Citrus Sinensis ID: 001640

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------104
MASSQVEIVSSSPFGCVLKDHNRRDGCRERNARAAAFQKNLKELVRDHFQNCITVSADDDDENSNANSHKRVGSWVAKEEGANGNEQNHNRNLRFLSSNNNGKKKRTANDDDYGYGSSILSSRQSRILDRWAAKQAREMVSTIEKQSQEAELLASSASASSSSNPRKESLQSLQNPPAESEASTAAGNLGASSLVQMWERRLNRSNSLNNTLNPVSTSGRTSSGVSNNDSEASRASEMGDSADEKDEARTYNEDSFVDWESQSDKTARSEPPTRRYSDAGESEKVRIADIIKRLTNASDDVDDHETGTSQCESPSRERRHLPVLDQAAPREAQRENRSFSRVICSPKIRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGMATQDQQLSLASGSRSFNRLSQRSAIRHLRDKFSPAANHGVTAQNEATTSRNPHVEMENNTVHLKDSSNASGLREVGQLQEATTAERMSAASEDNSVSQKSEEHQKEAKSKTDATQKGTKMHTTSDHLKEATPETDVTQKGLNMDTTSDHQKEASVKADAPQKGLNMVTTSDHHKEANLKTDVKEKGLNKETTSLEPRGTAEMMTSLDGRGIRSGIAEIQEANTHGKSQPTASFDGQNANEMADEAEEQETNVQQQLFVGLQENAETTASLNDWDEKLAEEEEEETYLQDQFPETNYDWISEISRPRSYWEDRRQTWYREMLNSSSQNEEIRQLLERRRVSTFLSSDFRDRMDQLMTTRVERQTELEAYQEEEEEEMSQERVGQLLLAHLQRHRHSAASQEGEQAEEGDQVGQVAEPLVVEEEEQEPEHREEDEEQEEEEDEPDEEQRSPTSPLFHEASDDFDQSSPSVQMTSPSTTQTWSYQDHEVGDESDPVASTSSPQPLPAQAYYQDSRQSSSSTNHISIETELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS
ccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHcccHHHHccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHcccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHcHHcHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccccEEEccccccccHHHHHHHHHcccccccccccHHHHHHHcccc
ccccEEEEEccccccHHHcccccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHcccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHccccccccHHHHHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccHccHHHccccccccccccHHEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHcccHHccccccccHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHcccHccHHHHHHHHHHHcccccccHccccccHHHcccccccccccHHHccccccccccHHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEcccEHcHHHHHHHHHHccccccccccHHHHHHHHHccc
MASSQVEIvssspfgcvlkdhnrrdgcRERNARAAAFQKNLKELVRDHFQNCitvsaddddensnanshkrvgswvakeegangneqnhnrnlrflssnnngkkkrtandddygygssilSSRQSRILDRWAAKQAREMVSTIEKQSQEAELLASsasassssnprkeslqslqnppaeseastaagnlGASSLVQMWERRLNrsnslnntlnpvstsgrtssgvsnndseasrasemgdsadekdeartynedsfvdwesqsdktarsepptrrysdagesEKVRIADIIKRLtnasddvddhetgtsqcespsrerrhlpvldqaapreaqrenrsfsrvicspkiRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGMATQDQQLSLASGSRSFNRLSQRSAIRHLRdkfspaanhgvtaqneattsrnphvemenntvhlkdssnasglrevgqlQEATTAERMsaasednsvsqksEEHQKEAKsktdatqkgtkmhttsdhlkeatpetdvtqkglnmdttsdhqkeasvkadapqkglnmvttsdhhkeanlktdvkekglnkettsleprgtaemmtsldgrgiRSGIAEIQEanthgksqptasfdgqnaneMADEAEEQETNVQQQLFVGLQENAETTASLNDWDEKLAEEEEEEtylqdqfpetnydwiseisrprsywEDRRQTWYREMLNSSSQNEEIRQLLERRRVSTFLSSDFRDRMDQLMTTRVERQTELEAYQEEEEEEMSQERVGQLLLAHLQRHrhsaasqegeqaeegdqvgqvaeplvveeeeqepehreedeeqeeeedepdeeqrsptsplfheasddfdqsspsvqmtspsttqtwsyqdhevgdesdpvastsspqplpaqayyqdsrqsssstnhisiETELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHqsnqqevhpvqgmgnnslygapkkrsccicyEMQVDSLLYRcghmctclkcahelqwssgkcpicrapiDDVVRAFMDS
massqveivssspfgcvlkdhnrrdgCRERNARAAAFQKNLKELVRDHFQNCITVsaddddensnanSHKRVGSWVAKEEgangneqnhnrnlrflssnnngkkkrtandddygygssilssrqsRILDRWAAKQAREMVSTIEKQSQEAELLASsasassssnprKESLQSLQNPPAESEASTAAGNLGASSLVQMWERRLNRsnslnntlnpvstsgrtssgvsnndseasrasemgdsadekdeartynedsfvdwesqsdktarsepptrrysdagesekvRIADIIKRltnasddvddhetgtsqcespsrerrhlpvldqaapreaqrenrsfsrvicspkirGRQAFADLLMQLERDRHRELDALAerqavsrfthrgRIQAMLRLRFLHRGMATQDQQlslasgsrsfNRLSQRSAIRHLRDkfspaanhgvtaqneattsrnphvEMENNTVhlkdssnasglREVGQLQEATTAErmsaasednsvsqkseehqkeaksktdatqkgtkmhttsdhlkeatpetdvtqkglnMDTTSDHQkeasvkadapqkglnmvttsdhhkeanlktdvkekglnkettsleprgtaemmtslDGRGIRSGIAEIQEANTHGKSQPTASFDGQNANEMADEAEEQETNVQQQLFVGLQENAETTASLNDWDEKLAEEEEEetylqdqfpetnydwiseisrprsyWEDRRQTWYREmlnsssqneEIRQLLerrrvstflssdfrdrmdQLMTTRVERQTELEAYQEEEEEEMSQERVGQLLLAHLQRHRHSAASqegeqaeegdqvgQVAEPLVveeeeqepehreedeeqeeeedepdeeqrspTSPLFHEASDDFDQSSPSVQMTSPSTTQTWSYQDHEVGDESDPVASTSSPQPLPAQAYYQdsrqsssstnhISIETELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHQsnqqevhpvqgMGNNSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS
MASSQVEIVSSSPFGCVLKDHNRRDGCRERNARAAAFQKNLKELVRDHFQNCITVsaddddensnansHKRVGSWVAKEEGANGNEQnhnrnlrflssnnnGKKKRTANDDDYGYGssilssrqsrilDRWAAKQAREMVSTIEKqsqeaellassasassssNPRKESLQSLQNPPAESEASTAAGNLGASSLVQMWErrlnrsnslnntlnPvstsgrtssgvsnnDSEASRASEMGDSADEKDEARTYNEDSFVDWESQSDKTARSEPPTRRYSDAGESEKVRIADIIKRLTNASDDVDDHETGTSQCESPSRERRHLPVLDQAAPREAQRENRSFSRVICSPKIRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGMATQDQQLSLASGSRSFNRLSQRSAIRHLRDKFSPAANHGVTAQNEATTSRNPHVEMENNTVHLKDSSNASGLREVGQLQEATTAERMSAASEDNSVSQKSEEHQKEAKSKTDATQKGTKMHTTSDHLKEATPETDVTQKGLNMDTTSDHQKEASVKADAPQKGLNMVTTSDHHKEANLKTDVKEKGLNKETTSLEPRGTAEMMTSLDGRGIRSGIAEIQEANTHGKSQPTASFDGQNANEMADEAEEQETNVQQQLFVGLQENAETTASLNDWDEKLAeeeeeeTYLQDQFPETNYDWISEISRPRSYWEDRRQTWYREMLNSSSQNEEIRQLLERRRVSTFLSSDFRDRMDQLMTTRVerqteleayqeeeeeemsqeRVGqlllahlqrhrhsaasqegeqaeegdqvgqvAEPLVVeeeeqepehreedeeqeeeedepdeeqrSPTSPLFHEASDDFDQSSPSVQMTSPSTTQTWSYQDHEVGDESDPVASTSSPQPLPAQAYYQDSRQSSSSTNHISIETELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS
*************FGCVLK**************AAAFQKNLKELVRDHFQNCITV**********************************************************************************************************************************************************************************************************************************************************************************************VICSPKIRGRQAFADLLMQLER*****LDALAERQAVSRFTHRGRIQAMLRLRFLHRG**************************************************************************************************************************************************************************************************************************************************************************************************QFPETNYDWISEISRPRSYWEDRRQTWYRE**********************************************************************************************************************************************************************************************************SIETELIYDLRGQIE*****************************************LYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAF***
************PFGCVL*********************NLKELVRDHFQ**********************************************************************************************************************************************************************************************************************************************DI***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLRG****************************************************SCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM**
**********SSPFGCVLKDHNRRDGCRERNARAAAFQKNLKELVRDHFQNCITVSADDDDENSNANSHKRVGSWVAKEEGANGNEQNHNRNLRFLSSNNNGKKKRTANDDDYGYGSSILSSRQSRILDRW*******************************************************GNLGASSLVQMWERRLNRSNSLNNTLNP************************************YNEDSFVD***********************SEKVRIADIIKRLTNAS********************RHLPVLDQAA**********FSRVICSPKIRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGMATQDQQLSLASGSRSFNRLSQRSAIRHLRDKFSPAANHGVTAQNEATTSRNPHVEMENNTVHLKDSSNASGLREVGQLQ***********************************************LKEATPETDVTQKGLNMDT*************APQKGLNMVTTSDHHKEANLKTDVKEKGLNKETTSLEPRGTAEMMTSLDGRGIRSGIAEIQE********PTASFDGQNANE************QQQLFVGLQENAETTASLNDWDEKL***********DQFPETNYDWISEISRPRSYWEDRRQTWYREMLNSSSQNEEIRQLLERRRVSTFLSSDFRDRMDQLMTTRVERQTELE**************VGQLLLAHL*********************GQVAEPLV********************************SPLFHEAS*******************************************LPAQ*************NHISIETELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS
*******IVSSSPFGCVLKDHNRRDGCRERNARAAAFQKNLKELVRDHFQNCITVSA********************************NR***FL************************SSRQSRILDRWAAKQAREMVSTIEKQSQEAELLASSA****************************************WE*R***********************************************************************************VRIAD******************************HLPVLDQAAPR***************PKIRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGM******************************KF*****************************************************************************************************************************************************************************************************************************************************************QFPETNYDWISEISRPRSYWEDRRQTWYREMLNSSSQNEEIRQLLERRRVSTFLSSDFRDRMDQLMTTRVERQTE************SQERVGQLLLAHLQRHR******************************************************************************************************************************HISIETELIYDLRGQIEQLHREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQG**NNSLY**PKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSQVEIVSSSPFGCVLKDHNRRDGCRERNARAAAFQKNLKELVRDHFQNCITVSADDDDENSNANSHKRVGSWVAKEEGANGNEQNHNRNLRFLSSNNNGKKKRTANDDDYGYGSSILSSRQSRILDRWAxxxxxxxxxxxxxxxxxxxxxASSASASSSSNPRKESLQSLQNPPAESEASTAAGNLGASSLVQMWERRLNRSNSLNNTLNPVSTSGRTSSGVSNNDSEASRASEMGDSADEKDEARTYNEDSFVDWESQSDKTARSEPPTRRYSDAGESEKVRIADIIKRLTNASDDVDDHETGTSQCESPSRERRHLPVLDQAAPREAQRENRSFSRVICSPKIRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGMATQDQQLSLASGSRSFNRLSQRSAIRHLRDKFSPAANHGVTAQNEATTSRNPHVEMENNTVHLKDSSNASGLREVGQLQEATTAERMSAASEDNSVSQKSEEHQKEAKSKTDATQKGTKMHTTSDHLKEATPETDVTQKGLNMDTTSDHQKEASVKADAPQKGLNMVTTSDHHKEANLKTDVKEKGLNKETTSLEPRGTAEMMTSLDGRGIRSGIAEIQEANTHGKSQPTASFDxxxxxxxxxxxxxxxxxxxxxLFVGLQExxxxxxxxxxxxxxxxxxxxxxxxxxxxFPETNYDWISEISRPRSYWEDRRQTWYREMLNSSSQNEEIRQLLERRRVSTFLSSDFRDRxxxxxxxxxxxxxxxxxxxxxEEEEMSQERVGQLLLAHLQRHRHSAASQEGEQAEEGDQVGQVAEPLVVEEEEQEPEHREEDEEQEEEEDEPDEEQRSPTSPLFHEASDDFDQSSPSVQMTSPSTTQTWSYQDHEVGDESDPVASTSSPQPLPAQAYYQDSRQSSSSTNHISIETELxxxxxxxxxxxxxxxxxxxxxVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1039 2.2.26 [Sep-21-2011]
P29503754 Protein neuralized OS=Dro yes no 0.047 0.064 0.566 2e-12
Q24746747 Protein neuralized OS=Dro N/A no 0.047 0.065 0.566 3e-12
O76050574 Neuralized-like protein 1 yes no 0.051 0.092 0.462 4e-09
Q923S6574 Neuralized-like protein 1 yes no 0.051 0.092 0.462 4e-09
A8MQ27555 E3 ubiquitin-protein liga no no 0.051 0.097 0.418 3e-08
Q0MW30546 E3 ubiquitin-protein liga no no 0.048 0.091 0.431 4e-08
Q84ME1378 Probable E3 ubiquitin-pro no no 0.052 0.145 0.4 1e-06
Q9LYW5337 Probable E3 ubiquitin-pro no no 0.126 0.388 0.231 1e-06
Q24306438 Apoptosis 1 inhibitor OS= no no 0.050 0.118 0.392 1e-06
Q7XI08513 Probable E3 ubiquitin-pro no no 0.071 0.144 0.310 3e-06
>sp|P29503|NEUR_DROME Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2 Back     alignment and function desciption
 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 4/53 (7%)

Query: 987  CCICYEMQVDSLLYRCGHMCTCLKCAHELQW---SSGKCPICRAPIDDVVRAF 1036
            C ICYE  +DS+LY CGHMC C  CA E QW     G+CP+CRA I DV+R +
Sbjct: 701  CTICYENPIDSVLYMCGHMCMCYDCAIE-QWRGVGGGQCPLCRAVIRDVIRTY 752
Involved in neurogenesis. Interacts with other neurogenic proteins in the specification of the neuroblast versus epidermoblast cell fate.
Drosophila melanogaster (taxid: 7227)
>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1 Back     alignment and function description
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1 Back     alignment and function description
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1 Back     alignment and function description
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1 SV=1 Back     alignment and function description
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1 SV=1 Back     alignment and function description
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LYW5|LUL1_ARATH Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana GN=LUL1 PE=1 SV=1 Back     alignment and function description
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2 Back     alignment and function description
>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1039
356558215917 PREDICTED: uncharacterized protein LOC10 0.860 0.974 0.390 1e-144
356532593920 PREDICTED: uncharacterized protein LOC10 0.852 0.963 0.385 1e-142
224057906923 predicted protein [Populus trichocarpa] 0.826 0.930 0.376 1e-124
224072402816 predicted protein [Populus trichocarpa] 0.328 0.417 0.523 3e-90
449434192810 PREDICTED: uncharacterized protein LOC10 0.315 0.404 0.454 9e-83
225424962790 PREDICTED: uncharacterized protein LOC10 0.297 0.391 0.464 2e-81
255578509740 ubiquitin-protein ligase, putative [Rici 0.424 0.595 0.437 2e-75
147810477757 hypothetical protein VITISV_020220 [Viti 0.412 0.566 0.396 2e-73
297738182753 unnamed protein product [Vitis vinifera] 0.413 0.571 0.382 2e-72
42562421730 RING/U-box domain-containing protein [Ar 0.263 0.375 0.356 6e-43
>gi|356558215|ref|XP_003547403.1| PREDICTED: uncharacterized protein LOC100796627 [Glycine max] Back     alignment and taxonomy information
 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 414/1060 (39%), Positives = 554/1060 (52%), Gaps = 166/1060 (15%)

Query: 1    MASSQVEIVSSSPFGCVLKDHNRRDGCRERNARA------AAFQKNLKELVRDHFQNCIT 54
            MASSQVEI SSSPFGCVL+D N R+ C   ++        A FQ+N+K  V D    C+ 
Sbjct: 1    MASSQVEIASSSPFGCVLRDRNHREACSRESSNVKGTHHHATFQRNMKNFVMD-LNTCMV 59

Query: 55   VSADDDDENSNANSHKRVGSWVAKEEGANGNEQNHNRNLRFLSSNNNGKKKRTANDDDYG 114
            VS+D     +  NS          +  A  N  +H   LR   +N         N++   
Sbjct: 60   VSSDSTTNENENNSSSSN----NNQRKAPKN--SHLERLRITPANPFINNNNINNNETSL 113

Query: 115  YGSSILSSRQSRILDRWAAKQAREMVSTIEKQSQEAELLASSASASSSSNPRKESLQSLQ 174
              +S++S R SR+LDRWA +Q  +MVS +E    EAELL         S    + L    
Sbjct: 114  --ASLISPRHSRLLDRWATRQGCQMVSNLEN---EAELL---------SMDDNDMLPRTS 159

Query: 175  NPPAESEASTAAGNLG-ASSLVQMWERRLNRSN-SLNNTLNPVSTSGRTSSGVSNNDSEA 232
            +   E ++S+   NLG ASSLVQ+WE+RLN+S  S  NT  P    G TSS ++ N +  
Sbjct: 160  SSSEEEDSSSETQNLGGASSLVQIWEKRLNQSGVSKPNT--PRERIGSTSSSINENANAF 217

Query: 233  SRASEMGDSADEK-DEARTYNEDS-FVDWESQSDKTARSEPPTRRYSDAGESEKVRIADI 290
            S  +    + +E+  +  + NE+S F DWES    +  S  P+ R     E ++VR+ADI
Sbjct: 218  SSENANALTGEEQCFDGPSGNEESLFPDWES----SDHSLSPSGR----SERDRVRVADI 269

Query: 291  IKRLT----------NASDDVDDHETGTSQCESPSRERRHLPVLDQAAPREAQRENRSFS 340
            IK+LT          + +DD +    G+S   SP RER      +    ++ Q+ +    
Sbjct: 270  IKKLTATNPNQSPTPSFADDNEHEGYGSSVTGSPCRER------ECGNQQQQQQHSEQNQ 323

Query: 341  RVICSPKIRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGM 400
            RV CS +IRGR+A+ DLL Q++ DRH EL+ L ER AVS+F  RGRIQA+LRL+ L RG 
Sbjct: 324  RVNCSLRIRGRRAYNDLLAQMKNDRHGELNNLVERGAVSKFPQRGRIQALLRLKLLQRGT 383

Query: 401  ATQDQQLSLASGSRSFNRLSQRSAIRHLRDKFSPAANHGVTAQNEATTSRNPHVEMENNT 460
            A  D     ++ S   NR  Q SAI  LR++FS  A      Q E    ++P     N T
Sbjct: 384  AANDSTRQKSTASEVNNRQPQGSAIMQLRERFSSGAELRTAVQAEVANPKSPQRGTANKT 443

Query: 461  VHLKDSSNASGLREVGQLQEATTAERMSAASEDNSVSQKSEEHQKEAKSKTDATQKGTKM 520
              L +S+    L                                    SK  +  KG   
Sbjct: 444  TQLDNSATTDHL------------------------------------SKDTSNNKG--- 464

Query: 521  HTTSDHLKEATPETDVTQKGLNMDTTSDHQKEASVKADAPQKGLNMVTTSDHH-KEANLK 579
            H  ++H  E+T                  QK AS             T  DH+ +EA+  
Sbjct: 465  HGNANHATEST------------------QKSAS------------QTRIDHNTEEAHPS 494

Query: 580  TDVKEKGLNKETTSLEPRGTAEMMTSLDGRGIRSGIAEIQEANTHGKSQPTASFDGQNAN 639
            +DVK +     +  + P   ++  T      I S + EI        +Q  A     N  
Sbjct: 495  SDVKVQETRPSSDVMTPHNDSQETTEASSSTIGSNLNEIMADRAETSNQQNAMAKSSNDE 554

Query: 640  EMADEAEEQETNVQQQLFVGLQENAETTASLNDWDEKLAEEEEEETYLQDQFPETNYDWI 699
             + +E E    + Q+      +E  E  ++ N  DE   E EE E   Q+ + ETNYDWI
Sbjct: 555  TLDEEVE----SYQKYAETSYEEKVEEASNHNYGDEMEEEVEEIE---QNCY-ETNYDWI 606

Query: 700  SEISRPRSYWEDRRQTWYREMLNSSSQNEEIRQLLERRRVSTFLSSDFRDRMDQLMTTRV 759
            SEISRPRSYWE+RRQ WYREML + SQNE+IR+LLERR VS+FLSSDFRDRMD+LM +  
Sbjct: 607  SEISRPRSYWEERRQAWYREMLETGSQNEDIRRLLERRTVSSFLSSDFRDRMDRLMESHR 666

Query: 760  ERQTELEAYQEEEEEEMSQERVGQLLLAHLQRHRHSA-ASQEGEQAEEGDQVGQVAEPLV 818
              QT L + QE EE+          L+A LQ   HS  ASQ+G  A E ++         
Sbjct: 667  GTQTHLVSSQEREEDSHG-------LMAFLQARLHSTIASQDGRDAREEEE--------- 710

Query: 819  VEEEEQEPEHREEDEEQEEEEDEPDEEQRSPTSPLFHEASDDFDQSSPSVQMTSPSTTQT 878
             E   Q  E  EE+EE   +E E + E+ S  S L+HEA D  + SS            +
Sbjct: 711  EESRNQNEEEEEEEEEDNADEQEQEHEEESLISGLYHEAGDYSNGSS------------S 758

Query: 879  WSYQDHEVGDESDPVASTSSPQPLPAQAYYQDSRQSSSSTNHISIETELIYDLRGQIEQL 938
            WSY+D E G + D V ST SPQP  +Q++Y +SR  S STNH SIE ELIYDLRG +E L
Sbjct: 759  WSYRDIEAGYDFDRVVST-SPQPYQSQSFYPESRH-SPSTNHHSIEMELIYDLRGHMELL 816

Query: 939  HREMSELRKSVQSCVDMQVKLHQSNQQEVHPVQGMGNNSLYGAPKKRSCCICYEMQVDSL 998
            + E+SELRKS++ C++MQ++L QS +QEV  V+     S    PKK +CCICYEM+VDS+
Sbjct: 817  YNEISELRKSIKGCMEMQIELQQSMKQEVQTVKKEEKKSNNRTPKKGNCCICYEMKVDSV 876

Query: 999  LYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038
            LYRCGHMCTCLKCA+ELQW+SGKCPICRA I+DVVR ++D
Sbjct: 877  LYRCGHMCTCLKCANELQWNSGKCPICRAKIEDVVRVYVD 916

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356532593|ref|XP_003534856.1| PREDICTED: uncharacterized protein LOC100796661 [Glycine max] Back     alignment and taxonomy information
>gi|224057906|ref|XP_002299383.1| predicted protein [Populus trichocarpa] gi|222846641|gb|EEE84188.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224072402|ref|XP_002303718.1| predicted protein [Populus trichocarpa] gi|222841150|gb|EEE78697.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434192|ref|XP_004134880.1| PREDICTED: uncharacterized protein LOC101206495 [Cucumis sativus] gi|449515595|ref|XP_004164834.1| PREDICTED: uncharacterized protein LOC101223799 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225424962|ref|XP_002264993.1| PREDICTED: uncharacterized protein LOC100253105 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578509|ref|XP_002530118.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223530372|gb|EEF32262.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147810477|emb|CAN63223.1| hypothetical protein VITISV_020220 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738182|emb|CBI27383.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|42562421|ref|NP_174371.2| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|34849887|gb|AAQ82840.1| At1g30860 [Arabidopsis thaliana] gi|51969794|dbj|BAD43589.1| hypothetical protein [Arabidopsis thaliana] gi|51969866|dbj|BAD43625.1| hypothetical protein [Arabidopsis thaliana] gi|51970362|dbj|BAD43873.1| hypothetical protein [Arabidopsis thaliana] gi|51970408|dbj|BAD43896.1| hypothetical protein [Arabidopsis thaliana] gi|332193165|gb|AEE31286.1| RING/U-box domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1039
TAIR|locus:2196954730 AT1G30860 [Arabidopsis thalian 0.334 0.476 0.317 3.6e-60
TAIR|locus:2120377 1188 AT4G20160 [Arabidopsis thalian 0.378 0.330 0.278 5.3e-48
TAIR|locus:2044752652 EDA18 "embryo sac development 0.084 0.134 0.558 1.8e-46
TAIR|locus:2184407863 AT5G04460 [Arabidopsis thalian 0.153 0.185 0.382 6e-45
TAIR|locus:2156339662 AT5G44690 [Arabidopsis thalian 0.276 0.433 0.279 9.4e-23
WB|WBGene00017342617 F10D7.5 [Caenorhabditis elegan 0.139 0.235 0.300 5.3e-09
FB|FBgn0036203 1514 Muc68D "Mucin 68D" [Drosophila 0.649 0.445 0.174 1.8e-05
UNIPROTKB|Q24746747 neur "Protein neuralized" [Dro 0.047 0.065 0.566 3.3e-08
FB|FBgn0002932754 neur "neuralized" [Drosophila 0.047 0.064 0.566 4.1e-08
UNIPROTKB|F1MSJ5574 NEURL "Uncharacterized protein 0.057 0.104 0.442 5.7e-08
TAIR|locus:2196954 AT1G30860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 372 (136.0 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
 Identities = 119/375 (31%), Positives = 190/375 (50%)

Query:   230 SEASRASEMGDSADEKDEARTYNEDSFVDWESQ-SDKTARSEPPTRRY-SDAGESEKVRI 287
             S AS +S        +D     +E S +D +S+ +D+T   E  +    SD+GES+  R+
Sbjct:    98 STASSSSRSDSGVSVQDSG--LSESSSIDGDSEIADRTVEIESRSHGLVSDSGESKWGRV 155

Query:   288 ADIIKRLTNASDDVDDHETGTSQCESPSRERRHLPVLDQAAP--REAQRENRSFSRVICS 345
             AD+I+RL+N     D   T     ++ S     L ++    P    +  E  +F  V  S
Sbjct:   156 ADLIRRLSNE----DKKRTAG---DNGSGGGGGLEIIRTPRPYCTSSSSEKSNFPVVSFS 208

Query:   346 PKIRGRQAFADLLMQLERDRHRELDALAERQAVSRFTHRGRIQAMLRLRFLHRGMATQDQ 405
             PKIRGRQAF D LMQ+ERDRHRELD+L ER AVSRFT RGR+Q+MLRLR L+R +  QD+
Sbjct:   209 PKIRGRQAFTDFLMQMERDRHRELDSLFERNAVSRFTQRGRLQSMLRLRNLNRCLVIQDR 268

Query:   406 QLSLASGSRSFNRLSQRSAIRHLRDKFSPAANHGVTAQNEATTSRNPH---VEMENNTVH 462
               S A  +   NR+   SA+ HLR+KF   AN  V     AT  R  H    EM N +V 
Sbjct:   269 NRSNAK-TTGLNRIESGSAVLHLREKFH--AN--VVNSAAATDKRKNHQRSTEMNNKSVE 323

Query:   463 LKDSSNASG--LREVGQLQEATTAERMSAASEDNSVSQKSEEHQKEAKSKTDATQKGTKM 520
               + +  +   L++ G   EA  AER+     +  + + +   ++E+ S T  +QK    
Sbjct:   324 ETEGTTTTSTRLKDGGVTLEAFFAERLRP--RNRKIEEATLCKEEESVSGTVDSQKNCLQ 381

Query:   521 HTTSDHLKEATPETDVTQKGLNMDTTSDH-QKEASVKADAPQKGLNMVTTSDHHKEANL- 578
                +  ++E   +    +K     + S++  +E+ ++ +  +  +          E  + 
Sbjct:   382 LQETREVEETCNDGKSEKKEEENTSPSEYLSRESRLRQNQDENNVGKYMQETRETEGLVH 441

Query:   579 KTDVKEKGLNKETTS 593
             +++  ++ L+++ TS
Sbjct:   442 ESNEMDQCLDQQETS 456
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2120377 AT4G20160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044752 EDA18 "embryo sac development arrest 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184407 AT5G04460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156339 AT5G44690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00017342 F10D7.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q24746 neur "Protein neuralized" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
FB|FBgn0002932 neur "neuralized" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MSJ5 NEURL "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010613
hypothetical protein (924 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1039
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 4e-19
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 7e-11
cd0016245 cd00162, RING, RING-finger (Really Interesting New 8e-09
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 3e-08
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 9e-06
pfam04712481 pfam04712, Radial_spoke, Radial spokehead-like pro 0.002
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information 
 Score = 81.3 bits (201), Expect = 4e-19
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 983  KKRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDV 1032
            +   C IC E   + +   CGH+C C +CA  L  S  KCPICR PI+ V
Sbjct: 1    EDDLCVICLERPRNVVFLPCGHLCLCEECAKRL-RSKKKCPICRQPIESV 49

Length = 49
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1039
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 99.35
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 99.17
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 99.15
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 99.14
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 98.79
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 98.46
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.41
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 98.4
KOG0823 230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.39
PHA02929238 N1R/p28-like protein; Provisional 98.38
PLN03208 193 E3 ubiquitin-protein ligase RMA2; Provisional 98.32
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 98.32
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.3
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 98.25
KOG1785 563 consensus Tyrosine kinase negative regulator CBL [ 98.14
cd0016245 RING RING-finger (Really Interesting New Gene) dom 98.05
PHA02926242 zinc finger-like protein; Provisional 98.01
smart0050463 Ubox Modified RING finger domain. Modified RING fi 98.0
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.95
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.94
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.93
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 97.91
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 97.9
PF1463444 zf-RING_5: zinc-RING finger domain 97.85
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.81
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.76
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.48
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.4
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 97.39
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.37
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.32
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 97.31
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 97.31
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 97.27
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 97.22
COG5236 493 Uncharacterized conserved protein, contains RING Z 97.07
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 97.02
KOG1039 344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.92
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 96.57
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 96.55
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 96.26
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 96.22
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 96.19
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 95.89
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 95.59
COG5152259 Uncharacterized conserved protein, contains RING a 95.38
KOG2113394 consensus Predicted RNA binding protein, contains 95.16
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 95.16
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.11
KOG3002 299 consensus Zn finger protein [General function pred 95.07
KOG3039303 consensus Uncharacterized conserved protein [Funct 95.03
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 94.91
KOG1001 674 consensus Helicase-like transcription factor HLTF/ 94.18
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 93.94
PF04641260 Rtf2: Rtf2 RING-finger 93.78
KOG0297 391 consensus TNF receptor-associated factor [Signal t 93.56
KOG2932 389 consensus E3 ubiquitin ligase involved in ubiquiti 93.28
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 93.0
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 92.73
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 92.53
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 92.37
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 92.28
KOG2660 331 consensus Locus-specific chromosome binding protei 92.05
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 89.97
KOG1002 791 consensus Nucleotide excision repair protein RAD16 88.39
KOG3799169 consensus Rab3 effector RIM1 and related proteins, 87.49
COG5220 314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 86.41
COG52191525 Uncharacterized conserved protein, contains RING Z 86.13
PF04710416 Pellino: Pellino; InterPro: IPR006800 Pellino is i 84.5
COG5175 480 MOT2 Transcriptional repressor [Transcription] 84.49
COG5222427 Uncharacterized conserved protein, contains RING Z 84.14
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 83.5
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 83.25
KOG2113 394 consensus Predicted RNA binding protein, contains 82.4
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 81.64
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 81.6
KOG3579352 consensus Predicted E3 ubiquitin ligase [Posttrans 80.62
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.35  E-value=5.9e-14  Score=119.58  Aligned_cols=54  Identities=54%  Similarity=1.209  Sum_probs=50.6

Q ss_pred             cccccccccccccEEEecCCCcccCHHhHHHhhc-cCCCcccccccccceeeccc
Q 001640          984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW-SSGKCPICRAPIDDVVRAFM 1037 (1039)
Q Consensus       984 k~eC~ICLEnprDvVLLPCGHmcfC~sCA~kLsk-sskkCPICRApI~~VIRIYl 1037 (1039)
                      ...|.||++.+++.||+-|||||+|+.|...+.+ ..+.|||||+||.++|+.|.
T Consensus         7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~   61 (62)
T KOG4172|consen    7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR   61 (62)
T ss_pred             ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence            3789999999999999999999999999999887 57799999999999999986

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ] Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1039
3t6p_A345 Iap Antagonist-Induced Conformational Change In Cia 7e-06
3eb5_A74 Structure Of The Ciap2 Ring Domain Length = 74 8e-06
4auq_B62 Structure Of Birc7-Ubch5b-Ub Complex. Length = 62 3e-05
2vje_B63 Crystal Structure Of The Mdm2-Mdmx Ring Domain Hete 4e-04
2yhn_A79 The Idol-Ube2d Complex Mediates Sterol-Dependent De 9e-04
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345 Back     alignment and structure 
Iteration: 1

 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 985  RSCCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
            R+C +C + +V  +   CGH+  C +CA  L+    KCPICR  I   VR F+
Sbjct: 296  RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL 344
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74 Back     alignment and structure
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62 Back     alignment and structure
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer Length = 63 Back     alignment and structure
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1039
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 3e-23
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 3e-22
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 2e-20
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 2e-19
2ea5_A68 Cell growth regulator with ring finger domain prot 4e-18
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 5e-08
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 8e-07
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 1e-06
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 2e-06
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 2e-06
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 3e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 5e-06
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 1e-05
2ecm_A55 Ring finger and CHY zinc finger domain- containing 2e-05
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 2e-05
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 3e-05
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 3e-05
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 4e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 6e-05
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 7e-05
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 8e-05
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 2e-04
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 2e-04
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 2e-04
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 3e-04
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 4e-04
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
 Score = 92.6 bits (230), Expect = 3e-23
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 984  KRSCCICYEMQVDS--LLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFM 1037
             + C +C +   D   +  R GH+ TC  CA  L+ +   CPIC+  I  V++ F+
Sbjct: 7    LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1039
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 4e-09
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 1e-08
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 3e-08
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 3e-07
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 4e-06
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 4e-06
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 6e-05
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 2e-04
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 2e-04
d1vyxa_60 g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do 0.002
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 14/52 (26%), Positives = 18/52 (34%)

Query: 987  CCICYEMQVDSLLYRCGHMCTCLKCAHELQWSSGKCPICRAPIDDVVRAFMD 1038
            C IC E   D  +  CGH+          +     CP CR  I       +D
Sbjct: 26   CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 77
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1039
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.83
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.61
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.53
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.41
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.34
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.34
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.22
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 98.18
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.15
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 98.12
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.11
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.1
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.08
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.08
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.05
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.33
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.59
d2cs3a180 Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [ 83.73
d2fiya1290 FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId 80.69
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.1e-09  Score=77.36  Aligned_cols=54  Identities=31%  Similarity=0.656  Sum_probs=46.6

Q ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCCEEECCCC
Q ss_conf             3212122234422799168985247874999521-698764454332352551225
Q 001640          984 KRSCCICYEMQVDSLLYRCGHMCTCLKCAHELQW-SSGKCPICRAPIDDVVRAFMD 1038 (1039)
Q Consensus       984 k~eCvIClE~piDaVLLPCGHlClCssCA~kLsk-ssksCPICRApItsVIRVYlA 1038 (1039)
                      ...|+||++...+.+++||||. ||..|+..|.. ...+||+||..|.....+..+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i~   77 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD   77 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSCC
T ss_pred             CCCCCCCCCCCCCEEEECCCCE-EEHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC
T ss_conf             8999358976899699589993-529999999997858189979586477666407
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure