Citrus Sinensis ID: 001663

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030-----
MPTSFCLLISLASFLILSCAPIIPSSCTPVASRRILHQPFFPLGAVPPSPPPSPAPPPPPPPTRKVPFSDTSTPNNSPFFPTYPSPPPPPSPANFASFPANISSLILPRSPEKPKRSSQKLLILAFASVSSALVVGGILVFFYCRKRRQNGLLYCTADVKSNTTNSNINSNNSSIRIYPPPPANADATRNAHKLRTNRTSSSSEFLYLGTLVNSRAGIDDSTTDTDSRGDTNCVSPELRPLPPLSQQASFKEDQRPRADVASSVAEDEDEEFYSPRVSLGGTGTGSGSRRDFAAVAVDGEGVGGRNSESSSCSCSSTSSRSLTASISPPISLSPRRSEPISPEATHAMPTQSVFAMMSPMESSPDRNIIKSPSLSIASTSPDTRLSPSRFNLLNRHELSSASTSPERELKKDLDNKSSKLFNVLVNNANVGGSPLEKKKDLSPSSSSASSLSSASASPDRFSKKSENASPSRLNESSLSSSPDESPRMLNVFGQISSPVRTNDALEQPISVPPPPPPPPPPPPPPLVLSRQRKQWELPVVSTPAGQAVSQPPALIPPSRPFVMQNTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVNPTLPQVFSEIQGRRQCSSSDDESTSP
cccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccc
cccHHHHHHHHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEHHHcccccccccHHHHHHHHHcccccccccccccccccccccccEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccEEEEEHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHccccccccccccHHHHHHHccccEHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHccccccccccccc
MPTSFCLLISLASFLIlscapiipssctpvasrrilhqpffplgavppspppspappppppptrkvpfsdtstpnnspffptypspppppspanfasfpanisslilprspekpkrsSQKLLILAFASVSSALVVGGILVFFYCRkrrqngllyctadvksnttnsninsnnssiriyppppanadatrnahklrtnrtssssefLYLGTlvnsragiddsttdtdsrgdtncvspelrplpplsqqasfkedqrpradvassvaededeefysprvslggtgtgsgsrrDFAAVAvdgegvggrnsessscscsstssrsltasisppislsprrsepispeathamptqsvfammspmesspdrniikspslsiastspdtrlspsrfnllnrhelssastsperelkkdldnkSSKLFNVLVNNanvggsplekkkdlspssssasslssasaspdrfskksenaspsrlnesslssspdesprmlnvfgqisspvrtndaleqpisvpppppppppppppplvlsrqrkqwelpvvstpagqavsqppalippsrpfvmqnttkvspvelppsskteesveeealkpklkplhwdkvrassdreMVWDHLRSSSFKLNEEMIETLFIvntpsskpsqttprtvlptpnsenrvldpkksQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKeykdesltklgpAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTgnrmnvgtnrgdahaFKLDTLLKLVdvkgadgkttLLHFVVQEIIRtegarqsganqnpnsslsddakcrKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLneamgmdesRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYfhgnsareeahpfRIFMVVRDFLTVLDRVCKEVGminertiisnahkfpvpvnptlpqvfseiqgrrqcsssddestsp
MPTSFCLLISLASFLILSCAPIIPSSCTPVASRRILHQPFFPLGAVPPSPPPSPAPPPPPPPTRKVPFSDTSTPNNSPFFPTYPSPPPPPSPANFASFPANISSLILPRSPEKPKRSSQKLLILAFASVSSALVVGGILVFFYCRKRRQNGLLYCtadvksnttnsninsnnssIRIYPPPPANADATRNAHKLrtnrtsssseflYLGTlvnsragiddsttdtdsrgdtncvspelrplpplsqqasfkedqrpRADVAssvaededeefysprvslggtgtgsgsrrDFAAVAVDgegvggrnsessscscsstssrsltasisppislsprrsePISPEATHAMPTQSVFAMMSPMESSPDRNIIKSpslsiastspdtrlspsrfnllnrhelssastsperelKKDLDNKSSKLFNVLVNNanvggsplekkkdlspssssasslssasaspdrfskksenaspsrlnesslssspdespRMLNVFGQISSPVRTNDALEQPISVPPPPPPPPPPPPPPLVLSRQRKQWELPVVSTPAGQAVSQPPALIPPSRPFVMQNTTkvspvelppsskteesveeealkpklkplhwdkvrassdremvWDHLRSSSFKLNEEMIETLFIvntpsskpsqttprtvlptpnsenrvldpkksqNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMaptkeeerklkeykdesltklgpaeKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRtegarqsganqnpnsslsddaKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSklsrglgnigevvqlneamgmdeSRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERtiisnahkfpvpvNPTLPQVfseiqgrrqcsssddestsp
MPTsfcllislasflilscaPIIPSSCTPVASRRILHQPFFPLGAVppspppspapppppppTRKVPFSDTSTpnnspffptypspppppspanfasfpanISSLILPRSPEKPKRSSQKLLILAFASVSSALVVGGILVFFYCRKRRQNGLLYCTADVKsnttnsninsnnssiRIYPPPPANADATRNAHKLRTNRTSSSSEFLYLGTLVNSRAGIddsttdtdsrgdtNCVSPELRPLPPLSQQASFKEDQRPRADVASSVAEDEDEEFYSPRVSLggtgtgsgsrrDFaavavdgegvggRNsessscscsstssrsltasisppislsprrsepispeaTHAMPTQSVFAMMSPMESSPDRNIIKSPSLSIASTSPDTRLSPSRFNLLNRHELSSASTSPERElkkdldnkssklFNVLVNNANVGGsplekkkdlspssssasslssasaspDRFSKKSENAspsrlnesslssspdesprMLNVFGQISSPVRTNDALEQPISVppppppppppppppLVLSRQRKQWELPVVSTPAGQAVSQPPALIPPSRPFVMQNTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFkldtllklvdvkGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVNPTLPQVFSEIQGRRQCSSSDDESTSP
****FCLLISLASFLILSCAPIIPSSCTPVASRRILHQPFFPL*****************************************************************************LLILAFASVSSALVVGGILVFFYCRKRRQNGLLYCTADV*********************************************FLYLGTLVN****************************************************************************************************************************************************************************************************************NVLV***************************************************************************************************************************************************************************************MVWDHLRSSSFKLNEEMIETLFIV********************************NIAILLRALNVTIEEVCEALLEGNADTLGTELLESL************************GPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIR*************************************************************************************************EEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVNPTLPQVF*******************
**TSFCLLISLASFLILSCAPIIP****PVASRRILHQPFF***********************************************************************************AFASVSSALVVGGILVFFYCRKRRQN*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LHWDKVRASSDREMVWDHLRSSSFKLNEEMIETL****************************LDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQN*NSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEV***************FSESMNRFMKMAEEEIIRIQAH*SVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCK************************************************
MPTSFCLLISLASFLILSCAPIIPSSCTPVASRRILHQPFFPLGAVP**************************PNNSPFFPTYPSPPPPPSPANFASFPANISSLILPR********SQKLLILAFASVSSALVVGGILVFFYCRKRRQNGLLYCTADVKSNTTNSNINSNNSSIRIYPPPPANADATRNAHKLRTNRTSSSSEFLYLGTLVNSRAGID*************CVSPELRPLPPLSQ***************************SPRVSLGGTGTGSGSRRDFAAVAVDGE*************************ISPPISLSPRRSEPISPEATHAMPTQSVFAMMSPMESSPDRNIIKSPSLSI*********SPSRFNLLNRHE**************DLDNKSSKLFNVLVNNANVGGS****************************************************PRMLNVFGQISSPVRTNDALEQPISVPPPPPPPPPPPPPPLVLSRQRKQWELPVV*********QPPALIPPSRPFVMQNTTK*********************KPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTP***********VLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGA**************DDAKCRKLGLQVVSGLSSE***********************RGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVNPTLPQVFSE*****************
**TSFCLLISLASFLILSCAPIIPSSCTPVASRRILHQPFFPLGAVPP****************K***********SPFFPTYPSPPPPPSPANFASFPANISS**LPRSP**PKRSSQKLLILAFASVSSALVVGGILVFFYCRKRR*************************S***************************SSEFLYLGTLVNS***************************************************************************RDFAAVAVDG**************************************************************************************************************************************************************************************************************************************************************************************************KPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTP****************NSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEG**************SDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER****************************************
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPTSFCLLISLASFLILSCAPIIPSSCTPVASRRILHQPFFPLGAVPPSPPPSPAPPPPPPPTRKVPFSDTSTPNNSPFFPTYPSPPPPPSPANFASFPANISSLILPRSPEKPKRSSQKLLILAFASVSSALVVGGILVFFYCRKRRQNGLLYCTADVKSNTTNSNINSNNSSIRIYPPPPANADATRNAHKLRTNRTSSSSEFLYLGTLVNSRAGIDDSTTDTDSRGDTNCVSPELRPLPPLSQQASFKEDQRPRADVASSVAEDEDEEFYSPRVSLGGTGTGSGSRRDFAAVAVDGEGVGGRNSESSSCSCSSTSSRSLTASISPPISLSPRRSEPISPEATHAMPTQSVFAMMSPMESSPDRNIIKSPSLSIASTSPDTRLSPSRFNLLNRHELSSASTSPERELKKDLDNKSSKLFNVLVNNANVGGSPLEKKKDLSPSSSSASSLSSASASPDRFSKKSENASPSRLNESSLSSSPDESPRMLNVFGQISSPVRTNDALEQPISVPPPPPPPPPPPPPPLVLSRQRKQWELPVVSTPAGQAVSQPPALIPPSRPFVMQNTTKVSPVELPPSSKTEESVEEEALKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESExxxxxxxxxxxxxxxxxxxxxRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVNPTLPQVFSEIQGRRQCSSSDDESTSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1035 2.2.26 [Sep-21-2011]
Q9SE971051 Formin-like protein 1 OS= yes no 0.467 0.460 0.755 0.0
Q8S0F0960 Formin-like protein 1 OS= yes no 0.433 0.467 0.726 0.0
O22824894 Formin-like protein 2 OS= no no 0.386 0.447 0.657 1e-159
Q69MT2788 Formin-like protein 15 OS yes no 0.418 0.549 0.626 1e-154
Q10Q99892 Formin-like protein 8 OS= no no 0.480 0.557 0.574 1e-152
Q8H8K7849 Formin-like protein 4 OS= no no 0.457 0.557 0.566 1e-149
Q9FJX6899 Formin-like protein 6 OS= no no 0.4 0.460 0.620 1e-146
Q0D519774 Formin-like protein 13 OS no no 0.399 0.533 0.525 1e-118
Q9MA60884 Formin-like protein 11 OS no no 0.377 0.442 0.522 1e-111
Q94B77900 Formin-like protein 5 OS= no no 0.390 0.448 0.495 1e-107
>sp|Q9SE97|FH1_ARATH Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1 Back     alignment and function desciption
 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/495 (75%), Positives = 416/495 (84%), Gaps = 11/495 (2%)

Query: 535  WELPVVSTPAGQAVSQPPALIPPSRPFVM--QNT-TKVSPVELPPSSKTEESVEEEALKP 591
            W      T     +S+PP+L PPS PFV+  +N     SP+E P +    E+ EE   KP
Sbjct: 538  WGRRSQVTTKADTISRPPSLTPPSHPFVIPSENLPVTSSPMETPETVCASEAAEETP-KP 596

Query: 592  KLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKP--SQTTPRTVLP 649
            KLK LHWDKVRASSDREMVWDHLRSSSFKL+EEMIETLF+  + ++KP  SQTTPR VLP
Sbjct: 597  KLKALHWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQSQTTPRCVLP 656

Query: 650  TPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEE 709
            +PN ENRVLDPKK+QNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEE
Sbjct: 657  SPNQENRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEE 716

Query: 710  ERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEA 769
            ERKLK Y D+S  KLG AEKFLKA+LD+PFAFKRVDAMLY+ NFESEVEYLKKSFETLEA
Sbjct: 717  ERKLKAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANFESEVEYLKKSFETLEA 776

Query: 770  ACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHF 829
            ACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHF
Sbjct: 777  ACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHF 836

Query: 830  VVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLS 889
            VVQEIIR EG R SG     N++ +DD KCRKLGLQVVS L SELSNVKKAAAMDS+VLS
Sbjct: 837  VVQEIIRAEGTRLSG-----NNTQTDDIKCRKLGLQVVSSLCSELSNVKKAAAMDSEVLS 891

Query: 890  SEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSL 949
            S VSKLS+G+  I E +Q+   +  + + ++FSESM  F+K AEEEIIR+QA ESVALSL
Sbjct: 892  SYVSKLSQGIAKINEAIQVQSTITEESNSQRFSESMKTFLKRAEEEIIRVQAQESVALSL 951

Query: 950  VKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVN 1009
            VKEITEYFHGNSA+EEAHPFRIF+VVRDFL V+DRVCKEVGMINERT++S+AHKFPVPVN
Sbjct: 952  VKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERTMVSSAHKFPVPVN 1011

Query: 1010 PTLPQVFSEIQGRRQ 1024
            P +PQ    + GRRQ
Sbjct: 1012 PMMPQPLPGLVGRRQ 1026
Might be involved in the organization and polarity of the actin cytoskeleton. Involved in polar pollen cell growth process by maintaining tip-focused cell membrane expansion for the polar extension of pollen tubes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8S0F0|FH1_ORYSJ Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1 Back     alignment and function description
>sp|O22824|FH2_ARATH Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=3 SV=1 Back     alignment and function description
>sp|Q69MT2|FH15_ORYSJ Formin-like protein 15 OS=Oryza sativa subsp. japonica GN=FH15 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q99|FH8_ORYSJ Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1 Back     alignment and function description
>sp|Q8H8K7|FH4_ORYSJ Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1 Back     alignment and function description
>sp|Q9FJX6|FH6_ARATH Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1 Back     alignment and function description
>sp|Q0D519|FH13_ORYSJ Formin-like protein 13 OS=Oryza sativa subsp. japonica GN=FH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA60|FH11_ARATH Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1 Back     alignment and function description
>sp|Q94B77|FH5_ARATH Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1035
255583387 1140 conserved hypothetical protein [Ricinus 0.618 0.561 0.685 0.0
224129328532 predicted protein [Populus trichocarpa] 0.484 0.941 0.831 0.0
2978356861054 predicted protein [Arabidopsis lyrata su 0.905 0.888 0.547 0.0
3565225321026 PREDICTED: uncharacterized protein LOC10 0.478 0.482 0.813 0.0
3565602921079 PREDICTED: uncharacterized protein LOC10 0.478 0.458 0.812 0.0
4495060991079 PREDICTED: uncharacterized LOC101211678 0.480 0.460 0.780 0.0
4494534331076 PREDICTED: uncharacterized protein LOC10 0.480 0.461 0.780 0.0
152308451051 formin-like protein 1 [Arabidopsis thali 0.467 0.460 0.755 0.0
1107418021047 formin-like protein AHF1 [Arabidopsis th 0.467 0.462 0.755 0.0
3565685391003 PREDICTED: formin-like protein 1-like [G 0.471 0.486 0.738 0.0
>gi|255583387|ref|XP_002532454.1| conserved hypothetical protein [Ricinus communis] gi|223527844|gb|EEF29940.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/726 (68%), Positives = 547/726 (75%), Gaps = 86/726 (11%)

Query: 370  KSPSLSIASTSPDTRL--SPSRFNLLNRH----ELSSASTSPER--------ELKKDLDN 415
            KSP LS ASTSPDT +  SP   N L R      LSSA+TSP+R         +  DLD 
Sbjct: 419  KSPVLSSASTSPDTSIASSPRISNALGRDVRSPYLSSATTSPDRISEKIPSPRISNDLDR 478

Query: 416  KSSKLF---------NVLVNNA-------NVG------GSPLEKKKDLSPSSSSASSLSS 453
              S  F          VL NN+       NV       G  L+      P     S++SS
Sbjct: 479  NVSSSFLSSASPSPGRVLDNNSLVYPRISNVSSASPSPGRVLDNNPLFYPR---ISNVSS 535

Query: 454  ASASPDRFSKKSENASPSRLNESSLS-------------------SSPDESPRM---LNV 491
            AS SP R    +    P   N S  S                   +SPDESPR+   LN 
Sbjct: 536  ASPSPGRVLDNNPLVYPGISNVSDQSKKSSLVSSASSSPDRRLEKASPDESPRISSGLN- 594

Query: 492  FGQISSPVRTNDALEQPISVPPPPPPPPP------------PPPPPLVLSRQRKQWELPV 539
              +ISS       LEQPISV PPPPPPPP            PP PP     Q++ WE PV
Sbjct: 595  -AKISS------VLEQPISVTPPPPPPPPPPPPPLQQQRYSPPAPPA----QQRHWESPV 643

Query: 540  VSTPAGQAVSQPPALIPPSRPFVMQNTTK-VSPVELPPSSKTEESVEEEALKPKLKPLHW 598
             STP GQ++S+PP LIPPSRPFV+Q T+  +SP+ELPPSSK  E  EE   KPKLKPLHW
Sbjct: 644  ASTPTGQSISRPPVLIPPSRPFVLQGTSSMISPIELPPSSKPTEDFEETPSKPKLKPLHW 703

Query: 599  DKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVL 658
            DKVRASSDREMVWD LRSSSFKLNEEM+E+LF+VNTP  KP+QTTPR+V+P+ N +NRVL
Sbjct: 704  DKVRASSDREMVWDQLRSSSFKLNEEMMESLFVVNTPYQKPNQTTPRSVVPSLNQDNRVL 763

Query: 659  DPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKD 718
            DPKK+QNIAILLRALNVTIEEVCEALLEGN +TLGTELLESLLKMAPTKEEERKLKEYKD
Sbjct: 764  DPKKAQNIAILLRALNVTIEEVCEALLEGNTETLGTELLESLLKMAPTKEEERKLKEYKD 823

Query: 719  ESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSR 778
            +S TKLG AEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLK+SFETLEAACEELRNSR
Sbjct: 824  DSPTKLGHAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKRSFETLEAACEELRNSR 883

Query: 779  MFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTE 838
            MFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTE
Sbjct: 884  MFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTE 943

Query: 839  GARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRG 898
            GAR SG NQ PNS+ S+DAKCRKLGLQVVSGLSSEL+NVKKAAAMDSDVLSS+VSKLS+G
Sbjct: 944  GARLSGLNQTPNSTSSEDAKCRKLGLQVVSGLSSELTNVKKAAAMDSDVLSSDVSKLSKG 1003

Query: 899  LGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958
            + NI EVV+LNE MG+DES +KFSE+M RFMKMAEEEIIRIQAHESVALSLVKEITEYFH
Sbjct: 1004 IENINEVVRLNETMGLDESSQKFSEAMERFMKMAEEEIIRIQAHESVALSLVKEITEYFH 1063

Query: 959  GNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVNPTLPQVFSE 1018
            GNSA+EEAHPFRIFMVVRDFL VLDRVCKEVGMINERTI+S+AHKFP+PVNP L Q    
Sbjct: 1064 GNSAKEEAHPFRIFMVVRDFLGVLDRVCKEVGMINERTIVSSAHKFPIPVNPMLAQAVVG 1123

Query: 1019 IQGRRQ 1024
               ++Q
Sbjct: 1124 HDAKKQ 1129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129328|ref|XP_002320557.1| predicted protein [Populus trichocarpa] gi|222861330|gb|EEE98872.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297835686|ref|XP_002885725.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331565|gb|EFH61984.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356522532|ref|XP_003529900.1| PREDICTED: uncharacterized protein LOC100800333 [Glycine max] Back     alignment and taxonomy information
>gi|356560292|ref|XP_003548427.1| PREDICTED: uncharacterized protein LOC100802678 [Glycine max] Back     alignment and taxonomy information
>gi|449506099|ref|XP_004162652.1| PREDICTED: uncharacterized LOC101211678 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453433|ref|XP_004144462.1| PREDICTED: uncharacterized protein LOC101211678 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15230845|ref|NP_189177.1| formin-like protein 1 [Arabidopsis thaliana] gi|75274615|sp|Q9SE97.1|FH1_ARATH RecName: Full=Formin-like protein 1; Short=AtFH1; Short=AtFORMIN-8; Flags: Precursor gi|6503010|gb|AAF14548.1| formin-like protein AHF1 [Arabidopsis thaliana] gi|9279730|dbj|BAB01320.1| formin-like protein [Arabidopsis thaliana] gi|19423899|gb|AAL87275.1| putative formin protein AHF1 [Arabidopsis thaliana] gi|23296692|gb|AAN13148.1| putative formin protein AHF1 [Arabidopsis thaliana] gi|332643496|gb|AEE77017.1| formin-like protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110741802|dbj|BAE98844.1| formin-like protein AHF1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356568539|ref|XP_003552468.1| PREDICTED: formin-like protein 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1035
TAIR|locus:20944931051 AFH1 "formin homology 1" [Arab 0.471 0.464 0.734 2.6e-226
TAIR|locus:2043989894 AT2G43800 [Arabidopsis thalian 0.455 0.526 0.575 2.6e-154
TAIR|locus:2158576899 FH6 "formin homolog 6" [Arabid 0.442 0.509 0.561 3.8e-141
TAIR|locus:2079807884 AT3G05470 [Arabidopsis thalian 0.425 0.497 0.471 2.7e-103
TAIR|locus:2172129900 Fh5 "formin homology5" [Arabid 0.424 0.487 0.447 6.1e-95
TAIR|locus:2156248782 AT5G48360 [Arabidopsis thalian 0.261 0.346 0.496 4.2e-91
TAIR|locus:2079711841 AT3G07540 [Arabidopsis thalian 0.359 0.442 0.375 4.4e-72
TAIR|locus:2025981929 AT1G59910 [Arabidopsis thalian 0.426 0.474 0.366 5.3e-71
TAIR|locus:2020568760 FH8 "formin 8" [Arabidopsis th 0.418 0.569 0.354 3.7e-66
UNIPROTKB|E7ERW81215 DIAPH1 "Protein diaphanous hom 0.273 0.232 0.299 2.2e-29
TAIR|locus:2094493 AFH1 "formin homology 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1797 (637.6 bits), Expect = 2.6e-226, Sum P(5) = 2.6e-226
 Identities = 367/500 (73%), Positives = 412/500 (82%)

Query:   540 VSTPAGQAVSQPPALIPPSRPFVM--QNTTKVS-PVELPPSSKTEESVEEEALKPKLKPL 596
             V+T A   +S+PP+L PPS PFV+  +N    S P+E P +    E+ EE   KPKLK L
Sbjct:   544 VTTKA-DTISRPPSLTPPSHPFVIPSENLPVTSSPMETPETVCASEAAEETP-KPKLKAL 601

Query:   597 HWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKP--SQTTPRTVLPTPNSE 654
             HWDKVRASSDREMVWDHLRSSSFKL+EEMIETLF+  + ++KP  SQTTPR VLP+PN E
Sbjct:   602 HWDKVRASSDREMVWDHLRSSSFKLDEEMIETLFVAKSLNNKPNQSQTTPRCVLPSPNQE 661

Query:   655 NRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLK 714
             NRVLDPKK+QNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLK
Sbjct:   662 NRVLDPKKAQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLK 721

Query:   715 EYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEEL 774
              Y D+S  KLG AEKFLKA+LD+PFAFKRVDAMLY+ NFESEVEYLKKSFETLEAACEEL
Sbjct:   722 AYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDAMLYVANFESEVEYLKKSFETLEAACEEL 781

Query:   775 RNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQEI 834
             RNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAF            GADGKTTLLHFVVQEI
Sbjct:   782 RNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEI 841

Query:   835 IRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSK 894
             IR EG R SG     N++ +DD KCRKLGLQVVS L SELSNVKKAAAMDS+VLSS VSK
Sbjct:   842 IRAEGTRLSG-----NNTQTDDIKCRKLGLQVVSSLCSELSNVKKAAAMDSEVLSSYVSK 896

Query:   895 LSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEIT 954
             LS+G+  I E +Q+   +  + + ++FSESM  F+K AEEEIIR+QA ESVALSLVKEIT
Sbjct:   897 LSQGIAKINEAIQVQSTITEESNSQRFSESMKTFLKRAEEEIIRVQAQESVALSLVKEIT 956

Query:   955 EYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTIISNAHKFPVPVNPTLPQ 1014
             EYFHGNSA+EEAHPFRIF+VVRDFL V+DRVCKEVGMINERT++S+AHKFPVPVNP +PQ
Sbjct:   957 EYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERTMVSSAHKFPVPVNPMMPQ 1016

Query:  1015 VFSEIQGRRQCSSSDDESTS 1034
                 + GRRQ SSS   S++
Sbjct:  1017 PLPGLVGRRQSSSSSSSSST 1036
GO:0003779 "actin binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0016020 "membrane" evidence=IDA
GO:0030036 "actin cytoskeleton organization" evidence=IDA;TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0051015 "actin filament binding" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0045010 "actin nucleation" evidence=IDA
GO:0051016 "barbed-end actin filament capping" evidence=IDA
TAIR|locus:2043989 AT2G43800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158576 FH6 "formin homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079807 AT3G05470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172129 Fh5 "formin homology5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156248 AT5G48360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079711 AT3G07540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025981 AT1G59910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020568 FH8 "formin 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E7ERW8 DIAPH1 "Protein diaphanous homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8S0F0FH1_ORYSJNo assigned EC number0.72640.43380.4677yesno
Q9SE97FH1_ARATHNo assigned EC number0.75550.46760.4605yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0012038601
hypothetical protein (532 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1035
pfam02181372 pfam02181, FH2, Formin Homology 2 Domain 1e-144
smart00498392 smart00498, FH2, Formin Homology 2 Domain 1e-141
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 8e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 8e-04
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 9e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
pfam07174297 pfam07174, FAP, Fibronectin-attachment protein (FA 0.001
pfam04652315 pfam04652, DUF605, Vta1 like 0.001
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.002
pfam00859295 pfam00859, CTF_NFI, CTF/NF-I family transcription 0.002
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.003
pfam05308248 pfam05308, Mito_fiss_reg, Mitochondrial fission re 0.004
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain Back     alignment and domain information 
 Score =  435 bits (1122), Expect = e-144
 Identities = 168/396 (42%), Positives = 230/396 (58%), Gaps = 33/396 (8%)

Query: 590 KPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQ--TTPRTV 647
           K KLKPLHWDKV  + DR  VWD L   SF+ + ++ E   + +  + K     +  ++ 
Sbjct: 8   KKKLKPLHWDKVNPAQDRGTVWDELDEESFEKDLDLSELEELFSAKAKKKKSKKSEKKSS 67

Query: 648 LPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTK 707
                 E  VLDPK+SQNIAILLR L +  EE+ +A+LE +   LG ELLE+LLKMAPTK
Sbjct: 68  SKKKKKEISVLDPKRSQNIAILLRKLKLPPEEIVQAILEMDESVLGLELLENLLKMAPTK 127

Query: 708 EEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETL 767
           EE +KLKEYK +  +KLG AE+FL  +  +P   +R++A+L+ + FE EVE LK S ETL
Sbjct: 128 EELKKLKEYKGD-PSKLGRAEQFLLELSKIPRLEERLEALLFKSTFEEEVEELKPSLETL 186

Query: 768 EAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLL 827
           EAA EELR SR F KLLE +L  GN MN GT RG+A  FKL +LLKL D K  D KTTLL
Sbjct: 187 EAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFKLSSLLKLSDTKSTDNKTTLL 246

Query: 828 HFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDV 887
           H++V+ I                             L  +   SSELS+V+KAA +D + 
Sbjct: 247 HYLVKIIRE--------------------------KLPDLLDFSSELSHVEKAAKVDLEQ 280

Query: 888 LSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVAL 947
           L  +V +L +GL  +   ++L+          KF E M  F++ AEE++ ++++    A+
Sbjct: 281 LEKDVKELEKGLKKLERELELSALDE--HPDDKFVEKMKEFLEEAEEKLDKLESLLKEAM 338

Query: 948 SLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLD 983
            L KE+TEYF      +E  P   F ++RDFL +  
Sbjct: 339 ELFKELTEYF--GEDPKETSPEEFFKILRDFLRMFK 372

Length = 372
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1035
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 100.0
PF02181370 FH2: Formin Homology 2 Domain; InterPro: IPR015425 100.0
KOG1922833 consensus Rho GTPase effector BNI1 and related for 100.0
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 100.0
KOG1925 817 consensus Rac1 GTPase effector FHOS [Signal transd 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.56
smart00498432 FH2 Formin Homology 2 Domain. FH proteins control 98.04
KOG1922833 consensus Rho GTPase effector BNI1 and related for 96.19
PF01299306 Lamp: Lysosome-associated membrane glycoprotein (L 88.83
PF0103464 Syndecan: Syndecan domain; InterPro: IPR001050 The 87.7
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 87.43
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 86.14
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 84.0
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 83.46
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 82.44
PF15102146 TMEM154: TMEM154 protein family 80.1
PF04478154 Mid2: Mid2 like cell wall stress sensor; InterPro: 80.09
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information 
Probab=100.00  E-value=3.9e-69  Score=621.63  Aligned_cols=371  Identities=40%  Similarity=0.617  Sum_probs=335.1

Q ss_pred             cCCCcccccccccccCCCCcccccccccccccCCHHHHHHHhhccCCCCCCCCC--CCCC-CCCCCCCCccccChhHHHH
Q 001663          589 LKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPSSKPSQT--TPRT-VLPTPNSENRVLDPKKSQN  665 (1035)
Q Consensus       589 pK~KLK~LhW~KI~~~~~k~TIW~~l~~~~~~LD~~~LE~LF~~k~~~~k~K~~--t~r~-v~~k~~q~isVLD~KRAQN  665 (1035)
                      |++|||+|||+||...++++|||+++++.. ++|+++||++|+.+......+..  ..+. ...+..++++|||+||+||
T Consensus         6 P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~krs~n   84 (432)
T smart00498        6 PKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKRSQN   84 (432)
T ss_pred             CCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhHHhh
Confidence            789999999999999989999999999865 79999999999987654332221  1111 1233457799999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhhcccccCCChHHHHHHHHhCcccHHHHHH
Q 001663          666 IAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVD  745 (1035)
Q Consensus       666 IsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lkey~gd~p~~L~~aEqFll~L~~IP~~~~RL~  745 (1035)
                      |+|+|++|+++.++|++||+.||...|+.|.|+.|++++||.||+++|++|.|+++..|+++|||+++|++||+|.+||+
T Consensus        85 i~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~Rl~  164 (432)
T smart00498       85 LAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLN  164 (432)
T ss_pred             HHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998867899999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhccccccCCCCCceeeeccccccccccccCCCCCcc
Q 001663          746 AMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTT  825 (1035)
Q Consensus       746 allfk~~F~~~l~~L~~~L~~l~~A~~eLr~S~~L~~LL~iILaiGNfLN~gt~rG~A~GFkLsSL~KL~dtKs~D~k~T  825 (1035)
                      ||+|+.+|++.+++|+..|++|..||++|++|+.|++||++||++|||||+|+.||+|+||+|++|.||.|||++|+++|
T Consensus       165 ~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~t  244 (432)
T smart00498      165 ALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADNKTT  244 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccCCCCCCCCCCchhHHHhhcccccccccchhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 001663          826 LLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRGLGNIGEV  905 (1035)
Q Consensus       826 LLhyLv~~I~r~e~~~ls~~n~~~~s~~~dD~~~~kl~lp~V~~Ls~EL~~VkkAAkVdle~L~~dv~kLekgL~kI~ee  905 (1035)
                      ||||||+.|.+++                          +.+.+|.+||.+|..|++++ +.|..++++|+++++.++..
T Consensus       245 LLhylv~~i~~~~--------------------------p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~  297 (432)
T smart00498      245 LLHFLVKIIRKKY--------------------------PDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETD  297 (432)
T ss_pred             HHHHHHHHHHHhC--------------------------hhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            9999999887653                          23567889999999999999 99999999999999999865


Q ss_pred             HHHhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCcchhhHHHHHHHHHHHHH
Q 001663          906 VQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRV  985 (1035)
Q Consensus       906 lq~~e~~~~~e~~dkF~e~M~~Fl~~Ae~eI~~Lq~~~~~a~~~~kel~eYFGED~~kee~~P~~fF~il~dFl~~~dka  985 (1035)
                      +.....  .....|+|.++|..|+..|+.+++.|+..+.++.+.|+++++||||++.+  ..+.+||.+|.+|+..|.+|
T Consensus       298 ~~~l~~--~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~~F~~~f~ka  373 (432)
T smart00498      298 LGGLSD--PENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFNEFLKEFSKA  373 (432)
T ss_pred             HHhcCC--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHHHH
Confidence            543322  12335899999999999999999999999999999999999999999876  46789999999999999999


Q ss_pred             HHHHHH
Q 001663          986 CKEVGM  991 (1035)
Q Consensus       986 ~kEv~k  991 (1035)
                      ++|+.+
T Consensus       374 ~~en~~  379 (432)
T smart00498      374 AEENIK  379 (432)
T ss_pred             HHHHHH
Confidence            998853

FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00498 FH2 Formin Homology 2 Domain Back     alignment and domain information
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear Back     alignment and domain information
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF15102 TMEM154: TMEM154 protein family Back     alignment and domain information
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1035
3o4x_E467 Crystal Structure Of Complex Between Amino And Carb 8e-25
3obv_E457 Autoinhibited Formin Mdia1 Structure Length = 457 2e-24
1v9d_A340 Crystal Structure Of The Core Fh2 Domain Of Mouse M 2e-24
4eah_A402 Crystal Structure Of The Formin Homology 2 Domain O 2e-15
2j1d_G483 Crystallization Of Hdaam1 C-Terminal Fragment Lengt 4e-15
2z6e_A419 Crystal Structure Of Human Daam1 Fh2 Length = 419 5e-15
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 467 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 31/330 (9%)
Query: 659 DPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKLKEYKD 718
           D K +QN++I L +  +  +E+   +LE N   L   ++++L+K  P  E+ + L E K+
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 719 ESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSR 778
           E    L  +E+F   +  VP    R++A+L+   F  +VE +K    ++ AACEELR S 
Sbjct: 163 E-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 221
Query: 779 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQEIIRTE 838
            F  LLE  L  GN MN G+    A  F             AD K TLLHF+ +      
Sbjct: 222 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELC---- 277
Query: 839 GARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVSKLSRG 898
                  N +P                 V     EL++V+KA+ + ++ L   + ++ + 
Sbjct: 278 ------ENDHPE----------------VLKFPDELAHVEKASRVSAENLQKSLDQMKKQ 315
Query: 899 LGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH 958
           + ++   VQ N     DE + KF E M  F+K A+E+  +++   S   +L KE+ +YF 
Sbjct: 316 IADVERDVQ-NFPAATDE-KDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV 373
Query: 959 GNSAREEAHPFRIFMVVRDFLTVLDRVCKE 988
            +  +     F  FM + +F  +  +  KE
Sbjct: 374 FDPKKLSVEEF--FMDLHNFRNMFLQAVKE 401
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure Length = 457 Back     alignment and structure
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1 Length = 340 Back     alignment and structure
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3 Bound To Actin Length = 402 Back     alignment and structure
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment Length = 483 Back     alignment and structure
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2 Length = 419 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1035
3obv_E457 Protein diaphanous homolog 1; autoinhibition, acti 1e-114
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 1e-108
1v9d_A340 Diaphanous protein homolog 1; helix bundle, protei 1e-106
1ux5_A411 BNI1 protein; structural protein, FH2 actin cytosk 8e-92
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D Length = 457 Back     alignment and structure
 Score =  359 bits (922), Expect = e-114
 Identities = 112/414 (27%), Positives = 189/414 (45%), Gaps = 39/414 (9%)

Query: 590 KPKLKPLHWDKVRASS-DREMVWDHLRSSSFKLNEEM--IETLFIVNTPSSKPS-----Q 641
           + +L+  +W K  A    ++  W  ++   F+ NE    +   F   T +SK        
Sbjct: 7   EVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGG 66

Query: 642 TTPRTVLPTPNSENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLL 701
              ++V      E +VLD K +QN++I L +  +  +E+   +LE N   L   ++++L+
Sbjct: 67  EEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLI 126

Query: 702 KMAPTKEEERKLKEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLK 761
           K  P  E+ + L E K+E    L  +E+F   +  VP    R++A+L+   F  +VE +K
Sbjct: 127 KQMPEPEQLKMLSELKEE-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIK 185

Query: 762 KSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGAD 821
               ++ AACEELR S  F  LLE  L  GN MN G+    A  F +  L KL D K AD
Sbjct: 186 PEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSAD 245

Query: 822 GKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAA 881
            K TLLHF+ +               +P                 V     EL++V+KA+
Sbjct: 246 QKMTLLHFLAELCEN----------DHPE----------------VLKFPDELAHVEKAS 279

Query: 882 AMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQA 941
            + ++ L   + ++ + + ++   VQ   A   ++   KF E M  F+K A+E+  +++ 
Sbjct: 280 RVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD--KFVEKMTSFVKDAQEQYNKLRM 337

Query: 942 HESVALSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINER 995
             S   +L KE+ +YF  +  +     F  FM + +F  +  +  KE     E 
Sbjct: 338 MHSNMETLYKELGDYFVFDPKKLSVEEF--FMDLHNFRNMFLQAVKENQKRRET 389
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1 Length = 340 Back     alignment and structure
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A Length = 411 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1035
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 1e-89
d1ux5a_411 a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces 3e-85
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Diaphanous protein homolog 1, dia1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  288 bits (738), Expect = 1e-89
 Identities = 98/335 (29%), Positives = 162/335 (48%), Gaps = 31/335 (9%)

Query: 654 ENRVLDPKKSQNIAILLRALNVTIEEVCEALLEGNADTLGTELLESLLKMAPTKEEERKL 713
           E +VLD K +QN++I L +  +  +E+   +LE N   L   ++++L+K  P  E+ + L
Sbjct: 3   ELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 62

Query: 714 KEYKDESLTKLGPAEKFLKAVLDVPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEE 773
            E K+E    L  +E+F   +  VP    R++A+L+   F  +VE +K    ++ AACEE
Sbjct: 63  SELKEE-YDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 121

Query: 774 LRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQE 833
           LR S  F  LLE  L  GN MN G+    A  F +  L KL D K AD K TLLHF+ + 
Sbjct: 122 LRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAEL 181

Query: 834 IIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKAAAMDSDVLSSEVS 893
                         +P                 V     EL++V+KA+ + ++ L   + 
Sbjct: 182 CEN----------DHPE----------------VLKFPDELAHVEKASRVSAENLQKSLD 215

Query: 894 KLSRGLGNIGEVVQLNEAMGMDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEI 953
           ++ + + ++   VQ   A   ++   KF E M  F+K A+E+  +++   S   +L KE+
Sbjct: 216 QMKKQIADVERDVQNFPAATDEKD--KFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKEL 273

Query: 954 TEYFHGNSAREEAHPFRIFMVVRDFLTVLDRVCKE 988
            +YF  +  +     F  FM + +F  +  +  KE
Sbjct: 274 GDYFVFDPKKLSVEEF--FMDLHNFRNMFLQAVKE 306
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 411 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1035
d1ux5a_411 Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1v9da_332 Diaphanous protein homolog 1, dia1 {Mouse (Mus mus 100.0
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Formin homology 2 domain (FH2 domain)
superfamily: Formin homology 2 domain (FH2 domain)
family: Formin homology 2 domain (FH2 domain)
domain: Bni1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=525.62  Aligned_cols=369  Identities=18%  Similarity=0.258  Sum_probs=319.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             4787532101011347887641112456634------6789999987510699999999999877899999741038457
Q 001663          589 LKPKLKPLHWDKVRASSDREMVWDHLRSSSF------KLNEEMIETLFIVNTPSSKPSQTTPRTVLPTPNSENRVLDPKK  662 (1035)
Q Consensus       589 pk~KLK~LhW~KI~~~~~k~TIW~~l~~~~~------~lDed~LE~LF~~k~~~~k~k~~~~r~~~~~~~k~isVLD~KR  662 (1035)
                      |+.|||+|||+||...  ++|||+++.+..+      .+|.+.||++|+++......   .++   .+..+.++|||+||
T Consensus         5 P~~klK~l~W~ki~~~--~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~---~~~---~~~~~~~~lLd~kr   76 (411)
T d1ux5a_           5 PHKKLKQLHWEKLDCT--DNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLA---SKR---KEDLQKITFLSRDI   76 (411)
T ss_dssp             CSSCBCCCCCCCCSSC--CSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHH---HHH---HHTTTSBCCSCHHH
T ss_pred             CCCCCCCCCCEECCCC--CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC---CCC---CCCCCCCCCCCHHH
T ss_conf             9999989776159998--988200204410036788663099999986447777776---666---66666200176789


Q ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHCCCCCCCCHHHHHHH--------------HHHCCCHHHHHHHHHHHC-----CCCC
Q ss_conf             99899988624-999899999998289899898999999--------------960999699999874101-----3346
Q 001663          663 SQNIAILLRAL-NVTIEEVCEALLEGNADTLGTELLESL--------------LKMAPTKEEERKLKEYKD-----ESLT  722 (1035)
Q Consensus       663 AQNIaI~L~kl-kls~eeI~~AIl~~D~~~L~~E~Le~L--------------lk~lPt~EE~~~Lke~~g-----d~p~  722 (1035)
                      +|||+|+|++| +++.++|++||+.||.++|+.+.+..+              .+++|+.+|.+.+++|.+     ++.+
T Consensus        77 ~qni~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~  156 (411)
T d1ux5a_          77 SQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPN  156 (411)
T ss_dssp             HHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCST
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHH
T ss_conf             99998999870699999999999836854248789999983021013479999981799378999999985144547845


Q ss_pred             CCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89938899999818--4468989999999997699999999989999999999982188999999999715434567888
Q 001663          723 KLGPAEKFLKAVLD--VPFAFKRVDAMLYITNFESEVEYLKKSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNR  800 (1035)
Q Consensus       723 ~L~~aEqFL~~L~~--IP~l~~RL~allfk~~F~~~~~~L~~~L~~l~~A~eeLr~S~~L~~LL~iILaiGNfLN~Gt~r  800 (1035)
                      .|+.+|||+++|+.  |+++..||+||+|+.+|++.+.++.+.+..+..||++|++|+.|+.+|++||++|||||+|+  
T Consensus       157 ~L~~~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~--  234 (411)
T d1ux5a_         157 DLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS--  234 (411)
T ss_dssp             TBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGG--
T ss_pred             HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC--
T ss_conf             438799999999862334499999999999999999999999999999999999957679999999999860625899--


Q ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             84344403230010123578997207899999999830343568989999998304787530665103410003447996
Q 001663          801 GDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARQSGANQNPNSSLSDDAKCRKLGLQVVSGLSSELSNVKKA  880 (1035)
Q Consensus       801 G~A~GFkLsSL~KL~dvKs~D~k~TLLhyIv~~Iir~e~~~ls~~n~~~~s~f~dD~~~~~lgL~~V~~Ls~EL~~VkkA  880 (1035)
                      |+|+||+|++|.||.++|++|+++|||||||+.+.+..                          +.+..|.+||..|..|
T Consensus       235 ~~A~GFkL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~--------------------------p~l~~~~~el~~v~~a  288 (411)
T d1ux5a_         235 KQAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNY--------------------------PSFNDFLSELEPVLDV  288 (411)
T ss_dssp             GCCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHC--------------------------GGGGGHHHHTHHHHHH
T ss_pred             CCCCEEEHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHC--------------------------CHHHCCHHHHHHHHHH
T ss_conf             87123523898876521179998018999999999869--------------------------0753328778889988


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             127979999999999997999999999754128--750246689999999999999999999999999999999997606
Q 001663          881 AAMDSDVLSSEVSKLSRGLGNIGEVVQLNEAMG--MDESRKKFSESMNRFMKMAEEEIIRIQAHESVALSLVKEITEYFH  958 (1035)
Q Consensus       881 Akvdle~L~~ev~kL~~~L~ki~~~lq~~e~~~--~~e~~d~F~e~M~~Fl~~Ae~ei~~Lq~~~~~a~~~~kel~~YFG  958 (1035)
                      ++++++++..++.+|.+++..++.+++......  .....++|...|..|+..|+.++..++..+.++.+.|++++.|||
T Consensus       289 ~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfG  368 (411)
T d1ux5a_         289 VKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYG  368 (411)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             61899999999999999999999999862025400025111699999999999999999999999999999999999838


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998877578110458999999999999999988521
Q 001663          959 GNSAREEAHPFRIFMVVRDFLTVLDRVCKEVGMINE  994 (1035)
Q Consensus       959 ED~~kee~~P~~fF~il~dFl~~ldka~kEi~k~~e  994 (1035)
                      ||+... ..+.+||++|.+|+..|++|++|+.+..+
T Consensus       369 Ed~~~~-~~~~~fF~~~~~F~~~~~~a~~en~~~~e  403 (411)
T d1ux5a_         369 EDSGDK-FAKISFFKKFADFINEYKKAQAQNLAAEE  403 (411)
T ss_dssp             CCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998887-89999999999999999999999999999
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure