Citrus Sinensis ID: 001649

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------104
MTLEDFFSLTKMKDGLTVPSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSWNQGRVSEALDHDVKCVGFSQDDNTAVSSIQANESRTESSAIDVPLPQGSVNEENNGAEPSGPEKLPVNSECLQPEKEEDVKTKTDNNELCSHGKLDDIDMEGKPPDHVATSKLSNSVLENSAMEDKFPEGTVKTISSVEACRSPAPKQCCKEEQSDTLKTNEFSKDEKHVPKVSSFPENICEKAFASSSTVESRNVSSAVEVASAHDIMAGSAVGKHFDTDEGDLDPKDPALGDLRKLASEPKNRMDDVQVINNCSTPMFKPTGEDDDYQSDAMQDSSGNECTYGKHKDLETSFSRIKDIGAADKDKDHVSDGDSDSRNDFHFSKATMATRNPDATNRRESDIELEYGIVDALEVARKVALEYREPSCSSSDKILGGGIRPPESPDSVNEKLDLADEVPVKELPTERNYSAEAYPEGEGQLINSDNRVAEPENGIADMDSSQVTEAAREPEVNRDKGLCDFDLNQEVCSDDMDNPVNPVNHVSTPVSVVSTSRPAVAPGLPVAPLQFEGTLGWKGTAATSAFRPASPRRISDSDKTTLIVGGANNSSKQRQDCLDIDLNVAESEDEKLADLIPEKQIPVSSGLQSAESSVEVSPRRSERLNLDLNRISDDSDAPPSDLRMERRLLYNRNGHRSPSPASSSSSMQPLLRNFDLNDRPFLQNDTPDPGPYHGKSSQSVNPFGLPKPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDGNLARGGGVLGLGPPAAYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSAAAVPPSYSQPPPFIVSVAGAPSAITGPLRPNFDLNSGFPTEGGNRDSLGLRQLFMPGQGRSMEEHLRTSSQPSSSSGAGGKRKEPDGGWETYSLNYRHQQPPWN
ccHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccEEccccccccEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccHHcccccccccccccccccccccccccccccccccccEccccccccHHccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccHHHcccHccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHccccHHccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEcccEccccccccccccccccccccccccccccccccccccEEEEcccEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEccccccccccccccccccccccc
MTLEDFFSltkmkdgltvpSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFgnntnegfVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFdswnqgrvsealdhdvkcvgfsqddntaVSSIQanesrtessaidvplpqgsvneenngaepsgpeklpvnseclqpekeedvktktdnnelcshgklddidmegkppdhvatsklSNSVlensamedkfpegtvktissveacrspapkqcckeeqsdtlktnefskdekhvpkvssfpeniceKAFASSSTVESRNVSSAVEVASAhdimagsavgkhfdtdegdldpkdpalgdlrklasepknrmddvqvinncstpmfkptgedddyqsdamqdssgnectygkhkdleTSFSRikdigaadkdkdhvsdgdsdsrndfhfskatmatrnpdatnrresdiELEYGIVDALEVARKVALeyrepscsssdkilgggirppespdsvnekldladevpvkelpternysaeaypegegqlinsdnrvaepengiadmdssqvteaarepevnrdkglcdfdlnqevcsddmdnpvnpvnhvstpvsvvstsrpavapglpvaplqfegtlgwkgtaatsafrpasprrisdsdkttlivggannsskqrqdCLDIDlnvaesedekladlipekqipvssglqsaessvevsprrserlnldlnrisddsdappsdlrMERRLLYnrnghrspspasssssmqpllrnfdlndrpflqndtpdpgpyhgkssqsvnpfglpkpddpvisimgarvevnrkefipqisclpngksletamdgnlargggvlglgppaaysnsplfgyngfaaastlsysspmygpgstipymvdsrgapvvpqivgsaaavppsysqpppfivsvagapsaitgplrpnfdlnsgfpteggnrdslglrqlfmpgqgrsmeehlrtssqpssssgaggkrkepdggwetyslnyrhqqppwn
mtledffsltkmkdgltvpSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASAlsatenrdCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSWNQGRVSEALDHDVKCVGFSQDDNTAVSSIQanesrtessaidvplpqGSVNEENNgaepsgpeklpvnsECLQPEkeedvktktdnnelCSHGKLDDIDMEGKPPDHVATSKLSNSVLENSAMEDKFPEGTVKTISSveacrspapkqcckeeqsdtlktnefskdekhvpkvssfpenICEKAFASSSTVESRNVSSAVEVASAHDIMAGSAVGKHFDTDEGDLDPKDPALGDLRKLasepknrmddvqvinNCSTPMFKPTGEDDDYQSDAMQDSSGNECTYGKHKDLETSFSRIKDigaadkdkdhvsdgdsdsrndfhfskatmatrnpdatnrresdieLEYGIVDALEVARKVALEyrepscsssdkilgggirPPESPDSVNEKLDLadevpvkelpternysaeaypegegqlINSDNRVAEPENGIADMDSSQVTEAarepevnrdkglCDFDLNQEVCSDDMDNPVNPVNHVSTPVSVVSTSRPAVAPGLPVAPLQFEGTLGWKGTaatsafrpasprrisdsdkttlivggannsskqrqdCLDIDLNVAESEDEKLadlipekqipvssglqsaessvevsprrserlnldlnrisddsdappsdlRMERRLLYnrnghrspspasssssmqPLLRNFDLNDRPFLQNDTPDPGPYHGKSSQSVNPFGLPKPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDGNLARGGGVLGLGPPAAYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSAAAVPPSYSQPPPFIVSVAGAPSAITGPLRPNFDLNSGFPTEGGNRDSLGLRQLFMPGQGRSMEEHLrtssqpssssgaggkrkepdggWETYslnyrhqqppwn
MTLEDFFSLTKMKDGLTVPSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSWNQGRVSEALDHDVKCVGFSQDDNTAVSSIQANESRTESSAIDVPLPQGSVNEENNGAEPSGPEKLPVNSECLQPEKEEDVKTKTDNNELCSHGKLDDIDMEGKPPDHVATSKLSNSVLENSAMEDKFPEGTVKTISSVEACRSPAPKQCCKEEQSDTLKTNEFSKDEKHVPKVSSFPENICEKAFAssstvesrnvssAVEVASAHDIMAGSAVGKHFDTDEGDLDPKDPALGDLRKLASEPKNRMDDVQVINNCSTPMFKPTGEDDDYQSDAMQDSSGNECTYGKHKDLETSFSRikdigaadkdkdHVSDGDSDSRNDFHFSKATMATRNPDATNRRESDIELEYGIVDALEVARKVALEYREPSCSSSDKILGGGIRPPESPDSVNEKLDLADEVPVKELPTERNYSAEAYPEGEGQLINSDNRVAEPENGIADMDSSQVTEAAREPEVNRDKGLCDFDLNQEVCSDDMDNpvnpvnhvstpvsvvstsrpavapglpvaplQFEGTLGWKGTAATSAFRPASPRRISDSDKTTLIVGGANNSSKQRQDCLDIDLNVAESEDEKLADLIPEKQIPVSSGLQsaessvevsprrserLNLDLNRISDDSDAPPSDLRMERRLLYNRNGHRspspasssssMQPLLRNFDLNDRPFLQNDTPDPGPYHGKSSQSVNPFGLPKPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDgnlargggvlglgppaaYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSAAAVPPSYSQPPPFIVSVAGAPSAITGPLRPNFDLNSGFPTEGGNRDSLGLRQLFMPGQGRSMEEHLRTssqpssssGAGGKRKEPDGGWETYSLNYRHQQPPWN
********L***KDGLTVPSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHS***V*DRARALFDSWNQGRVSEALDHDVKCVGF************************************************************************************************************************************************************************************************************************************************************************************************************************************IELEYGIVDALEVARKVALEY**********************************************************************************************LCDFDLN*******************************VAPGLPVAPLQFEGTLGWKGTA**************************************************************************************************************************************************************************VISIMGARVEVNRKEFIPQISCLPNGKSLETAMDGNLARGGGVLGLGPPAAYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSA************FIVSVA**************************************************************************************
***EDFFSLTKMKDGLTVPSRVEELVGIMQK*****VKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLK***************ESITAMMGALEKLHIDY***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LNVAES*****************************************************************************************************************************************************************************************GFAAA*T*************************************************************************************************************************WETYSLNY********
MTLEDFFSLTKMKDGLTVPSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLL*********RARALFDSWNQGRVSEALDHDVKCVGFSQDDNTAVS************AIDVPLPQGSVN**************PVNSECLQPEKEEDVKTKTDNNELCSHGKLDDIDMEGKPPDHVATSKLSNSVLENSAMEDKFPEGTVKTISSVEA*******************TNEFSKDEKHVPKVSSFPENICEKA****************EVASAHDIMAGSAVGKHFDTDEGDLDPKDPALGDLRKLASEPKNRMDDVQVINNCSTPMFKPTGEDDDYQSDAMQDSSGNECTYGKHKDLETSFSRIKDIGAA*************SRNDFHFSKATMATRNPDATNRRESDIELEYGIVDALEVARKVALEYREPSCSSSDKILGGGIRPPESPDSVNEKLDLADEVPVKELPTERNYSAEAYPEGEGQLINSDNRVAEPENGIAD***************NRDKGLCDFDLNQEVCSDDMDNPVNPVNHVSTPVSVVSTSRPAVAPGLPVAPLQFEGTLGWKGTAATSAFRPASPRRISDSDKTTLIVGGANNSSKQRQDCLDIDLNVAESEDEKLADLIPEKQIPV******************ERLNLDLNRISDDSDAPPSDLRMERRLLYNRN**************QPLLRNFDLNDRPFLQNDTPDPGPYHGKSSQSVNPFGLPKPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDGNLARGGGVLGLGPPAAYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSAAAVPPSYSQPPPFIVSVAGAPSAITGPLRPNFDLNSGFPTEGGNRDSLGLRQLFMPGQG**************************DGGWETYSLNYRHQQPPWN
*TLEDFFSLTKMKDGLTVPSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSWNQGRVSEALDHDVKCVGFSQDDNTAVSSIQ******ESSA**************************************************************************************************************************************************************************************************************************************************************************************************************IELEYGIVDALEVARKVALEYREP*******************************************************************************************LCDFDLNQEVCSDDMDNPVNPVNHVSTPVSVVSTSRPAVAPGLPVAPLQFEGTLGWK**************************************CLDI***VAESED*K**DL******************************L***RISDDSDAPPSDLRMERRLLYNRNGHR************PLLRNFDLNDRPFLQNDTP*******************KPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDGNLARGGGVLGLGPPAAYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSAAAVPPSYSQPPPFIVSVAG******************FPTEGGNRDSLGLRQLFMPGQGRSMEEHLRTSSQPSSSSGAGGKRKEPDGGWETYSLNYRHQQP***
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTLEDFFSLTKMKDGLTVPSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSWNQGRVSEALDHDVKCVGFSQDDNTAVSSIQANESRTESSAIDVPLPQGSVNEENNGAEPSGPEKLPVNSECLQPEKEEDVKTKTDNNELCSHGKLDDIDMEGKPPDHVATSKLSNSVLENSAMEDKFPEGTVKTISSVEACRSPAPKQCCKEEQSDTLKTNEFSKDEKHVPKVSSFPENICEKAFASSSTVESRNVSSAVEVASAHDIMAGSAVGKHFDTDEGDLDPKDPALGDLRKLASEPKNRMDDVQVINNCSTPMFKPTGEDDDYQSDAMQDSSGNECTYGKHKDLETSFSRIKDIGAADKDKDHVSDGDSDSRNDFHFSKATMATRNPDATNRRESDIELEYGIVDALEVARKVALEYREPSCSSSDKILGGGIRPPESPDSVNEKLDLADEVPVKELPTERNYSAEAYPEGEGQLINSDNRVAEPENGIADMDSSQVTEAAREPEVNRDKGLCDFDLNQEVCSDDMDNPVNPVNHVSTPVSVVSTSRPAVAPGLPVAPLQFEGTLGWKGTAATSAFRPASPRRISDSDKTTLIVGGANNSSKQRQDCLDIDLNVAESEDEKLADLIPEKQIPVSSGLQSAESSVEVSPRRSERLNLDLNRISDDSDAPPSDLRMERRLLYNRNGHRSPSPASSSSSMQPLLRNFDLNDRPFLQNDTPDPGPYHGKSSQSVNPFGLPKPDDPVISIMGARVEVNRKEFIPQISCLPNGKSLETAMDGNLARGGGVLGLGPPAAYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSAAAVPPSYSQPPPFIVSVAGAPSAITGPLRPNFDLNSGFPTEGGNRDSLGLRQLFMPGQGRSMEEHLRTSSQPSSSSGAGGKRKEPDGGWETYSLNYRHQQPPWN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1038
2555389801005 conserved hypothetical protein [Ricinus 0.951 0.983 0.561 0.0
2254579291020 PREDICTED: uncharacterized protein LOC10 0.962 0.979 0.523 0.0
2240859061008 predicted protein [Populus trichocarpa] 0.935 0.963 0.527 0.0
2240619871011 predicted protein [Populus trichocarpa] 0.940 0.965 0.522 0.0
3574384711020 hypothetical protein MTR_1g025500 [Medic 0.949 0.966 0.459 0.0
4494374181030 PREDICTED: uncharacterized protein LOC10 0.956 0.964 0.446 0.0
4495112401030 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.956 0.964 0.446 0.0
302142687738 unnamed protein product [Vitis vinifera] 0.631 0.887 0.473 1e-162
2977995841002 hypothetical protein ARALYDRAFT_492440 [ 0.939 0.973 0.365 1e-131
223288981000 Transcription elongation factor (TFIIS) 0.922 0.958 0.364 1e-129
>gi|255538980|ref|XP_002510555.1| conserved hypothetical protein [Ricinus communis] gi|223551256|gb|EEF52742.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1053 (56%), Positives = 722/1053 (68%), Gaps = 65/1053 (6%)

Query: 1    MTLEDFFSLTKMKDGLTVPSRVEELVGIMQKEKDFVVKNIGDATRQWAVVASALSATENR 60
            MTLEDFF+LT+MKDGLT PSRV ELV +MQKEKD VV N+GDATRQWA VAS +SATEN+
Sbjct: 1    MTLEDFFTLTEMKDGLTAPSRVHELVAVMQKEKDCVV-NVGDATRQWAAVASTISATENK 59

Query: 61   DCLDRFIQLDGLGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGI 120
            DCLD FI+LDGLG IDRWLK  QKFGN+T + FVEES+ A++        D E SVSSGI
Sbjct: 60   DCLDLFIKLDGLGFIDRWLKDAQKFGNDTTDRFVEESLIALL-------XDKERSVSSGI 112

Query: 121  WITVKSLLGHSSSQVQDRARALFDSWNQGRVSEALDHDVKCVGFSQDDNTAVSSIQANES 180
            WIT+ +LL HSSS+VQDRARAL+DSW Q RV +A  HDV+ +G S+D     S + +  S
Sbjct: 113  WITINNLLHHSSSRVQDRARALYDSWKQDRVDDAYHHDVQTLGASRD----ASVLSSENS 168

Query: 181  RTESSAIDVPLPQGSVNEENNGAEPSGPEKLPVNSECLQPEKEEDVKTKTDNNELCSHGK 240
              E +A+DVPLP+GS + ENN A+ S    L  NS  L  E+ EDV+ +   N       
Sbjct: 169  GAECAAMDVPLPRGSADVENNVADSSTDVNLQSNSNSLHLERVEDVQIQMQGN------- 221

Query: 241  LDDIDMEGKPPDHVATSKLSNSVLENSAMEDKFPEGTVKTISSVEACRSPAPKQCCKEEQ 300
                 ME K  + +  S +SNSV E+ +M++K    TV+  +  E  R+  P +   E  
Sbjct: 222  -----MEDKALNPLTMSVMSNSVQESPSMKEKSSIITVEGTALTE-IRNILPTK--GENI 273

Query: 301  SDTLKTNEFSKDEKHVPKVSSFPENICEKAFASSSTVESRNVSSAVEVASAHDIMAGSAV 360
               L +++          +SSF +N    A + SS VE    SS  + ASA +  A + V
Sbjct: 274  EPELNSSKM---------LSSFSDNSSMIA-SPSSKVEPGVSSSNADCASAKEDPAKT-V 322

Query: 361  GKHFDTDEGDLDPKDPALGDLRKLASEPKNRMDDVQVINNCSTPMFKPTGEDDDYQSDAM 420
              + +  +GD      A GD     S  K+  DD  V+N+ STP+FK      D   D M
Sbjct: 323  QTNVNAKDGDFGSSTAASGDAGMSISPRKSTPDDAGVMNHGSTPVFKSAESRGDCPPDTM 382

Query: 421  QDSSGNECTYGKHKDLETSFSRIKDIGAADKDKDHVSDGDSDSRNDFHFSKATMATRNPD 480
            QDSS ++      +D+ T FSRI D+G AD D++H SDG  D R+D  FS+  + TR+ D
Sbjct: 383  QDSSDSDRKLENPEDVGTPFSRIHDVGVADDDREHGSDGAEDLRDDSDFSRPDIHTRSID 442

Query: 481  ATNRRESDIELEYGIVDALEVARKVALE-------YREPSCSSS-DKILGGGIRPPESPD 532
              NRR SDIELEY IVDALEVAR+VA E       YREPSCSSS +K++   IR P+SPD
Sbjct: 443  PINRRRSDIELEYDIVDALEVARQVAQEVEREVVDYREPSCSSSSEKVMETDIRQPDSPD 502

Query: 533  SVNEKLDLADEVPVKELPTERNYSAEAYPEGEGQLINSDNRVAEPENGIADMDSSQVTEA 592
            S N K     EV   ++P  +N SAEAYP  +G+L++S+N   E EN   +++SSQVTE 
Sbjct: 503  SSNAKECPYTEVSRDDMPIGQNQSAEAYPGEDGRLVSSNNVETEAENVTQELESSQVTEV 562

Query: 593  AREPEVNRDKGLCDFDLNQEVCSDDMDNPVNPVNHVSTPVSVVSTSRPAVAPGLPVAPLQ 652
            A EPE   +KG CDFDLNQEVCSDDMD PVNP+   STP+SVVS SRPAVA G P APLQ
Sbjct: 563  APEPEAFTEKGFCDFDLNQEVCSDDMDRPVNPI---STPISVVSASRPAVASGSPSAPLQ 619

Query: 653  FEGTLGWKGTAATSAFRPASPRRISDSDKTTLIVGGANNSSKQRQDCLDIDLNVAESEDE 712
            FEG LGWKG+AATSAFRPASPR+ISD DKT L  GG ++SSKQRQD L IDLNVAE  DE
Sbjct: 620  FEGILGWKGSAATSAFRPASPRKISDGDKT-LDTGGTSSSSKQRQDSLVIDLNVAEDGDE 678

Query: 713  KLADLIPEKQIPVSSGLQSAESSVEVSPRRSERLNLDLNRISDDSDAPPSDLRMERRLLY 772
            K+ DLI  +  PVSSGL S ESS+E+ PRRSER NLDLNRI DD DA  S LRME RL Y
Sbjct: 679  KV-DLISGRPFPVSSGLHSGESSLEIGPRRSERPNLDLNRIIDDGDALASGLRMEGRLFY 737

Query: 773  NRNGHRSPSPASSSSSMQPLLRNFDLNDRPFLQNDTPDPGPYHGKSSQSVNPFGLPKPDD 832
             RNGHRSPSPASSSSSMQPL+RNFDLNDRP   ND+ D G +H  S+Q+V+ FG  KP D
Sbjct: 738  PRNGHRSPSPASSSSSMQPLVRNFDLNDRPLFHNDSLDQGLHH--SNQTVSAFGGSKPRD 795

Query: 833  PVISIM------GARVEVNRKEFIPQISCLPNGKSLETAMDGNLARGGGVLGLGPPAAYS 886
            PVISIM      G RVEV RK+F  QI  LPNGK ++ AMDGN+AR GGVLG+ P  +Y+
Sbjct: 796  PVISIMGTRVEVGGRVEVGRKDFPHQIPSLPNGKPMDPAMDGNIARMGGVLGI-PTVSYT 854

Query: 887  NSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVVPQIVGSAAAVPPSYSQPPP 946
            +SP+FGYNG   A T+S SS +YGPG+++PY+VD+RGAPVV  I+GSA+AVPP++SQ PP
Sbjct: 855  HSPVFGYNGLTTAPTMSISSAVYGPGASLPYVVDTRGAPVVSPILGSASAVPPAFSQ-PP 913

Query: 947  FIVSVAGAPSAI--TGPLRPNFDLNSGFPTEGGNRDSLGLRQLFMPGQGRSMEEHLRTSS 1004
            FI+S++GAP ++   GP R NFDLNSGF  EGGN    GLRQLF+PGQ RSMEEHLR ++
Sbjct: 914  FIMSMSGAPVSLNGAGPSRHNFDLNSGFAIEGGNPG--GLRQLFLPGQSRSMEEHLRANA 971

Query: 1005 QPSSSSGAGGKRKEPDGGWETYSLNYRHQQPPW 1037
            QPSSSSG GGKR+EPD GWE YSL Y+H QPPW
Sbjct: 972  QPSSSSGVGGKRREPDSGWEPYSLPYKHPQPPW 1004

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225457929|ref|XP_002279699.1| PREDICTED: uncharacterized protein LOC100247144 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224085906|ref|XP_002307733.1| predicted protein [Populus trichocarpa] gi|222857182|gb|EEE94729.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061987|ref|XP_002300698.1| predicted protein [Populus trichocarpa] gi|222842424|gb|EEE79971.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357438471|ref|XP_003589511.1| hypothetical protein MTR_1g025500 [Medicago truncatula] gi|355478559|gb|AES59762.1| hypothetical protein MTR_1g025500 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449437418|ref|XP_004136489.1| PREDICTED: uncharacterized protein LOC101221601 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449511240|ref|XP_004163902.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229615 [Cucumis sativus] Back     alignment and taxonomy information
>gi|302142687|emb|CBI19890.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297799584|ref|XP_002867676.1| hypothetical protein ARALYDRAFT_492440 [Arabidopsis lyrata subsp. lyrata] gi|297313512|gb|EFH43935.1| hypothetical protein ARALYDRAFT_492440 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22328898|ref|NP_194151.2| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gi|17381116|gb|AAL36370.1| unknown protein [Arabidopsis thaliana] gi|20465607|gb|AAM20286.1| unknown protein [Arabidopsis thaliana] gi|332659463|gb|AEE84863.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1038
TAIR|locus:21359071000 AT4G24200 [Arabidopsis thalian 0.624 0.648 0.331 7.1e-126
TAIR|locus:2097915 1613 SUO "'shuttle' in chinese" [Ar 0.133 0.086 0.326 1.9e-27
TAIR|locus:2097925 1611 AT3G48060 [Arabidopsis thalian 0.133 0.086 0.326 1.1e-26
TAIR|locus:2135907 AT4G24200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 790 (283.2 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
 Identities = 229/691 (33%), Positives = 317/691 (45%)

Query:   349 ASAHDIMAGSAVGKHFDTDEGDLDPKDPALGDLRKLASEPKNRMDDVQVINNCSTPMFKP 408
             A+ H  ++  ++    + ++  L        ++ K  S       DV V +N S  +   
Sbjct:   333 AAGHVAVSSDSIVASMELEKNSLLQSSLDSNEVSKNVSGTICGSHDVSVAHN-SKQVSSL 391

Query:   409 TGEDDDYQSDAMQDSSGNECTYGKHKDLETSFSRXXXXXXXXXXXXHVSDGDSDSRNDFH 468
             T   D+  SD     SG     G+ +  E+                H        R    
Sbjct:   392 THMTDNQDSDNSSRLSGG---LGRSRKFESDNLTGLADNEGKDDMGHSDKKRRVKRRKKR 448

Query:   469 FSKATMA-TRNPDATNRRESDIELEYGIVDALEVARKVALEYR------EPSCSSSDKIL 521
              S  +M  ++   A ++  +DI+L  GI+DALEVA KVA E        EPS SSS+++ 
Sbjct:   449 ISSRSMTISQRLGAIDKTTTDIDL--GILDALEVATKVAQEVAREVDSGEPSHSSSEELS 506

Query:   522 GGGIRPPESPDSVNEKLDLADEVPVKELPTERNYSAEAYPEGEGQLINSDNRVAEPENGI 581
                    +S    +   D+    P K L    N+S E    G+  L+  D +  +PE+G 
Sbjct:   507 D---ESGQSGSQYSRDDDVHTGSPSKGLSVTENHSFEEPHVGDDDLM--DEKDDKPESG- 560

Query:   582 ADMDSSQVTEAAREPEVNRDKGLCDFDLNQEVCSDDMDNXXXXXXXXXXXXXXXXXXXXX 641
              D++   +  AA+  EV R+K  C FDLNQ++C D+ D                      
Sbjct:   561 -DVEERHLATAAKS-EVGREKSPCGFDLNQDICPDETD--VIMSSTSTTPAPMSVSFSVS 616

Query:   642 XXXXXXXXXXQFEGTLGWKGTAATSAFRPASPRRISDSDKTTLIVGGANNSSKQRQDCLD 701
                         E +L  KG+AATS F  A P ++   D     V      S+       
Sbjct:   617 SSAMPAAAPWHLERSLSGKGSAATSVFHSALPHKVPSGDLREKQV-----ISR------G 665

Query:   702 IDLNVAESEDEKLADLIPEKQIPVSSG-LQXXXXXXXXXXXXXXXLNLDLNRISDDSDAP 760
             IDLNVAE  D+++ DL P KQ P SS   +                NLDLN +++D + P
Sbjct:   666 IDLNVAEVGDDQVEDLTPWKQFPFSSSNSRGGESSHEASLRGSSKFNLDLNCMNEDDEMP 725

Query:   761 P-SDLRMERRLLYNRNGHRXXXXXXXXXXMQPLLR--NFDLNDRPFLQNDTPDPGPYHGK 817
             P S+ +ME RL  + NG +           Q   +  NFDLNDRP    D+ D GPY+G+
Sbjct:   726 PPSESKMETRLFLSHNGQQSASPVSSSSVAQQSGKEVNFDLNDRPQFFIDSRDQGPYYGR 785

Query:   818 SSQSVNPFGLPKPDDPVISIMGARVEVNRKEFIPQI-SCLPNGKSLETAMDXXXXXXXXX 876
                S   +G  K ++P ISI+G +VE +RK+ +PQ+ S L NGKSLE A           
Sbjct:   786 HPWSTASYGGHKLEEPGISILGTKVEADRKDSVPQMASFLSNGKSLEPATGLHMGRTGNS 845

Query:   877 XXXXXXXXYSNSPLFGYNGFAAASTLSYSSPMYGPGSTIPYMVDSRGAPVV-PQIVGSAA 935
                     +S +P++GYNG      LS SSPMY PG+ IPYMVDSRG PV+ PQI+GSA 
Sbjct:   846 LGLAPGVSFSPAPMYGYNGLTGPPGLSMSSPMYVPGTAIPYMVDSRGTPVMMPQIIGSAP 905

Query:   936 AVPPSYSQPPPFIVSVAGAPSAITGPLRPNFDLNSGFPTEGGNRDSLGLRQLFMPGQGRS 995
              V P + Q   F+    G+PS   G +RPNFD NSGF  E GNR+SL LRQ   P Q  +
Sbjct:   906 YVQPPFPQQHMFMSLAGGSPST-NGSMRPNFDQNSGFGLEIGNRESLNLRQFLSPSQSGA 964

Query:   996 MEEH--LRTXXXXXXXXGAGGKRKEPDGGWE 1024
             M EH               GGKRKEP+  WE
Sbjct:   965 MGEHSGANVEPSSSSSISIGGKRKEPEPRWE 995
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2097915 SUO "'shuttle' in chinese" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097925 AT3G48060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00051465
hypothetical protein (1008 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1038
pfam0871151 pfam08711, Med26, TFIIS helical bundle-like domain 9e-05
cd0018376 cd00183, TFIIS_I, N-terminal domain (domain I) of 2e-04
smart0050975 smart00509, TFS2N, Domain in the N-terminus of tra 0.002
>gnl|CDD|204037 pfam08711, Med26, TFIIS helical bundle-like domain Back     alignment and domain information 
 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 102 MGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSW 146
           +  L+KL I  EL   +GI   V  L  H + +V+  A+ L   W
Sbjct: 3   LKELKKLPITEELLRETGIGKAVNKLRKHENEEVKKLAKKLIKKW 47

Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5. Length = 51
>gnl|CDD|238107 cd00183, TFIIS_I, N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme Back     alignment and domain information
>gnl|CDD|197766 smart00509, TFS2N, Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1038
cd0018376 TFIIS_I N-terminal domain (domain I) of transcript 99.16
smart0050975 TFS2N Domain in the N-terminus of transcription el 99.11
PF0871153 Med26: TFIIS helical bundle-like domain; InterPro: 99.03
TIGR01385299 TFSII transcription elongation factor S-II. This m 98.55
KOG1105296 consensus Transcription elongation factor TFIIS/Co 98.06
PLN029761713 amine oxidase 97.85
KOG1886464 consensus BAH domain proteins [Transcription] 97.29
KOG1793417 consensus Uncharacterized conserved protein [Funct 96.89
COG5139397 Uncharacterized conserved protein [Function unknow 91.55
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 82.29
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme Back     alignment and domain information 
Probab=99.16  E-value=6.9e-11  Score=105.50  Aligned_cols=57  Identities=26%  Similarity=0.353  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhhhccchhhhhccChHHHHhhhcCCCCHHHHHHHHHHHHhhccCcc
Q 001649           95 EESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRARALFDSWNQGRV  151 (1038)
Q Consensus        95 ee~ilalL~ALekLPVd~e~Lks~~igktV~~L~~H~n~~Iq~kAr~Lvd~Wk~~v~  151 (1038)
                      ++.++.+|++|+++||+.+.|++++||++|+.|++|.+++|+++|+.|+++||+.+.
T Consensus        20 ~~~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk~~v~   76 (76)
T cd00183          20 VSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWKKLVD   76 (76)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence            678999999999999999999999999999999999999999999999999998763

>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere) Back     alignment and domain information
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription Back     alignment and domain information
>TIGR01385 TFSII transcription elongation factor S-II Back     alignment and domain information
>KOG1105 consensus Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1 [Transcription] Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>KOG1886 consensus BAH domain proteins [Transcription] Back     alignment and domain information
>KOG1793 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5139 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1038
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
2xpp_A145 IWS1, ECU08_0440; transcription, elongation, histo 1e-06
3nfq_A170 Transcription factor IWS1; SPN1, RNA polymerase II 3e-05
1wjt_A103 Transcription elongation factor S-II protein 3; fo 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 67.6 bits (164), Expect = 2e-11
 Identities = 91/683 (13%), Positives = 183/683 (26%), Gaps = 230/683 (33%)

Query: 23  EELVGIMQKE--KDFVVKNIGDATRQWAVVASALSATENRDCLDRFIQLDGLGLIDRWLK 80
           ++++ + +     +F  K++ D  +      S LS     +     +  D +    R   
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPK------SILS---KEEIDHIIMSKDAVSGTLRLFW 69

Query: 81  QVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGHSSSQVQDRAR 140
            +        + FVEE           L I+Y+       ++        S  + + R  
Sbjct: 70  TLLSKQEEMVQKFVEEV----------LRINYK-------FLM-------SPIKTEQRQP 105

Query: 141 AL-FDSWNQGRVSEALDHDVKCVGFSQDDNTAVSSIQANESRTESSAIDVPLPQGSVNEE 199
           ++    + + R  + L +D +                                + +V+  
Sbjct: 106 SMMTRMYIEQR--DRLYNDNQ-----------------------------VFAKYNVSR- 133

Query: 200 NNGAEPSGPEKLPVNSECLQPEKEEDVKTKTDNNELCSHGKLDDIDMEG--KPPDHVATS 257
                    +      + L   +            +   G      + G  K       +
Sbjct: 134 --------LQPYLKLRQALLELR--------PAKNVLIDG------VLGSGK-------T 164

Query: 258 KLSNSVLENSAMEDKFPEG----TVKTISSVEA--------CRSPAPKQCCKEEQSDTLK 305
            ++  V  +  ++ K         +K  +S E              P    + + S  +K
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 306 TN-EFSKDE-KHVPKVSSFPE------NICE----KAFASSST--VESRNVSSAVEVASA 351
                 + E + + K   +        N+       AF  S    + +R       +++A
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 352 H-------DIMAG-------SAVGKHFDTDEGDLDPKDPALGDLRKLASEPKNRMDDVQV 397
                               S + K+ D    DL P++    + R+L+   ++  D +  
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLAT 343

Query: 398 INNCSTPMFKPTGEDDDYQSDAMQ---DSSGNECTYGKHKDLETSFSRIKDIGAADKD-- 452
            +N     +K          D +    +SS N     +++ +   F     +        
Sbjct: 344 WDN-----WK------HVNCDKLTTIIESSLNVLEPAEYRKM---F---DRLSVFPPSAH 386

Query: 453 ----------KDHVSDGDSDSRNDFHFSKATMATRNPDATNRRESDIELEYG--IVDALE 500
                      D +        N  H  K ++  + P  +      I LE    + +   
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 501 VARKVALEYREPSCSSSDKI------------LG---GGIRPPESPDSVNEK-LDL---- 540
           + R +   Y  P    SD +            +G     I  PE         LD     
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 541 --------ADEVPVKELPT---ERNYSA---------EAY--------PEGEGQLINSDN 572
                   A       L T    + Y           E          P+ E  LI S  
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 573 ----RVA--EPENGIADMDSSQV 589
               R+A    +  I +    QV
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQV 587
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A Length = 145 Back     alignment and structure
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A Length = 170 Back     alignment and structure
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1 Length = 103 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1038
d1eo0a_77 a.48.3.1 (A:) Transcription elongation factor TFII 4e-05
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77 Back     information, alignment and structure

class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor TFIIS N-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 9/73 (12%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 75  IDRWLKQVQKFGNNTNEGFVEESITAMMGALEK-LHIDYELSVSSGIWITVKSLLGHSSS 133
           +   +K ++K  +N      + ++  ++  L+K      +L   + + + V      ++ 
Sbjct: 6   VLVHVKNLEKNKSN------DAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNV 59

Query: 134 QVQDRARALFDSW 146
           ++    + +  SW
Sbjct: 60  EISKLVKKMISSW 72

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1038
d1wjta_103 Transcription elongation factor S-II protein 3 {Mo 99.18
d1eo0a_77 Transcription elongation factor TFIIS N-domain {Ba 99.04
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.24
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.79
d2b4jc181 PC4 and SFRS1-interacting protein, PSIP1 {Human (H 92.71
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 81.17
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: N-cbl like
superfamily: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
family: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
domain: Transcription elongation factor S-II protein 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.6e-11  Score=89.93  Aligned_cols=78  Identities=21%  Similarity=0.271  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCC
Q ss_conf             37799999999870699997204999999999986203531335304847878433179-99889999999997312586
Q 001649           72 LGLIDRWLKQVQKFGNNTNEGFVEESITAMMGALEKLHIDYELSVSSGIWITVKSLLGH-SSSQVQDRARALFDSWNQGR  150 (1038)
Q Consensus        72 l~~L~~WL~~aqk~g~~~~d~~~ee~ilalL~ALekLPVd~e~Lks~~igktV~~L~~H-~n~~Iq~kAr~Lvd~Wk~~v  150 (1038)
                      +.-|-+||..+.. ..+.      +.|+.+|+.|+.+||++++|++++||++|++|++| .+.+|+++|+.||++||+.+
T Consensus        14 i~~i~k~L~~~~~-~~~~------~~vl~~L~~L~~~~it~e~L~~T~IGk~Vn~LrK~~~~~~v~~lAk~Lv~~WK~~v   86 (103)
T d1wjta_          14 LLRIAKKLEKMVS-RKKT------EGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLL   86 (103)
T ss_dssp             HHHHHHHHHHHHH-TTCC------SSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC-CCCH------HHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999873-5899------99999999987499879999857801969998846997899999999999999998


Q ss_pred             CCCCCC
Q ss_conf             677566
Q 001649          151 VSEALD  156 (1038)
Q Consensus       151 ~~~~~~  156 (1038)
                      +.....
T Consensus        87 ~~~~~~   92 (103)
T d1wjta_          87 DSPRTT   92 (103)
T ss_dssp             CCSCCC
T ss_pred             HHHCCC
T ss_conf             740267
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b4jc1 a.48.4.1 (C:346-426) PC4 and SFRS1-interacting protein, PSIP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure