.+++...|+..++.....|+.
T Consensus       378 ~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E  457 (581)
T KOG0995|consen  378 KKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEE  457 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222211111111         111111                 113567788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          383 LRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       383 Lr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      ++..+..+..++..+++.+...+...+++..+-      ..++..+.+.+....-++.+.+.++...++...-+++
T Consensus       458 ~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~------~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~  527 (581)
T KOG0995|consen  458 KIQILGEIELELKKAESKYELKKEEAEEEWKKC------RKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELD  527 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888877777665332      2233344444444444555555555555554444443

>PRK11637 AmiB activator; Provisional

Probab=97.84  E-value=0.0085  Score=69.99  Aligned_cols=84  Identities=20%  Similarity=0.140  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ  435 (1043)
Q Consensus       356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e  435 (1043)
                      ...|+++......|+...........++...+.+++....+|+..+.........|..++.+.+..+..++...+.+...
T Consensus       169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~  248 (428)
T PRK11637        169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS  248 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555544444444455555555555555555555544444445555555555555555555555555555


Q ss_pred             HhhH
Q 001620          436 NYSF  439 (1043)
Q Consensus       436 ~~~L  439 (1043)
                      +..+
T Consensus       249 I~~l  252 (428)
T PRK11637        249 IARA  252 (428)
T ss_pred             HHHH
Confidence            4444

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.82  E-value=0.014  Score=72.80  Aligned_cols=83  Identities=14%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED  434 (1043)
Q Consensus       355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~  434 (1043)
                      ..+..+.+...+.+++...+..-+.|+.+...|++...++.++-.+...++.+.+++..+-+.+=.+=..++..+..++.
T Consensus       409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~  488 (1200)
T KOG0964|consen  409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEE  488 (1200)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566666666666666666666666666666666666666666666666655555555544444444444444


Q ss_pred             HHh
Q 001620          435 QNY  437 (1043)
Q Consensus       435 e~~  437 (1043)
                      .++
T Consensus       489 dl~  491 (1200)
T KOG0964|consen  489 DLS  491 (1200)
T ss_pred             HHH
Confidence            433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.80  E-value=0.042  Score=66.21  Aligned_cols=280  Identities=18%  Similarity=0.259  Sum_probs=135.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------hccc----------c
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE----------FGQG----------I  233 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE----------f~~~----------a  233 (1043)
                      ..+..++.++++++...+.+|--+..++...-.-+.+|..++..++.....-...          +..+          .
T Consensus        37 ~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~  116 (522)
T PF05701_consen   37 EKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKA  116 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHH
Confidence            4556778888888888888888888888888888888887777666433222111          0000          0


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccccCCCCCCCcccc
Q 001620          234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDA-------RDKFESLKHEFIGNEGSKKIPHVKDD  306 (1043)
Q Consensus       234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~ea-------E~elesLk~el~~LEaeke~~~l~~~  306 (1043)
                      .++-...|...+-++|.+..+.|.+|+.+...+...-.....++.++       ..+++.|..+|..+...++...+--.
T Consensus       117 ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~  196 (522)
T PF05701_consen  117 ELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI  196 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222333333445677777777777766655544433333333332       22333333333333222222100000


Q ss_pred             c-hhhhcccc-cchhhHhh----hhhhHHHHHHHHHHHHHHHhcCCCc---cccHHHHHHHHHHHHHhHHh----HHHhh
Q 001620          307 S-VKAVEESD-RSDIDVVR----TAQDREDLESLREKIKEQLEFGSSG---SLTVTEMAEKIDEVVSKVVN----LETSF  373 (1043)
Q Consensus       307 ~-le~iSeIp-eLeee~~~----l~eEE~rLe~Ld~kInEl~eeke~a---~lsV~ELaEkIdeLvnKV~s----LE~~I  373 (1043)
                      + -+....|- ..+..+..    +.+.+.+++.|...|.....-..+.   +.-+..|...+..+.....+    .....
T Consensus       197 eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~  276 (522)
T PF05701_consen  197 EAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKS  276 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhh
Confidence            0 00000000 00001011    1111334444444331111111111   11122222222222221111    22334


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          374 SSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       374 Ssqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      ......+..+..+|++.+..+....++...|+.....|+.+|.....++..++.........+.+|......+...|.-.
T Consensus       277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~  356 (522)
T PF05701_consen  277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA  356 (522)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence            44455577777777777777777777777777777777777777777777776666666666666665555555555444

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.80  E-value=0.0038  Score=74.71  Aligned_cols=99  Identities=11%  Similarity=0.211  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .||..+.+-|.....++..+...+..+...+.+++.+..++++.+.+-+.+      +.+...+...+++++...+..+.
T Consensus        92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~------~~~~~~~l~~leAe~~~~krr~~  165 (546)
T KOG0977|consen   92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREK------LDDYLSRLSELEAEINTLKRRIK  165 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH------HHHHhhhhhhhhhHHHHHHHHHH
Confidence            788888888888888888888888888888888888888888888877776      66666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARD  282 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~  282 (1043)
                      .|+++...+..+...+...|..++.
T Consensus       166 ~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  166 ALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            6666666665555555555555443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.79  E-value=0.015  Score=69.87  Aligned_cols=98  Identities=13%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .+++..+++...|......+..+..+...++..++..+...+++...|+..      .++.......+..+...+.....
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~------~kel~~~~e~l~~E~~~L~~q~~  216 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ------QKELTESSEELKEERESLKEQLA  216 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666666666666666666666666666666666666666555      44444444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDAR  281 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE  281 (1043)
                      ++...+..+.+++..+..+..+.+
T Consensus       217 e~~~ri~~LEedi~~l~qk~~E~e  240 (546)
T PF07888_consen  217 EARQRIRELEEDIKTLTQKEKEQE  240 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555554433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.77  E-value=0.033  Score=66.95  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620          369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS----SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT  444 (1043)
Q Consensus       369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~----ekLkElEeel~evq~l~esVe~e~~~L~srft  444 (1043)
                      |...+..-...|.+|..++..+.+.+++=-.++.-|..+-...+    -.|.+...++.+++...+.++.+-.-|+...-
T Consensus       362 l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ  441 (546)
T PF07888_consen  362 LQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ  441 (546)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444555555555554444443333333333322222    46777788888888888888888888888888


Q ss_pred             HHHHhHHHHHHhhccc
Q 001620          445 EARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       445 Ea~~~L~eLseeL~s~  460 (1043)
                      ++..-|..|+..|.-+
T Consensus       442 eL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  442 ELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888888777654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.76  E-value=0.066  Score=65.05  Aligned_cols=267  Identities=16%  Similarity=0.229  Sum_probs=135.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh--hHHHHHHHHHHHHH
Q 001620          173 KAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE--DEEARTLMAAAALK  250 (1043)
Q Consensus       173 fseAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE--D~eARal~aE~aIk  250 (1043)
                      +.+|.+-+..|+..+..|+...+.+=.-|..+...+   -.++.+++.-...+..+   |-.++  +...+...+...+.
T Consensus       189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~---P~ql~eL~~gy~~m~~~---gy~l~~~~i~~~i~~i~~~l~  262 (560)
T PF06160_consen  189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEF---PDQLEELKEGYREMEEE---GYYLEHLDIEEEIEQIEEQLE  262 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---HHHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHH
Confidence            467778888888888888888888777777766432   33444444444444332   22222  24566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHH
Q 001620          251 SCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDRED  330 (1043)
Q Consensus       251 sceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~r  330 (1043)
                      +|...|.+|  +...+...+..+..+|+.+=+.++.=-......+                ..++.+...+..+...-..
T Consensus       263 ~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~----------------~~~~~l~~~l~~~~~~~~~  324 (560)
T PF06160_consen  263 EALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE----------------KNLKELYEYLEHAKEQNKE  324 (560)
T ss_pred             HHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHHHHHHHHHHHHHH
Confidence            666666665  3444444444444444443222211110000000                0111122222222222111


Q ss_pred             HHHHHHHHHHHHhcCCCccccH-------HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          331 LESLREKIKEQLEFGSSGSLTV-------TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKAS  403 (1043)
Q Consensus       331 Le~Ld~kInEl~eeke~a~lsV-------~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~  403 (1043)
                      +..--..++.-..-...-...+       ..+....+.+..++.+-....|...+..+.+...+++..+....+.+.+..
T Consensus       325 l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~  404 (560)
T PF06160_consen  325 LKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQS  404 (560)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111111111111222       333344455555555555555666666666666666666666666666666


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHhHHHHHHhhcccCch
Q 001620          404 LINDKKDLSSKLVEMEEKLLRLHDLNRSVED--QNYSFQTHLTEARYNIDHLSHKLKIQKTD  463 (1043)
Q Consensus       404 Lk~dRe~L~ekLkElEeel~evq~l~esVe~--e~~~L~srftEa~~~L~eLseeL~s~~~~  463 (1043)
                      |+.+=...++++..+..++..+++.++..+-  --......|..+...|..+...|..+..+
T Consensus       405 L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pin  466 (560)
T PF06160_consen  405 LRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPIN  466 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            6666666666666666666666665554432  00344567888888888888888765443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.75  E-value=0.021  Score=70.69  Aligned_cols=22  Identities=14%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             hhhhHHHhhhhhHHHHHHHHhh
Q 001620          831 ASFHQIQKFDTEVKDLKNDISK  852 (1043)
Q Consensus       831 ts~hqiQkFqt~~~dLq~el~k  852 (1043)
                      -.+|.|-+|+++|.+++.-+.+
T Consensus       998 ~~~h~v~~~~ek~ee~~a~lr~ 1019 (1243)
T KOG0971|consen  998 DADHRVEKVQEKLEETQALLRK 1019 (1243)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999888875

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.75  E-value=0.0081  Score=79.47  Aligned_cols=108  Identities=22%  Similarity=0.294  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .+|..|+..+..+..+++|++.+|..+..-|...+.++..+.++-..|+.-      |-+-+...-.+...|-.|.+.++
T Consensus       668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~------i~~~~q~~~~~s~eL~~a~~k~~  741 (1822)
T KOG4674|consen  668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQST------ISKQEQTVHTLSQELLSANEKLE  741 (1822)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhHHHH
Confidence            455555555555555555555555555555555555555555555555554      54444555555566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      .|+.+...+..+-..+..--.++-.++.+|-.+.
T Consensus       742 ~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~  775 (1822)
T KOG4674|consen  742 KLEAELSNLKQEKLLLKETEERLSQELEKLSAEQ  775 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655555554444444444444444443333

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.74  E-value=0.0048  Score=77.50  Aligned_cols=251  Identities=15%  Similarity=0.189  Sum_probs=159.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR  253 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce  253 (1043)
                      .++..+|.+++++|..++..+++...++...-.+...+.+++..+...++......+.       ..+...++...-.|.
T Consensus       230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-------rp~li~~ke~~~~~k  302 (1141)
T KOG0018|consen  230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-------RPELIKVKENASHLK  302 (1141)
T ss_pred             hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHhhcchhhccch
Confidence            4555888999999999998888888888888888888888888888888888666322       222333334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhH---hhhhhhHHH
Q 001620          254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDV---VRTAQDRED  330 (1043)
Q Consensus       254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~---~~l~eEE~r  330 (1043)
                      ..|..++..+......+......|.+.+..+.++...-...+.+...-...+     .++++..+..+   .++.++-..
T Consensus       303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~r-----g~~lnl~d~~~~ey~rlk~ea~~  377 (1141)
T KOG0018|consen  303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQER-----GSELNLKDDQVEEYERLKEEACK  377 (1141)
T ss_pred             hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccCCcchHHHHHHHHHHHHHhh
Confidence            5555555555555555544444444444444444333322222221110000     02333333332   333333000


Q ss_pred             HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 001620          331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKD  410 (1043)
Q Consensus       331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~  410 (1043)
                       ++ ..+|.-++..       +..-.+..+.+.++.++++.++......|+|+...++.|...+.+++...+++..+-..
T Consensus       378 -~~-~~el~~ln~~-------~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~  448 (1141)
T KOG0018|consen  378 -EA-LEELEVLNRN-------MRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDS  448 (1141)
T ss_pred             -hh-HHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence             00 1222222221       12233445778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620          411 LSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTE  445 (1043)
Q Consensus       411 L~ekLkElEeel~evq~l~esVe~e~~~L~srftE  445 (1043)
                      |...+..++++-.++...+..+..++..+...+.+
T Consensus       449 l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e  483 (1141)
T KOG0018|consen  449 LESLVSSAEEEPYELNEELVEVLDQLLDASADRHE  483 (1141)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            99999999999998888888888887776655543

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.74  E-value=0.067  Score=60.08  Aligned_cols=82  Identities=16%  Similarity=0.334  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620          376 QTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSH  455 (1043)
Q Consensus       376 qea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLse  455 (1043)
                      ..+.+..|..++++++....++-+++..|..+...-.+++.++-++.++++.....+|.+...+.....+++..|..+..
T Consensus       156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~  235 (294)
T COG1340         156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN  235 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33455555555555555555555555555555555555555555555555555555555555555555555555444444


Q ss_pred             hh
Q 001620          456 KL  457 (1043)
Q Consensus       456 eL  457 (1043)
                      .|
T Consensus       236 el  237 (294)
T COG1340         236 EL  237 (294)
T ss_pred             HH
Confidence            43

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.66  E-value=0.015  Score=76.97  Aligned_cols=227  Identities=17%  Similarity=0.194  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhH-------------------
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDE-------------------  238 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~-------------------  238 (1043)
                      .=|..|+++..-+.++.+-++..-.....++..+.+.+.+++.-+...+..+...+++-+-                   
T Consensus      1153 ~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~ 1232 (1822)
T KOG4674|consen 1153 NIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNK 1232 (1822)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHH
Confidence            3344455555555555555555555555555555555555555554444444444433321                   


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchh
Q 001620          239 ---------EARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVK  309 (1043)
Q Consensus       239 ---------eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le  309 (1043)
                               ..+.-.+..++..++..|..|+.....+..++......+..++.+..-++.....+.....++.       
T Consensus      1233 ~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d------- 1305 (1822)
T KOG4674|consen 1233 VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSD------- 1305 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------
Confidence                     1122222233334444444444444444444444444444444444444444443322111100       


Q ss_pred             hhcccccchhhHhhhhhh----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHH
Q 001620          310 AVEESDRSDIDVVRTAQD----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRT  385 (1043)
Q Consensus       310 ~iSeIpeLeee~~~l~eE----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~  385 (1043)
                       ...+..|..++.++.++    +..++++..+++.+.          .-+..+.+.+.+-+.++...|........+|..
T Consensus      1306 -~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q----------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~ 1374 (1822)
T KOG4674|consen 1306 -KNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ----------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAA 1374 (1822)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12344455566666555    555555555555554          233455566666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 001620          386 ETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKL  422 (1043)
Q Consensus       386 EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel  422 (1043)
                      ...++.+++-++..-+.....-++....++.+..+++
T Consensus      1375 ~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~ 1411 (1822)
T KOG4674|consen 1375 ALSEKNAQELELSDKKKAHELMQEDTSRKLEKLKEKL 1411 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666655555555555444444444444444444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.62  E-value=0.034  Score=74.01  Aligned_cols=202  Identities=9%  Similarity=0.083  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .|...|=++++....++...+..+.....++..++..+.++..++..|+.+......--....+.......+..+...+.
T Consensus       279 eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~Le  358 (1486)
T PRK04863        279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLE  358 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555566677777777777777777777777777777777777766621111111111122222344455555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK  337 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k  337 (1043)
                      .|+..+......+.....++..++.++..+..++..+..+...                +...+..+   ..++..+...
T Consensus       359 ELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae----------------lqqel~el---Q~el~q~qq~  419 (1486)
T PRK04863        359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD----------------YQQALDVQ---QTRAIQYQQA  419 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH---HHHHHHHHHH
Confidence            5555555555555555555555555555555555433222111                11111122   2333333333


Q ss_pred             HHHHHhc---CCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          338 IKEQLEF---GSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE  398 (1043)
Q Consensus       338 InEl~ee---ke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE  398 (1043)
                      +..+...   ..-..++.++|...++....++..++..+...+.....++..+..+++....+-
T Consensus       420 i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~  483 (1486)
T PRK04863        420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR  483 (1486)
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322222   223467887777777777777666666666666666666666666555554443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.60  E-value=0.054  Score=66.55  Aligned_cols=139  Identities=17%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             cccccchhhHhhhhhh-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHH-----------hhhhhHHH
Q 001620          312 EESDRSDIDVVRTAQD-REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLET-----------SFSSQTAL  379 (1043)
Q Consensus       312 SeIpeLeee~~~l~eE-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~-----------~ISsqea~  379 (1043)
                      +.|.+....+.....+ +..+..+..+-.-+-.+.+-.+..|.++.+..+.+.........           ++-..+++
T Consensus       252 s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrq  331 (1265)
T KOG0976|consen  252 SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQ  331 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            4444444444333333 44444444443444445555666777888887777665554433           33445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          380 VQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       380 IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      +-.++.+|-+-+-+.+.+.+.+.+|...|+.+....+.+.+++..++...+++-.       -.++....|+.+...+
T Consensus       332 kadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~-------l~aerqeQidelKn~i  402 (1265)
T KOG0976|consen  332 KADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLE-------LQAERQEQIDELKNHI  402 (1265)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence            5566665555555555555555555555555555444444444444444444333       3344444444444433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.56  E-value=0.053  Score=63.46  Aligned_cols=51  Identities=22%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          241 RTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       241 Ral~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      +...++..|++.+..|..++.++..+..+...+..+|.+++..+..|..+.
T Consensus        60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344455556666666666666666666666666666666666666665444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.54  E-value=0.1  Score=67.03  Aligned_cols=30  Identities=20%  Similarity=0.124  Sum_probs=18.4

Q ss_pred             hhhhHHHhhhhhHHHHHHHHhhhhhHHHHh
Q 001620          831 ASFHQIQKFDTEVKDLKNDISKLVSKLEEK  860 (1043)
Q Consensus       831 ts~hqiQkFqt~~~dLq~el~k~~~~l~~~  860 (1043)
                      +....++.-+..++-+..+|..++++|-.-
T Consensus      1051 ~~~i~~~~~~~~id~~~~~I~~l~~~L~~~ 1080 (1317)
T KOG0612|consen 1051 EESIRKILLQMIIDSKASEIEELRSKLYEI 1080 (1317)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHhhhHHH
Confidence            444556666677777777777655555443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.53  E-value=0.052  Score=66.85  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 001620          204 WLAKYWDIEEQIKELQQRVYSL  225 (1043)
Q Consensus       204 ~lekl~eLE~qISeaQeeV~~L  225 (1043)
                      ...++.+++.++.+++.++..+
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l  228 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDL  228 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.51  E-value=0.062  Score=67.41  Aligned_cols=262  Identities=15%  Similarity=0.209  Sum_probs=156.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          193 DKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE-FGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAK  271 (1043)
Q Consensus       193 EKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE-f~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~  271 (1043)
                      +|+--..+|--....+.++..++..+.......-.+ -.....+++.+++...+...|..++..|..|.++.+.+..+-.
T Consensus       217 dk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t  296 (1200)
T KOG0964|consen  217 DKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET  296 (1200)
T ss_pred             HHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455444444444444444444333322111 0001124555566667777888888888888887777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhh-cccccchhhHhhhhhh-----------HHHHHHHHHHHH
Q 001620          272 IERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAV-EESDRSDIDVVRTAQD-----------REDLESLREKIK  339 (1043)
Q Consensus       272 ~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~i-SeIpeLeee~~~l~eE-----------E~rLe~Ld~kIn  339 (1043)
                      ...+....++-+++.|..++.............   |.++ ++|++-..+++.+...           ..||..|..+..
T Consensus       297 ~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~---l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~  373 (1200)
T KOG0964|consen  297 KISKKKTKLELKIKDLQDQITGNEQQRNLALHV---LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR  373 (1200)
T ss_pred             HHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            777777777888888888777664443332211   1122 3555554444444211           455666666655


Q ss_pred             HHHhcC-CCccccHH-----HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 001620          340 EQLEFG-SSGSLTVT-----EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSS  413 (1043)
Q Consensus       340 El~eek-e~a~lsV~-----ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~e  413 (1043)
                      .+.... .|+--+-.     =++..|..+.--|.+......-.+..|.+++.++.++-+++++|+..+.+.+..-+++-.
T Consensus       374 ~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~  453 (1200)
T KOG0964|consen  374 DLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDA  453 (1200)
T ss_pred             HHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHH
Confidence            554432 12211211     144456677777777777777777777777777777778888888887777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          414 KLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       414 kLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      ++..+..+++++++.-..+=.+...|+.....+...|..-...|
T Consensus       454 ~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L  497 (1200)
T KOG0964|consen  454 ENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNL  497 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888777777776666666666555555554443333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.50  E-value=0.085  Score=69.34  Aligned_cols=119  Identities=14%  Similarity=0.282  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL-------QAQIRTLEDD  400 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL-------qeklkeLEeE  400 (1043)
                      ..++..++...+..+..+.--..+|.++..+|.+|...+...+    .....|.+.+.-..+.       ..+...+..+
T Consensus       749 ~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie----~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~  824 (1201)
T PF12128_consen  749 KEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIE----ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQ  824 (1201)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence            6777777777777666665555577777777776666554433    3334444444433333       3334444444


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      +..+......+..++..+..   .++.....++.....+.....++...+..|
T Consensus       825 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~le~~~~~~~~~~~~~~~~l~~l  874 (1201)
T PF12128_consen  825 LRDLEQELQELEQELNQLQK---EVKQRRKELEEELKALEEQLEQLEEQLRRL  874 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444433333222   222233333344444444444444444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.50  E-value=0.088  Score=64.02  Aligned_cols=78  Identities=22%  Similarity=0.314  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccCc
Q 001620          385 TETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKT  462 (1043)
Q Consensus       385 ~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~~  462 (1043)
                      ..+..+......+...+..=..--+.+.+.+.++.+.+..+......+...+.+|+..-.+|...|..++..|+..+-
T Consensus       351 ~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR  428 (560)
T PF06160_consen  351 KQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR  428 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333334445566666666666666666666666666666666666666666666665543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=0.065  Score=67.91  Aligned_cols=234  Identities=11%  Similarity=0.130  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQME  260 (1043)
Q Consensus       181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLE  260 (1043)
                      .+|..+|..|+. +..   ....+..++..|+.+|.-+.-++..+...      ++.++-.....+..|....-.|..++
T Consensus       662 ~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~------l~~~~~El~~~~~~i~~~~p~i~~i~  731 (1141)
T KOG0018|consen  662 ERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRS------LEQNELELQRTESEIDEFGPEISEIK  731 (1141)
T ss_pred             HHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCchHHHHH
Confidence            344455555554 222   56666677777777777777776666544      66666667777777777778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHH
Q 001620          261 EEQEKSAEEAKIERKRIKDARDKFE-SLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIK  339 (1043)
Q Consensus       261 eere~s~eEa~~l~eRI~eaE~ele-sLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kIn  339 (1043)
                      .++......|+.+.+++..+++.+- .+-..++                  +. |.+-++.- ..++...+...++..|.
T Consensus       732 r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ig------------------v~-ir~Yee~~-~~~~~a~k~~ef~~q~~  791 (1141)
T KOG0018|consen  732 RKLQNREGEMKELEERMNKVEDRIFKGFCRRIG------------------VR-IREYEERE-LQQEFAKKRLEFENQKA  791 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------------------ee-eehHHHHH-HHHHHHHHHHHHHHHHH
Confidence            8888888888888888888777653 2322222                  11 33222221 12222334444444444


Q ss_pred             HHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001620          340 EQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEME  419 (1043)
Q Consensus       340 El~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElE  419 (1043)
                      .+...-++...  .|...+++.+...|.+++..+.......+++...|++.    .++|.        ++  +.+...++
T Consensus       792 ~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~----~~~e~--------k~--k~~~~~~~  855 (1141)
T KOG0018|consen  792 KLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI----EELEK--------KN--KSKFEKKE  855 (1141)
T ss_pred             HHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH----HHHHH--------HH--HHHHHHHH
Confidence            43333332222  66777777777777777777777777777777666666    22222        11  55666677


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          420 EKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       420 eel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      .++.++......+-.+++.|....+.+++.|+.+..+-|+.
T Consensus       856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~l  896 (1141)
T KOG0018|consen  856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNL  896 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence            77777777777777788888888888888888877766653

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.37  E-value=0.16  Score=62.66  Aligned_cols=50  Identities=18%  Similarity=0.312  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001620          180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF  229 (1043)
Q Consensus       180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf  229 (1043)
                      +..+.+++..|+.+...+..+++....++..++.++..++.++..++..|
T Consensus       204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~  253 (650)
T TIGR03185       204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF  253 (650)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666654

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.33  E-value=0.2  Score=61.45  Aligned_cols=210  Identities=15%  Similarity=0.209  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHH
Q 001620          175 EGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRE  254 (1043)
Q Consensus       175 eAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceE  254 (1043)
                      +.+.+++.|+++|..|.++.+.+...+..+...+..+..++...+.....++.++.          ...++..-+..-++
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~----------l~~k~~~lL~d~e~  394 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK----------LKKKTVELLPDAEE  394 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhcCcHH
Confidence            44478888888888888888888888888888888888888888777777766632          22223333444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHH
Q 001620          255 TLTQMEEEQEKSAEEAKIERKRIKDARDK----FESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDRED  330 (1043)
Q Consensus       255 tL~eLEeere~s~eEa~~l~eRI~eaE~e----lesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~r  330 (1043)
                      -|.+|+.-...+...+..+..+-+..+..    +..|+......    ..   ..  ...+.+|..+..++..+..+   
T Consensus       395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~----~~---e~--~~~~~~ik~~r~~~k~~~~e---  462 (594)
T PF05667_consen  395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNR----ES---ES--KQKLQEIKELREEIKEIEEE---  462 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc----ch---HH--HHHHHHHHHHHHHHHHHHHH---
Confidence            56677777777777777776666665443    33333333211    11   01  11223344444443333333   


Q ss_pred             HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 001620          331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKD  410 (1043)
Q Consensus       331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~  410 (1043)
                      ++..+..++.|..+-+.....+     .+.....+|-++-.+|-.|.+.|.+.-.++..+++.+..+.+.+.-=..--++
T Consensus       463 ~~~Kee~~~qL~~e~e~~~k~~-----~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE  537 (594)
T PF05667_consen  463 IRQKEELYKQLVKELEKLPKDV-----NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE  537 (594)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3333333333222221122222     25667888888888889999999999999999999999988877543333333


Q ss_pred             H
Q 001620          411 L  411 (1043)
Q Consensus       411 L  411 (1043)
                      |
T Consensus       538 l  538 (594)
T PF05667_consen  538 L  538 (594)
T ss_pred             H
Confidence            3

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.32  E-value=0.25  Score=56.13  Aligned_cols=240  Identities=18%  Similarity=0.296  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .++..+++....|+-+++.+..++..+...-.-|+.==-++|.+-..+.++-  ...+...+.+...+   ....+.+|.
T Consensus        43 k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~--~~~~~eee~kR~el---~~kFq~~L~  117 (309)
T PF09728_consen   43 KQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEES--KRRAREEEEKRKEL---SEKFQATLK  117 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHH
Confidence            6667777888888888888888888888888888888788888888886661  11222222222222   334457777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhh---------hhH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA---------QDR  328 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~---------eEE  328 (1043)
                      .++..++.-...-..+...-..+..+++.|-..+.-          +..++..+-+-.+|+.++...+         .+.
T Consensus       118 dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~----------rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~  187 (309)
T PF09728_consen  118 DIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL----------REEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEK  187 (309)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            777777766666666666667777777777666541          1111223333333333332211         112


Q ss_pred             HHHHHHHH-------HHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          329 EDLESLRE-------KIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK  401 (1043)
Q Consensus       329 ~rLe~Ld~-------kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl  401 (1043)
                      .+...+..       .+..+..       +-.+|...+.-.++|-......++..+.....++.|++.+.++++.||.+.
T Consensus       188 ~k~~~~~~~~l~~~~~~~~~~~-------~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~  260 (309)
T PF09728_consen  188 EKAKQEKEILLEEAAQVQTLKE-------TEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKEN  260 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333       3333333       337888899999999999999999999999999999999999999999999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001620          402 ASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSF  439 (1043)
Q Consensus       402 ~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L  439 (1043)
                      ..++..-+.-+..|-++-++.......+..+..++..|
T Consensus       261 ~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL  298 (309)
T PF09728_consen  261 QTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL  298 (309)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888877777777774433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.31  E-value=0.048  Score=65.64  Aligned_cols=88  Identities=23%  Similarity=0.235  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          196 FVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI-VI-EDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIE  273 (1043)
Q Consensus       196 al~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a-~I-ED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l  273 (1043)
                      .+...+-..++|+--||.+-..++-+|..|+.-|+.+. .| .-.++....+...|.+.....++++-++..+..+.+.+
T Consensus        46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el  125 (546)
T KOG0977|consen   46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKEL  125 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34455666777888888888888888888888775542 22 22334444444444444444555555555555555555


Q ss_pred             HHHHHHHHHH
Q 001620          274 RKRIKDARDK  283 (1043)
Q Consensus       274 ~eRI~eaE~e  283 (1043)
                      ..+..++...
T Consensus       126 r~~~~~~~k~  135 (546)
T KOG0977|consen  126 RKKLEKAEKE  135 (546)
T ss_pred             HHHHHHHHHH
Confidence            5555444333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.29  E-value=0.32  Score=61.54  Aligned_cols=43  Identities=30%  Similarity=0.380  Sum_probs=30.5

Q ss_pred             cccccCccccccccCCCCCCchHHHHhHHHHHHHHHHHHHHhhhc
Q 001620            3 QRAASNAYSWWWASHIRTKQSKWLEQNLQDLEEKVAYTLKLIEED   47 (1043)
Q Consensus         3 qRAAsn~~~ww~~shi~~~~s~wL~~~l~dmd~kvk~~l~li~ed   47 (1043)
                      +|-++-+|+...  -+..+++.-|..+|+|++.|++.+---++|-
T Consensus       154 s~s~~~~~~sp~--~~~~~~~~hL~velAdle~kir~LrqElEEK  196 (1195)
T KOG4643|consen  154 SRSGKELYKSPY--DIVVKKNLHLEVELADLEKKIRTLRQELEEK  196 (1195)
T ss_pred             cccCCCCCCCcc--hhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444554443  4567888899999999999998887766643

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.28  E-value=0.16  Score=62.51  Aligned_cols=224  Identities=18%  Similarity=0.284  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          183 LQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEE  262 (1043)
Q Consensus       183 LqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEee  262 (1043)
                      |.+.|..|+.||+..-..|+.-..   .+..++..|..+|+.|..+      .+..-.+       +..++..|.+|+..
T Consensus         2 l~e~l~qlq~Erd~ya~~lk~e~a---~~qqr~~qmseev~~L~eE------k~~~~~~-------V~eLE~sL~eLk~q   65 (617)
T PF15070_consen    2 LMESLKQLQAERDQYAQQLKEESA---QWQQRMQQMSEEVRTLKEE------KEHDISR-------VQELERSLSELKNQ   65 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH------HHHHHHH-------HHHHHHHHHHHHHh
Confidence            456677788888877766664433   2456666777777777555      3333333       33344444444433


Q ss_pred             HHHHH---------HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh-hHHHHH
Q 001620          263 QEKSA---------EEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ-DREDLE  332 (1043)
Q Consensus       263 re~s~---------eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e-EE~rLe  332 (1043)
                      +....         +.-..+..++..+..+++.|...+.       . .     ++.       ...++.+.. .+.+|.
T Consensus        66 ~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq-------a-q-----v~~-------ne~Ls~L~~EqEerL~  125 (617)
T PF15070_consen   66 MAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ-------A-Q-----VEN-------NEQLSRLNQEQEERLA  125 (617)
T ss_pred             hcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-------H-H-----HHH-------HHHHHHHHHHHHHHHH
Confidence            32100         0001122222223333333332221       1 0     000       112233332 266777


Q ss_pred             HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH---
Q 001620          333 SLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK---  409 (1043)
Q Consensus       333 ~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe---  409 (1043)
                      .++..+..+.+..       .|    ...+...+.+=...||-+-++-..|+..+.+++...-.|..++.+|+....   
T Consensus       126 ELE~~le~~~e~~-------~D----~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq  194 (617)
T PF15070_consen  126 ELEEELERLQEQQ-------ED----RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ  194 (617)
T ss_pred             HHHHHHHHHHHHH-------HH----HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence            7776666654322       33    333444444444455555555567888888888888888888776666544   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          410 ----DLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       410 ----~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                          +|..+|-+++.++..++..+..-..++.+|+....++...|..-
T Consensus       195 ~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy  242 (617)
T PF15070_consen  195 HVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY  242 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence                45566666666666666666666566666666666554444444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.15  Score=64.44  Aligned_cols=44  Identities=16%  Similarity=0.092  Sum_probs=21.0

Q ss_pred             HHHHHHHHhhhcCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 001620           36 KVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAERY   83 (1043)
Q Consensus        36 kvk~~l~li~ed~dsfakraemyy~kRpeLi~~vee~~r~Yr~Laery   83 (1043)
                      +++.-|..+.-+.+-|    +.--++|-.|...+-.+-+.|..|--||
T Consensus       459 ~l~~~l~~l~~~~~~~----e~l~q~~~~l~~~~~~lk~~~~~l~a~~  502 (1174)
T KOG0933|consen  459 KLKKRLQSLGYKIGQE----EALKQRRAKLHEDIGRLKDELDRLLARL  502 (1174)
T ss_pred             HHHHHHHhcCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444444444333331    2233445555555555555555555554

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.22  E-value=0.25  Score=63.19  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=11.9

Q ss_pred             hHHHHHHHHhhhHHHHHHhhhhh
Q 001620          705 ILAEYTTVLRNYKEAKKKLDESG  727 (1043)
Q Consensus       705 LL~eYtsvLrnYke~k~kL~e~E  727 (1043)
                      ++....+.+.+|...++++..+.
T Consensus       717 ~~~~l~~~~~~~~~~~~~~~~~~  739 (908)
T COG0419         717 LIEELESRKAELEELKKELEKLE  739 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555554444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.20  E-value=0.094  Score=55.81  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHH
Q 001620          176 GLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRET  255 (1043)
Q Consensus       176 Ae~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEt  255 (1043)
                      |+.+|..|..+|..|+.+.+.....|.....++.+++.--.+....+..|...      ...++.+...++..++.++-.
T Consensus         2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr------~~kdEE~~e~~e~qLkEAk~i   75 (205)
T KOG1003|consen    2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENR------AQKLEEKMEAQEAQLKEAKHI   75 (205)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999998887776666666555444      344445666666666666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          256 LTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       256 L~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      -..-..+-+.+.--+..+.+.+.+++..++.-...+
T Consensus        76 aE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~  111 (205)
T KOG1003|consen   76 AEKADRKYEEVARKLVIIEGELERAEERAEAAESQS  111 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.19  E-value=0.28  Score=61.25  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      ..|.+.|+.+|..+..+-       ....|.+..++..+..|..-..+....++.|-..|..++++=..||.-|.+=..=
T Consensus       544 r~r~~~lE~E~~~lr~el-------k~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtri  616 (697)
T PF09726_consen  544 RQRRRQLESELKKLRREL-------KQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRI  616 (697)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            444455555555544332       1222333333333333332223334456666666666666666666666554444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620          408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL  443 (1043)
Q Consensus       408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srf  443 (1043)
                      .-+|=..|-+++..+.-++..+..-+.++..|+.++
T Consensus       617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki  652 (697)
T PF09726_consen  617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI  652 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666665555555555555544444333

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.1  Score=64.20  Aligned_cols=68  Identities=22%  Similarity=0.348  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhHH-------hHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVV-------NLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE  420 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~-------sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEe  420 (1043)
                      .-|..++.+|..|+.       .....|...+.++++...+++.|+.+++++.+-+--|.-++..|.++|+.+..
T Consensus       447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~  521 (1118)
T KOG1029|consen  447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS  521 (1118)
T ss_pred             HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            334444555555544       45567777778888899999999999999999999999999999987776543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.17  E-value=0.16  Score=66.93  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          415 LVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       415 LkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      +..++.+...++...+....++..++..+.++...+..|...|
T Consensus       492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333333333333344444444445555555555554443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.12  E-value=0.00011  Score=92.43  Aligned_cols=254  Identities=18%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQME  260 (1043)
Q Consensus       181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLE  260 (1043)
                      ..|...+..-+.|..++...++.-......+.++|.++|.+|..|+++      ++..-.-..+++.+-..+...|..|.
T Consensus         7 ~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~ee------Le~Er~~R~kaek~r~dL~~ELe~l~   80 (859)
T PF01576_consen    7 EELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEE------LESERQARAKAEKQRRDLSEELEELK   80 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666677777777788888888888888888888888888877      55444444556666666777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC--CCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHH
Q 001620          261 EEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKK--IPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKI  338 (1043)
Q Consensus       261 eere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke--~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kI  338 (1043)
                      .....+......-.+-..+-+.++..|+..+......-+  ...++.++   ...+.+|..+++.+......+       
T Consensus        81 ~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh---~~~~~eL~eqle~lqk~k~~l-------  150 (859)
T PF01576_consen   81 ERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKH---QDAVAELNEQLEQLQKQKAKL-------  150 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHH-------
Confidence            777666665554444445556677777776653222111  11121111   124455555555544331111       


Q ss_pred             HHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620          339 KEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM  418 (1043)
Q Consensus       339 nEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl  418 (1043)
                         --.+.....-+.+|...++.+...+++.+..+...++++..++..+++....+.+|...+.-|..+.+.|...+.++
T Consensus       151 ---EK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~  227 (859)
T PF01576_consen  151 ---EKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEA  227 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11122222233444444444555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          419 EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       419 Eeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      +..+..+.+....+..++..++..+.+-...-..|
T Consensus       228 e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L  262 (859)
T PF01576_consen  228 ESQLSQLQREKSSLESQLEELKRQLEEETRAKQAL  262 (859)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhh
Confidence            54444444444444444444444444333333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.09  E-value=0.014  Score=63.74  Aligned_cols=111  Identities=18%  Similarity=0.279  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR  253 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce  253 (1043)
                      .++..++.++.+.+.+++.+.+.+..++.+....|.+++.++..++.......+..    .+.++..+.-.+...+.+++
T Consensus        34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~----e~~aL~~E~~~ak~r~~~le  109 (239)
T COG1579          34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER----ELRALNIEIQIAKERINSLE  109 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHHHHHHHHHHH
Confidence            56668999999999999999999999999999999999999999988887665541    12222233333333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK  288 (1043)
Q Consensus       254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk  288 (1043)
                      ..|..|.++++.+..+...+..++...+..+..++
T Consensus       110 ~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~  144 (239)
T COG1579         110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE  144 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444333333

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=97.00  E-value=0.29  Score=56.89  Aligned_cols=172  Identities=18%  Similarity=0.237  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCc----cccchhhhcccccchhhHhhh-----hhhHHHHHHHHHHHHHHHh
Q 001620          273 ERKRIKDARDKFESLKHEFIGNEGSKKIPHV----KDDSVKAVEESDRSDIDVVRT-----AQDREDLESLREKIKEQLE  343 (1043)
Q Consensus       273 l~eRI~eaE~elesLk~el~~LEaeke~~~l----~~~~le~iSeIpeLeee~~~l-----~eEE~rLe~Ld~kInEl~e  343 (1043)
                      ...++..++..|..|+..++- .... .+.+    ....  .+..+..|..++.-|     ..-+.||..|-.++..+..
T Consensus       207 ~la~~a~LE~RL~~LE~~lG~-~~~~-~~~l~~~~~~~~--l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~  282 (388)
T PF04912_consen  207 QLARAADLEKRLARLESALGI-DSDK-MSSLDSDTSSSP--LLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAE  282 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-Cccc-cccccccCCcch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457888888888888888887 2221 1111    1111  122344455555444     3338899999999888776


Q ss_pred             cCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620          344 FGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL  423 (1043)
Q Consensus       344 eke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~  423 (1043)
                      .+.... .-.+-..+|++|=+.+..++.-....=..|+||+. |..+|.....+-.-+..|.....+|...++..+.-+.
T Consensus       283 ~~~~~~-~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~t-L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~  360 (388)
T PF04912_consen  283 KRKEAK-EDAEQESKIDELYEILPRWDPYAPSLPSLVERLKT-LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLN  360 (388)
T ss_pred             cccccc-ccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554332 33466789999999999999999999999999985 7889999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          424 RLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       424 evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      .|+..   +......+...+..+...|..|
T Consensus       361 ~ve~~---~~~N~~~i~~n~~~le~Ri~~L  387 (388)
T PF04912_consen  361 KVEEK---FKENMETIEKNVKKLEERIAKL  387 (388)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence            77665   6666677777777777777655

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.1  Score=64.63  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=60.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001620          322 VRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD-  400 (1043)
Q Consensus       322 ~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE-  400 (1043)
                      .++.+...++..++..|..++.+-+.+...++.|...=--+-+..-..+.+.+.....++-....+.++.+++..|+.. 
T Consensus       806 ~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qa  885 (970)
T KOG0946|consen  806 TRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQA  885 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhh
Confidence            3333345555555555555555555444445444433333334444444445555555555555555555555555522 


Q ss_pred             ------HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001620          401 ------KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARY  448 (1043)
Q Consensus       401 ------l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~  448 (1043)
                            ++-+...+++|.-++..+..+..++.-+....+..+.+++.....+..
T Consensus       886 dse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q  939 (970)
T KOG0946|consen  886 DSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ  939 (970)
T ss_pred             cchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence                  122223334444444455555555554444444444444444333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.95  E-value=0.0002  Score=88.50  Aligned_cols=242  Identities=17%  Similarity=0.220  Sum_probs=0.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          185 KQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGI-VIEDEEARTLMAAAALKSCRETLTQMEEEQ  263 (1043)
Q Consensus       185 keI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a-~IED~eARal~aE~aIksceEtL~eLEeer  263 (1043)
                      ..+..+..+++.+...+......+..|..+...++.+...++..++... ...   .-.......+..++..|..|+.+.
T Consensus       179 ~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~ql~~L~~el  255 (713)
T PF05622_consen  179 EELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSE---EPSQHLSVELADLRAQLRRLREEL  255 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC---CcchHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555554444455555555555555444444321100 000   000011122222333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHh
Q 001620          264 EKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLE  343 (1043)
Q Consensus       264 e~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~e  343 (1043)
                      ............++..++.++..|+++...+...-..+ ..|.     .++..+.+.++++..-+..++....||.++  
T Consensus       256 ~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a-~~Lr-----DElD~lR~~a~r~~klE~~ve~YKkKLed~--  327 (713)
T PF05622_consen  256 ERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREA-RALR-----DELDELREKADRADKLENEVEKYKKKLEDL--  327 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            33333333334444444455555555544442221110 0111     234444444444444455666666555554  


Q ss_pred             cCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620          344 FGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL  423 (1043)
Q Consensus       344 eke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~  423 (1043)
                        .+..-.|.+|.++...++++++.||......    ..++..++.++..+.+|+.++.........+..++..+.+++.
T Consensus       328 --~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~----~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~  401 (713)
T PF05622_consen  328 --EDLKRQVKELEEDNAVLLETKAMLEEELKKA----RALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLE  401 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4455577888888888888888888776543    3356666667777777776666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHhhHHHHH
Q 001620          424 RLHDLNRSVEDQNYSFQTHL  443 (1043)
Q Consensus       424 evq~l~esVe~e~~~L~srf  443 (1043)
                      .+......+..+...|+...
T Consensus       402 ~l~~eke~l~~e~~~L~e~~  421 (713)
T PF05622_consen  402 ALEEEKERLQEERDSLRETN  421 (713)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66555555555544444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.93  E-value=0.15  Score=56.66  Aligned_cols=45  Identities=11%  Similarity=0.150  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKF  284 (1043)
Q Consensus       240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~el  284 (1043)
                      +.+..+-..+.+.++.+.+++.+++.+..+++.+.++|.+-...+
T Consensus        59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l  103 (265)
T COG3883          59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL  103 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555666666666666665544443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.90  E-value=0.00023  Score=89.63  Aligned_cols=263  Identities=17%  Similarity=0.223  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      ..|+.+++.....+.-+-.+..++..+-.++.+.++.++++......|+.+      +.+........+..+..+.....
T Consensus       166 ~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E------~~eL~~qLee~e~~~~~l~r~k~  239 (859)
T PF01576_consen  166 AQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSE------NSELTRQLEEAESQLSQLQREKS  239 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444455555555555555556666666655666555      44444444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLES  333 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe~  333 (1043)
                      .|+..+..+...+......-..+...+..+..++..+...+++.         ......+...+..++.+    ..+++.
T Consensus       240 ~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE---------~e~k~~l~~qlsk~~~El~~~k~K~e~  310 (859)
T PF01576_consen  240 SLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEE---------EEAKSELERQLSKLNAELEQWKKKYEE  310 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            55555555555555555555555566666666665554444431         11222333333333333    122211


Q ss_pred             -HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620          334 -LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS  412 (1043)
Q Consensus       334 -Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~  412 (1043)
                       ...++.++-+.+......+.++.+.++.+..++..|+......+..++.+..+++..+.....|+..-..+-.....++
T Consensus       311 e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k  390 (859)
T PF01576_consen  311 EAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWK  390 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence             1122333444455566677888888888888888888888777777777777777777666555554444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620          413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSH  455 (1043)
Q Consensus       413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLse  455 (1043)
                      .++..+..+++.++.-...+..++-.|+..+.++...+..+..
T Consensus       391 ~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~ler  433 (859)
T PF01576_consen  391 AKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELER  433 (859)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.88  E-value=0.58  Score=60.02  Aligned_cols=47  Identities=9%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          178 KEIDKLQKQILTLQ-----TDKEFVKSSYENWLAKYWDIEEQIKELQQRVYS  224 (1043)
Q Consensus       178 ~EIerLqkeI~~LQ-----tEKEal~sqyq~~lekl~eLE~qISeaQeeV~~  224 (1043)
                      ..|+.|+.+.+.|+     .+...+--+++...+.|.+++.-++...-+|.+
T Consensus      1492 ~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~r 1543 (1758)
T KOG0994|consen 1492 DSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIAR 1543 (1758)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHH
Confidence            66666666666665     344455555566666666666666555544443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.88  E-value=1.6  Score=54.10  Aligned_cols=110  Identities=14%  Similarity=0.193  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      ++...++.++..|-.+...++..-+....++.+|++.|++++.++......- ..+.-.   .....+.+++..|...+.
T Consensus        22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~-~pa~ps---e~E~~Lq~E~~~L~kElE   97 (617)
T PF15070_consen   22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE-PPAGPS---EVEQQLQAEAEHLRKELE   97 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc-ccccch---HHHHHHHHHHHHHHHHHH
Confidence            6777888888888888888888888888889999999988887776554221 111111   122333444555555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      .|..+...-..+...+..-+.+.+..+..|...+
T Consensus        98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~l  131 (617)
T PF15070_consen   98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEEL  131 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655544333333333333333333333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.86  E-value=0.96  Score=60.91  Aligned_cols=47  Identities=26%  Similarity=0.349  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE  398 (1043)
Q Consensus       352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE  398 (1043)
                      ..++.....+....+-+|+...+++.+.-..++..+++|..++..|+
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~  599 (1486)
T PRK04863        553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA  599 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444555555555555555555555555554444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.86  E-value=1.2  Score=59.84  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          184 QKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQ  263 (1043)
Q Consensus       184 qkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeer  263 (1043)
                      +..|..|+.+...+..++....+++..+..++..+..+...+=.+           .....+-..+..+...+.....+.
T Consensus       741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~-----------~dL~~A~~~l~~A~~~~~~a~~~l  809 (1353)
T TIGR02680       741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSD-----------RSLRAAHRRAAEAERQAESAEREL  809 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666666655555555555555666666655555555555333           222333445555555555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          264 EKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       264 e~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      ......+.....++..++..+...-.++
T Consensus       810 ~~a~~~l~~a~~~~~~a~~~l~~aaa~l  837 (1353)
T TIGR02680       810 ARAARKAAAAAAAWKQARRELERDAADL  837 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6666666666666666666655555444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.85  E-value=0.77  Score=59.47  Aligned_cols=19  Identities=37%  Similarity=0.440  Sum_probs=9.7

Q ss_pred             hccchHHHHHHHHHhhhhh
Q 001620          748 NTEKDEEIQSLRQKLSILQ  766 (1043)
Q Consensus       748 n~~Kd~eI~sLr~~l~~~~  766 (1043)
                      ...+.-+|-.||-+|-...
T Consensus      1063 id~~~~~I~~l~~~L~~~~ 1081 (1317)
T KOG0612|consen 1063 IDSKASEIEELRSKLYEIN 1081 (1317)
T ss_pred             HhhhHHHHHHHHhhhHHHh
Confidence            3345555666665444433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.82  E-value=0.13  Score=62.61  Aligned_cols=160  Identities=17%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhc
Q 001620          265 KSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEF  344 (1043)
Q Consensus       265 ~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~ee  344 (1043)
                      .+...+..+..++.-+..+..+|+.++..+..++.+..+                        .+.+..-+.-|+.+..+
T Consensus       406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~------------------------~DeLaEkdE~I~~lm~E  461 (961)
T KOG4673|consen  406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALL------------------------KDELAEKDEIINQLMAE  461 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh------------------------hHHHHHHHHHHHHHHHH
Confidence            334445555555555555555566555544433333111                        23456666677777777


Q ss_pred             CCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 001620          345 GSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLR  424 (1043)
Q Consensus       345 ke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~e  424 (1043)
                      ++..+..+..-.--|.-|-.|+..-+..+.....+|..|.+|.+.|+.-+..-|+=-..+++-..+++..+...++...+
T Consensus       462 GEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~  541 (961)
T KOG4673|consen  462 GEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSN  541 (961)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            75444444444444556666666666666666667777777777776666655554456666666677777777777777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHH
Q 001620          425 LHDLNRSVEDQNYSFQTHLTEARY  448 (1043)
Q Consensus       425 vq~l~esVe~e~~~L~srftEa~~  448 (1043)
                      .+.++..++.++-+++..|.++..
T Consensus       542 sr~~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  542 SRALAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            777777777777777777766665

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.81  E-value=0.27  Score=55.79  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          248 ALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESL  287 (1043)
Q Consensus       248 aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesL  287 (1043)
                      .+..++++|..|+++-..+..++..+.......+++-..|
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL  200 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL  200 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH
Confidence            3455555555555555555544444444444444433333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK11281 hypothetical protein; Provisional

Probab=96.81  E-value=1.1  Score=58.80  Aligned_cols=202  Identities=13%  Similarity=0.141  Sum_probs=115.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcc
Q 001620          234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEE  313 (1043)
Q Consensus       234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSe  313 (1043)
                      .+.+.+.+....+.++.+.++.|+.+....-.....-.....++.++...+..+++.+..+......  +..      +.
T Consensus       122 Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~--l~~------~~  193 (1113)
T PRK11281        122 SLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKA--LRP------SQ  193 (1113)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc--CCH------HH
Confidence            3444556666666666666666666666666666666666667777777777777766554322211  111      00


Q ss_pred             cccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001620          314 SDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ  393 (1043)
Q Consensus       314 IpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqek  393 (1043)
                      .-.+          ..++..++.++.-...+-...+...+=...++|-+-.++.-++..|...++.|+..|.+-.+...+
T Consensus       194 ~~~l----------~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~  263 (1113)
T PRK11281        194 RVLL----------QAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQ  263 (1113)
T ss_pred             HHHH----------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111          222222333322222222234444455555666666677777777777777777766665555332


Q ss_pred             HHHHHHH---------HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          394 IRTLEDD---------KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       394 lkeLEeE---------l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      .....+.         +..+-+-+..|...|..+-++++.+......+..++..+...+..+...|+-|
T Consensus       264 ~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l  332 (1113)
T PRK11281        264 EAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVL  332 (1113)
T ss_pred             HHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2211111         33344557777788888888888888777777777777777766666666554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.99  Score=56.17  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQ  435 (1043)
Q Consensus       356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e  435 (1043)
                      ...+-.+...+..+...+.......+.|+.++++.++.+..++..+..+....+.+..+.+.+++++.++.+...++...
T Consensus       544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~  623 (698)
T KOG0978|consen  544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE  623 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445555555566666666666666677777777777777777777777777777777777777777777777777666


Q ss_pred             HhhHHHHHHHHHHhHHHHHHhhcccCch
Q 001620          436 NYSFQTHLTEARYNIDHLSHKLKIQKTD  463 (1043)
Q Consensus       436 ~~~L~srftEa~~~L~eLseeL~s~~~~  463 (1043)
                      .. ..+.-..+..+|.+.++.|.++.+.
T Consensus       624 ~~-~~s~d~~L~EElk~yK~~LkCs~Cn  650 (698)
T KOG0978|consen  624 ES-GASADEVLAEELKEYKELLKCSVCN  650 (698)
T ss_pred             cc-cccccHHHHHHHHHHHhceeCCCcc
Confidence            44 2333455667888888889888765

>PF13514 AAA_27: AAA domain

Probab=96.80  E-value=1.2  Score=58.58  Aligned_cols=66  Identities=29%  Similarity=0.521  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHH-----HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKI-----DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE  398 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkI-----deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE  398 (1043)
                      ..++..+...|....     ....+.++....     +.+...+..++..+...+..+..+..++..++..+..|+
T Consensus       860 ~~~~~~~~~~l~~~~-----~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~  930 (1111)
T PF13514_consen  860 REELEDLERQLERQA-----DGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALE  930 (1111)
T ss_pred             HHHHHHHHHHHHhhc-----CcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555555543321     222445554443     444444444444444444444444444444444444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.76  E-value=0.37  Score=60.27  Aligned_cols=114  Identities=12%  Similarity=0.158  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620          333 SLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS  412 (1043)
Q Consensus       333 ~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~  412 (1043)
                      .++.+..++-.+       +.-|..+.....+.+..||..+.+......+-..+++.|-..|..+.+....|...-+.=.
T Consensus       542 ~~r~r~~~lE~E-------~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt  614 (697)
T PF09726_consen  542 SCRQRRRQLESE-------LKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET  614 (697)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            455565554332       3556666666677777777777444433233455677777777777777777755432211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      .=--.|-..|-..++-++-++.++..-...+.++...|.++
T Consensus       615 riKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  615 RIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11112333344444444444444443355555555555554

; GO: 0016021 integral to membrane

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.74  E-value=0.57  Score=50.63  Aligned_cols=195  Identities=16%  Similarity=0.270  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .-|..++.++...+.+...+...|......+..+..-+.+..+-|..+         |++.+..       .......|.
T Consensus         9 ~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~---------i~e~~~~-------~~~~~~~i~   72 (207)
T PF05010_consen    9 AAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQM---------IEEKQKQ-------KELSEAEIQ   72 (207)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HHHHHhh-------HHhHHHHHH
Confidence            567777888888888888888888888888877777777777776666         4432222       444456666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK  337 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k  337 (1043)
                      ++..++..+..++..+..-+.++-...+.++..+.+.....+.  ++          ..+.+...++..++.|++.|..-
T Consensus        73 ~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~--Lk----------k~~~ey~~~l~~~eqry~aLK~h  140 (207)
T PF05010_consen   73 KLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEET--LK----------KCIEEYEERLKKEEQRYQALKAH  140 (207)
T ss_pred             HHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH--HH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777788888888888887788877777777777666443322  11          22456667777778888888777


Q ss_pred             HHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          338 IKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN  406 (1043)
Q Consensus       338 InEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~  406 (1043)
                      -.+.+..      +-.+++.-.......+..|...+...+-.|..|...++-+.....+|..=|.+|+.
T Consensus       141 AeekL~~------ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~  203 (207)
T PF05010_consen  141 AEEKLEK------ANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELIS  203 (207)
T ss_pred             HHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544331      22444444455555555555555555555555555555555555555555554443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.70  E-value=1.3  Score=53.84  Aligned_cols=207  Identities=12%  Similarity=0.175  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchh
Q 001620          240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDI  319 (1043)
Q Consensus       240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLee  319 (1043)
                      .+...+...++-.+.-.+++..+.......+.++...|.+.+.+++.|+.+...|....+.        ..|+     .+
T Consensus       266 e~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~--------Q~iS-----~~  332 (581)
T KOG0995|consen  266 EKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL--------QGIS-----GE  332 (581)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCC-----HH
Confidence            3444444555555566666666666666777777777777777777777777666443332        1121     12


Q ss_pred             hHhhhhhh----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhh-------------------
Q 001620          320 DVVRTAQD----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQ-------------------  376 (1043)
Q Consensus       320 e~~~l~eE----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsq-------------------  376 (1043)
                      ++.+|+.+    ...|..+..++-.+..+-....+-+.+..+.|+...-.-..+-.+|..-                   
T Consensus       333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~  412 (581)
T KOG0995|consen  333 DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNG  412 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcccc
Confidence            33344333    2223333333333222222222222222222222222222222222211                   


Q ss_pred             ---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHH
Q 001620          377 ---TA-LVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT----EARY  448 (1043)
Q Consensus       377 ---ea-~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft----Ea~~  448 (1043)
                         .+ -.-.++..+++....+.+.+.++..|.+..+.+...+.+....+..++..+..+.+.-.-++....    ....
T Consensus       413 ~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~  492 (581)
T KOG0995|consen  413 VDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRK  492 (581)
T ss_pred             ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11 123566777777888888888888888887777766666655555555544444443332222211    1224


Q ss_pred             hHHHHHHhhcc
Q 001620          449 NIDHLSHKLKI  459 (1043)
Q Consensus       449 ~L~eLseeL~s  459 (1043)
                      +++.|..+|+.
T Consensus       493 E~e~le~~l~~  503 (581)
T KOG0995|consen  493 EIEKLEEELLN  503 (581)
T ss_pred             HHHHHHHHHHH
Confidence            55556555553

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=96.70  E-value=1  Score=49.75  Aligned_cols=104  Identities=15%  Similarity=0.250  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHhcC-CCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620          330 DLESLREKIKEQLEFG-SSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK  408 (1043)
Q Consensus       330 rLe~Ld~kInEl~eek-e~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR  408 (1043)
                      ..+.|-.+|...+... .........+.+.+.+...|+.+|...+..+.+.+..-..-+..-+..+.+++..+..+.+..
T Consensus       157 ~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~  236 (264)
T PF06008_consen  157 EAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ  236 (264)
T ss_pred             HHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555554222 112223345556666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          409 KDLSSKLVEMEEKLLRLHDLNRSVE  433 (1043)
Q Consensus       409 e~L~ekLkElEeel~evq~l~esVe  433 (1043)
                      ....+-|.+++.-+.....+...++
T Consensus       237 ~~~~~~L~~a~~~L~~a~~ll~~~~  261 (264)
T PF06008_consen  237 NEVSETLKEAEDLLDQANDLLQEMQ  261 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666666666666655555443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK09039 hypothetical protein; Validated

Probab=96.65  E-value=0.29  Score=56.32  Aligned_cols=139  Identities=16%  Similarity=0.219  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh
Q 001620          247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ  326 (1043)
Q Consensus       247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e  326 (1043)
                      .+|...+..|..|+.++..+.+-+.....+...++..+..|+..+..+++                              
T Consensus        46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~------------------------------   95 (343)
T PRK09039         46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEA------------------------------   95 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------------------------
Confidence            45555555566666666666666666666666666666666655541111                              


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          327 DREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN  406 (1043)
Q Consensus       327 EE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~  406 (1043)
                      ...+++....   ...       ....++..+...+......+...+++...+|.+|+.+|+.|+.++..|+..+..++.
T Consensus        96 ~r~~Le~~~~---~~~-------~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~  165 (343)
T PRK09039         96 ERSRLQALLA---ELA-------GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK  165 (343)
T ss_pred             HHHHHHHHHh---hhh-------hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112222111   110       112455666677788889999999999999999999999999999999999998888


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 001620          407 DKKDLSSKLVEMEEKLLRL  425 (1043)
Q Consensus       407 dRe~L~ekLkElEeel~ev  425 (1043)
                      ...+.+.++..++.++...
T Consensus       166 ~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        166 RDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8877777777777666655

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.63  E-value=0.00048  Score=85.13  Aligned_cols=219  Identities=19%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHH
Q 001620          180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDI-----------EEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAA  248 (1043)
Q Consensus       180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eL-----------E~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~a  248 (1043)
                      ...|..++..|+.|++.+....+.+..++..+           ..+..+++.++..|+++      +++.++........
T Consensus       195 ~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~e------l~~~e~~~~d~~~~  268 (713)
T PF05622_consen  195 CHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREE------LERLEEQRDDLKIE  268 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence            34455555556666665555554444443333           34556666677777666      33333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhH
Q 001620          249 LKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDR  328 (1043)
Q Consensus       249 IksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE  328 (1043)
                      +..++..|.+|+.+...+..    ...++..+++++..|+....++.. ++.....|+.  ++..+..+..++..+++. 
T Consensus       269 ~e~le~ei~~L~q~~~eL~~----~A~~a~~LrDElD~lR~~a~r~~k-lE~~ve~YKk--KLed~~~lk~qvk~Lee~-  340 (713)
T PF05622_consen  269 LEELEKEIDELRQENEELQA----EAREARALRDELDELREKADRADK-LENEVEKYKK--KLEDLEDLKRQVKELEED-  340 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHH-
Confidence            33334444444433332222    223344455555555544433211 1122223442  222233333332222222 


Q ss_pred             HHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620          329 EDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK  408 (1043)
Q Consensus       329 ~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR  408 (1043)
                        ...+-..+..+-+.-    .++..+...++.+...|..|+.........++++..++..|++++..|+.++..|...+
T Consensus       341 --N~~l~e~~~~LEeel----~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~  414 (713)
T PF05622_consen  341 --NAVLLETKAMLEEEL----KKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER  414 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --HHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111111111111110    12334556677777888888888888888888888888888888888888877777777


Q ss_pred             HHHHHHHHHH
Q 001620          409 KDLSSKLVEM  418 (1043)
Q Consensus       409 e~L~ekLkEl  418 (1043)
                      +.|++.+.++
T Consensus       415 ~~L~e~~eeL  424 (713)
T PF05622_consen  415 DSLRETNEEL  424 (713)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHh
Confidence            7776655444

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.61  E-value=0.12  Score=56.69  Aligned_cols=52  Identities=17%  Similarity=0.336  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL  404 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L  404 (1043)
                      .+|.-.|+.+..++++|+..+......++.|..++..++.++..++..+.++
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~  143 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA  143 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666666666666666666666666655555555555555433

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.60  E-value=1.2  Score=53.67  Aligned_cols=131  Identities=15%  Similarity=0.213  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      +.+++.|...|.+....-  ..+-+.+..+.+..+.++|-++=.-+..=-+.-+.-..-...|...+.-+.+.+..|+.+
T Consensus       254 d~~~~~L~~~l~~~~~~l--~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~E  331 (570)
T COG4477         254 DSRLERLKEQLVENSELL--TQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEE  331 (570)
T ss_pred             HHHHHHHHHHHHHHHhHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence            666666666666433222  223334444444444444443311111111111111111222333333344444444444


Q ss_pred             hHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          408 KKDLSSK----------LVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       408 Re~L~ek----------LkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      ...++..          .+..+.++.++......|-.....-..+++.+..++..+...|.++
T Consensus       332 ie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i  394 (570)
T COG4477         332 IERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDI  394 (570)
T ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence            4444422          3344455555555555555555555556666666666666655554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.48  E-value=0.061  Score=54.70  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620          390 LQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT  444 (1043)
Q Consensus       390 LqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft  444 (1043)
                      |..++.-||+++......-....++|+++..+...+.+.+..++.+......++.
T Consensus        78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            3334444444444433333333344444444444444443333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.47  E-value=0.097  Score=53.27  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRT---LEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN  429 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklke---LEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~  429 (1043)
                      ..+...|..|..|+..|+..|...+..+......+++.......   |...+..|..+-+.....|+++.+++..+....
T Consensus        31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a  110 (143)
T PF12718_consen   31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA  110 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444444444444444444444444444444433222   333333333333333344444444444444444


Q ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          430 RSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       430 esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      ..++.+...|..+.......++.+..++
T Consensus       111 e~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen  111 EHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.45  E-value=2.3  Score=50.38  Aligned_cols=81  Identities=14%  Similarity=0.192  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          354 EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVE  433 (1043)
Q Consensus       354 ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe  433 (1043)
                      +|+..-..+.-....|....+.+.++..+|...+.|.++-+..|+.++........+|...-..|+.++.++..-.-++.
T Consensus       172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r  251 (420)
T COG4942         172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR  251 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            33333445555666677777778888888888888888888888877776666666666555555555555544333333


Q ss_pred             H
Q 001620          434 D  434 (1043)
Q Consensus       434 ~  434 (1043)
                      .
T Consensus       252 e  252 (420)
T COG4942         252 E  252 (420)
T ss_pred             H
Confidence            3

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.42  E-value=4.5  Score=51.32  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLR  424 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~e  424 (1043)
                      ..|++.++++.+----++++..++....+.|+.|+.-+..+++.|+..+.-+.........++..+.+..++
T Consensus       469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~  540 (980)
T KOG0980|consen  469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDR  540 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            556666777777777777888888888888888888888888888887665555554444444444444433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.39  E-value=0.95  Score=55.74  Aligned_cols=91  Identities=20%  Similarity=0.261  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR  253 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce  253 (1043)
                      ..-..+|+.|...|..+.++...+..++.++.+.+...+.....+++++.....-   ...+.|.++-..+++..+....
T Consensus       331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~---~~lL~d~e~ni~kL~~~v~~s~  407 (594)
T PF05667_consen  331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT---VELLPDAEENIAKLQALVEASE  407 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHH
Confidence            3444889999999999999999999999999999999999999998888865433   2235555555666666666666


Q ss_pred             HHHHHHHHHHHHHH
Q 001620          254 ETLTQMEEEQEKSA  267 (1043)
Q Consensus       254 EtL~eLEeere~s~  267 (1043)
                      ..+.+|..+-+..+
T Consensus       408 ~rl~~L~~qWe~~R  421 (594)
T PF05667_consen  408 QRLVELAQQWEKHR  421 (594)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666665544333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.39  E-value=0.76  Score=60.19  Aligned_cols=108  Identities=13%  Similarity=0.233  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHhHHhHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 001620          352 VTEMAEKIDEVVSKVVNLETSFSSQ--TALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN  429 (1043)
Q Consensus       352 V~ELaEkIdeLvnKV~sLE~~ISsq--ea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~  429 (1043)
                      +..+.+.++.+.+++..+...+..+  ......=+.++-.+..++++++.++..|........  .....++...++.-.
T Consensus       973 l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~ 1050 (1294)
T KOG0962|consen  973 LSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEER 1050 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence            3445555666666666666555433  334444455666677777777777776655554444  566667777888888


Q ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHhhcccC
Q 001620          430 RSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK  461 (1043)
Q Consensus       430 esVe~e~~~L~srftEa~~~L~eLseeL~s~~  461 (1043)
                      +.+..+.+-+....-+++..+..+..+|..+.
T Consensus      1051 ~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1051 EKLSSEKNLLLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            88888888888999999999999988887543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.35  E-value=1.5  Score=46.93  Aligned_cols=48  Identities=19%  Similarity=0.188  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620          245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI  292 (1043)
Q Consensus       245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~  292 (1043)
                      +..++..+...+..|+++-..+..+++.+......+..++.+|..+-.
T Consensus        65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~  112 (193)
T PF14662_consen   65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG  112 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444455554444444444444444444444444444433

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.33  E-value=3.8  Score=50.77  Aligned_cols=253  Identities=17%  Similarity=0.216  Sum_probs=141.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          186 QILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEK  265 (1043)
Q Consensus       186 eI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~  265 (1043)
                      .-..|..+.+.++..++.+...---|+..+.-+-+.+..+..+         .++.....-.+...--.-+.+|+..+-.
T Consensus       290 ~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e---------Ke~~~Ee~nk~k~~~s~~v~e~qtti~~  360 (786)
T PF05483_consen  290 EQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEE---------KEAQMEELNKAKAQHSFVVTELQTTICN  360 (786)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666666666666666666666333         2233333333333333444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhH---hhhhhh-------HHHHHHHH
Q 001620          266 SAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDV---VRTAQD-------REDLESLR  335 (1043)
Q Consensus       266 s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~---~~l~eE-------E~rLe~Ld  335 (1043)
                      +.+=+...-.|+...++.+..|..++.+--++++........ ..+ ++.+|...+   +.+-.+       ...++...
T Consensus       361 L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~-ke~-eleeL~~~L~e~qkll~ekk~~eki~E~lq~~e  438 (786)
T PF05483_consen  361 LKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNN-KEV-ELEELKKILAEKQKLLDEKKQFEKIAEELQGTE  438 (786)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666677777777777777777776554444321100000 000 011111110   011111       12222233


Q ss_pred             HHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhch
Q 001620          336 EKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETD-------ELQAQIRTLEDDKASLINDK  408 (1043)
Q Consensus       336 ~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~Ele-------ELqeklkeLEeEl~~Lk~dR  408 (1043)
                      ..|..++-.+   ...|-||...+-.+...-.       ...-+|+.|+.+++       +|-.....|.-+...|.-+.
T Consensus       439 qel~~llq~~---ekev~dLe~~l~~~~~~eq-------~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~  508 (786)
T PF05483_consen  439 QELTGLLQIR---EKEVHDLEIQLTTIKESEQ-------HYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQET  508 (786)
T ss_pred             HHHHHHHHhh---hhHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333332222   1123333333222222222       23445555555555       56677778888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620          409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI  459 (1043)
Q Consensus       409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s  459 (1043)
                      +.+.-.++.+.+.+..-.....++-.++.+|...-+.+...+..+..++.-
T Consensus       509 ~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~  559 (786)
T PF05483_consen  509 SDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQ  559 (786)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888888888889988888888888888777754

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.32  E-value=0.69  Score=49.39  Aligned_cols=95  Identities=16%  Similarity=0.168  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      +.+.+.|..+|..+.++..-...-..-+..++.+|..+.++|...|-..+..|......+.+...++.+|..=+.+++.=
T Consensus        94 EkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~  173 (193)
T PF14662_consen   94 EKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSI  173 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44555566666666665554545556677777777777777887777777777777777777777777777666666666


Q ss_pred             hHHHHHHHHHHHHHH
Q 001620          408 KKDLSSKLVEMEEKL  422 (1043)
Q Consensus       408 Re~L~ekLkElEeel  422 (1043)
                      ...|+-++..+++.+
T Consensus       174 teeLR~e~s~LEeql  188 (193)
T PF14662_consen  174 TEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666666554

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=2.6  Score=52.59  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHH
Q 001620          255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----RED  330 (1043)
Q Consensus       255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~r  330 (1043)
                      ++.+|...+..-.+..-.++.+...+.-++++|...+..|...+-+..+.         |-.....++.++..    ..+
T Consensus       417 r~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~---------~tt~kt~ie~~~~q~e~~ise  487 (1118)
T KOG1029|consen  417 RRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD---------ITTQKTEIEEVTKQRELMISE  487 (1118)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec---------cchHHHHHHHhhhHHHHHHHH
Confidence            33444444444444444455555555555555555555554433332211         11122233333322    444


Q ss_pred             HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 001620          331 LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTE-------TDELQAQIRTLEDDKAS  403 (1043)
Q Consensus       331 Le~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~E-------leELqeklkeLEeEl~~  403 (1043)
                      |..|..+|+|+...-.+.       +-+...|..++-.....-..-+.+...|+..       ...++.++.+|+.|...
T Consensus       488 i~qlqarikE~q~kl~~l-------~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~es  560 (1118)
T KOG1029|consen  488 IDQLQARIKELQEKLQKL-------APEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETES  560 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666777666544322       2222333333333322222222222233322       33344444555555555


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHH
Q 001620          404 LINDKKDLSSKLVEMEEKLLRLH  426 (1043)
Q Consensus       404 Lk~dRe~L~ekLkElEeel~evq  426 (1043)
                      -..+.+-++.+++++++.+...+
T Consensus       561 k~~eidi~n~qlkelk~~~~~q~  583 (1118)
T KOG1029|consen  561 KLNEIDIFNNQLKELKEDVNSQQ  583 (1118)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHH
Confidence            55555566667777776666554

>PF13514 AAA_27: AAA domain

Probab=96.25  E-value=3.6  Score=54.10  Aligned_cols=44  Identities=30%  Similarity=0.419  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHH------HHHHHHHhHHhHHHhh
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAE------KIDEVVSKVVNLETSF  373 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaE------kIdeLvnKV~sLE~~I  373 (1043)
                      ...+..+...|..++..-  ...+.+++.+      ++..+..++..++..+
T Consensus       821 ~~~l~~~~~~l~~L~~~a--~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l  870 (1111)
T PF13514_consen  821 EEELEELEAELAELLEQA--GVEDEEELREAEERAEERRELREELEDLERQL  870 (1111)
T ss_pred             HHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777777777776633  2233444444      3444445555555554

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.24  E-value=0.73  Score=54.55  Aligned_cols=58  Identities=12%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620          355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS  412 (1043)
Q Consensus       355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~  412 (1043)
                      +.+.|..-.||-+.|+..|...+..|.+|...+..+..++-..-.++.++++..+...
T Consensus       471 i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~  528 (622)
T COG5185         471 IQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENEREL  528 (622)
T ss_pred             HHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3445566678888899999999999999999999999998888888888887776655

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.23  E-value=0.73  Score=52.70  Aligned_cols=105  Identities=17%  Similarity=0.252  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001620          179 EIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQ  258 (1043)
Q Consensus       179 EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~e  258 (1043)
                      -|..|..++..-+.|++-.+.-.+++..++..+++...++.-...+.-+- +..            ....-.++-..|.+
T Consensus        10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~-~~~------------~~~~~~~La~lL~~   76 (319)
T PF09789_consen   10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDP-SIP------------PEKENKNLAQLLSE   76 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCc-cCC------------cccchhhHHHHHHH
Confidence            37788899999999999999999999999999999887766443333211 000            00012223334445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620          259 MEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEG  296 (1043)
Q Consensus       259 LEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEa  296 (1043)
                      ..+.-..+..+...+..++.+|...++-|+..+.....
T Consensus        77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~  114 (319)
T PF09789_consen   77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV  114 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence            55555555555556666666666666666665555433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.20  E-value=1.7  Score=56.05  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=39.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          189 TLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQME  260 (1043)
Q Consensus       189 ~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLE  260 (1043)
                      .++++....+.+.++.+..+.+.+.+-+++|.....+         ++...+-...++..++.++..|.++.
T Consensus      1419 ~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~---------~~~a~as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1419 DADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA---------LEQANASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666777777888888888888888888777776         33233444444445554444444444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.18  E-value=1.1  Score=60.15  Aligned_cols=48  Identities=13%  Similarity=0.251  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620          247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN  294 (1043)
Q Consensus       247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L  294 (1043)
                      ..+...-..+..-.........++....+++..+...+...+.++...
T Consensus       786 ~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~a  833 (1353)
T TIGR02680       786 RSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERD  833 (1353)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444445555555555555555555555555555555433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.11  E-value=3.9  Score=50.63  Aligned_cols=62  Identities=13%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccCc
Q 001620          401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKT  462 (1043)
Q Consensus       401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~~  462 (1043)
                      +..|+.+...|+..+.....+....+.-+...+.++.+++.+...+.-.+..++.+..+.+.
T Consensus       706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq  767 (961)
T KOG4673|consen  706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQ  767 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44566777777788888888888888888899999999999999999999998776665443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.04  E-value=6.6  Score=49.54  Aligned_cols=99  Identities=22%  Similarity=0.304  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHhhhhccchHHHHHHHHHhhhhhhccCCCCCccccccCCCCCCCcccchhhhccCCCCCCCChhHHHHhh
Q 001620          734 NDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATSTRPTDREVEVVVIHGEQPQPTSETEEKFRM  813 (1043)
Q Consensus       734 ~~e~~~~irELk~an~~Kd~eI~sLr~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~S~~EeKfR~  813 (1043)
                      ..++.-||=.||+-.++|-++|--||-.|-.-..-..-.     -++            +|..-=.+....+..=.|||.
T Consensus       585 ~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvA-----Lan------------LKsKYE~EK~~v~etm~kLRn  647 (717)
T PF09730_consen  585 KEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVA-----LAN------------LKSKYENEKAMVSETMMKLRN  647 (717)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH------------HHHHHhhhhhhHHHHHHHHHH
Confidence            456677899999999999999999998876532211000     000            000000001113455579999


Q ss_pred             hHHHHHHHhHHHH-HH--hhhhhhHHHhhhhhHHHHHHHHhh
Q 001620          814 DIDELLEENLDFW-LR--FSASFHQIQKFDTEVKDLKNDISK  852 (1043)
Q Consensus       814 ~ID~lLEENL~Fw-lr--FSts~hqiQkFqt~~~dLq~el~k  852 (1043)
                      +.=+|=|.==.|= ||  |.+   +-..|.|.+++||..|.-
T Consensus       648 ELK~LKEDAATFsSlRamFa~---RCdEYvtQldemqrqL~a  686 (717)
T PF09730_consen  648 ELKALKEDAATFSSLRAMFAA---RCDEYVTQLDEMQRQLAA  686 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            9999999988884 33  555   456799999999999986

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.04  E-value=0.82  Score=52.12  Aligned_cols=64  Identities=20%  Similarity=0.293  Sum_probs=52.5

Q ss_pred             HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 001620          363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLH  426 (1043)
Q Consensus       363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq  426 (1043)
                      ..++..+..++..+...|+.++.++++++.++..+...+..+......+..+|.+++..+...+
T Consensus       208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r  271 (325)
T PF08317_consen  208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR  271 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3566777788888888888888888888888888888888888888888888888887776553

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.02  E-value=6  Score=51.05  Aligned_cols=7  Identities=43%  Similarity=0.078  Sum_probs=2.6

Q ss_pred             hhhcccc
Q 001620          909 RCSSLSN  915 (1043)
Q Consensus       909 R~~sLc~  915 (1043)
                      +|+.+-.
T Consensus       776 ~l~~~~~  782 (908)
T COG0419         776 ILSKLSL  782 (908)
T ss_pred             HHHHHhc
Confidence            3333333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.98  E-value=0.0018  Score=80.21  Aligned_cols=58  Identities=26%  Similarity=0.448  Sum_probs=0.0

Q ss_pred             HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Q 001620          361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEM  418 (1043)
Q Consensus       361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkEl  418 (1043)
                      .+...++.+........+.+..+..++..+...+..|+.++..|.....++...+..+
T Consensus       340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~  397 (722)
T PF05557_consen  340 DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEAL  397 (722)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555555555555555555555554444444444444433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.93  E-value=0.32  Score=49.61  Aligned_cols=123  Identities=21%  Similarity=0.228  Sum_probs=84.6

Q ss_pred             HHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 001620          336 EKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKL  415 (1043)
Q Consensus       336 ~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekL  415 (1043)
                      .++++-.-...+....|.-|...++..+...-.+........+.|..|..++..+...++.|+.++..|+.++..|...+
T Consensus        10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444455555566666667777777777788888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          416 VEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       416 kElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      ..+..++.++..++.++..-+..+......+......-..+|+
T Consensus        90 q~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~  132 (140)
T PF10473_consen   90 QKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQ  132 (140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888777777766665555554444444444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.92  E-value=2.8  Score=47.86  Aligned_cols=103  Identities=19%  Similarity=0.273  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRS  431 (1043)
Q Consensus       352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~es  431 (1043)
                      |.|.......+-..|+.|...++..++...+...+|..|..++-.|+..+..+..+.++|...|....+-...+..-+..
T Consensus       201 v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~e  280 (306)
T PF04849_consen  201 VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQE  280 (306)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666777778888888888888888888888888888888888888888888888888887777766666555555


Q ss_pred             HHHHHhhHHHHHHHHHHhHHHHH
Q 001620          432 VEDQNYSFQTHLTEARYNIDHLS  454 (1043)
Q Consensus       432 Ve~e~~~L~srftEa~~~L~eLs  454 (1043)
                      ++.+-.-...-+.++..++..++
T Consensus       281 lqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  281 LQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            55554444444555555554443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.89  E-value=9.9  Score=50.28  Aligned_cols=202  Identities=10%  Similarity=0.099  Sum_probs=109.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcc
Q 001620          234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEE  313 (1043)
Q Consensus       234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSe  313 (1043)
                      ...+.+.+...+..++...++.+.............+...-..+.++...+..++..+......-..  +..      +.
T Consensus       103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~--l~~------a~  174 (1109)
T PRK10929        103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTP--LAQ------AQ  174 (1109)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCc--ccH------HH
Confidence            3455555555555555555555555555554444444444444477888888888777554222111  110      00


Q ss_pred             cccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001620          314 SDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ  393 (1043)
Q Consensus       314 IpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqek  393 (1043)
                      .-.+          ..+...+..++..+..+-..++.+.+=..-+.|-+.-++.-++..+...++.|++.|.+-.+...+
T Consensus       175 ~~~l----------qae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~  244 (1109)
T PRK10929        175 LTAL----------QAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALE  244 (1109)
T ss_pred             HHHH----------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011          222333444444444443344444444455555556666666666666666666655544444222


Q ss_pred             HHHHH-H-------HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          394 IRTLE-D-------DKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       394 lkeLE-e-------El~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      ..+.. +       .+..+-+.+..|..+|...-++.+.+......+..+...+...+..+...|+-|
T Consensus       245 ~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l  312 (1109)
T PRK10929        245 STELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL  312 (1109)
T ss_pred             HHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22211 1       133333557777788888888888887777777777777777777666666544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=1  Score=56.38  Aligned_cols=203  Identities=12%  Similarity=0.104  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhh
Q 001620          241 RTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDID  320 (1043)
Q Consensus       241 Ral~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee  320 (1043)
                      -+..+..++.+|......|+-+.+.+.+++.........+.+.+..|+.+++....-..+    +  ++.....+-.+++
T Consensus       665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~----~--~q~~e~~~t~~ee  738 (970)
T KOG0946|consen  665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRD----L--LQGAEASKTQNEE  738 (970)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh----H--HhHHHhccCChHH
Confidence            344455677888888888888999999999988888888999999999888754322211    0  1111222222233


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHhcCCCccc-------cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHH
Q 001620          321 VVRTAQDREDLESLREKIKEQLEFGSSGSL-------TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ  393 (1043)
Q Consensus       321 ~~~l~eEE~rLe~Ld~kInEl~eeke~a~l-------sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqek  393 (1043)
                                +..+..+.+.++-..+++..       .+..+...+..+.+..-++-.....++ +|-++..++.++..+
T Consensus       739 ----------l~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qe-qv~El~~~l~e~~~~  807 (970)
T KOG0946|consen  739 ----------LNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQE-QVIELLKNLSEESTR  807 (970)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHH-HHHHHHHhhhhhhhH
Confidence                      33333333333322221211       223333333434444444444444443 444444448888888


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          394 IRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL-------NRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       394 lkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l-------~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      +.+++.++..++.+...+..++.++-..+.++...       ...++.++.+++.++......|..+.+++.|.
T Consensus       808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl  881 (970)
T KOG0946|consen  808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL  881 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence            88888888888888888888877777777665443       33444444445555544444555555554443

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=95.82  E-value=6.6  Score=47.66  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 001620          352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDE----LQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHD  427 (1043)
Q Consensus       352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleE----LqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~  427 (1043)
                      ..+|..+.+.+.+.+..|+..|.....++..++..+..    ++...++++.-+..+...       -.+++--..++..
T Consensus       276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~e~~l~~~el~~  348 (511)
T PF09787_consen  276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-------EAELRLYYQELYH  348 (511)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHH
Confidence            56667777777777777766666555555555444333    222223333322222222       2222233334444


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620          428 LNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI  459 (1043)
Q Consensus       428 l~esVe~e~~~L~srftEa~~~L~eLseeL~s  459 (1043)
                      ..+.+..+.+.+..+..+-..+|.-|...|.+
T Consensus       349 ~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~  380 (511)
T PF09787_consen  349 YREELSRQKSPLQLKLKEKESEIQKLRNQLSA  380 (511)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666677777677777777666654

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.79  E-value=1.7  Score=46.73  Aligned_cols=48  Identities=17%  Similarity=0.313  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620          245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI  292 (1043)
Q Consensus       245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~  292 (1043)
                      .+..++.+..+.-++++++..+..+++...-...++..+.+..-..+.
T Consensus        44 ~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~   91 (205)
T KOG1003|consen   44 SERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLV   91 (205)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666666666665555555555555555544443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.78  E-value=2  Score=52.68  Aligned_cols=56  Identities=18%  Similarity=0.364  Sum_probs=35.7

Q ss_pred             hHHHHhHHHHHHHHHHHHHHhhh-------cCChHHHHHHHhhccchHH-HHHHHHHHHHHHHH
Q 001620           24 KWLEQNLQDLEEKVAYTLKLIEE-------DGDSFAKRAEMYYKKRPEL-ISFVEEAYRAYRAL   79 (1043)
Q Consensus        24 ~wL~~~l~dmd~kvk~~l~li~e-------d~dsfakraemyy~kRpeL-i~~vee~~r~Yr~L   79 (1043)
                      -|....|..+...+.+-..-|..       .-+.|+.+-.-|-+.=|+. ..+|--+-.+|++=
T Consensus        11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~E   74 (629)
T KOG0963|consen   11 YWKRFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSE   74 (629)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            48888888777777766666653       2356777777566666654 34555555666653

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.73  E-value=2.4  Score=47.52  Aligned_cols=178  Identities=15%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          208 YWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESL  287 (1043)
Q Consensus       208 l~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesL  287 (1043)
                      |..-...++++++++..+|.+                    |.++...|.++..++.....+++.+...|..+..+|+.+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~e--------------------i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~   92 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNE--------------------IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL   92 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666777777777777766555                    334455555555555555555555555555555555555


Q ss_pred             HHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHH------HHHHHHhcCCCccccHHHHHHHHHH
Q 001620          288 KHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLRE------KIKEQLEFGSSGSLTVTEMAEKIDE  361 (1043)
Q Consensus       288 k~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~------kInEl~eeke~a~lsV~ELaEkIde  361 (1043)
                      +..|..-..                   .|          ..|++.+..      =|.-++..+     ++.|+-.++. 
T Consensus        93 ~~~I~~r~~-------------------~l----------~~raRAmq~nG~~t~Yidvil~Sk-----SfsD~IsRvt-  137 (265)
T COG3883          93 KENIVERQE-------------------LL----------KKRARAMQVNGTATSYIDVILNSK-----SFSDLISRVT-  137 (265)
T ss_pred             HHHHHHHHH-------------------HH----------HHHHHHHHHcCChhHHHHHHHccC-----cHHHHHHHHH-
Confidence            555531110                   01          223333221      133344433     4455554443 


Q ss_pred             HHHhHHhHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001620          362 VVSKVVNLETSF-SSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQ  440 (1043)
Q Consensus       362 LvnKV~sLE~~I-Ssqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~  440 (1043)
                      +++.|++....| ..+.+.=.+|+..=..+..++.+|..-..+|......|..+..+...-+..+.......+.+...|.
T Consensus       138 Ai~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~  217 (265)
T COG3883         138 AISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE  217 (265)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            244555554443 2333333444444444444444444444444444555555555555555555555555554444444

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.73  E-value=5.1  Score=47.84  Aligned_cols=59  Identities=22%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          397 LEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       397 LEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      ||+....+..+..+|...+.-++.++..+-....-....+.....++.   .+++-|..+|+
T Consensus       485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~---~E~eklE~el~  543 (622)
T COG5185         485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQR---IEIEKLEKELN  543 (622)
T ss_pred             HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHH
Confidence            555555566666666666666666666665555555555555544444   44555555554

>KOG3958 consensus Putative dynamitin [Cytoskeleton]

Probab=95.71  E-value=5  Score=45.55  Aligned_cols=135  Identities=17%  Similarity=0.183  Sum_probs=101.8

Q ss_pred             cccchhhHhhhh-----hhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHH
Q 001620          314 SDRSDIDVVRTA-----QDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETD  388 (1043)
Q Consensus       314 IpeLeee~~~l~-----eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~Ele  388 (1043)
                      +..|...++-++     .-|.|++.+-+++++.-+... ++.-=++...+|++|-+-+.--+--.+..=..|+||.. |.
T Consensus       230 Ve~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~-~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~a-l~  307 (371)
T KOG3958|consen  230 VELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHK-ASVEDADTDSKVHELYETIQRWSPIASTLPELVQRLVA-LK  307 (371)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHH-HH
Confidence            334555554443     449999999999999765443 66666788899999999999999999999999999974 88


Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          389 ELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       389 ELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      .|++....+-.=+..|..-+..+-..+..=.+-+-.+|..   +...+.++...|.-+...+..|
T Consensus       308 ~LHeqa~~Fa~~lthl~t~q~~i~~sl~~n~ell~~vqtt---~~qnl~tV~~k~a~ie~rva~l  369 (371)
T KOG3958|consen  308 QLHEQAMQFAQLLTHLDTTQQMIANSLKDNTELLTQVQTT---MRQNLATVEGKFASIEERVAKL  369 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999998888888888888888777777777666553   3445556666666665555544

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.69  E-value=0.096  Score=65.33  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=17.7

Q ss_pred             HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHH
Q 001620          356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDE  389 (1043)
Q Consensus       356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleE  389 (1043)
                      .+++..|..++.+|+..+......+..|..+|+.
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.62  E-value=4.2  Score=53.73  Aligned_cols=78  Identities=21%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          201 YENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDA  280 (1043)
Q Consensus       201 yq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~ea  280 (1043)
                      ....++++..++.++.++++.+..+-.+      +.+..++..-....+....+...++..++......+......|.+.
T Consensus       873 ~~~~l~~~~qle~~~~~l~e~~~~~~s~------~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~  946 (1294)
T KOG0962|consen  873 IERSLARLQQLEEDIEELSEEITRLDSK------VKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEK  946 (1294)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444333      3444444444444444444444444444433333333333444433


Q ss_pred             HHHH
Q 001620          281 RDKF  284 (1043)
Q Consensus       281 E~el  284 (1043)
                      ...+
T Consensus       947 ~s~l  950 (1294)
T KOG0962|consen  947 VSLL  950 (1294)
T ss_pred             HHHH
Confidence            3333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.57  E-value=3.5  Score=44.24  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001620          385 TETDELQAQIRTLEDDKASLINDKKDLSSKLVEME  419 (1043)
Q Consensus       385 ~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElE  419 (1043)
                      ..+.....+..++..++..|..+...|..+|++.+
T Consensus       157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444555555555555555555554443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.56  E-value=3.8  Score=52.00  Aligned_cols=117  Identities=23%  Similarity=0.291  Sum_probs=85.2

Q ss_pred             ccccHHHHHHHHHHHHHhHHhHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001620          348 GSLTVTEMAEKIDEVVSKVVNLETSFSSQ-------TALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE  420 (1043)
Q Consensus       348 a~lsV~ELaEkIdeLvnKV~sLE~~ISsq-------ea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEe  420 (1043)
                      ++..+.+|..++..+.+....++..+...       ..+...++.|+..++.++..|+.++..-+....++..+..++++
T Consensus       629 ~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~  708 (769)
T PF05911_consen  629 SEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEE  708 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence            33455666666666666666555555444       33344456778888889999999988888888888888999999


Q ss_pred             HHHHHHHHHHHH-----------HHHHhhHHHHHHHHHHhHHHHHHhhcccCchh
Q 001620          421 KLLRLHDLNRSV-----------EDQNYSFQTHLTEARYNIDHLSHKLKIQKTDE  464 (1043)
Q Consensus       421 el~evq~l~esV-----------e~e~~~L~srftEa~~~L~eLseeL~s~~~~~  464 (1043)
                      ++.+........           +.++.+--..+++....|..|..+|++..|-.
T Consensus       709 el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa~~~  763 (769)
T PF05911_consen  709 ELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLATPE  763 (769)
T ss_pred             HHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            888887554322           33666777889999999999999999976543

The function of this family is unknown.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.50  E-value=2.6  Score=50.16  Aligned_cols=92  Identities=18%  Similarity=0.172  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFS-------SQTALVQRLRTETDELQAQIRTLEDD  400 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~IS-------sqea~IerLr~EleELqeklkeLEeE  400 (1043)
                      ..++..++.++.++...-....-.|.++..+|+.+...+......+.       ..+.....|...+...+..+..+...
T Consensus       253 ~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~  332 (498)
T TIGR03007       253 DGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEAR  332 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555432111122444555555555554433322110       01122344555555555555555555


Q ss_pred             HHHhhhchHHHHHHHHHHH
Q 001620          401 KASLINDKKDLSSKLVEME  419 (1043)
Q Consensus       401 l~~Lk~dRe~L~ekLkElE  419 (1043)
                      +..|......++.++..+-
T Consensus       333 ~~~l~~~~~~~~~~~~~~~  351 (498)
T TIGR03007       333 VAELTARIERLESLLRTIP  351 (498)
T ss_pred             HHHHHHHHHHHHHHHHhch
Confidence            5555555555555544433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.87  Score=54.77  Aligned_cols=89  Identities=19%  Similarity=0.318  Sum_probs=59.2

Q ss_pred             HHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          358 KIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNY  437 (1043)
Q Consensus       358 kIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~  437 (1043)
                      +=..++-+|..|+.........+.+-+.|++.+......+-+..+.+..+|-.|+.+|++...+-.++=.-...++.++.
T Consensus       101 kE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENI  180 (772)
T KOG0999|consen  101 KEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENI  180 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34556667777777777777777777777777777777777777777777777777777666665555555555666655


Q ss_pred             hHHHHHHHH
Q 001620          438 SFQTHLTEA  446 (1043)
Q Consensus       438 ~L~srftEa  446 (1043)
                      +|+...+.+
T Consensus       181 sLQKqVs~L  189 (772)
T KOG0999|consen  181 SLQKQVSNL  189 (772)
T ss_pred             hHHHHHHHH
Confidence            555544433

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=95.50  E-value=1.8  Score=54.21  Aligned_cols=49  Identities=22%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH------HHHHHHHHHHhhcccc
Q 001620          247 AALKSCRETLTQMEEEQE---------KSAEEAKIERKRIKD------ARDKFESLKHEFIGNE  295 (1043)
Q Consensus       247 ~aIksceEtL~eLEeere---------~s~eEa~~l~eRI~e------aE~elesLk~el~~LE  295 (1043)
                      -.+-++++.+.-|.+...         .+..==++++++|.+      ..++++.++.++.+.-
T Consensus       528 ~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g  591 (762)
T PLN03229        528 PNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSG  591 (762)
T ss_pred             cccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence            344455566666665554         122224567778888      8899999999887753

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.43  E-value=0.73  Score=52.51  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          249 LKSCRETLTQMEEEQEKSAEEAKIERKRIKDARD  282 (1043)
Q Consensus       249 IksceEtL~eLEeere~s~eEa~~l~eRI~eaE~  282 (1043)
                      .+-.++-+..|++....+..+...+.+.+..+..
T Consensus       144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~  177 (325)
T PF08317_consen  144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDE  177 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444443333

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.39  E-value=4.5  Score=52.06  Aligned_cols=181  Identities=17%  Similarity=0.298  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHH-----HHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAA-----AALKSC  252 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE-----~aIksc  252 (1043)
                      .++..--.++-.|+.+...+...+..+.+.+--|+.++..+.++|.++.++       +....++.+.+     ..++--
T Consensus       174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer-------~~~~~~Ie~l~~k~~~v~y~~~  246 (1072)
T KOG0979|consen  174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER-------ERKKSKIELLEKKKKWVEYKKH  246 (1072)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccchHhh
Confidence            567777788889999999999999999999999999999999999998655       22233344443     233444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHH
Q 001620          253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLE  332 (1043)
Q Consensus       253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe  332 (1043)
                      ......+......+..+.+.+.+.+...+.+.+.|+.+...                       +..+++.+   -..+.
T Consensus       247 ~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~e-----------------------t~~~~s~~---~~~~~  300 (1072)
T KOG0979|consen  247 DREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKE-----------------------TRSKISQK---QRELN  300 (1072)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHh-----------------------HHHHHHHH---HHHHH
Confidence            44444555555555555555555555555555555543221                       11121111   33345


Q ss_pred             HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          333 SLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE  398 (1043)
Q Consensus       333 ~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE  398 (1043)
                      ....++.+.++.       +.++..++..+.++..++..+-...++.|.+.+..|..++..+.+.+
T Consensus       301 e~~~k~~~~~ek-------~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~  359 (1072)
T KOG0979|consen  301 EALAKVQEKFEK-------LKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE  359 (1072)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            555556665553       36777888888888888888888888888888888888888877654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=11  Score=47.28  Aligned_cols=204  Identities=13%  Similarity=0.117  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhh-cccccchhh
Q 001620          244 MAAAALKSCRETLTQMEEEQEKSAE--EAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAV-EESDRSDID  320 (1043)
Q Consensus       244 ~aE~aIksceEtL~eLEeere~s~e--Ea~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~i-SeIpeLeee  320 (1043)
                      ++.+++.+|...+..+.+....-..  ..+....+|......++.|+..+.....-+..       ++++ +.+.+..++
T Consensus       397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e-------~~t~gsA~ed~Qeq  469 (698)
T KOG0978|consen  397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSE-------METIGSAFEDMQEQ  469 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            5667777777777766654433222  33444444555555555554444332210000       0111 223333333


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          321 VVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD  400 (1043)
Q Consensus       321 ~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE  400 (1043)
                      +.++-++   ++.-+.+=-.++-++..+...+.-|.+..+-+...|..+-..+.-+...|..|+.....+...+..+..+
T Consensus       470 n~kL~~e---l~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~e  546 (698)
T KOG0978|consen  470 NQKLLQE---LREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKE  546 (698)
T ss_pred             HHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH
Confidence            3333222   1112222222233333333444455555555556666666666666666666666666666666666666


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      +..+...-+.++....++...+.-++......+.++..++....++..+|+.+..+.
T Consensus       547 l~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~  603 (698)
T KOG0978|consen  547 LTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKR  603 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666665443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.29  E-value=0.082  Score=55.83  Aligned_cols=109  Identities=21%  Similarity=0.322  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      +..+-.+..++.++...+       .+++.++-.+..++..++..+......|..|..++..|+.++..+++++.++...
T Consensus        73 e~~~~~l~~ELael~r~~-------~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~  145 (194)
T PF08614_consen   73 EQKLAKLQEELAELYRSK-------GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA  145 (194)
T ss_dssp             ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccc-------ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666665555       4445555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620          408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL  443 (1043)
Q Consensus       408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srf  443 (1043)
                      .+.|++++..+.-.+.-+......++.++..|-.|.
T Consensus       146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  146 NEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.26  E-value=11  Score=46.57  Aligned_cols=67  Identities=19%  Similarity=0.177  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHH
Q 001620          254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDL  331 (1043)
Q Consensus       254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rL  331 (1043)
                      +...-..++...+-.++..-..||..|+.+++.|+..+..-......           .++|.++.....+..-+..|
T Consensus       228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~-----------~~~~~i~~~~~~L~~kd~~i  294 (629)
T KOG0963|consen  228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL-----------AKIDDIDALGSVLNQKDSEI  294 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----------ccCCchHHHHHHHhHHHHHH
Confidence            44555556667777777788888888888888888888655443333           45666665544444433333

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.17  E-value=1.6  Score=55.78  Aligned_cols=177  Identities=15%  Similarity=0.165  Sum_probs=83.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhccc
Q 001620          235 IEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEES  314 (1043)
Q Consensus       235 IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeI  314 (1043)
                      +.+..++.-.++..+.+|.++|..|+..+....-++..+.+|- ....+|+-|....         +.+.|..       
T Consensus       183 L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~~k~---------~~v~y~~-------  245 (1072)
T KOG0979|consen  183 LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLEKKK---------KWVEYKK-------  245 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc---------cccchHh-------
Confidence            3344455555666666777777776666666655555555442 2233333333222         1111211       


Q ss_pred             ccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 001620          315 DRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQI  394 (1043)
Q Consensus       315 peLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqekl  394 (1043)
                        -+.+.   ++......-+...+..+.++.........+|...+++.-+++..+-..+-.+.+.+...-..+.+.+.++
T Consensus       246 --~~~ey---~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v  320 (1072)
T KOG0979|consen  246 --HDREY---NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEV  320 (1072)
T ss_pred             --hhHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01111   1112223333344444444333233333444444444444444444444444444444444555555555


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          395 RTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVE  433 (1043)
Q Consensus       395 keLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe  433 (1043)
                      ..+...+..|+......+..+..+.+.+...|+..+.++
T Consensus       321 ~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~  359 (1072)
T KOG0979|consen  321 EEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE  359 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            555555555555555555666666666666665555443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.15  E-value=2.7  Score=53.31  Aligned_cols=83  Identities=18%  Similarity=0.224  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          210 DIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKH  289 (1043)
Q Consensus       210 eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~  289 (1043)
                      +.++...+++.++..+..+      +....+....+..+|......|.+|.+....+..++..+..|++-++.+...|+-
T Consensus        82 e~e~~~~~le~~l~e~~~~------l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky  155 (769)
T PF05911_consen   82 EWEKIKSELEAKLAELSKR------LAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY  155 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445555554444      3344444445556788888899999999999999999999999999999999998


Q ss_pred             hhccccCCC
Q 001620          290 EFIGNEGSK  298 (1043)
Q Consensus       290 el~~LEaek  298 (1043)
                      ++.-+..++
T Consensus       156 e~~~~~kel  164 (769)
T PF05911_consen  156 ELHVLSKEL  164 (769)
T ss_pred             HHHHHHHHH
Confidence            887665544

The function of this family is unknown.

>PRK09039 hypothetical protein; Validated

Probab=95.12  E-value=0.46  Score=54.68  Aligned_cols=10  Identities=40%  Similarity=0.657  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q 001620          331 LESLREKIKE  340 (1043)
Q Consensus       331 Le~Ld~kInE  340 (1043)
                      |..|..+|++
T Consensus        55 L~~L~~qIa~   64 (343)
T PRK09039         55 LDRLNSQIAE   64 (343)
T ss_pred             HHHHHHHHHH
Confidence            3344444433

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.04  E-value=2.5  Score=52.33  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .++++..+...-|-...+++..+.+...+++...+....+.++.+..+-.+                ++..+-.....+.
T Consensus        98 ~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e----------------~~~k~ae~~~lr~  161 (716)
T KOG4593|consen   98 AEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLRE----------------KEDKLAELGTLRN  161 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
Confidence            455555555444444445555555555555544444444444443333222                2222233333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      ++......+..++.-...++..+...+..+++++
T Consensus       162 k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~  195 (716)
T KOG4593|consen  162 KLDSSLSELQWEVMLQEMRAKRLHSELQNEEKEL  195 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444555555555555544444

>TIGR00634 recN DNA repair protein RecN

Probab=94.93  E-value=4.9  Score=49.13  Aligned_cols=18  Identities=11%  Similarity=0.152  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHhcC
Q 001620          328 REDLESLREKIKEQLEFG  345 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eek  345 (1043)
                      ...++++...|..+...-
T Consensus       279 ~~~l~d~~~~l~~~~~~l  296 (563)
T TIGR00634       279 LTEVEEATRELQNYLDEL  296 (563)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            445555555555554433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=94.86  E-value=1.7  Score=46.44  Aligned_cols=112  Identities=12%  Similarity=0.183  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh-hHHHHHHHHHHHHHHHHHHHHHH
Q 001620          181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE-DEEARTLMAAAALKSCRETLTQM  259 (1043)
Q Consensus       181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE-D~eARal~aE~aIksceEtL~eL  259 (1043)
                      ..|.-.|..++.....++..+-.+......++.++.++...+..++....  ..+. ..+.-+..+-..+..|+..+..|
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~--~Al~~g~edLAr~al~~k~~~e~~~~~l  103 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE--LALAAGREDLAREALQRKADLEEQAERL  103 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666667777777777777777777777777777766521  1111 12233444556778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620          260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN  294 (1043)
Q Consensus       260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el~~L  294 (1043)
                      +............+...|..++.++..++.....+
T Consensus       104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l  138 (221)
T PF04012_consen  104 EQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL  138 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888777544

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.83  E-value=8  Score=42.77  Aligned_cols=99  Identities=17%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      ..+..|-..|..+..+.......+.....++..++..+..+..++..|+.+             +.++       .....
T Consensus        17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k-------------~~~~-------~~~~~   76 (264)
T PF06008_consen   17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEK-------------ATKV-------SRKAQ   76 (264)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH-------HHHHH
Confidence            444455555555555555555555555555555555555554444444333             2222       23333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEG  296 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEa  296 (1043)
                      .+...-......+..+...|..+...|..|-..+..+..
T Consensus        77 ~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~  115 (264)
T PF06008_consen   77 QLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE  115 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            445555555566666666666666666666666655533

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.77  E-value=0.22  Score=52.64  Aligned_cols=41  Identities=22%  Similarity=0.321  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          413 SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       413 ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      .++..++.++.+....++.+.+++.+|+.+|..++..+..|
T Consensus       130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l  170 (194)
T PF08614_consen  130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL  170 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.75  E-value=9.4  Score=44.83  Aligned_cols=84  Identities=14%  Similarity=0.176  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYEN-------WLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALK  250 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~-------~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIk  250 (1043)
                      .|+...+.++...++|++++.++++.       +..++..++.....+|.+...++..      -.+...|...+.+++.
T Consensus        88 tel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q------~q~lqtrl~~l~~qr~  161 (499)
T COG4372          88 TELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQ------AQDLQTRLKTLAEQRR  161 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence            55566666666666666666555543       3444555555555555555555443      2333333333334444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 001620          251 SCRETLTQMEEEQEKSA  267 (1043)
Q Consensus       251 sceEtL~eLEeere~s~  267 (1043)
                      ++.+..-.|...++.+.
T Consensus       162 ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         162 QLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444443333

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=94.67  E-value=4.3  Score=51.01  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHH------------HHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          205 LAKYWDIEEQIKELQ------------QRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKS  266 (1043)
Q Consensus       205 lekl~eLE~qISeaQ------------eeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s  266 (1043)
                      ..++..|+.+|+.+.            +.|..|.++|+          +.+-.+..+..++++|..|.++...+
T Consensus       435 e~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d----------~e~S~A~~~~gLk~kL~~Lr~E~sKa  498 (762)
T PLN03229        435 EGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEID----------LEYTEAVIAMGLQERLENLREEFSKA  498 (762)
T ss_pred             HHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHH----------HHHHHhhhhhhHHHHHHHHHHHHHhc
Confidence            345555555555553            45555555532          44555567777778888887777665

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=94.62  E-value=20  Score=47.36  Aligned_cols=7  Identities=0%  Similarity=0.036  Sum_probs=3.6

Q ss_pred             CCCCCCC
Q 001620          108 MDDDDED  114 (1043)
Q Consensus       108 ~~ddd~~  114 (1043)
                      +.++++.
T Consensus       500 L~~GePC  506 (1047)
T PRK10246        500 LQAGQPC  506 (1047)
T ss_pred             CCCCCCc
Confidence            4555454

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.57  E-value=19  Score=46.03  Aligned_cols=54  Identities=19%  Similarity=0.276  Sum_probs=26.7

Q ss_pred             HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 001620          361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSK  414 (1043)
Q Consensus       361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ek  414 (1043)
                      ...+.+.+|...+.....+-.+++...++..+.+..++.|++.|-.+-..|+..
T Consensus       463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555555555555555555555555444444444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.50  E-value=3.2  Score=44.59  Aligned_cols=105  Identities=15%  Similarity=0.236  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLT  257 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~  257 (1043)
                      .-|..|+++|+.+...-.........+......|..-+..++.++..|+..      +.    .-..-...+.....++.
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~------L~----~y~kdK~~L~~~k~rl~   96 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ------LK----NYEKDKQSLQNLKARLK   96 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHH
Confidence            667777777777777666666666666666666666677777777776655      32    33344557777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI  292 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~  292 (1043)
                      .++.++..+.-+...+..|+..++.+...|...|.
T Consensus        97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~  131 (201)
T PF13851_consen   97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE  131 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888999999999999999999988885

>TIGR00634 recN DNA repair protein RecN

Probab=94.35  E-value=4.9  Score=49.10  Aligned_cols=72  Identities=14%  Similarity=0.214  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          386 ETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL---NRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       386 EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l---~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      .+++++.++..+..-+.-...+.+++...+.+++.++..+...   ...++.++..++.++..+...|...+.+.
T Consensus       302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~  376 (563)
T TIGR00634       302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA  376 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555544444446777777777777777766553   44445555555555555555555554433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.27  E-value=6.6  Score=46.01  Aligned_cols=52  Identities=13%  Similarity=0.245  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL  404 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L  404 (1043)
                      ...+-+|.+...+|..+...|+.-.++|..-.+.+-+|+....-||.+.+.|
T Consensus       227 Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~l  278 (499)
T COG4372         227 QQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL  278 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555544444444444444433

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.20  E-value=3.3  Score=48.88  Aligned_cols=69  Identities=20%  Similarity=0.374  Sum_probs=40.8

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001620          369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHL  443 (1043)
Q Consensus       369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srf  443 (1043)
                      .+..-.+-++.|+.|+.+++-++...-.    ++.-...|+.  .+..+++.++.+++--+..+..|+..|+...
T Consensus       365 fq~ekeatqELieelrkelehlr~~kl~----~a~p~rgrsS--aRe~eleqevkrLrq~nr~l~eqneelngti  433 (502)
T KOG0982|consen  365 FQEEKEATQELIEELRKELEHLRRRKLV----LANPVRGRSS--AREIELEQEVKRLRQPNRILSEQNEELNGTI  433 (502)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH----hhccccCchh--HHHHHHHHHHHHhccccchhhhhhhhhhhhh
Confidence            5555566677777777777666544333    2323333333  5566667777777666666666666555443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.20  E-value=10  Score=43.45  Aligned_cols=19  Identities=21%  Similarity=0.393  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHhhHH
Q 001620          177 LKEIDKLQKQILTLQTDKE  195 (1043)
Q Consensus       177 e~EIerLqkeI~~LQtEKE  195 (1043)
                      ..++..|+..+..|+++..
T Consensus        80 ~~~l~~l~~~~~~l~a~~~   98 (423)
T TIGR01843        80 EADAAELESQVLRLEAEVA   98 (423)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            3555555555555555444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=94.15  E-value=18  Score=44.08  Aligned_cols=81  Identities=23%  Similarity=0.330  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          381 QRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       381 erLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      ..+..+|.++...+..+-+....-.--=+.|+..+..++.-+..+++....+...+..|+.--.+|...+..+..+|+..
T Consensus       350 r~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei  429 (570)
T COG4477         350 RKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI  429 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444443334445566666666666666666666666677777766677777777777777655


Q ss_pred             C
Q 001620          461 K  461 (1043)
Q Consensus       461 ~  461 (1043)
                      +
T Consensus       430 k  430 (570)
T COG4477         430 K  430 (570)
T ss_pred             H
Confidence            4

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.97  E-value=5  Score=46.20  Aligned_cols=81  Identities=15%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHhH
Q 001620          378 ALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL-------NRSVEDQNYSFQTHLTEARYNI  450 (1043)
Q Consensus       378 a~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l-------~esVe~e~~~L~srftEa~~~L  450 (1043)
                      .+++.++..+..|+--++.+-+|+.+|..+|+-.+.+...+-.++.-+=.-       +..+-.++.=|+.++..+..+.
T Consensus       133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~  212 (319)
T PF09789_consen  133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK  212 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666677777777777777777777777777777777776666544222       5556666666777777777666


Q ss_pred             HHHHHhhc
Q 001620          451 DHLSHKLK  458 (1043)
Q Consensus       451 ~eLseeL~  458 (1043)
                      .-+...|.
T Consensus       213 ~l~k~~i~  220 (319)
T PF09789_consen  213 ELLKQTIN  220 (319)
T ss_pred             HHHHHHHH
Confidence            66655554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=93.85  E-value=24  Score=44.26  Aligned_cols=168  Identities=15%  Similarity=0.229  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          200 SYENWLAKYWDIE----EQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERK  275 (1043)
Q Consensus       200 qyq~~lekl~eLE----~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~e  275 (1043)
                      .+.....++.+|+    .++++..++|+.|+..      +.+.+...-.+-..|...+..+..|++....-.+-++....
T Consensus       216 KlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q------~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~  289 (786)
T PF05483_consen  216 KLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQ------LKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNE  289 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3445555555554    5678888888888887      77777777778888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHH
Q 001620          276 RIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEM  355 (1043)
Q Consensus       276 RI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~EL  355 (1043)
                      ..+.+..++..++..+-....-.                ..|          +..++.....|-.+..++          
T Consensus       290 ~qe~L~~eL~~~K~slq~~~~tq----------------~~l----------e~~lq~~~k~~~qlt~eK----------  333 (786)
T PF05483_consen  290 EQEHLLQELEDIKQSLQESESTQ----------------KAL----------EEDLQQATKTLIQLTEEK----------  333 (786)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----------------HHH----------HHHHHHHHHHHHHHHHhH----------
Confidence            88888888877776664321100                001          333444445555544444          


Q ss_pred             HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 001620          356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK  409 (1043)
Q Consensus       356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe  409 (1043)
                      ...|+++-.-.+.....+.+.+..|-.|..-+.--+.+++.+++++..|.-+-.
T Consensus       334 e~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLq  387 (786)
T PF05483_consen  334 EAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQ  387 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            123444444444455555555555555555555555555555555554444333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=93.81  E-value=5.4  Score=42.82  Aligned_cols=38  Identities=21%  Similarity=0.339  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620          255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI  292 (1043)
Q Consensus       255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~  292 (1043)
                      .+..|.+....+.+.......++.+...++..++..+.
T Consensus        69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~  106 (194)
T PF15619_consen   69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK  106 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.78  E-value=8.4  Score=45.97  Aligned_cols=132  Identities=14%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----HHHHH
Q 001620          257 TQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----REDLE  332 (1043)
Q Consensus       257 ~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E~rLe  332 (1043)
                      .....-++-...++.....++..++.++..++.+.+-.-....+        .....+..+..+...++.+    +.++.
T Consensus       157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~--------~~~~~l~~l~~~l~~~~~~l~~~~a~~~  228 (498)
T TIGR03007       157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEG--------DYYSEISEAQEELEAARLELNEAIAQRD  228 (498)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566677788888888888888888888765432111000        0112333333333333322    33333


Q ss_pred             HHHHHHHHHHhcC-CCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001620          333 SLREKIKEQLEFG-SSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRT  396 (1043)
Q Consensus       333 ~Ld~kInEl~eek-e~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklke  396 (1043)
                      .+...+......- ...+..+..+..++.++..++..+...+...--.+..++.+++.++..+..
T Consensus       229 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~  293 (498)
T TIGR03007       229 ALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE  293 (498)
T ss_pred             HHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence            3333333211000 011234557778888888888888888888888888888888888887654

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.64  E-value=0.92  Score=58.31  Aligned_cols=109  Identities=24%  Similarity=0.354  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQ-------RLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL  425 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~Ie-------rLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev  425 (1043)
                      ..++++|+++.+++.+++..|...++..-       .|..+++.++..+..-..++..+...-..++..|++.+.-+...
T Consensus       444 ~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~  523 (1041)
T KOG0243|consen  444 KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQ  523 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666655       89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccC
Q 001620          426 HDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK  461 (1043)
Q Consensus       426 q~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~  461 (1043)
                      ......+..++..|+....++...+..|-.+|....
T Consensus       524 ~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~  559 (1041)
T KOG0243|consen  524 EKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKD  559 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999888886643

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.64  E-value=26  Score=44.02  Aligned_cols=70  Identities=17%  Similarity=0.224  Sum_probs=34.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620          372 SFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQT  441 (1043)
Q Consensus       372 ~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~s  441 (1043)
                      .+....+.++++..+-.-+...+..|-......+.+-..+..++..+-+++..+..+++.|+.-..-+..
T Consensus       385 klk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~  454 (716)
T KOG4593|consen  385 KLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEA  454 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence            3333333333333333333444444444444555555555566666666666666666666554333333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=93.62  E-value=16  Score=41.66  Aligned_cols=109  Identities=13%  Similarity=0.274  Sum_probs=71.4

Q ss_pred             ccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 001620          350 LTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLN  429 (1043)
Q Consensus       350 lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~  429 (1043)
                      +.++-+.....+.+-.+-.++.+.-.-++.+.+.-..=+-+++++..|+.+..-|+..-++...+..--+.-+.-+|+-+
T Consensus       179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f  258 (305)
T PF14915_consen  179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF  258 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34455666777788888888888888888888888888888888877777777776666666555444443333333322


Q ss_pred             ----HHHHHH----HhhHHHHHHHHHHhHHHHHHhhc
Q 001620          430 ----RSVEDQ----NYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       430 ----esVe~e----~~~L~srftEa~~~L~eLseeL~  458 (1043)
                          ..++.+    .--|..+--++.....+|.+.++
T Consensus       259 ~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~  295 (305)
T PF14915_consen  259 QDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY  295 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                222222    22366667777777777777665

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.58  E-value=12  Score=40.07  Aligned_cols=118  Identities=17%  Similarity=0.264  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhh
Q 001620          241 RTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDID  320 (1043)
Q Consensus       241 Ral~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee  320 (1043)
                      =..++...|..+++.|.+++............+..++..++..+..+......                           
T Consensus        24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~---------------------------   76 (221)
T PF04012_consen   24 PEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL---------------------------   76 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence            33778888888888888888888888888888888888877777777654420                           


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          321 VVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD  400 (1043)
Q Consensus       321 ~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE  400 (1043)
                                          -+..+  -+.-..+...++..+.+.+..++..+..+...+..|+..+..++.++.++...
T Consensus        77 --------------------Al~~g--~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k  134 (221)
T PF04012_consen   77 --------------------ALAAG--REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSK  134 (221)
T ss_pred             --------------------HHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                00000  00011122333455566666666666666666666666666666666666666


Q ss_pred             HHHhhhc
Q 001620          401 KASLIND  407 (1043)
Q Consensus       401 l~~Lk~d  407 (1043)
                      +..|...
T Consensus       135 ~~~l~ar  141 (221)
T PF04012_consen  135 REELKAR  141 (221)
T ss_pred             HHHHHHH
Confidence            5555443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF13166 AAA_13: AAA domain

Probab=93.40  E-value=18  Score=45.01  Aligned_cols=15  Identities=20%  Similarity=0.399  Sum_probs=6.9

Q ss_pred             hHHHHHHHHhhhHHH
Q 001620          705 ILAEYTTVLRNYKEA  719 (1043)
Q Consensus       705 LL~eYtsvLrnYke~  719 (1043)
                      ..++|..++...++.
T Consensus       612 ~~~~Y~~l~~~l~~~  626 (712)
T PF13166_consen  612 IKSEYHYLFKELYDF  626 (712)
T ss_pred             CcHHHHHHHHHHHHH
Confidence            345555444444443

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=93.28  E-value=11  Score=41.04  Aligned_cols=188  Identities=16%  Similarity=0.178  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh
Q 001620          247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ  326 (1043)
Q Consensus       247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e  326 (1043)
                      ..+...+.+|.-|. +.......++.+...|..+-.++..+..++..+......+..-+..    -.+++|+..+.....
T Consensus        18 ~~i~~l~~al~~L~-~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~----~s~~eLeq~l~~~~~   92 (240)
T PF12795_consen   18 ALIQDLQQALSFLD-EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILAN----LSLEELEQRLSQEQA   92 (240)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCccc----CCHHHHHHHHHHHHH
Confidence            45555666666654 4566788888999999999999999999998885541111111111    123334444333322


Q ss_pred             h----HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          327 D----REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETS--FSSQTALVQRLRTETDELQAQIRTLEDD  400 (1043)
Q Consensus       327 E----E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~--ISsqea~IerLr~EleELqeklkeLEeE  400 (1043)
                      .    ..++......|....-.-+-+-..+.+....++++.+....+-..  -.-..++.-.|..++.-+..++..++-+
T Consensus        93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~e  172 (240)
T PF12795_consen   93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQE  172 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2    444455555554444333223333344444444444443332100  1223555666666666666666666666


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001620          401 KASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSF  439 (1043)
Q Consensus       401 l~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L  439 (1043)
                      +...-.-.+=++.+...+..++..++..+..++..++..
T Consensus       173 l~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~  211 (240)
T PF12795_consen  173 LLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK  211 (240)
T ss_pred             HHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655544444444444445555555555555555554443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.23  E-value=5.3  Score=40.55  Aligned_cols=120  Identities=19%  Similarity=0.257  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      ...+..+..=|..++...       ..-.+..+.+..++..++..+..++..+.+|+..+++++..+..++.....|...
T Consensus        30 ~~~~~~vin~i~~Ll~~~-------~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~  102 (151)
T PF11559_consen   30 EDNDVRVINCIYDLLQQR-------DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ  102 (151)
T ss_pred             cccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666677776644       4556667888889999999999999999999999999999999999998999998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      ...+...++...+++.+++..++.+..+-.+--.+.   .-+|+.|...|
T Consensus       103 ~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkk---e~E~~kLk~rL  149 (151)
T PF11559_consen  103 LKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKK---EREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence            889999999998888888888887777644333222   24555555444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.20  E-value=4.4  Score=44.41  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHhcCC-CccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          328 REDLESLREKIKEQLEFGS-SGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN  406 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke-~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~  406 (1043)
                      ....+.+..+|.+..+... .....+..+..++..+..++..++..|..+...|+..+..+++++..+......+.....
T Consensus        33 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~  112 (302)
T PF10186_consen   33 KEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQD  112 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566666666665110 022355777777888888888888888888888888888888887777777776664444


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          407 DKKDLSSKLVEMEEKLLRLHDLNRSVEDQ  435 (1043)
Q Consensus       407 dRe~L~ekLkElEeel~evq~l~esVe~e  435 (1043)
                      -.......+.++...+...+..+..+..+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  141 (302)
T PF10186_consen  113 LVESRQEQLEELQNELEERKQRLSQLQSQ  141 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555444444444444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=93.19  E-value=10  Score=44.32  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKS  199 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~s  199 (1043)
                      .++.||+.++..|..|.+....
T Consensus        94 ~kl~RL~~Ev~EL~eEl~~~~~  115 (388)
T PF04912_consen   94 QKLQRLRREVEELKEELEKRKA  115 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            8888888888888888877643

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=93.17  E-value=4.2  Score=46.47  Aligned_cols=220  Identities=20%  Similarity=0.284  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHH-HHHHHHHHHHHH
Q 001620          181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAA-ALKSCRETLTQM  259 (1043)
Q Consensus       181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~-aIksceEtL~eL  259 (1043)
                      ..|+..+..|+.+-..++.++...-.+...|...+..+....-.++..             +..-+. --+.+-..|..|
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~-------------aEqEEE~isN~LlKkl~~l   89 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAK-------------AEQEEEFISNTLLKKLQQL   89 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Confidence            677888888888877777777777666666666666555555555433             222222 224455667777


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHH
Q 001620          260 EEEQEKSAEEAKIERKRIK-DARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKI  338 (1043)
Q Consensus       260 Eeere~s~eEa~~l~eRI~-eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kI  338 (1043)
                      ..+.+.+.-.+....+.+. .+..++..|..+-..++..++.                         +.+--+..|..+|
T Consensus        90 ~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~-------------------------EqE~~V~kL~k~i  144 (310)
T PF09755_consen   90 KKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQ-------------------------EQEYLVNKLQKKI  144 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hHHHHHHHHHHHH
Confidence            7777777666666655554 3666666666666544332222                         0133344444555


Q ss_pred             HHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 001620          339 KEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFS-SQTALVQRLRTETDELQAQIRTLEDDKASL-------------  404 (1043)
Q Consensus       339 nEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~IS-sqea~IerLr~EleELqeklkeLEeEl~~L-------------  404 (1043)
                      ..+.-+.       .......+.|-..+++||.... .|+..|++|-..++.|.+.-+.|+..+..=             
T Consensus       145 ~~Le~e~-------~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~  217 (310)
T PF09755_consen  145 ERLEKEK-------SAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNV  217 (310)
T ss_pred             HHHHHHH-------HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhh
Confidence            5442222       2234455677777888887775 466778888888888887777777776521             


Q ss_pred             ---hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001620          405 ---INDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTE  445 (1043)
Q Consensus       405 ---k~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftE  445 (1043)
                         .+....+...++.+..++.+++..+...+.+...-..++.+
T Consensus       218 ~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~  261 (310)
T PF09755_consen  218 SEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQ  261 (310)
T ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11224445556666666666666555555554444444443

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=93.13  E-value=4.2  Score=42.51  Aligned_cols=142  Identities=18%  Similarity=0.273  Sum_probs=103.0

Q ss_pred             cccchhhHhhhhhh-HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhh-hHHHHHHHHHHHHHHH
Q 001620          314 SDRSDIDVVRTAQD-REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSS-QTALVQRLRTETDELQ  391 (1043)
Q Consensus       314 IpeLeee~~~l~eE-E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISs-qea~IerLr~EleELq  391 (1043)
                      |..-..++-.+.+. ..+++.+..+|.+....-......|+.|...--.+-.+.+..-..+.. .++.|...=.+...++
T Consensus        11 ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ   90 (159)
T PF05384_consen   11 IESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQ   90 (159)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHH
Confidence            33344455555444 555555555555554433222233455555555555666655555543 3577888888899999


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620          392 AQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSH  455 (1043)
Q Consensus       392 eklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLse  455 (1043)
                      -++.-+.+.-..|+..|+.|...|+.+..-+.+...++..|..=++-|...+..+.+.|.++..
T Consensus        91 ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~  154 (159)
T PF05384_consen   91 VRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ  154 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999888999999999999999999999999999999999999999999999998888753

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.09  E-value=3.8  Score=42.02  Aligned_cols=92  Identities=15%  Similarity=0.193  Sum_probs=39.5

Q ss_pred             HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001620          360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSF  439 (1043)
Q Consensus       360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L  439 (1043)
                      +.+.++|-+|+..+.-.+..-..+..+.+-.++.+.+|+.++..+...+..|...|..+..+...+-...+..+.++..|
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHhHH
Q 001620          440 QTHLTEARYNID  451 (1043)
Q Consensus       440 ~srftEa~~~L~  451 (1043)
                      .++...+..-|.
T Consensus       100 E~~~~~~~~~l~  111 (140)
T PF10473_consen  100 ESLNSSLENLLQ  111 (140)
T ss_pred             HHHhHHHHHHHH
Confidence            444333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK10698 phage shock protein PspA; Provisional

Probab=93.08  E-value=6.9  Score=42.72  Aligned_cols=117  Identities=13%  Similarity=0.133  Sum_probs=75.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh-hHHHHHHHHHHHHHHH
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE-DEEARTLMAAAALKSC  252 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE-D~eARal~aE~aIksc  252 (1043)
                      .+++.=..-|.--|..++.....++..+-+++..-..+++++..++..+..++...  ...+. ..+.-+..+=..-..|
T Consensus        20 dkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA--~~Al~~G~EdLAr~AL~~K~~~   97 (222)
T PRK10698         20 EKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA--ELALRKEKEDLARAALIEKQKL   97 (222)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHH
Confidence            34443344555566667777777777777777777778888888888887776652  11111 1111112222445567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620          253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFI  292 (1043)
Q Consensus       253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~  292 (1043)
                      .+.+..|+..+......+..+...+..++.++..++..-.
T Consensus        98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~  137 (222)
T PRK10698         98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ  137 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888888888888888877777777776554

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=92.79  E-value=38  Score=44.39  Aligned_cols=211  Identities=16%  Similarity=0.246  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          209 WDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK  288 (1043)
Q Consensus       209 ~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk  288 (1043)
                      .+|+.+|..+..++..||.- -.-.++-+.+.-...-++-|...-..|..|+..--.-....+..-..+..+..+++=|+
T Consensus      1066 ~eLReQIq~~KQ~LesLQRA-V~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLR 1144 (1439)
T PF12252_consen 1066 SELREQIQSVKQDLESLQRA-VVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLR 1144 (1439)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-hcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777777777777632 22335655666666666777777777777776665555666666667777777777777


Q ss_pred             HhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH----
Q 001620          289 HEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVS----  364 (1043)
Q Consensus       289 ~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvn----  364 (1043)
                      ++-.++....+.  +                .-+.++.-|.+|+.+.-+|...         -+.+++..|..|++    
T Consensus      1145 nEK~Rmh~~~dk--V----------------DFSDIEkLE~qLq~~~~kL~dA---------yl~eitKqIsaLe~e~PK 1197 (1439)
T PF12252_consen 1145 NEKIRMHSGTDK--V----------------DFSDIEKLEKQLQVIHTKLYDA---------YLVEITKQISALEKEKPK 1197 (1439)
T ss_pred             hHHHhhccCCCc--c----------------cHHHHHHHHHHHHHhhhhhHHH---------HHHHHHHHHHHHHhhCCC
Confidence            777666554433  1                1122223366677777776654         34778888888887    


Q ss_pred             hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Q 001620          365 KVVNLETSFSSQTALVQRLRTETDELQAQIRTLED--DKASLINDKKDLSSKLVEMEEKLL-----RLHDLNRSVEDQNY  437 (1043)
Q Consensus       365 KV~sLE~~ISsqea~IerLr~EleELqeklkeLEe--El~~Lk~dRe~L~ekLkElEeel~-----evq~l~esVe~e~~  437 (1043)
                      +..++..+|++..+.+..++.--   +++++.=..  |--.| +|-+.|+.+|+.+-.-+.     .++.....  .+..
T Consensus      1198 nltdvK~missf~d~laeiE~Lr---nErIKkHGaSkePLDl-SDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnq--me~~ 1271 (1439)
T PF12252_consen 1198 NLTDVKSMISSFNDRLAEIEFLR---NERIKKHGASKEPLDL-SDLDKLKGQLQKINQNLVKALINTIRVSLNQ--MEVK 1271 (1439)
T ss_pred             chhhHHHHHHHHHhhhhHHHHHH---HHHhhccCCCCCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhh
Confidence            34555666665555444443311   122222111  11123 666666666666554332     22222222  2355


Q ss_pred             hHHHHHHHHHHhHHHH
Q 001620          438 SFQTHLTEARYNIDHL  453 (1043)
Q Consensus       438 ~L~srftEa~~~L~eL  453 (1043)
                      +++..-.++..+|+.|
T Consensus      1272 tf~~q~~eiq~n~~ll 1287 (1439)
T PF12252_consen 1272 TFEEQEKEIQQNLQLL 1287 (1439)
T ss_pred             hhhhhhHHHHHHHHHH
Confidence            6666667777777777

There is little literature describing the family.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=92.75  E-value=37  Score=43.25  Aligned_cols=50  Identities=30%  Similarity=0.292  Sum_probs=33.4

Q ss_pred             hhHHHHHHHhHHHHHHhhhhhhHHHhhhhhHHHHH----HHHhhhhhHHHHhhh
Q 001620          813 MDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLK----NDISKLVSKLEEKQR  862 (1043)
Q Consensus       813 ~~ID~lLEENL~FwlrFSts~hqiQkFqt~~~dLq----~el~k~~~~l~~~~~  862 (1043)
                      .|+..|.|+||-.===.||==-||=-+.|=.+--|    .=|++|.+|.+..|.
T Consensus       583 ~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~  636 (717)
T PF09730_consen  583 KDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKA  636 (717)
T ss_pred             ccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            47788999999766668888888887777555433    234565555554443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.74  E-value=6.4  Score=43.17  Aligned_cols=80  Identities=20%  Similarity=0.343  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHH--------hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVS--------KVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK  401 (1043)
Q Consensus       330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvn--------KV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl  401 (1043)
                      ++-.+...|..+....       +.+..+|+++.+        .+..+..++......+..++..++.++.++......+
T Consensus        21 ~L~~~~~~l~~~~~~~-------~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l   93 (302)
T PF10186_consen   21 RLLELRSELQQLKEEN-------EELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERL   93 (302)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666666777766655       555555666554        5555566666666666666666666666666666555


Q ss_pred             HHhhhchHHHHHHHH
Q 001620          402 ASLINDKKDLSSKLV  416 (1043)
Q Consensus       402 ~~Lk~dRe~L~ekLk  416 (1043)
                      ..++.........+.
T Consensus        94 ~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   94 EELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555444444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.59  E-value=4.4  Score=43.60  Aligned_cols=76  Identities=14%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHhHHHHHH
Q 001620          384 RTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNR--------SVEDQNYSFQTHLTEARYNIDHLSH  455 (1043)
Q Consensus       384 r~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~e--------sVe~e~~~L~srftEa~~~L~eLse  455 (1043)
                      +..+..++.++..++.++..|+-+.+.|..++..++.+++++.+...        ...-++.-|+..+..+...++....
T Consensus        85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea  164 (201)
T PF13851_consen   85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA  164 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666666667677777777777666666666666654433        3333444555555555555555555


Q ss_pred             hhcc
Q 001620          456 KLKI  459 (1043)
Q Consensus       456 eL~s  459 (1043)
                      +|.+
T Consensus       165 qL~e  168 (201)
T PF13851_consen  165 QLNE  168 (201)
T ss_pred             HHHH
Confidence            5544

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=92.54  E-value=45  Score=43.81  Aligned_cols=15  Identities=40%  Similarity=0.403  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHhhhh
Q 001620           72 AYRAYRALAERYDHI   86 (1043)
Q Consensus        72 ~~r~Yr~Laeryd~~   86 (1043)
                      +-|--.||+++-.|+
T Consensus       326 LGRVInALVe~s~HI  340 (1041)
T KOG0243|consen  326 LGRVINALVEHSGHI  340 (1041)
T ss_pred             HHHHHHHHHccCCCC
Confidence            456666777765553

>PRK11281 hypothetical protein; Provisional

Probab=92.51  E-value=33  Score=45.70  Aligned_cols=128  Identities=8%  Similarity=-0.032  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhh
Q 001620          245 AAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRT  324 (1043)
Q Consensus       245 aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l  324 (1043)
                      ++..+.+.+..+.+.+........++.....+-+++...+.+....+..+..++.++..        +.-+        +
T Consensus       126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~--------~~~~--------l  189 (1113)
T PRK11281        126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKV--------GGKA--------L  189 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCC--------CCCc--------C
Confidence            44555555555555555555555555556666666666666666655555443333111        0000        1


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH
Q 001620          325 AQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL  390 (1043)
Q Consensus       325 ~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL  390 (1043)
                      +  +.+...+..+..-+.....+......-....++-+.-+..-+..++..++.+|..|+..+..+
T Consensus       190 ~--~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k  253 (1113)
T PRK11281        190 R--PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK  253 (1113)
T ss_pred             C--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  223344555544444443333333333333344444444444445555555555555555543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.47  E-value=3.2  Score=43.32  Aligned_cols=62  Identities=16%  Similarity=0.383  Sum_probs=36.4

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 001620          351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLS  412 (1043)
Q Consensus       351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~  412 (1043)
                      .+..+..+++++.+++.++...+.........++......++++..+......+..+-.++.
T Consensus        89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555666666666666666666666666665555555555555555555555555555

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=92.42  E-value=1.6  Score=47.52  Aligned_cols=94  Identities=17%  Similarity=0.240  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 001620          330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK  409 (1043)
Q Consensus       330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe  409 (1043)
                      +-..++.-++-+..-.     .+.||.+..++|.+|.-.+...-...-...++|..+.++++++++.|+.++..|.+.+.
T Consensus       113 ~nAlvRAGLktL~~v~-----~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~  187 (290)
T COG4026         113 KNALVRAGLKTLQRVP-----EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK  187 (290)
T ss_pred             HHHHHHHHHHHHhccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344666777776655     35688888888888776665555555555566666666666666666666665555544


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 001620          410 DLSSKLVEMEEKLLRLHDL  428 (1043)
Q Consensus       410 ~L~ekLkElEeel~evq~l  428 (1043)
                      .|-.++..++.+.+++..-
T Consensus       188 ~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         188 KLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             hchhHHHHHHHHHHHhccc
Confidence            4444444444444444333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.39  E-value=25  Score=44.44  Aligned_cols=135  Identities=13%  Similarity=0.151  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh----H
Q 001620          253 RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD----R  328 (1043)
Q Consensus       253 eEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE----E  328 (1043)
                      .........-..-+..++..+..++..++.++..++....-...  ....+..      ..+..++.++...+.+    +
T Consensus       186 ~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~--~~~~~~~------~~L~~l~~ql~~a~~~~~~a~  257 (754)
T TIGR01005       186 AAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG--NNATLAT------QQLAELNTELSRARANRAAAE  257 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc--CCccchH------HHHHHHHHHHHHHHHHHHHHH
Confidence            34444555556677778888888888999999999887654422  1111100      2344445554444433    4


Q ss_pred             HHHHHHHHHHHHHHhcC---------CCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 001620          329 EDLESLREKIKEQLEFG---------SSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIR  395 (1043)
Q Consensus       329 ~rLe~Ld~kInEl~eek---------e~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklk  395 (1043)
                      .+++.+...+..-....         ......+.+|..++.++..+++.+.......--.|..++.++++++..+.
T Consensus       258 a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~  333 (754)
T TIGR01005       258 GTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR  333 (754)
T ss_pred             HHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence            44444544443210000         00113466666666666766666666665555556666666666665543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.35  E-value=31  Score=41.46  Aligned_cols=138  Identities=17%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHh
Q 001620          247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDAR----DKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVV  322 (1043)
Q Consensus       247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE----~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~  322 (1043)
                      .++..-..-|++|+-.+..+...+..+.+.+++-+    .+...|+.++...+.  ++        +.|.+|.+++..+.
T Consensus       286 e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~--e~--------~e~~~IqeleqdL~  355 (521)
T KOG1937|consen  286 EALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLET--ED--------EEIRRIQELEQDLE  355 (521)
T ss_pred             HhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc--hH--------HHHHHHHHHHHHHH
Confidence            34455566677788888777777777777777744    334444444443322  11        11334444444443


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          323 RTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKA  402 (1043)
Q Consensus       323 ~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~  402 (1043)
                      .+.++-.+-+.+..++....+.       +.+-.- .-.+.-+|-.+-.+|-.|.+.|-++-.++-+|++.+..+.+.+.
T Consensus       356 a~~eei~~~eel~~~Lrsele~-------lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~  427 (521)
T KOG1937|consen  356 AVDEEIESNEELAEKLRSELEK-------LPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALN  427 (521)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhc-------CCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333311112222222221111       111001 34455667777778888888888888888888888887776654

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=92.34  E-value=12  Score=45.56  Aligned_cols=78  Identities=19%  Similarity=0.309  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          381 QRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       381 erLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      -.+..|-..|..++...|.++..+..+-..+...+..+++++...+   ..-+.|++.+..|+..+...|..-.++++..
T Consensus       437 ~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr---~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L  513 (518)
T PF10212_consen  437 VHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTR---RNYEEQLSMMSEHLASMNEQLAKQREEIQTL  513 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666666666666666666666667777776665554   4677888888888888888888777777665


Q ss_pred             C
Q 001620          461 K  461 (1043)
Q Consensus       461 ~  461 (1043)
                      |
T Consensus       514 K  514 (518)
T PF10212_consen  514 K  514 (518)
T ss_pred             h
Confidence            4

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.31  E-value=5.7  Score=39.80  Aligned_cols=107  Identities=21%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      +.++..+..+|..+..       .+.+...+++.=+-+-+..-..+....+....++.++..++.........+..   .
T Consensus        23 ~~~~~~~~~dl~~q~~-------~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~---~   92 (132)
T PF07926_consen   23 EEQLQSLREDLESQAK-------IAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEE---S   92 (132)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            4445555555555433       23444445554444444444444444444444444444444444444433332   2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620          408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT  444 (1043)
Q Consensus       408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srft  444 (1043)
                      ......+-..++.++..++.....+..++..|+.++.
T Consensus        93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2223344444455555555555555556555555554

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=92.30  E-value=5.5  Score=49.66  Aligned_cols=57  Identities=19%  Similarity=0.250  Sum_probs=42.1

Q ss_pred             HhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 001620          364 SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE  420 (1043)
Q Consensus       364 nKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEe  420 (1043)
                      ++..-+-.+-..+-+.+++|..+++.+++.+.++.-++.-|..+.++|.-++..|+.
T Consensus       202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~  258 (916)
T KOG0249|consen  202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR  258 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444444455555666778888888888888888888888888888888877777773

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.29  E-value=1.6  Score=39.93  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 001620          378 ALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKL  422 (1043)
Q Consensus       378 a~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel  422 (1043)
                      -.|++|+.+...|...-..|..+...|+.++......|+.+=.++
T Consensus        25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen   25 MENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333444444444444444444444444444444444444443333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=92.28  E-value=50  Score=43.72  Aligned_cols=26  Identities=15%  Similarity=0.155  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          196 FVKSSYENWLAKYWDIEEQIKELQQR  221 (1043)
Q Consensus       196 al~sqyq~~lekl~eLE~qISeaQee  221 (1043)
                      .+..++.....++..++..+..++..
T Consensus       620 ~~~~~l~~~~~~~~~~~~~~~~~~~~  645 (1047)
T PRK10246        620 ELQGQIAAHNQQIIQYQQQIEQRQQQ  645 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.27  E-value=14  Score=37.15  Aligned_cols=44  Identities=14%  Similarity=0.185  Sum_probs=24.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001620          185 KQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE  228 (1043)
Q Consensus       185 keI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE  228 (1043)
                      .+|..|+++...+.........++..++..+......+...|..
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~   46 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK   46 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK10698 phage shock protein PspA; Provisional

Probab=92.25  E-value=20  Score=39.14  Aligned_cols=52  Identities=15%  Similarity=0.243  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          239 EARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE  290 (1043)
Q Consensus       239 eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~e  290 (1043)
                      +.-..|+..-|..+++.|.++......+...-+.+..++..+...+..+...
T Consensus        23 EDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k   74 (222)
T PRK10698         23 EDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK   74 (222)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445577777888888888887777766666666777776666666666543

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.06  E-value=32  Score=41.05  Aligned_cols=49  Identities=18%  Similarity=0.119  Sum_probs=26.1

Q ss_pred             hHHHhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhchHHHHHHHH
Q 001620          368 NLETSFSSQTALVQRLRTETDELQ--------AQIRTLEDDKASLINDKKDLSSKLV  416 (1043)
Q Consensus       368 sLE~~ISsqea~IerLr~EleELq--------eklkeLEeEl~~Lk~dRe~L~ekLk  416 (1043)
                      +-..-|...-...++++...-.+.        .++.+|+-+...|+-++-.|.++=.
T Consensus       371 atqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqne  427 (502)
T KOG0982|consen  371 ATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNE  427 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhh
Confidence            333334444444444444444443        5666777777777666666554433

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=91.93  E-value=48  Score=42.76  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHH-HHHHHHHHHHHHHHHHHHH
Q 001620          180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEE-ARTLMAAAALKSCRETLTQ  258 (1043)
Q Consensus       180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~e-ARal~aE~aIksceEtL~e  258 (1043)
                      -.+++-....+-..++-+...|+.++.++...+....+.+.++..+-++.+....+...- -.++.+=..++.....+++
T Consensus       552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~E  631 (984)
T COG4717         552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAE  631 (984)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666677777778888888888888889988999999999888877665554321 1122233344444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 001620          259 MEEEQEKSAEEAKIERKRIKD  279 (1043)
Q Consensus       259 LEeere~s~eEa~~l~eRI~e  279 (1043)
                      |.-+...+.++-.....++.-
T Consensus       632 L~~q~~~L~ee~~af~~~v~~  652 (984)
T COG4717         632 LTHQVARLREEQAAFEERVEG  652 (984)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555544444443

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.74  E-value=45  Score=42.06  Aligned_cols=255  Identities=15%  Similarity=0.150  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhccccchhhHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSL-------QDEFGQGIVIEDEEARTLMAAAALK  250 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~L-------QdEf~~~a~IED~eARal~aE~aIk  250 (1043)
                      ..+..|.+.+..|++.+.-....+..+......|+.+++.+++++..-       ..-.|.-+.-+   .....-+.+-.
T Consensus       169 ~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~---~~~~~we~Er~  245 (739)
T PF07111_consen  169 SKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPE---VHSQAWEPERE  245 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcc---cccHHHHHHHH
Confidence            455556666666666655555556666666666666666666554331       11111111000   11112233446


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-HH
Q 001620          251 SCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-RE  329 (1043)
Q Consensus       251 sceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-E~  329 (1043)
                      .+.+|+..|++++..+..-+.-+.-|+.-+...+.=-+.++.+--...+. .-           |+-......+-.- ..
T Consensus       246 ~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~-Le-----------~e~~~K~q~LL~~WRE  313 (739)
T PF07111_consen  246 ELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDP-LE-----------PEFSRKCQQLLSRWRE  313 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-CC-----------chhHHHHHHHHHHHHH
Confidence            77788889999999888888888889988888777666666544222221 11           1111111111111 22


Q ss_pred             HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001620          330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALV-------QRLRTETDELQAQIRTLEDDKA  402 (1043)
Q Consensus       330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~I-------erLr~EleELqeklkeLEeEl~  402 (1043)
                      ++=.|.-.++..-++          ....+.++..+|++|+.++.++.-.-       +.--.+++==+-.-++|..++.
T Consensus       314 KVFaLmVQLkaQele----------h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELs  383 (739)
T PF07111_consen  314 KVFALMVQLKAQELE----------HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELS  383 (739)
T ss_pred             HHHHHHHHhhHHHHH----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence            333333333333222          23334555555555555555444433       3333333333344456777877


Q ss_pred             HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          403 SLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       403 ~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      .-...+..++.+...+++.+..|...+.++..-+.+--..+..+-+.|-.|+..|
T Consensus       384 rAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~Rl  438 (739)
T PF07111_consen  384 RAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRL  438 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            7778888888999999999998888888888754443333333333444444333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.65  E-value=2.9  Score=47.82  Aligned_cols=82  Identities=16%  Similarity=0.230  Sum_probs=39.3

Q ss_pred             HHHHHHhHHhHHHhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          359 IDEVVSKVVNLETSFSSQTALVQRLRT----ETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED  434 (1043)
Q Consensus       359 IdeLvnKV~sLE~~ISsqea~IerLr~----EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~  434 (1043)
                      +..++++...|...+....+....+..    ++..+++++..+..++...+.....++.++.++..++.........+..
T Consensus       174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~  253 (312)
T smart00787      174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT  253 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555433    5555555555555555544444444444444444444444444444444


Q ss_pred             HHhhHH
Q 001620          435 QNYSFQ  440 (1043)
Q Consensus       435 e~~~L~  440 (1043)
                      ++..++
T Consensus       254 ~I~~ae  259 (312)
T smart00787      254 EIAEAE  259 (312)
T ss_pred             HHHHHH
Confidence            433333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.57  E-value=6.7  Score=40.96  Aligned_cols=66  Identities=17%  Similarity=0.388  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 001620          354 EMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEME  419 (1043)
Q Consensus       354 ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElE  419 (1043)
                      +....+.++..++..++..+......+..++..........+..++.+..+......+..++.++.
T Consensus        85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444443333333333443333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=91.22  E-value=15  Score=42.27  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620          371 TSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL  425 (1043)
Q Consensus       371 ~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev  425 (1043)
                      ..|......|..++.++++++..+.++...+.........+..+|.+++..+.+.
T Consensus       211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~  265 (312)
T smart00787      211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC  265 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4444445555555556666666666666666666666666666666666655444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.20  E-value=16  Score=46.11  Aligned_cols=109  Identities=19%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSS-QTALVQRLRTETDELQAQIRTLEDDKASLIN  406 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISs-qea~IerLr~EleELqeklkeLEeEl~~Lk~  406 (1043)
                      ..++..++.++.++...       +.+.+-.+-.+...+.+++..|.. ....+..++.+++..+.++..|+..+..++.
T Consensus       294 ~~~l~~l~~~~~~l~~~-------y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~  366 (754)
T TIGR01005       294 RERQAELRATIADLSTT-------MLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKA  366 (754)
T ss_pred             HHHHHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555554332       233333344444444444444432 2222344455556666666666665555544


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001620          407 DKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEAR  447 (1043)
Q Consensus       407 dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~  447 (1043)
                      ....+.    ..+.++.++++..+..+...+.+-.++.++.
T Consensus       367 ~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~  403 (754)
T TIGR01005       367 ASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQAA  403 (754)
T ss_pred             HHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433322    2344444455544455555455555555443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.20  E-value=32  Score=41.00  Aligned_cols=28  Identities=7%  Similarity=0.050  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001620          265 KSAEEAKIERKRIKDARDKFESLKHEFI  292 (1043)
Q Consensus       265 ~s~eEa~~l~eRI~eaE~elesLk~el~  292 (1043)
                      ....+...+..++..++.++..++....
T Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~  196 (457)
T TIGR01000       169 AAEKTKAQLDQQISKTDQKLQDYQALKN  196 (457)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555554443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.16  E-value=16  Score=42.78  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001620          195 EFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEF  229 (1043)
Q Consensus       195 Eal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf  229 (1043)
                      .....-..-...++..++.++..++..+..++.+-
T Consensus       167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444455566666667777777777777776663

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.08  E-value=4.3  Score=49.88  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSV  432 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esV  432 (1043)
                      ......|-...+.+..++..+..++..+..|+.++++++..+..|+.+|..++..-..-.-+-++++..-.++..|.   
T Consensus       411 ~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~---  487 (652)
T COG2433         411 EEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLE---  487 (652)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---
Confidence            33444455566666666666666666666666666666666666666666665444322222233333333333333   


Q ss_pred             HHHHhhHHHHHHHHHHhHHHHH
Q 001620          433 EDQNYSFQTHLTEARYNIDHLS  454 (1043)
Q Consensus       433 e~e~~~L~srftEa~~~L~eLs  454 (1043)
                       .++..-..+..++...|..+.
T Consensus       488 -~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         488 -KELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHH
Confidence             333333666666666666663

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=90.82  E-value=6.7  Score=45.17  Aligned_cols=92  Identities=20%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001620          362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQT  441 (1043)
Q Consensus       362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~s  441 (1043)
                      +..++..++..+...++.+...+.++.++..++..|..+......+...|..++...+.++.+...++..+..+    +.
T Consensus       219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E----~~  294 (344)
T PF12777_consen  219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE----KE  294 (344)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch----hh
Confidence            34555555556666666666666666666666666666666666666666666666666666666666666665    33


Q ss_pred             HHHHHHHhHHHHHHhhccc
Q 001620          442 HLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       442 rftEa~~~L~eLseeL~s~  460 (1043)
                      |   =...+..+...+.++
T Consensus       295 R---W~~~~~~l~~~~~~l  310 (344)
T PF12777_consen  295 R---WSEQIEELEEQLKNL  310 (344)
T ss_dssp             C---CHCHHHHHHHHHHHH
T ss_pred             h---HHHHHHHHHHHhccc
Confidence            3   334555555555544

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=90.76  E-value=2.2  Score=39.09  Aligned_cols=59  Identities=20%  Similarity=0.343  Sum_probs=39.0

Q ss_pred             HhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620          367 VNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL  425 (1043)
Q Consensus       367 ~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev  425 (1043)
                      ..||.+|..+=..|..|+.++++|+++-..|.++...|+.+...|+.......++++.+
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666666666777778888888777777777777777666666665555444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=90.72  E-value=6.8  Score=43.65  Aligned_cols=128  Identities=21%  Similarity=0.223  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDEL----QAQIRTLEDDKAS  403 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleEL----qeklkeLEeEl~~  403 (1043)
                      .+.....+.+++++.+-.   ..--++|....+++..+..+|+...-..+-.+++++...+.-    -..+..|++++..
T Consensus        26 kq~f~~~reEl~EFQegS---rE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsq  102 (333)
T KOG1853|consen   26 KQHFLQMREELNEFQEGS---REIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQ  102 (333)
T ss_pred             HHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667777888865521   122356777788888888888877766666666666655543    3467889999999


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          404 LINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       404 Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      ++.-.+.|++.+++++..-+.+.+.-..-..-+..+..++..|...+.-|.++|.
T Consensus       103 t~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd  157 (333)
T KOG1853|consen  103 THAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD  157 (333)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999988888776665555566666666666666666655553

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.34  E-value=10  Score=47.97  Aligned_cols=73  Identities=18%  Similarity=0.236  Sum_probs=54.3

Q ss_pred             HH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Q 001620          178 KE-IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETL  256 (1043)
Q Consensus       178 ~E-IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL  256 (1043)
                      ++ |.++.....+++.....+..++++-+.++.+++.++..++.....|.++      +|++..+-..+...++.+...+
T Consensus       550 eeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR------~e~a~d~Qe~L~~R~~~vl~~l  623 (717)
T PF10168_consen  550 EEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER------YEEAKDKQEKLMKRVDRVLQLL  623 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44 6777777888888888888888888888888888888888888888777      7766666666555555444333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10869 recombination and repair protein; Provisional

Probab=90.27  E-value=55  Score=40.42  Aligned_cols=30  Identities=7%  Similarity=-0.037  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          196 FVKSSYENWLAKYWDIEEQIKELQQRVYSL  225 (1043)
Q Consensus       196 al~sqyq~~lekl~eLE~qISeaQeeV~~L  225 (1043)
                      .++..|+.+..++..+.+++..++......
T Consensus       154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~  183 (553)
T PRK10869        154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQER  183 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            445555555555555555555554444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=90.21  E-value=41  Score=38.84  Aligned_cols=21  Identities=10%  Similarity=0.278  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHhHHhHHHhhh
Q 001620          354 EMAEKIDEVVSKVVNLETSFS  374 (1043)
Q Consensus       354 ELaEkIdeLvnKV~sLE~~IS  374 (1043)
                      =|-.+++.|...+..|+..+.
T Consensus       182 ~L~Kqm~~l~~eKr~Lq~~l~  202 (310)
T PF09755_consen  182 RLWKQMDKLEAEKRRLQEKLE  202 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            344455666666666655554

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=90.16  E-value=54  Score=40.18  Aligned_cols=70  Identities=23%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHhc-CCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001620          328 REDLESLREKIKEQLEF-GSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTL  397 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~ee-ke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeL  397 (1043)
                      +..+++|..++++.++. .....+++.+.+..++-+.++-.-|+..|......|..|...+..+..++.--
T Consensus       307 ~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~q  377 (531)
T PF15450_consen  307 ESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQ  377 (531)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            67777777777776653 22255677777888888888888888888888888888887777777665433

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.14  E-value=50  Score=39.79  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620          261 EEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN  294 (1043)
Q Consensus       261 eere~s~eEa~~l~eRI~eaE~elesLk~el~~L  294 (1043)
                      .++.....++....++|..-+...+.|+.++..+
T Consensus       345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l  378 (521)
T KOG1937|consen  345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKL  378 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence            3445666777777888888888888888888776

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=90.09  E-value=25  Score=38.74  Aligned_cols=119  Identities=14%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHH
Q 001620          175 EGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRE  254 (1043)
Q Consensus       175 eAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceE  254 (1043)
                      +++.=..-|.-.|-..+.+...++...-+.++.-..+++++.+++.++..++... ..|.--.++.=+..+-.++.+++.
T Consensus        21 k~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A-~~Al~~g~E~LAr~al~~~~~le~   99 (225)
T COG1842          21 KAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA-ELALQAGNEDLAREALEEKQSLED   99 (225)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3333336677778888888888888888888888888888888888888887662 111111123334444566666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620          255 TLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN  294 (1043)
Q Consensus       255 tL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L  294 (1043)
                      .+.-++.....+..-...+...+..++.+|..++....-+
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l  139 (225)
T COG1842         100 LAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL  139 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777776666655433

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=89.88  E-value=0.37  Score=55.03  Aligned_cols=126  Identities=17%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      .++|..|.++|..+       +-+++.|.+-|-.+..+|.+|...+......|..+..+|+.+...+..+...+..|...
T Consensus        27 ~GDLs~I~eRLsaL-------Essv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsss   99 (326)
T PF04582_consen   27 PGDLSPIRERLSAL-------ESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSS   99 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            55666666666553       44667777778888888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhccc
Q 001620          408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~  460 (1043)
                      -..|...+.....-+..++..+....-.+.||+.........|..|...|.+.
T Consensus       100 Vs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~L  152 (326)
T PF04582_consen  100 VSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKAL  152 (326)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHH
Confidence            88888888888888999999999999999999999998888899988888764

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.29  E-value=4.7  Score=46.11  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=16.3

Q ss_pred             HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK  401 (1043)
Q Consensus       359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl  401 (1043)
                      +..+...+..++.+.....+.+..|+.+-+++...+..|+.+.
T Consensus        45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~   87 (314)
T PF04111_consen   45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL   87 (314)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444443333333333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=89.28  E-value=55  Score=40.19  Aligned_cols=96  Identities=17%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             HHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhch
Q 001620          336 EKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQ-------RLRTETDELQAQIRTLEDDKASLINDK  408 (1043)
Q Consensus       336 ~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~Ie-------rLr~EleELqeklkeLEeEl~~Lk~dR  408 (1043)
                      ..|..++.      .+|.+|...+..+.-|.+.+..+.......+.       .+..++.....++..|++||..   -|
T Consensus       412 ~LIk~~Y~------~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T---Tr  482 (518)
T PF10212_consen  412 QLIKSYYM------SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET---TR  482 (518)
T ss_pred             HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence            33555544      34677777777777776665554433333333       3444555555555555555442   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001620          409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQ  440 (1043)
Q Consensus       409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~  440 (1043)
                      ..-..+|.-|-+-+..+.+....-++++.+|+
T Consensus       483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33345555555555555544444444444444

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=89.27  E-value=14  Score=45.61  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLA-------KYWDIEEQIKELQQRVYSL  225 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~le-------kl~eLE~qISeaQeeV~~L  225 (1043)
                      .+-..+|+++..|+..|+.+.+||.=..+       ||-+||-.|.+-+..++..
T Consensus       104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnat  158 (861)
T KOG1899|consen  104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNAT  158 (861)
T ss_pred             CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchH
Confidence            34466888899999999999888865554       5556666666666655544

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=88.92  E-value=38  Score=41.30  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=52.0

Q ss_pred             HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001620          363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTH  442 (1043)
Q Consensus       363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~sr  442 (1043)
                      ..+++.+...|.+-+.+..++..++-.|-..+-.+..++..+.-+.+.|..-|..+.+..+.+++-...++++..-.-..
T Consensus       211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~  290 (596)
T KOG4360|consen  211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQM  290 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555555555555555555555555555555555555555555555555555555566


Q ss_pred             HHHHHHhHHHHH
Q 001620          443 LTEARYNIDHLS  454 (1043)
Q Consensus       443 ftEa~~~L~eLs  454 (1043)
                      |.|++.+|..|+
T Consensus       291 ~~EaeeELk~lr  302 (596)
T KOG4360|consen  291 LHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHHHHhhc
Confidence            666666666654

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.82  E-value=50  Score=37.96  Aligned_cols=32  Identities=13%  Similarity=0.158  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001620          177 LKEIDKLQKQILTLQTDKEFVKSSYENWLAKY  208 (1043)
Q Consensus       177 e~EIerLqkeI~~LQtEKEal~sqyq~~lekl  208 (1043)
                      +.+|+.|.+....|-.+.-.+.-++.....+.
T Consensus        21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~   52 (309)
T PF09728_consen   21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQ   52 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555554444444444433333333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.76  E-value=70  Score=39.52  Aligned_cols=112  Identities=17%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIND  407 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~d  407 (1043)
                      -++|-.|+.+++.+.-+       ++...+..+.+.-...++...-+..+.+--||+.+|-+.+-+...|=.+-.+|.++
T Consensus       106 l~kI~eleneLKq~r~e-------l~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE  178 (772)
T KOG0999|consen  106 LQKILELENELKQLRQE-------LTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE  178 (772)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555544332       24445556666667777777777777778888888888888887666666666666


Q ss_pred             hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001620          408 KKDLSSKLVEMEE---KLLRLHDLNRSVEDQNYSFQTHLTEA  446 (1043)
Q Consensus       408 Re~L~ekLkElEe---el~evq~l~esVe~e~~~L~srftEa  446 (1043)
                      +=.|+.....++.   +...++.-+.+++.+..-|.....++
T Consensus       179 NIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~  220 (772)
T KOG0999|consen  179 NISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA  220 (772)
T ss_pred             cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555554444433   33444444555555555555544443

>PLN02939 transferase, transferring glycosyl groups

Probab=88.64  E-value=25  Score=46.01  Aligned_cols=43  Identities=19%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             HHHHHHHhHHhHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          358 KIDEVVSKVVNLETSFS----SQTALVQRLRTETDELQAQIRTLEDD  400 (1043)
Q Consensus       358 kIdeLvnKV~sLE~~IS----sqea~IerLr~EleELqeklkeLEeE  400 (1043)
                      .++-++.||.-++..+.    +..+.|+-...++++++..+..|.+|
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (977)
T PLN02939        352 KVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE  398 (977)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444555555544433    23344445555666666666655544

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.61  E-value=12  Score=36.91  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=50.7

Q ss_pred             HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 001620          359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLR  424 (1043)
Q Consensus       359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~e  424 (1043)
                      ..++.|++++|+..+.....-+.+|-.+-++|...+..|..+...+.....+|+.+|.++..-++.
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888888888888888888888888888888888888877777777777777665554

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.50  E-value=12  Score=41.37  Aligned_cols=64  Identities=9%  Similarity=0.205  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHh
Q 001620          393 QIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHK  456 (1043)
Q Consensus       393 klkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLsee  456 (1043)
                      .|.++..+...|..+|....+.|+.+...+..+.+.+...+.+.+..+.....+..++.-|..+
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~   96 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE   96 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444444444333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=88.16  E-value=50  Score=39.96  Aligned_cols=110  Identities=12%  Similarity=0.199  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          180 IDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQM  259 (1043)
Q Consensus       180 IerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eL  259 (1043)
                      ++-|.+. .+|..-...++---..-..+|.+|.-.-..+.+.|..||..+          .+--..-.-|+.+++-|.+|
T Consensus       306 lqpleed-maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~----------~kQqvfvDiinkLk~niEeL  374 (527)
T PF15066_consen  306 LQPLEED-MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKI----------TKQQVFVDIINKLKENIEEL  374 (527)
T ss_pred             cCCcHHH-HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHH
Confidence            3444333 455555555555556666777777777777777777777762          23333334556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 001620          260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKI  300 (1043)
Q Consensus       260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~  300 (1043)
                      -+..-...-|-..+...+..+...+...++.+.....+++.
T Consensus       375 IedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKet  415 (527)
T PF15066_consen  375 IEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKET  415 (527)
T ss_pred             HHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            66666565666666666666666666666666655555544

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.06  E-value=67  Score=38.51  Aligned_cols=48  Identities=27%  Similarity=0.425  Sum_probs=32.3

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHH
Q 001620          351 TVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTET---DELQAQIRTLE  398 (1043)
Q Consensus       351 sV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~El---eELqeklkeLE  398 (1043)
                      ++.++.++..-|.++|-.+..=.....+.+.-+.+..   +.+++....+.
T Consensus       263 ~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lk  313 (446)
T KOG4438|consen  263 AMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELK  313 (446)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            5667777777777888777777777777666666555   55555554444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.72  E-value=7.5  Score=49.19  Aligned_cols=55  Identities=22%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001620          240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGN  294 (1043)
Q Consensus       240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~L  294 (1043)
                      .|...+...++.-...|.+|+++++.+.+.+..+.+|++++.++-+.|.+.+..+
T Consensus       565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v  619 (717)
T PF10168_consen  565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV  619 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555566777777777777777788888888888877777777544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=87.48  E-value=5  Score=37.52  Aligned_cols=64  Identities=14%  Similarity=0.242  Sum_probs=40.3

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          369 LETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSV  432 (1043)
Q Consensus       369 LE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esV  432 (1043)
                      ||.+|-.+-+.|.=|+-|+++|+++=..|..+...+...|+.|..+...+..++..-+.+++.+
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L   72 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455555666666667666667777777777777777777777776666555554443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.42  E-value=9  Score=42.25  Aligned_cols=98  Identities=13%  Similarity=0.181  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHhHHhHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 001620          352 VTEMAEKIDEVVSKVVNLET---SFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDL  428 (1043)
Q Consensus       352 V~ELaEkIdeLvnKV~sLE~---~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l  428 (1043)
                      |.++..+..++.-.+..+-.   .+..-+.-|..++.|.+.|...-....++|.....|...|..-++.++.++.+.+..
T Consensus         3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~   82 (230)
T PF10146_consen    3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK   82 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555554444444433   344445678888899999999889999999999999999999999999999999888


Q ss_pred             HHHHHHHHhhHHHHHHHHHHh
Q 001620          429 NRSVEDQNYSFQTHLTEARYN  449 (1043)
Q Consensus       429 ~esVe~e~~~L~srftEa~~~  449 (1043)
                      ..++..+..-|.....++..+
T Consensus        83 i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   83 IQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888766666555544443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF13166 AAA_13: AAA domain

Probab=87.39  E-value=88  Score=39.12  Aligned_cols=7  Identities=43%  Similarity=0.643  Sum_probs=3.0

Q ss_pred             hhcccch
Q 001620          167 VKSGLSK  173 (1043)
Q Consensus       167 ~~SgLSf  173 (1043)
                      +..|+.+
T Consensus       245 v~~G~~~  251 (712)
T PF13166_consen  245 VEQGLEL  251 (712)
T ss_pred             HHcCccC
Confidence            3444443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.27  E-value=62  Score=37.23  Aligned_cols=15  Identities=27%  Similarity=0.341  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHhHHHH
Q 001620          439 FQTHLTEARYNIDHL  453 (1043)
Q Consensus       439 L~srftEa~~~L~eL  453 (1043)
                      ++.....+...+..+
T Consensus       251 ~~~~l~~~~~~l~~~  265 (423)
T TIGR01843       251 AQARLAELRERLNKA  265 (423)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333334444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=87.08  E-value=85  Score=38.59  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=16.1

Q ss_pred             HHHHHHHHHhhhhhHHhhhhcccc
Q 001620           74 RAYRALAERYDHISTELQNANTTI   97 (1043)
Q Consensus        74 r~Yr~Laeryd~~t~el~~~~~~~   97 (1043)
                      +...-+--|.|.-.+||..-++-+
T Consensus        48 ~el~qvr~~~~~Q~seL~~l~~ev   71 (531)
T PF15450_consen   48 RELLQVRARVQLQDSELMQLRQEV   71 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456667788888888776654

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.88  E-value=31  Score=34.72  Aligned_cols=48  Identities=19%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSL  225 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~L  225 (1043)
                      .-|.+|+..|-.++.|+-+++.++.+....-..++.+|..+-.++..+
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778888888888877777777766666666666555544444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=86.63  E-value=5.6  Score=37.21  Aligned_cols=72  Identities=14%  Similarity=0.242  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 001620          352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLL  423 (1043)
Q Consensus       352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~  423 (1043)
                      ...|..+|.++|+.|.-|.-+|.+..++=..|..+++.+...-.+|+.+...|+.++..-+++|+.+--+++
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            356777788888888877777777777777777777776666667777777777777777777776655443

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=86.51  E-value=26  Score=38.91  Aligned_cols=102  Identities=21%  Similarity=0.295  Sum_probs=66.8

Q ss_pred             HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYS  438 (1043)
Q Consensus       359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~  438 (1043)
                      ..+...++..|+......+..-.+|.....++......|+.........+..|..++.++..++..+....+.-..+...
T Consensus        28 L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~  107 (246)
T PF00769_consen   28 LEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEE  107 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555666666777777777777777777777778888888889999999988888888888888888


Q ss_pred             HHHHHHHHHHhHHHHHHhhccc
Q 001620          439 FQTHLTEARYNIDHLSHKLKIQ  460 (1043)
Q Consensus       439 L~srftEa~~~L~eLseeL~s~  460 (1043)
                      ++..+.++...+..-..+|+.+
T Consensus       108 lq~el~~ar~~~~~ak~~L~~~  129 (246)
T PF00769_consen  108 LQEELEEAREDEEEAKEELLEV  129 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888888877777554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF14992 TMCO5: TMCO5 family

Probab=86.46  E-value=32  Score=39.17  Aligned_cols=91  Identities=18%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh-hHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ-DREDLESLRE  336 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e-EE~rLe~Ld~  336 (1043)
                      .|+.+.....+.-..+-.+|.+++..+.+|..+|....-..+.                -++. ..+-. -+..+++|+.
T Consensus         8 dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~----------------~e~e-~~~~~~~e~~l~~le~   70 (280)
T PF14992_consen    8 DLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADR----------------SEEE-DIISEERETDLQELEL   70 (280)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc----------------hhHH-hhhhhchHHHHHHHHh
Confidence            4556666777777888888899999999998888766332222                0111 11111 2556777777


Q ss_pred             HHHHHHhcCCCccccHHHHHHHHHHHHHh
Q 001620          337 KIKEQLEFGSSGSLTVTEMAEKIDEVVSK  365 (1043)
Q Consensus       337 kInEl~eeke~a~lsV~ELaEkIdeLvnK  365 (1043)
                      +...+-...++.+.+|.|+..++++-..+
T Consensus        71 e~~~LE~~ne~l~~~~~elq~k~~e~~~~   99 (280)
T PF14992_consen   71 ETAKLEKENEHLSKSVQELQRKQDEQETN   99 (280)
T ss_pred             hhHHHhhhhHhhhhhhhhhhhhhccccCC
Confidence            77776666666667777776666644433

>TIGR02977 phageshock_pspA phage shock protein A

Probab=86.39  E-value=54  Score=35.62  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchh-hHHHHHHHHHHHHHHHHHHHHHH
Q 001620          181 DKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIE-DEEARTLMAAAALKSCRETLTQM  259 (1043)
Q Consensus       181 erLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IE-D~eARal~aE~aIksceEtL~eL  259 (1043)
                      ..|.--|-.++.....++..+-++...--.++.++.+++..+..++...-  ..+. ..+.-+..+-.....++..+..|
T Consensus        27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~--~Al~~G~EdLAr~Al~~k~~~~~~~~~l  104 (219)
T TIGR02977        27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE--LALSKGREDLARAALIEKQKAQELAEAL  104 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555566666666666666555420  1111 11122222334667777788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          260 EEEQEKSAEEAKIERKRIKDARDKFESLKHEF  291 (1043)
Q Consensus       260 Eeere~s~eEa~~l~eRI~eaE~elesLk~el  291 (1043)
                      +.........+..+..++..++.++..++..-
T Consensus       105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~  136 (219)
T TIGR02977       105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQ  136 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777777777777777777777776544

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK10869 recombination and repair protein; Provisional

Probab=86.32  E-value=83  Score=38.90  Aligned_cols=31  Identities=10%  Similarity=0.119  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLK  288 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk  288 (1043)
                      ++..+++.+........++++-++-.++.|.
T Consensus       168 ~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~  198 (553)
T PRK10869        168 QSCRDLAQHQQQSQERAARKQLLQYQLKELN  198 (553)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444444443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=86.32  E-value=7.1  Score=48.06  Aligned_cols=89  Identities=17%  Similarity=0.271  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVED  434 (1043)
Q Consensus       355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~  434 (1043)
                      ....|..|.++|-.|+..+++....|++|+.+++.|+.++..+-.+..    .......+++.++.++..++..+..-..
T Consensus       420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~~  495 (652)
T COG2433         420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKKK  495 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555556666666666666666666666666666666555433    2223334455555555555555555555


Q ss_pred             HHhhHHHHHHHHH
Q 001620          435 QNYSFQTHLTEAR  447 (1043)
Q Consensus       435 e~~~L~srftEa~  447 (1043)
                      ...-|..++.++.
T Consensus       496 ~ve~L~~~l~~l~  508 (652)
T COG2433         496 RVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555544

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=86.29  E-value=1.1e+02  Score=38.98  Aligned_cols=256  Identities=12%  Similarity=0.157  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHH-------HHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAA-------AALK  250 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE-------~aIk  250 (1043)
                      +.|..|+++....+.|...+.-.++.-.+++.==+....-+|.+...-++.      -....-+..+++       .++.
T Consensus       338 ~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea------~~~lqqq~~~aee~Lk~v~eav~  411 (739)
T PF07111_consen  338 GQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEA------RRRLQQQTASAEEQLKLVSEAVS  411 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888887777666665532222222345555544433      111222333333       4556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccc-hhhhcccccchhhHhhhhhhHH
Q 001620          251 SCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDS-VKAVEESDRSDIDVVRTAQDRE  329 (1043)
Q Consensus       251 sceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~-le~iSeIpeLeee~~~l~eEE~  329 (1043)
                      +|+-.|..--.+.+.+...+..+..|+.-+-.++..|+.-+...-+-   ..+...+ --.-....+|..++..++++.+
T Consensus       412 S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Al---aqlrqe~~~~~pp~~~dL~~ELqqLReERd  488 (739)
T PF07111_consen  412 SSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLAL---AQLRQEQCPPSPPSVTDLSLELQQLREERD  488 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHH---HHHHhccCCCCCCchhhHHHHHHHHHHHHH
Confidence            66665555555556666677777777777777777766554433110   0011110 0000122256677777777755


Q ss_pred             HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 001620          330 DLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKK  409 (1043)
Q Consensus       330 rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe  409 (1043)
                      ++..=-.--..++..+  ...+-++....+..+-.+...|+.........+..+...+..-...+.+..++-..|+.+-.
T Consensus       489 Rl~aeLqlSa~liqqe--V~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~  566 (739)
T PF07111_consen  489 RLDAELQLSARLIQQE--VGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELT  566 (739)
T ss_pred             HHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5522111111111111  01112334445566666677777777777777777766666666666666666666655555


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001620          410 DLSSKLV-EMEEKLLRLHDLNRSVEDQNYSFQTHLTEAR  447 (1043)
Q Consensus       410 ~L~ekLk-ElEeel~evq~l~esVe~e~~~L~srftEa~  447 (1043)
                      ..++.+. .+.++..+|   ..++..++..+..++.++.
T Consensus       567 ~QQ~~y~~alqekvsev---Esrl~E~L~~~E~rLNeAR  602 (739)
T PF07111_consen  567 QQQEVYERALQEKVSEV---ESRLREQLSEMEKRLNEAR  602 (739)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            4443333 333333333   2233344444444444433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PRK04406 hypothetical protein; Provisional

Probab=86.26  E-value=3.2  Score=38.29  Aligned_cols=46  Identities=17%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             HHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          359 IDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL  404 (1043)
Q Consensus       359 IdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L  404 (1043)
                      |+.+..+|..||.+++-|+..|+.|+..+-..+..+..|...+..|
T Consensus         6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L   51 (75)
T PRK04406          6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV   51 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666666666666666555555

>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57

Probab=85.79  E-value=55  Score=35.15  Aligned_cols=168  Identities=18%  Similarity=0.212  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhh
Q 001620          247 AALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQ  326 (1043)
Q Consensus       247 ~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~e  326 (1043)
                      .||+.+++.|-.|+=++..+...+..+..+...-..-+..-..+-.   .....  +          ...-.+-...+..
T Consensus         4 sALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~---~~~~e--~----------~~q~~dl~~qL~a   68 (178)
T PF14073_consen    4 SALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERE---RAHQE--L----------SKQNQDLSSQLSA   68 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhh---cccch--h----------hhccHHHHHHHHH
Confidence            5889999999999999999999998888887654433321111110   00000  0          0000111222333


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHH-HhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          327 DREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVV-SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI  405 (1043)
Q Consensus       327 EE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLv-nKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk  405 (1043)
                      .+.|-..|+..|+-+              ...|..+. ++..-++..++-+... .--..++-..-+++.-||.|+.-|.
T Consensus        69 AEtRCslLEKQLeyM--------------Rkmv~~ae~er~~~le~q~~l~~e~-~~~~~~~~~klekLe~LE~E~~rLt  133 (178)
T PF14073_consen   69 AETRCSLLEKQLEYM--------------RKMVESAEKERNAVLEQQVSLQRER-QQDQSELQAKLEKLEKLEKEYLRLT  133 (178)
T ss_pred             HHHHHHHHHHHHHHH--------------HHHHHHHHHhhhHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHH
Confidence            355554454444333              33333333 3444444444333331 1113345555677888999999998


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001620          406 NDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLT  444 (1043)
Q Consensus       406 ~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srft  444 (1043)
                      .--.--..+|+.+++++.+=+.--.-|++...-|++-+.
T Consensus       134 ~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~lE  172 (178)
T PF14073_consen  134 ATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGLE  172 (178)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            888888899999999988877766677777666665543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=85.69  E-value=35  Score=34.64  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH
Q 001620          379 LVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRL  425 (1043)
Q Consensus       379 ~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~ev  425 (1043)
                      .+.+++.+++.+...+..|++.++.+......+..+.+.+..++..+
T Consensus        60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~  106 (151)
T PF11559_consen   60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL  106 (151)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=85.40  E-value=39  Score=37.55  Aligned_cols=45  Identities=27%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          244 MAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLK  288 (1043)
Q Consensus       244 ~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk  288 (1043)
                      ++..++...++++..|++++..+.+++..+..+..+++.....|.
T Consensus        23 ~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~   67 (246)
T PF00769_consen   23 RAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE   67 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555444444444444444444333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=85.40  E-value=90  Score=37.31  Aligned_cols=27  Identities=7%  Similarity=0.158  Sum_probs=14.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          189 TLQTDKEFVKSSYENWLAKYWDIEEQI  215 (1043)
Q Consensus       189 ~LQtEKEal~sqyq~~lekl~eLE~qI  215 (1043)
                      .++++++.+..++.....++..|+..+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~  120 (457)
T TIGR01000        94 NEENQKQLLEQQLDNLKDQKKSLDTLK  120 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.40  E-value=5.7  Score=43.57  Aligned_cols=72  Identities=22%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001620          383 LRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLS  454 (1043)
Q Consensus       383 Lr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLs  454 (1043)
                      ++...++++.++.++..++.+|.++...|..++.++.+++.++..-+..++....-+-.....+...+++|.
T Consensus       133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            344444455555555555555555444444444444444444444444444433333333333333344443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=85.33  E-value=51  Score=34.42  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             ccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHH
Q 001620          348 GSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRT  385 (1043)
Q Consensus       348 a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~  385 (1043)
                      ....+.++=..++.+++.+..++..|......++.+..
T Consensus       136 ~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  136 GLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM  173 (177)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666777777766666666555555554443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.30  E-value=21  Score=39.22  Aligned_cols=94  Identities=20%  Similarity=0.303  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH---------HHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE---------MEEKLL  423 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkE---------lEeel~  423 (1043)
                      .+|..+|..+...+..|+..+...+..|..++.++++|+.++.+++.-..+|.---..+-..|..         .+++..
T Consensus        52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~  131 (251)
T PF11932_consen   52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQE  131 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Confidence            44444455555555555555555555555555555555555555544444444333333333333         223444


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHH
Q 001620          424 RLHDLNRSVEDQNYSFQTHLTEA  446 (1043)
Q Consensus       424 evq~l~esVe~e~~~L~srftEa  446 (1043)
                      ++..+-..+..-..++-.+|..+
T Consensus       132 Rl~~L~~~l~~~dv~~~ek~r~v  154 (251)
T PF11932_consen  132 RLARLRAMLDDADVSLAEKFRRV  154 (251)
T ss_pred             HHHHHHHhhhccCCCHHHHHHHH
Confidence            44444444444434444444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK02119 hypothetical protein; Provisional

Probab=85.27  E-value=3.5  Score=37.77  Aligned_cols=46  Identities=17%  Similarity=0.218  Sum_probs=28.2

Q ss_pred             HHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          360 DEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI  405 (1043)
Q Consensus       360 deLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk  405 (1043)
                      ..+.+||..||.+++-++..|+.|+..+.+.+..+..|...+..|.
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~   50 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA   50 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666666666666666666666665555555543

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=85.18  E-value=86  Score=36.89  Aligned_cols=37  Identities=11%  Similarity=0.038  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001620          257 TQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIG  293 (1043)
Q Consensus       257 ~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~  293 (1043)
                      ........-+..++..+..++..++.++..++.+.+-
T Consensus       167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i  203 (444)
T TIGR03017       167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI  203 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344445566666777777777777777777776543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.97  E-value=10  Score=41.24  Aligned_cols=14  Identities=21%  Similarity=0.477  Sum_probs=5.2

Q ss_pred             hhhchHHHHHHHHH
Q 001620          404 LINDKKDLSSKLVE  417 (1043)
Q Consensus       404 Lk~dRe~L~ekLkE  417 (1043)
                      |..++..|++++..
T Consensus       137 L~~~n~~L~~~l~~  150 (206)
T PRK10884        137 LKEENQKLKNQLIV  150 (206)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=84.65  E-value=57  Score=34.36  Aligned_cols=132  Identities=19%  Similarity=0.235  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhH
Q 001620          242 TLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDV  321 (1043)
Q Consensus       242 al~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~  321 (1043)
                      +..+..++......|.++..+...+..+++.+..+-..++..+......|.+-           .               
T Consensus        22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~y-----------s---------------   75 (159)
T PF05384_consen   22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRY-----------S---------------   75 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----------C---------------
Confidence            33445667777777788888888888888888888888888888777777422           1               


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          322 VRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDK  401 (1043)
Q Consensus       322 ~~l~eEE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl  401 (1043)
                            +.+|.....+-..+...-.........|..+.|.|..++..|...|.-++..+..+..-++=|..-+..+...+
T Consensus        76 ------E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~  149 (159)
T PF05384_consen   76 ------EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQI  149 (159)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                  22222222222222221111111225667777888888888888888888888887777777777776666665


Q ss_pred             HHhh
Q 001620          402 ASLI  405 (1043)
Q Consensus       402 ~~Lk  405 (1043)
                      ..++
T Consensus       150 e~~~  153 (159)
T PF05384_consen  150 EDAQ  153 (159)
T ss_pred             HHHH
Confidence            5543

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=84.63  E-value=4.6  Score=51.03  Aligned_cols=105  Identities=15%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          187 ILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKS  266 (1043)
Q Consensus       187 I~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s  266 (1043)
                      +..|..+.....-.|-.-..++.++++++..++.++..+.....     .............+...+.++.+++.+....
T Consensus        12 F~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~-----~~~~~~~~~~~~~i~~le~~l~~le~~l~e~   86 (759)
T PF01496_consen   12 FRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLP-----EKNDKPDAPKPKEIDELEEELEELEEELREL   86 (759)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCccc-----ccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence            44455555544455666677778888888888888877755521     0011111112224555556666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 001620          267 AEEAKIERKRIKDARDKFESLKHEFIGNEG  296 (1043)
Q Consensus       267 ~eEa~~l~eRI~eaE~elesLk~el~~LEa  296 (1043)
                      .+....+.+++.++.+....|+.....+..
T Consensus        87 ~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~  116 (759)
T PF01496_consen   87 NENLEKLEEELNELEEEKNVLEEEIEFLEE  116 (759)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666666666666666665555544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=84.58  E-value=3.8  Score=36.94  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=21.1

Q ss_pred             HHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          363 VSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN  406 (1043)
Q Consensus       363 vnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~  406 (1043)
                      ..+|.+||.+++-++..|+.|+..+...+..+..|+..+..|..
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~   46 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE   46 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555554444444444444444444433

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=84.49  E-value=51  Score=34.40  Aligned_cols=69  Identities=12%  Similarity=0.291  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEK  421 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEee  421 (1043)
                      ..|...+-.-+.-+...........+.+..++.+|......+..+.+++..++.++..+......+...
T Consensus        66 ~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~  134 (177)
T PF13870_consen   66 LKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQ  134 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444455555555556666666666666666666666666666666666666666666666555543

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.37  E-value=16  Score=39.17  Aligned_cols=113  Identities=19%  Similarity=0.280  Sum_probs=71.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCR  253 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksce  253 (1043)
                      ......+..+-+.+..|+. -.|=.--++.-+.++-.+..+...+.+....+..+      |++..+....++..|..++
T Consensus        65 dd~~~~f~~~~~tl~~LE~-~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~------~~~~~~~~~~~e~~i~~Le  137 (190)
T PF05266_consen   65 DDSRSSFESLMKTLSELEE-HGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKK------IEEKEAELKELESEIKELE  137 (190)
T ss_pred             CCcHHHHHHHHHHHHHHHH-cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHhhhhHHHHHHHHH
Confidence            3333566666666666664 33333344444555666777777777777777666      5555555556677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001620          254 ETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIG  293 (1043)
Q Consensus       254 EtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~  293 (1043)
                      ..|.+|++...............|.++...+..|+.++..
T Consensus       138 ~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~  177 (190)
T PF05266_consen  138 MKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN  177 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776666666666666666666666666666643

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.37  E-value=11  Score=40.85  Aligned_cols=42  Identities=17%  Similarity=0.248  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001620          412 SSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       412 ~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eL  453 (1043)
                      +.++........+++..++.+..++..++.....+..+++.+
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=84.17  E-value=72  Score=36.07  Aligned_cols=173  Identities=17%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREK  337 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rLe~Ld~k  337 (1043)
                      .|...+..+...-..+--|...-+.+...+...|..+.....-+..                        -.|--.|+=.
T Consensus       119 ~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~------------------------qlR~~llDPA  174 (330)
T KOG2991|consen  119 KLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVA------------------------QLRSTLLDPA  174 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHH------------------------HHHHHhhChH
Confidence            3444444455555556666666666666666666655443322100                        2233346666


Q ss_pred             HHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhh-----HHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhc
Q 001620          338 IKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQ-----TALVQRLRTETDELQ-----AQIRTLEDDKASLIND  407 (1043)
Q Consensus       338 InEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsq-----ea~IerLr~EleELq-----eklkeLEeEl~~Lk~d  407 (1043)
                      ||.+|+.-.   --+++-..+|++++|.++.-.=.=-+.     -|.---|..|+++|-     -++.+|+-+|++-++.
T Consensus       175 inl~F~rlK---~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~  251 (330)
T KOG2991|consen  175 INLFFLRLK---GELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQ  251 (330)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhh
Confidence            666665432   124445566666666665543322222     233444555666663     4688888888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhh
Q 001620          408 KKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKL  457 (1043)
Q Consensus       408 Re~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL  457 (1043)
                      +++|+..-.++-+-+.++..-++..++-+--|+..+.+..-+|..|...+
T Consensus       252 seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~  301 (330)
T KOG2991|consen  252 SEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL  301 (330)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777777777777776666666666666777766666666665443

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=84.03  E-value=22  Score=39.20  Aligned_cols=125  Identities=19%  Similarity=0.265  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchHHHH
Q 001620          334 LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDD-KASLINDKKDLS  412 (1043)
Q Consensus       334 Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeE-l~~Lk~dRe~L~  412 (1043)
                      +.+.|+......+...   .=|.-.|.....-...+...+..+-+.-.++..+++.+......++.. ...|...++.|-
T Consensus        11 ~~a~~~~~~dk~EDp~---~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA   87 (225)
T COG1842          11 VKANINELLDKAEDPE---KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA   87 (225)
T ss_pred             HHHHHHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            4455555555444333   334556667777777777777777777777777777777777777744 235666666665


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcccC
Q 001620          413 ----SKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQK  461 (1043)
Q Consensus       413 ----ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s~~  461 (1043)
                          .+...++......+..+..+......|+.....++..|.+++.+...++
T Consensus        88 r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~  140 (225)
T COG1842          88 REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK  140 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                5566677777777777777777778888888888888888877666554

>PRK04406 hypothetical protein; Provisional

Probab=83.97  E-value=5.4  Score=36.84  Aligned_cols=56  Identities=11%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             ccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          350 LTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI  405 (1043)
Q Consensus       350 lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk  405 (1043)
                      .++..+.++|..|..+++=++..|.+++..|-+...+|+.|+.+++-|-+.+.++.
T Consensus         4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406          4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35667888888888888888888888888888888888888888888877776654

>PF15294 Leu_zip: Leucine zipper

Probab=83.93  E-value=8.8  Score=43.45  Aligned_cols=53  Identities=21%  Similarity=0.412  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 001620          375 SQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHD  427 (1043)
Q Consensus       375 sqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq~  427 (1043)
                      -....|.||+.|++.|+.++..++..+...-+++.+|..+|++++......+.
T Consensus       129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~  181 (278)
T PF15294_consen  129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKG  181 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            36778999999999999999999999999999999999999999995555544

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=83.89  E-value=72  Score=34.95  Aligned_cols=194  Identities=16%  Similarity=0.210  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccccchhhHHHHHHHHHHHHHH
Q 001620          178 KEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDE------FGQGIVIEDEEARTLMAAAALKS  251 (1043)
Q Consensus       178 ~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdE------f~~~a~IED~eARal~aE~aIks  251 (1043)
                      .-|+.|+..+.-|..-+ ............+...=.++..++.++..+...      ...+..+++++-+...+...+..
T Consensus        18 ~~i~~l~~al~~L~~~~-~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~   96 (240)
T PF12795_consen   18 ALIQDLQQALSFLDEIK-KQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQE   96 (240)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHH
Confidence            44555555555444222 222222223333333334444444444444221      12344677777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhhHHHH
Q 001620          252 CRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDL  331 (1043)
Q Consensus       252 ceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eEE~rL  331 (1043)
                      .+..|..+................++.++...+..+...+..+....+.+ +             .....-   .-..++
T Consensus        97 ~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~-l-------------~~a~~~---~l~ae~  159 (240)
T PF12795_consen   97 LQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESP-L-------------SEAQRW---LLQAEL  159 (240)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcch-h-------------hHHHHH---HHHHHH
Confidence            77777777777777777777777777777777777777666542222110 0             001101   113445


Q ss_pred             HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHH
Q 001620          332 ESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDE  389 (1043)
Q Consensus       332 e~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleE  389 (1043)
                      ..+..++..+..+-.+.+...+=..-++|.+.-++.-++..+...+..|++.|..-.+
T Consensus       160 ~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae  217 (240)
T PF12795_consen  160 AALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAE  217 (240)
T ss_pred             HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555554444444444445566666667777777777777777766655443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.70  E-value=34  Score=34.41  Aligned_cols=38  Identities=32%  Similarity=0.408  Sum_probs=15.0

Q ss_pred             HHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001620          361 EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLE  398 (1043)
Q Consensus       361 eLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLE  398 (1043)
                      .+...|.-++..+......+.+|..+-+.+...+-.|-
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~   57 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM   57 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444443333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=83.53  E-value=1.9  Score=49.52  Aligned_cols=126  Identities=17%  Similarity=0.253  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          327 DREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN  406 (1043)
Q Consensus       327 EE~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~  406 (1043)
                      -..||..|+..++.+...       |..+..+|-.|...+.++...|.+.+..|..|...+-.++..+..|+..+..|..
T Consensus        33 I~eRLsaLEssv~sL~~S-------Vs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~  105 (326)
T PF04582_consen   33 IRERLSALESSVASLSDS-------VSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSS  105 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence            356677777777776554       4555555555666666666666666666666666666666666666666666666


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhcc
Q 001620          407 DKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKI  459 (1043)
Q Consensus       407 dRe~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~s  459 (1043)
                      .-......|..|...+..+...+..++.-.+++-...+.+...+..|+.-.-+
T Consensus       106 ~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~  158 (326)
T PF04582_consen  106 TLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS  158 (326)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             hhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence            66666666666666666666666666666666667777777777777665544

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=83.41  E-value=72  Score=34.62  Aligned_cols=51  Identities=10%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          240 ARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHE  290 (1043)
Q Consensus       240 ARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~elesLk~e  290 (1043)
                      .-..|+...|..+++.|.+.......+....+.+..++..+...+..+...
T Consensus        24 DP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~   74 (219)
T TIGR02977        24 DPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK   74 (219)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666666666666666666666666666666666666555543

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=83.21  E-value=88  Score=35.42  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhhhh-HHHHHHHHH
Q 001620          258 QMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQD-REDLESLRE  336 (1043)
Q Consensus       258 eLEeere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~eE-E~rLe~Ld~  336 (1043)
                      +|++--+.....+..+...+..+..+|.....++.-|-.-++-   .|-  ...=.|..|..++..++.. ..++.+|..
T Consensus        71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~---EYP--vK~vqIa~L~rqlq~lk~~qqdEldel~e  145 (258)
T PF15397_consen   71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDH---EYP--VKAVQIANLVRQLQQLKDSQQDELDELNE  145 (258)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444444433333321   111  1112556666677666655 556655555


Q ss_pred             HHHH
Q 001620          337 KIKE  340 (1043)
Q Consensus       337 kInE  340 (1043)
                      -+..
T Consensus       146 ~~~~  149 (258)
T PF15397_consen  146 MRQM  149 (258)
T ss_pred             HHHH
Confidence            4443

>PRK02793 phi X174 lysis protein; Provisional

Probab=82.81  E-value=5  Score=36.70  Aligned_cols=43  Identities=16%  Similarity=0.289  Sum_probs=24.8

Q ss_pred             HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL  404 (1043)
Q Consensus       362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L  404 (1043)
                      +.++|..||.+++-|+..|+.|+..+...+..+..|...+..|
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L   48 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL   48 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666655555555555555444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=82.69  E-value=99  Score=35.67  Aligned_cols=229  Identities=15%  Similarity=0.205  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          182 KLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEE  261 (1043)
Q Consensus       182 rLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEe  261 (1043)
                      .|+.+|+.|--|.+.++.+-+.-+.+|++=-.-+.   +....|+..      |-   --..++...+-+|...|.-|-.
T Consensus         3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~K---ekn~~Lqk~------lK---LneE~ltkTi~qy~~QLn~L~a   70 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILK---EKNDDLQKS------LK---LNEETLTKTIFQYNGQLNVLKA   70 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHH------Hh---hhHHHHHHHHHHHhhhHHHHHH
Confidence            47888999999999999888877777754222211   111112111      10   1123445567777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCccccchhhhcccccchhhHhhhh-------hhHHHHHHH
Q 001620          262 EQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA-------QDREDLESL  334 (1043)
Q Consensus       262 ere~s~eEa~~l~eRI~eaE~elesLk~el~~LEaeke~~~l~~~~le~iSeIpeLeee~~~l~-------eEE~rLe~L  334 (1043)
                      +-..+...+.....--++++.++++....++.                   .|.+.+.-..+-+       ...++---|
T Consensus        71 ENt~L~SkLe~EKq~kerLEtEiES~rsRLaa-------------------Ai~d~dqsq~skrdlelafqr~rdEw~~l  131 (305)
T PF14915_consen   71 ENTMLNSKLEKEKQNKERLETEIESYRSRLAA-------------------AIQDHDQSQTSKRDLELAFQRARDEWVRL  131 (305)
T ss_pred             HHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHHHHhhHHHHHHHHHHHhhHHHHH
Confidence            88888888888888888888888888877742                   1222111100000       001111112


Q ss_pred             HHHHHHHHhcCCCccccHHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 001620          335 REKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSK  414 (1043)
Q Consensus       335 d~kInEl~eeke~a~lsV~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ek  414 (1043)
                      ..++          +.-|..+.+..+-|-...+..+..+.+........+..+.++--.+.       .+..+.+-.+-+
T Consensus       132 qdkm----------n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE-------~~QrdL~Qtq~q  194 (305)
T PF14915_consen  132 QDKM----------NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALE-------SVQRDLSQTQCQ  194 (305)
T ss_pred             HHHh----------cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            2222          22344455555555555555555555555555555544444444444       444444555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhhc
Q 001620          415 LVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLK  458 (1043)
Q Consensus       415 LkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLseeL~  458 (1043)
                      +++++....--++.+...-..-++++.++.++.++=-=|+++|.
T Consensus       195 ~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd  238 (305)
T PF14915_consen  195 IKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD  238 (305)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666655655553

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=82.43  E-value=1.3e+02  Score=36.83  Aligned_cols=44  Identities=16%  Similarity=0.329  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH
Q 001620          409 KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDH  452 (1043)
Q Consensus       409 e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~e  452 (1043)
                      .++...|+.+-+-+..-|..++.+..+.++|..++..+...|..
T Consensus       388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~  431 (511)
T PF09787_consen  388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKE  431 (511)
T ss_pred             HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence            34556666666666666667777777777777766666665554

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=82.21  E-value=32  Score=38.95  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHh
Q 001620          328 REDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSK  365 (1043)
Q Consensus       328 E~rLe~Ld~kInEl~eeke~a~lsV~ELaEkIdeLvnK  365 (1043)
                      +.++..+...++.+--    +-+.|.=|+.+.+++.+.
T Consensus       148 ~~dl~e~~~~l~DLes----a~vkV~WLR~~L~Ei~Ea  181 (269)
T PF05278_consen  148 ESDLKEMIATLKDLES----AKVKVDWLRSKLEEILEA  181 (269)
T ss_pred             HHHHHHHHHHHHHHHH----cCcchHHHHHHHHHHHHH
Confidence            3345555555555422    334555555555554444

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=82.16  E-value=12  Score=38.85  Aligned_cols=12  Identities=42%  Similarity=0.584  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHH
Q 001620          330 DLESLREKIKEQ  341 (1043)
Q Consensus       330 rLe~Ld~kInEl  341 (1043)
                      ++..++.+|.++
T Consensus        73 el~~ld~ei~~L   84 (169)
T PF07106_consen   73 ELAELDAEIKEL   84 (169)
T ss_pred             hHHHHHHHHHHH
Confidence            344444444444

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=81.99  E-value=42  Score=39.07  Aligned_cols=89  Identities=17%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             hHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q 001620          365 KVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLH-----------DLNRSVE  433 (1043)
Q Consensus       365 KV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dRe~L~ekLkElEeel~evq-----------~l~esVe  433 (1043)
                      =++.....+-..++.|.+++.|..-++-.+.++..++.+..++...|+.++.++..-..++-           .-+..-+
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ  200 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQ  200 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence            34445555555666666666666666666666666666666666666655555444333332           2233334


Q ss_pred             HHHhhHHHHHHHHHHhHHHH
Q 001620          434 DQNYSFQTHLTEARYNIDHL  453 (1043)
Q Consensus       434 ~e~~~L~srftEa~~~L~eL  453 (1043)
                      ..+..|+++...+-++|..|
T Consensus       201 ~yI~~LEsKVqDLm~EirnL  220 (401)
T PF06785_consen  201 AYIGKLESKVQDLMYEIRNL  220 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444455555444444444

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=81.51  E-value=55  Score=31.95  Aligned_cols=94  Identities=22%  Similarity=0.312  Sum_probs=67.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          189 TLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAE  268 (1043)
Q Consensus       189 ~LQtEKEal~sqyq~~lekl~eLE~qISeaQeeV~~LQdEf~~~a~IED~eARal~aE~aIksceEtL~eLEeere~s~e  268 (1043)
                      +|.+-++.+......+..+-..|+..-..++..+..+ +.|     |.+++++...|......-.....+...++..+..
T Consensus        15 ~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f-~~f-----lken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~   88 (126)
T PF13863_consen   15 ALDTKREEIERREEQLKQREEELEKKEQELEEDVIKF-DKF-----LKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKA   88 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555666666777777777777777 333     8888888888887777777777777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 001620          269 EAKIERKRIKDARDKFESLK  288 (1043)
Q Consensus       269 Ea~~l~eRI~eaE~elesLk  288 (1043)
                      ++..+..+|..++..+..++
T Consensus        89 ~l~~l~~~~~k~e~~l~~~~  108 (126)
T PF13863_consen   89 ELEELKSEISKLEEKLEEYK  108 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887777664

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=81.43  E-value=6.3  Score=35.58  Aligned_cols=51  Identities=25%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          355 MAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI  405 (1043)
Q Consensus       355 LaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk  405 (1043)
                      +.++|..|..|++=++..|...+..|-+...+|+.|+..++.|.+.+..+.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456677777777777777777777777777777777777777777766665

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.34  E-value=13  Score=34.25  Aligned_cols=21  Identities=10%  Similarity=0.371  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHhHHhHHHhhh
Q 001620          354 EMAEKIDEVVSKVVNLETSFS  374 (1043)
Q Consensus       354 ELaEkIdeLvnKV~sLE~~IS  374 (1043)
                      .|.++|.++++.|.=|.-.|.
T Consensus         8 kLE~KiqqAvdTI~LLQmEie   28 (79)
T COG3074           8 KLEAKVQQAIDTITLLQMEIE   28 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344455555554444443333

>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species

Probab=81.21  E-value=35  Score=34.84  Aligned_cols=105  Identities=20%  Similarity=0.313  Sum_probs=56.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHhhhhhhhcccc
Q 001620          174 AEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKE--------------------LQQRVYSLQDEFGQGI  233 (1043)
Q Consensus       174 seAe~EIerLqkeI~~LQtEKEal~sqyq~~lekl~eLE~qISe--------------------aQeeV~~LQdEf~~~a  233 (1043)
                      ..|..||....+.|..+|+.+-....-|-+--..+......+.+                    .|.+|+.++.+     
T Consensus        11 ~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~d-----   85 (136)
T PF11570_consen   11 EAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKD-----   85 (136)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHH-----
Confidence            56667888888888888888877776676666666666666655                    23333333333     


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001620          234 VIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKDARDKF  284 (1043)
Q Consensus       234 ~IED~eARal~aE~aIksceEtL~eLEeere~s~eEa~~l~eRI~eaE~el  284 (1043)
                       |+.-++....+++.+....+.|.-.+.-+..+.+....-..++.+++.++
T Consensus        86 -v~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl  135 (136)
T PF11570_consen   86 -VQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKL  135 (136)
T ss_dssp             -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence             43333333334444444444444444445555555555555554444443

Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=80.63  E-value=4.8  Score=36.98  Aligned_cols=15  Identities=33%  Similarity=0.439  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHhcC
Q 001620          331 LESLREKIKEQLEFG  345 (1043)
Q Consensus       331 Le~Ld~kInEl~eek  345 (1043)
                      |..-+..|+.+..+.
T Consensus         7 l~EKDe~Ia~L~eEG   21 (74)
T PF12329_consen    7 LAEKDEQIAQLMEEG   21 (74)
T ss_pred             HHhHHHHHHHHHHHH
Confidence            444555555555555

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK00295 hypothetical protein; Provisional

Probab=80.56  E-value=7.1  Score=35.35  Aligned_cols=41  Identities=29%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             HhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          364 SKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL  404 (1043)
Q Consensus       364 nKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L  404 (1043)
                      .+|..||.+++-++..|+.|+..+-..+..+..|...+..|
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L   45 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL   45 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555554444444444

>PRK02119 hypothetical protein; Provisional

Probab=80.34  E-value=9.1  Score=35.14  Aligned_cols=54  Identities=15%  Similarity=0.217  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001620          352 VTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLI  405 (1043)
Q Consensus       352 V~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk  405 (1043)
                      +..+.++|..|..|++=.+..|..++..|-+...+|+.|+..++-|-+.+.++.
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            355777888888888888888888888888888888888888887777776654

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=80.24  E-value=41  Score=33.75  Aligned_cols=97  Identities=15%  Similarity=0.323  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch---------------------------
Q 001620          356 AEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDK---------------------------  408 (1043)
Q Consensus       356 aEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~dR---------------------------  408 (1043)
                      ...++++......+...+...+..+..++..+.++...+.+|+.    |....                           
T Consensus         5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~----l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v   80 (140)
T PRK03947          5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEE----LKSKGEGKETLVPIGAGSFVKAKVKDKDKVIV   80 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence            44566667777777777777777777777777777777766652    22110                           


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHh
Q 001620          409 ---------KDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHK  456 (1043)
Q Consensus       409 ---------e~L~ekLkElEeel~evq~l~esVe~e~~~L~srftEa~~~L~eLsee  456 (1043)
                               -.+.+.+.-+++++..+......+...+..++.++.++...+..+..+
T Consensus        81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     156677777777888887778888888777777777777777776543

>PRK02793 phi X174 lysis protein; Provisional

Probab=80.22  E-value=9.1  Score=35.02  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001620          353 TEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLIN  406 (1043)
Q Consensus       353 ~ELaEkIdeLvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~Lk~  406 (1043)
                      .++.++|..|..+++=.+..|.+++..|-+...+|+.|+..++-|-+.+..+..
T Consensus         4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            446677888888888888888888888888888888888777777777766543

>PRK04325 hypothetical protein; Provisional

Probab=80.05  E-value=7.6  Score=35.72  Aligned_cols=43  Identities=19%  Similarity=0.282  Sum_probs=23.9

Q ss_pred             HHHhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001620          362 VVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASL  404 (1043)
Q Consensus       362 LvnKV~sLE~~ISsqea~IerLr~EleELqeklkeLEeEl~~L  404 (1043)
                      +..+|..||.+++-|+..|+.|+..+-..+..+..|...+..|
T Consensus         7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L   49 (74)
T PRK04325          7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL   49 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555555555555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1043
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 83.7 bits (206), Expect = 2e-16
 Identities = 88/608 (14%), Positives = 171/608 (28%), Gaps = 184/608 (30%)

Query: 29  NLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRA-YRALAERYDHIS 87
             +D           +    +   ++             FVEE  R  Y+ L      I 
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQK-------------FVEEVLRINYKFLMSP---IK 99

Query: 88  TELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNLPKKDLKGMITL 147
           TE +          P  +  M  +  D              N+ ++   P   L+  +  
Sbjct: 100 TEQRQ---------PSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQ--PYLKLRQAL-- 144

Query: 148 ANKKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQT--DKEFVKSSYEN-- 203
              +LRP+K         ++  G+  + G        K  + L      +          
Sbjct: 145 --LELRPAK--------NVLIDGVLGS-G--------KTWVALDVCLSYKVQCKMDFKIF 185

Query: 204 WL--AKYWDIEEQIKELQQRVYSLQDEFGQG--------IVIEDEEA--RTLMAAAALK- 250
           WL        E  ++ LQ+ +Y +   +           + I   +A  R L+ +   + 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 251 -------------------SCRETL--TQ----------------MEEEQEKSAEEAKIE 273
                              SC+  L  T+                  +    +    +++
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 274 RKRIKDARDKFESLKHE----------FIG---NEGSKKIPHVKDDSVKAVEESDRSDID 320
              +K    + + L  E           I     +G     + K  +   +     S ++
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 321 VVRTAQDR---EDLESLRE--KIKEQLEFGSSGSLTVTEM--AEKIDEVVSKVVNLETSF 373
           V+  A+ R   + L        I             +  +   + I   V  VVN    +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTI----------LLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 374 SSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVE--MEEKLLRLHDLNRS 431
           S    LV++   +  E    I ++  +    + ++  L   +V+     K     DL   
Sbjct: 415 S----LVEK---QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 432 VEDQNYSFQT---HLTEARY------------NIDHLSHKLKIQKTDEELEISSEN---- 472
             D  Y +     HL    +            +   L  K++   T      S  N    
Sbjct: 468 YLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 473 VEKY--------PLRVELHKEIE------GEDAALDPNDDLKELQSAQLSEEIEVKILAE 518
           ++ Y        P    L   I        E+       DL  L+ A ++E+   + + E
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAED---EAIFE 581

Query: 519 EENKSPAK 526
           E +K   +
Sbjct: 582 EAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.8 bits (175), Expect = 1e-12
 Identities = 93/694 (13%), Positives = 214/694 (30%), Gaps = 229/694 (32%)

Query: 166 LVKSGLSKAEGLKEI----DKLQKQ------ILTLQTD--KEFVKSSYE---NWLAKYWD 210
           + KS LSK E +  I    D +         +L+ Q +  ++FV+        +L     
Sbjct: 41  MPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 211 IEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEA 270
            E++   +  R+Y                             R+ L    +   K     
Sbjct: 100 TEQRQPSMMTRMYI--------------------------EQRDRLYNDNQVFAKY---- 129

Query: 271 KIER-KRIKDARDKFESLK-HEFI---GNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA 325
            + R +     R     L+  + +   G  GS K       +  A++             
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------TWVALD-----------VC 171

Query: 326 QDREDLESLREKIKEQLEFG----SSGSLTVTEMAEKIDEVVSKVVNL----ETSFSSQT 377
                      K++ +++F     +  +          + V+  +  L    + +++S++
Sbjct: 172 LS--------YKVQCKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 378 ALVQRLRTETDELQAQIRTL---EDDKASLI-----NDKK-----DLSSK-LV-----EM 418
                ++     +QA++R L   +  +  L+      + K     +LS K L+     ++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 419 EEKLLRLHDLNRSVEDQNYSFQTHLTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPL 478
            + L      + S++  + +      +       L   L  +  D   E+ + N    P 
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVK-----SLLLKYLDCRPQDLPREVLTTN----PR 328

Query: 479 RVELHKEIEGEDAALDPN--DDLKELQSAQLSEEIE--VKILAEEENKSPAKVQFEKGIE 534
           R+ +   I  E         D+ K +   +L+  IE  + +L   E +      F++   
Sbjct: 329 RLSI---I-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK----MFDR--- 377

Query: 535 GSEGLANIASENLHAEKPDEEFKSSDSIQNEEESTVEIVSIEESKEQEEKLNHGDVPKKT 594
               L+ +   + H             I       + ++  +  K               
Sbjct: 378 ----LS-VFPPSAH-------------I---PTILLSLIWFDVIKSDVM----------- 405

Query: 595 RDVQTEIVNDTREQELTDTPGNQGEVGQNQENDEPGKPVEGSQKQLKEEMQTEVANDTKE 654
                 +VN   +  L +           ++  E    +     +LK +++        E
Sbjct: 406 -----VVVNKLHKYSLVE-----------KQPKESTISIPSIYLELKVKLE-------NE 442

Query: 655 YELTDTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEMF--------LKGMENREKTIL 706
           Y L       + +   Y     P+   ++ +  P + + +        LK +E+ E+  +
Sbjct: 443 YAL------HRSIVDHYNI---PKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPER--M 490

Query: 707 AEYTTVLRNYKEAKKKLDESGVKTRDSNDVAKM--QLEELRSANTEKDE----------- 753
             +  V  +++  ++K+         S  +     QL+  +    + D            
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 754 -----EIQSLRQK-LSILQAAFGEYNNLDYQSEA 781
                E   +  K   +L+ A    +   ++ EA
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFE-EA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 1e-11
 Identities = 98/689 (14%), Positives = 210/689 (30%), Gaps = 205/689 (29%)

Query: 284 FESLKHEFIGNEGSKKI-PH-----VKDDSVKAVEESDRS-----DIDVVRTAQDRED-- 330
           FE+ +H++      K I        V +   K V++  +S     +ID +  ++D     
Sbjct: 9   FETGEHQY----QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 331 ---LESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTET 387
                +L  K +E ++                 + V +V+ +   F     L+  ++TE 
Sbjct: 65  LRLFWTLLSKQEEMVQ-----------------KFVEEVLRINYKF-----LMSPIKTEQ 102

Query: 388 DELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEAR 447
            +     R   + +  L ND +  +   V   +  L+L              +  L E R
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--------------RQALLELR 148

Query: 448 YNIDHLSHKLK-IQKT--------DEELEISSENVEKYPLRVELHKEIEGEDAALDPNDD 498
              + L   +    KT          +++   +  + + L +              P   
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNL-------KNCN--SPETV 198

Query: 499 LKELQSAQLSEEIEVKILAEEENKSPAKVQFEKGIEGSEGLANIASENLHAEKPDEEFKS 558
           L+ LQ   L  +I+    +  ++ S  K++          L       L   KP   +++
Sbjct: 199 LEMLQK--LLYQIDPNWTSRSDHSSNIKLRIH---SIQAEL-----RRLLKSKP---YEN 245

Query: 559 S----DSIQNEE-----------------ESTVEIVSIEESKEQE-EKLNHGDVPKKTRD 596
                 ++QN +                 +   + +S   +     +  +    P + + 
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 597 VQTEIVN----DTREQELTDTPGNQGEVG-------------QNQENDEPGKPVEGSQKQ 639
           +  + ++    D   + LT  P     +              ++   D+    +E S   
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 640 LKEEMQTEVANDTKEY--ELT----DTPGSRQEVAGRYQANDEPRKLAAEQECEPDWKEM 693
           L+         + ++    L+            +      +        + +      ++
Sbjct: 366 LEP-------AEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVI------KSDVMVVVNKL 411

Query: 694 FLKGMENR---EKT-----ILAEYTTVLRNYKEAKKKLDES--GVKTRDSNDVAKMQLEE 743
               +  +   E T     I  E    L N     + + +     KT DS+D+    L++
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 744 ---------LRSANTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATSTRPTDREVEVV 794
                    L+  N E  E +   R               LD+           R +E  
Sbjct: 472 YFYSHIGHHLK--NIEHPERMTLFRMVF------------LDF-----------RFLEQK 506

Query: 795 VIHGEQPQPTSETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEVKDLKNDISKLV 854
           + H         T       I   L++ L F+  +      I   D + + L N I   +
Sbjct: 507 IRH-------DSTAWNASGSILNTLQQ-LKFYKPY------ICDNDPKYERLVNAILDFL 552

Query: 855 SKLEEKQRKQEGSSTARYALKSDGRPLYK 883
            K+EE     + +   R AL ++   +++
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 3e-07
 Identities = 57/409 (13%), Positives = 104/409 (25%), Gaps = 143/409 (34%)

Query: 748  NTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATSTRP--TDREVEVVVIHGEQPQPTS 805
            + E  E     +  LS+ + AF +  N D +      +   +  E++ ++         S
Sbjct: 8    DFETGEHQYQYKDILSVFEDAFVD--NFDCKDVQDMPKSILSKEEIDHII---MSKDAVS 62

Query: 806  ET-----------EEKFRMDIDELLEENLDF-WLRFSASFHQ----IQKFDTEVKDLKND 849
             T           EE  +  ++E+L  N  F          Q     + +  +   L ND
Sbjct: 63   GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 850  IS----------KLVSKLEE---KQRKQEG-----------SSTARYALKS-------DG 878
                        +   KL +   + R  +            +  A     S       D 
Sbjct: 123  NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 879  RPLYKHMGEIQTELTLWIEK----CLLLKEELTSRCSSLSNIQEEITKALKTSAEDDDFK 934
            +  + ++    +  T+ +E        +    TSR    SNI+  I             +
Sbjct: 183  KIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRI----------HSIQ 231

Query: 935  FTSYQAAKFQGEVLNMKQENNKVAEELQAGLDHVKNLQIEVE------KTL--------- 979
                         L    ++      L   L +V+N +          K L         
Sbjct: 232  -----------AELRRLLKSKPYENCLLV-LLNVQNAKA-WNAFNLSCKILLTTRFKQVT 278

Query: 980  -----------SMLGEKFGLSDAKS------------QKLEHSNSRSSVPLRSFIFGV-- 1014
                       S+      L+  +             Q L      ++ P R  I     
Sbjct: 279  DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESI 337

Query: 1015 ----------------KQKKQRSSFFFSMHPALTRK-YNG---FRTGVK 1043
                            K      S    + PA  RK ++    F     
Sbjct: 338  RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 60/364 (16%), Positives = 116/364 (31%), Gaps = 126/364 (34%)

Query: 23  SKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRALAER 82
            K+L+   QDL  +V                         P  +S + E+ R   A  + 
Sbjct: 308 LKYLDCRPQDLPREVL---------------------TTNPRRLSIIAESIRDGLATWDN 346

Query: 83  YDHISTELQNANTTIARVCPEQVP-------------FMDDDDEDPTPRGPKKPPVQTAN 129
           + H++ +     TTI       +              F                    A+
Sbjct: 347 WKHVNCD---KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-----------------AH 386

Query: 130 IP-KV-----PNLPKKDLKGMITLANKKLRPSKSSKKASAAKLVKSG--------LSKAE 175
           IP  +      ++ K D+  ++          K  K +   K  K          L    
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVN---------KLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 176 GLKEIDKLQKQILTLQTDKEFVKSSYENW------LAKYW---------DIE-EQIKELQ 219
            L+    L + I+    D   +  ++++       L +Y+         +IE  +   L 
Sbjct: 438 KLENEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 220 QRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEKSAEEAKIERKRIKD 279
           + V+ L   F +  +  D  A       A  S   TL Q+           K  +  I D
Sbjct: 494 RMVF-LDFRFLEQKIRHDSTAWN-----ASGSILNTLQQL-----------KFYKPYICD 536

Query: 280 ARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIK 339
              K+E L +  +       +P ++++ + +         D++R A   ED E++ E+  
Sbjct: 537 NDPKYERLVNAILDF-----LPKIEENLICS------KYTDLLRIALMAED-EAIFEEAH 584

Query: 340 EQLE 343
           +Q++
Sbjct: 585 KQVQ 588

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.9 bits (158), Expect = 1e-10
 Identities = 40/316 (12%), Positives = 114/316 (36%), Gaps = 29/316 (9%)

Query: 150  KKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILTLQTDKEFVKSSYENWLAK-- 207
            K+L    +        L +   ++ E   E ++++ ++   + + E +    E  + +  
Sbjct: 881  KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE 940

Query: 208  --YWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAALKSCRETLTQMEEEQEK 265
                 ++ + K++QQ++  L+++      +E+EEA          +    + +ME++   
Sbjct: 941  ERSQQLQAEKKKMQQQMLDLEEQ------LEEEEAARQKLQLEKVTADGKIKKMEDDILI 994

Query: 266  SAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDIDVVRTA 325
              ++     K  K   ++   L       E  +K  ++     K        ++ + +  
Sbjct: 995  MEDQNNKLTKERKLLEERVSDLTTNL--AEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 326  QDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRT 385
            + R++LE ++ K++ +                   ++  ++  L+   +   A + +   
Sbjct: 1053 KSRQELEKIKRKLEGESS-----------------DLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 386  ETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTE 445
            E     A++      K + +   ++L S + +++E L          E Q       L  
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 446  ARYNIDHLSHKLKIQK 461
             +  ++        Q+
Sbjct: 1156 LKTELEDTLDTTATQQ 1171

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 44/330 (13%), Positives = 111/330 (33%), Gaps = 47/330 (14%)

Query: 664  RQEVAGRYQANDEPRKLAAEQECEPDWKEMFLKGMENREKTILAEYTTVLRNYKEAKKKL 723
            +  +  + QA  E    A E       K+  L+ + +  +  + E     +  +  KKK+
Sbjct: 894  KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 724  DESGVKTRDSNDVAKMQLEELRSANTEKDEEIQSLRQKLSILQAAFGEYNNLDYQSEATS 783
             +  +   +  +  +   ++L+      D +I+ +   + I++                 
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME----------------- 996

Query: 784  TRPTDREVEVVVIHGEQPQPTSETEEKFRMDIDELLEENLDFWLRFSASFHQIQKFDTEV 843
                                  +   K   +   L E   D     +    + +      
Sbjct: 997  ----------------------DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 844  KDLKNDISKLVSKLEEKQRKQEGSSTARYALKSDGRPLYKHMGEIQTELTLWIEKCLLLK 903
               ++ IS+L  +L+++++ ++     +  L+ +   L++ + E+Q ++     +    +
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE 1094

Query: 904  EELTSRCSSLSNIQEEITKALKTSAE--------DDDFKFTSYQAAKFQGEVLNMKQENN 955
            EEL +  + L +   +   ALK   E         +D +       K + +  ++ +E  
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 956  KVAEELQAGLDHVKNLQIEVEKTLSMLGEK 985
             +  EL+  LD     Q           +K
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 8e-07
 Identities = 43/287 (14%), Positives = 106/287 (36%), Gaps = 18/287 (6%)

Query: 323  RTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQR 382
               + +E  +    ++KE  +  +        + EK+          E       A  Q 
Sbjct: 865  ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQE 924

Query: 383  LRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTH 442
            L     E++A+I   E+    L  +KK +  +++++EE+L       + ++ +  +    
Sbjct: 925  LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984

Query: 443  LTEARYNIDHLSHKLKIQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKEL 502
            + +           ++      E + +    E+  L   +           +   +L +L
Sbjct: 985  IKK-----------MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 503  QSAQLSEEIEVKILAEEENKSPAKVQFEKGIEGSEGLANIASENLHAEKPDEEFKSSDSI 562
            ++   S   E+++  ++E K  ++ + EK     EG ++   E +   +       +   
Sbjct: 1034 KNKHESMISELEVRLKKEEK--SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 563  QNEEESTVEIVSIEESKEQEEKLNHGDVPKKTRDVQTEIVNDTREQE 609
            + EEE    +  +E+   Q+         KK R++++ I +   + E
Sbjct: 1092 KKEEELQAALARLEDETSQKNNAL-----KKIRELESHISDLQEDLE 1133

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.9 bits (101), Expect = 6e-04
 Identities = 45/278 (16%), Positives = 104/278 (37%), Gaps = 24/278 (8%)

Query: 19   RTKQSKWLEQNLQDLEEKVAYTLKLIEEDGDSFAKRAEMYYKKRPELISFVEEAYRAYRA 78
               + + LE+ L ++E +    ++  EE         +   ++  +L   +EE   A + 
Sbjct: 918  LAAKKQELEEILHEMEAR----IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 79   LAERYDHISTELQNANTTIARVCPEQVPFMDDDDEDPTPRGPKKPPVQTANIPKVPNLPK 138
            L         +++     I  +  +Q   +  + +    R             K  NL K
Sbjct: 974  LQLEKVTADGKIKKMEDDILIME-DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 139  ---------KDLKGMITLANKKLRPSKSSKKASAAKLVKSGLSKAEGLKEIDKLQKQILT 189
                      +L+  +    K  +  +  K+    +        AE   +I +L+ Q+  
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 190  LQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEARTLMAAAAL 249
             + + +   +  E+  ++  +  ++I+EL+  +  LQ++      +E E+A    A    
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQED------LESEKAARNKAEKQK 1146

Query: 250  KSCRETL----TQMEEEQEKSAEEAKIERKRIKDARDK 283
            +   E L    T++E+  + +A + ++     KD  DK
Sbjct: 1147 RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 38/267 (14%), Positives = 102/267 (38%), Gaps = 21/267 (7%)

Query: 182  KLQKQILTLQTDKEFVKSSYENWLAKYWDIEEQIKELQQRVYSLQDEFGQGIVIEDEEAR 241
             ++K+   ++     +++    +L +     +    L++    +  +  +G +      R
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVR----NKYQMMLREHKSIIIQKHVRGWLARVHYHR 885

Query: 242  TLMAAAALKSC-RETLTQMEEEQEKSAEEAKIERKRIKDARDKFESLKHEFIGNEGSKKI 300
            TL A   L+ C R  + + E ++ K         +R K      E+   +       +  
Sbjct: 886  TLKAIVYLQCCYRRMMAKRELKKLKIEAR---SVERYKKLHIGLENKIMQLQRKIDEQNK 942

Query: 301  PHVKDDSVKAVEESDRSDIDVVRTAQDREDLESLREKIKEQLEFGSSGSLTVTEMAEKID 360
             +          E   S      T + R D+E LR   +E     +     V  + E+I 
Sbjct: 943  EYKSLLEKMNNLEITYST----ETEKLRSDVERLRMSEEEAKNATNR----VLSLQEEIA 994

Query: 361  EVVSKVVNLETSFSSQTALVQRLRTETDELQAQIRTLEDDKASLINDKKDLSSKLVEMEE 420
            ++  ++   +T   +      + + ET++L ++   L++    L  +K++L+ ++ +  +
Sbjct: 995  KLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQAK 1051

Query: 421  KLLRLHDLNRSVEDQNYSFQTHLTEAR 447
            ++     + + + ++    +  L + R
Sbjct: 1052 EI--TETMEKKLVEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 41/262 (15%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 275  KRIKDARDKFESLKHEFIGNEGSKKIPHVKDDSVKAVEESDRSDID-VVRTAQDREDLES 333
            +R+   R +++ ++   I  +   +   V++     + E     I   VR    R     
Sbjct: 826  QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885

Query: 334  LREKIKEQLEFGSSGSLTVTEMAEKIDEVVSKVVNLETSFSSQTALVQRLRTETDELQAQ 393
              + I   L+      +   E+ +   E          S      L   L  +  +LQ +
Sbjct: 886  TLKAI-VYLQCCYRRMMAKRELKKLKIE--------ARSVERYKKLHIGLENKIMQLQRK 936

Query: 394  I-------RTLEDDKASLINDKKDLSSKLVEMEEKLLRLHDLNRSVEDQNYSFQTHLTEA 446
            I       ++L +   +L       + KL    E+L    +  ++  ++  S Q  + + 
Sbjct: 937  IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996

Query: 447  RYNIDHLSHKLK-----IQKTDEELEISSENVEKYPLRVELHKEIEGEDAALDPNDDLKE 501
            R  +     + K       K   E E     +++    ++  KE E      D   ++ E
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE-ELNRRIHDQAKEITE 1055

Query: 502  LQSAQLSEEIEVKILAEEENKS 523
                +L EE +   L   + + 
Sbjct: 1056 TMEKKLVEETKQLELDLNDERL 1077

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00