Citrus Sinensis ID: 001668

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030----
MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKTAAGVEDDDCRVITEKKVFQHIREKARNFPISTASNNAHSASSEPLILTRKRFYEQRLQLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCRTFRKLNLSPIASVAGTAEPSSSIKMLSFDISMMKKQKCSPNTSTRQCCPLPLASTGKTKEVDSFLGFESVFSFL
ccccccHHHccccccEEEEEEEcccccHHHHHHHHcccccccccccccccccccccccccEEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHcEEEEcccccHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEccccEEccccccEEEccHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHcccccEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccccEEEccccccHHccccccHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccEEcccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHcccHHHHHHHHccccccHHHHHHHHHccccEEEEEEEEEEEccccccEEEEEEEEEccccccccccEEEEEEEEEcccEEEEEEEEccccccccEEEEEEEcccccccEEEEEEEEEccEEEcEEEEEEEEEEcccccccccccccccccccccccccccccccHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHccccEEEEEEccccHcHHHHHHHHcccccccEccccccccccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHcccEEEcccccHHHHHHHHHHHHcccEEEEEEEccEEcccccccEEEEEEccEEEccccccEEcccHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHccHHEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEcccHHHHHHEEEEEHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHccccccHHHHHHHHHcccccHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccccccccccccEEEEEEEcccccEEEEEEEEEEEcccccccEEEEEEccccccccEEEEEEEccHcccccEEEEEEEEcccccccHcccccEcccccccccEEEccccccccccccHHHHcccHHHHHHccccccccccccccccccccccccccccEEEccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccHHcccccccccccccHHHHHHHHHHccccccccccccccEEEEEEccccccccccccEEEEcccccccHHHccccccHHHHHHHHHHHccccHHHcccccccccccccEccccHccccccccccccccccccccccHHHcccEEEEcccccccccccccEEEEEcccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEccccccccHHHHccc
mlacnpemkssslASVRFLAVSATIPNIEDIAEWLNVPVQGIKRfgeemrpvkltTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAmtygysnpfikdREQQERLREASLSCSDKQMQSYILYGVgyhngglclkdrnlieGLFLKGDVQVLCTTntlahginlpahTVVIKSTQYFNKEKGLYMEHDRSTILQMcgragrppfndtgtVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMkknpqnysvrKVISRDRIEKHMQEVCVQKVDELSCHQMiwtdedgfllkpqepgrlmtKYYLKFDTMKyimqtpvncgledalhtVCHAEEIAWIQLRRNEKKLLNVinidkdgrlrfhingdkgkrKKRIQTREEKIFVLANdcligdpsvhdlsltqdmnsistnGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRlwddspyllkqlpgigMVTAKALHSMGiksfetlaeadprrieivtgrkypfgnhikesllslppkvdmkieeikcqgqgKSKLLITLTRLSQSVQSTKRHYADMIVGAeennmvlfhekirvdefsspysvtvlssnpqqgkltvkADLIFEEYIGVDIHQKLVLVKEsnsnvnrkcghkqsplfhtpeevcviedenetaaqtpAQEIDNLLsstmedssmpsfslldedlgegktaagvedddcrviTEKKVFQHIREKArnfpistasnnahsassepliLTRKRFYEQRLQlhdeldvpeetegsifpratllnpssgsteaelkehgfnssltaagnlgtinllddtgafslpkffmfedtvpsqyeectsktltkSTIFEHIRKksknfpvfnsnisktmesdsaiqtnehfpanqseFCIAasdvtkdansdavlrdgstisdmefgaldknandnkvctkqnhnivsgsccrtfrklnlspiasvagtaepsssikMLSFDISmmkkqkcspntstrqccplplastgktkevdsflgfesVFSFL
mlacnpemkssslaSVRFLAVSATIPNIEDIAEWLNVPVQGIKrfgeemrpvKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLahginlpahtvvIKSTQYFNKEKGLYMEHDRSTILQMCgragrppfndTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRmkknpqnysvRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEdgfllkpqepgRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLnvinidkdgrlrfhingdkgkrkkriqTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFetlaeadprrieivtgrkypfgnhIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTvlssnpqqgklTVKADLIFEEYIGVDIHQKLVLVKESnsnvnrkcghkqsplfhtPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKtaagvedddcrvITEKKVFQHIREKArnfpistasnnahsassepLILTRKRFYEQRLQLHDeldvpeetegsifpratllnpSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTifehirkksknfpvfnsNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCRTFRKLNLSPIasvagtaepsssIKMLSFDISMMKKQKCSPNTSTRQCCPLPlastgktkevdsfLGFESVFSFL
MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKTAAGVEDDDCRVITEKKVFQHIREKARNFPIstasnnahsassEPLILTRKRFYEQRLQLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCRTFRKLNLSPIASVAGTAEPSSSIKMLSFDISMMKKQKCSPNTSTRQCCPLPLASTGKTKEVDSFLGFESVFSFL
**************SVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTR***************TYGY*************************MQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGD*******IQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKE****************FHT*EEVCVI**************************************************DCRVITEKKVFQHIR***********************ILTRKRFYEQRL******************************************LTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRK**********************************FCIAA*********************************NKVCTKQNHNIVSGSCCRTFRKLNLSPIASV*************************************************SFLGFE******
MLAC*********ASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSN*************************SYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVL**************************************************************LDEDLG***********************************************************************************************************************************************************************************************************************************************************************************************************************LGFESVFSFL
************LASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKTAAGVEDDDCRVITEKKVFQHIREKARNFPISTAS********EPLILTRKRFYEQRLQLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCRTFRKLNLSPIASVAGTAEPSSSIKMLSFDISM************RQCCPLPLASTGKTKEVDSFLGFESVFSFL
MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDE*****KTAAGV*DDDCRVITEKKVFQHIREKARNFPISTA****HSASSEPLILTRKRFYEQRLQLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNIS***ESDSAIQTNEHFPANQSEFCI**SDVT*DANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQN***************NLSPIASVAGTAEPSSSIKMLSFDISMMKKQK*********CC*******GKTKEVDSFLGFESVFSFL
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MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDEDLGEGKTAAGVEDDDCRVITEKKVFQHIREKARNFPISTASNNAHSASSEPLILTRKRFYEQRLQLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLTAAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNFPVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGALDKNANDNKVCTKQNHNIVSGSCCRTFRKLNLSPIASVAGTAEPSSSIKMLSFDISMMKKQKCSPNTSTRQCCPLPLASTGKTKEVDSFLGFESVFSFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1034 2.2.26 [Sep-21-2011]
A2PYH41435 Probable ATP-dependent DN yes no 0.583 0.420 0.371 1e-111
A2RUV51336 Probable ATP-dependent DN yes no 0.604 0.467 0.345 1e-110
P519791187 ATP-dependent DNA helicas yes no 0.554 0.482 0.293 9e-66
Q55CI8 2237 Activating signal cointeg yes no 0.478 0.221 0.296 5e-50
F1NTD6 2211 Activating signal cointeg no no 0.440 0.205 0.299 4e-49
Q54G57 2195 Activating signal cointeg no no 0.350 0.164 0.302 7e-49
Q9U2G0 2145 Putative U5 small nuclear no no 0.437 0.210 0.276 7e-49
Q9VUV9 2142 Putative U5 small nuclear yes no 0.435 0.210 0.295 2e-48
Q9UT24 2176 Pre-mRNA-splicing factor yes no 0.441 0.210 0.285 2e-48
O60072 1935 Putative helicase mug81 O no no 0.503 0.269 0.264 2e-48
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2 SV=2 Back     alignment and function desciption
 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/681 (37%), Positives = 374/681 (54%), Gaps = 78/681 (11%)

Query: 10   SSSLASVRFLAVSATIPNIEDIAEWLN---VPVQGIKRFGEEMRPVKL------------ 54
            +S+   +RF+AVSATIPN EDIAEWL+    P   +K   E  RPVKL            
Sbjct: 445  TSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLK-MDESHRPVKLQKVVLGFPCSSN 503

Query: 55   ----------TTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD 104
                        K+  ++  YS  K  LVFC+TRKG Q+AA  L + A        FI  
Sbjct: 504  QTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDA-------KFIMT 556

Query: 105  REQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTL 164
             EQ++RL++ + S  D +++  +  G  YH+ G+ L DR ++EG F  GD+ VL TT+TL
Sbjct: 557  VEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTL 616

Query: 165  AHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRET 224
            A G+NLPAH VVIKST ++    GL+ E+  + ILQM GRAGRP F+ T T +IMTR  T
Sbjct: 617  AMGVNLPAHLVVIKSTMHY--AGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLST 674

Query: 225  VHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQN 284
               Y  +L   + VES L   + EHL AEIV  T++D+  A+EW++ + LY+R  KNP +
Sbjct: 675  RDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSH 734

Query: 285  YSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDT 344
            Y     +++D IE  +QE+C++ +++LS   +I  DE G   KP E GRLM  YY+ F+T
Sbjct: 735  YGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDE-GVNFKPTEAGRLMAWYYITFET 793

Query: 345  MKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG-RLRFHINGDKG 403
            +K          L D +  +   +E   IQLR NEKK LN +N D +   +RF + G   
Sbjct: 794  VKKFYTISGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEG--- 850

Query: 404  KRKKRIQTREEKIFVLANDCLI----GDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIF 459
                RI+TRE K+     +CLI    G   + D +LTQD   I  +GSRI + + D+   
Sbjct: 851  ----RIKTREMKV-----NCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAA 901

Query: 460  R-KNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADP 518
            + K +   +NS +LAK    +LW++S ++ KQL  IG+  + A+ + G+ SF+ + E D 
Sbjct: 902  QEKKFAVLLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDA 961

Query: 519  RRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTK 578
            R +E++  R  PFG  IKE+++ L PK ++K+E+I       +++L+T+   +     TK
Sbjct: 962  RELELILNRHPPFGTQIKETVMYL-PKYELKVEQITRYSDTTAEILVTVILRNFEQLQTK 1020

Query: 579  R-----HYADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVK------- 626
            R     HY  +I+G  +N +V  H KI            +L +     K+ VK       
Sbjct: 1021 RTASDSHYVTLIIGDADNQVVYLH-KIT--------DSVLLKAGSWAKKIAVKRALKSED 1071

Query: 627  --ADLIFEEYIGVDIHQKLVL 645
               +LI  E++G+DI QKL +
Sbjct: 1072 LSINLISSEFVGLDIQQKLTV 1092

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis GN=hfm1 PE=2 SV=1 Back     alignment and function description
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3 Back     alignment and function description
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 Back     alignment and function description
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2 Back     alignment and function description
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1 Back     alignment and function description
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 Back     alignment and function description
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 Back     alignment and function description
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr2 PE=1 SV=1 Back     alignment and function description
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug81 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1034
359488823 1984 PREDICTED: uncharacterized protein LOC10 0.976 0.509 0.654 0.0
296087631 1270 unnamed protein product [Vitis vinifera] 0.990 0.806 0.646 0.0
255567371 2000 pentatricopeptide repeat-containing prot 0.949 0.491 0.647 0.0
356560587 1195 PREDICTED: probable ATP-dependent DNA he 0.952 0.824 0.619 0.0
449450199 1189 PREDICTED: probable ATP-dependent DNA he 0.740 0.644 0.728 0.0
1453390091133 rock-N-rollers protein [Arabidopsis thal 0.804 0.734 0.644 0.0
2978183701131 rock-N-rollers [Arabidopsis lyrata subsp 0.801 0.732 0.641 0.0
224055533984 predicted protein [Populus trichocarpa] 0.739 0.777 0.692 0.0
92944781111 helicase-like protein [Arabidopsis thali 0.806 0.750 0.594 0.0
208436345 1205 rice meiotic crossover 1 [Oryza sativa J 0.736 0.632 0.614 0.0
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1379 bits (3569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/1071 (65%), Positives = 826/1071 (77%), Gaps = 61/1071 (5%)

Query: 1    MLACNPEMKSSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVF- 59
            MLA NPEMK SSL+ VRFLAVSATIPNIED+AEWL VP QGIKRFGEEMRPVKLTTKVF 
Sbjct: 938  MLARNPEMKLSSLSHVRFLAVSATIPNIEDLAEWLMVPAQGIKRFGEEMRPVKLTTKVFG 997

Query: 60   -------------------DILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNP 100
                               DILMQYSRGKSALVFCSTRKGAQEAAQ++SQ AM YG+SNP
Sbjct: 998  YTPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRISQIAMNYGHSNP 1057

Query: 101  FIKDREQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCT 160
            FI+ +EQ+ERLREASLSCSDKQMQSYILYGVGYHNGGLC KDRNLIEGLFLKGD+Q+LCT
Sbjct: 1058 FIRSKEQEERLREASLSCSDKQMQSYILYGVGYHNGGLCPKDRNLIEGLFLKGDIQILCT 1117

Query: 161  TNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT 220
            TNTLAHGINLPAHTVVIKSTQ+FNKEKGLYME+DRS ILQMCGRAGRPPF DTG  IIMT
Sbjct: 1118 TNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSMILQMCGRAGRPPFEDTGMAIIMT 1177

Query: 221  RRETVHLYENLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKK 280
            RRETVHLYENLLNGCE+VESQLLSCVTEHLTAEIVQ+TVSDI +AIEWMKCSYLYVRMKK
Sbjct: 1178 RRETVHLYENLLNGCELVESQLLSCVTEHLTAEIVQLTVSDIARAIEWMKCSYLYVRMKK 1237

Query: 281  NPQNYSVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYL 340
            NP+ Y+ +K I  + IEK+ Q++CVQKV+ELS HQMIWTDEDGFLLKP EPGRLMTKYYL
Sbjct: 1238 NPEKYAFKKGIPGNLIEKYTQDICVQKVNELSQHQMIWTDEDGFLLKPLEPGRLMTKYYL 1297

Query: 341  KFDTMKYIMQTPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHING 400
            KF TMK+IMQTP+NC LEDALH +C +EEIAWIQLRRNEKK LN IN+DKDG+LRFHI G
Sbjct: 1298 KFGTMKHIMQTPLNCSLEDALHIICRSEEIAWIQLRRNEKKFLNDINMDKDGQLRFHILG 1357

Query: 401  DKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR 460
            DKGKRK+RIQTREEKIFVLANDCL G+PSVHDLSLTQD N+I +NG RIAKCM++YFI++
Sbjct: 1358 DKGKRKRRIQTREEKIFVLANDCLTGNPSVHDLSLTQDANAICSNGCRIAKCMKEYFIYK 1417

Query: 461  KNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRR 520
            K+YKGA+NS LL+K L Q+LWDDSPYLLKQLPGIGMVTAKALHSMGI SFE LAEADPRR
Sbjct: 1418 KSYKGALNSILLSKCLLQKLWDDSPYLLKQLPGIGMVTAKALHSMGIVSFEALAEADPRR 1477

Query: 521  IEIVTGRKYPFGNHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRH 580
            IEIVTGRKYPFGNHIKESL SLPPKV++KIEEI+CQ QGKSK+++ LTRLSQS QS KR+
Sbjct: 1478 IEIVTGRKYPFGNHIKESLSSLPPKVELKIEEIECQRQGKSKIVLILTRLSQSFQSIKRY 1537

Query: 581  YADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLTVKADLIFEEYIGVDIH 640
            YADM+VG EE+N++LFHEKI      SPYS T+L S PQQGKLTVKADLIFEEYIG+D+H
Sbjct: 1538 YADMVVGLEEDNLILFHEKI------SPYSTTILLSTPQQGKLTVKADLIFEEYIGIDLH 1591

Query: 641  QKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQTPAQEIDNLLSSTMEDS 700
            QKL++VKE NSN+    G KQ   F  P+EV VIED+NE A+ + ++ +D    S  E  
Sbjct: 1592 QKLLVVKEINSNMIHARGSKQLSSFPLPKEVYVIEDDNEDASHSSSKGLDISKKSKREMD 1651

Query: 701  SMPSFSLLDEDLGEGKTAAGVEDDDCRVITEKKVFQHIREKARNFPISTASNNAHSASSE 760
            S+P+F L+DE+  EG  A   EDD+C++ITE+ VF+HIR+K+++F + T SN + S SSE
Sbjct: 1652 SLPNFKLIDEESEEGSPAIETEDDECKIITEQTVFEHIRKKSKSFNVLTKSNASVSPSSE 1711

Query: 761  PLILTRKRFYEQRLQLHDELDVPEETEGSIFPRATLLNPSSGSTEAELKEHGFNSSLT-- 818
             LILTRKR +EQ+L+LH   +  EETE S  PR  +++P   S EAEL   G + + T  
Sbjct: 1712 ALILTRKRTHEQQLELH-VTEALEETERSKIPRRAMVSPFLHSREAELNGPGISKNSTTK 1770

Query: 819  ---AAGNLGTINLLDDTGAFSLPKFFMFEDTVPSQYEECTSKTLTKSTIFEHIRKKSKNF 875
               A G+L  +N +DD     LP           +  E TS+ +T++TIF+HIR+K+KNF
Sbjct: 1771 YQPATGSLVVMNFMDDRA--DLP-----------ERTESTSQIVTENTIFDHIRRKAKNF 1817

Query: 876  PVFNSNISKTMESDSAIQTNEHFPANQSEFCIAASDVTKDANSDAVLRDGSTISDMEFGA 935
             VFN   S+T ESDS I T EHF  NQ      + D  +  NS   L+    ISD E   
Sbjct: 1818 LVFNK--SETPESDSTILTKEHFSENQPVLHEDSFDTLEGTNSSEALKTTVVISDSEPKK 1875

Query: 936  LDKNANDNKVCTKQNHNIVSGSCCRTFRKLNLSP-IASVAG--TAEPSSSIKMLSFDIS- 991
            ++K ++  +   K + NI+SGS C T   L+  P ++S+    T  PS  +  +  ++  
Sbjct: 1876 MEKESHHVREGAKMDPNIISGSTCSTHGSLDPLPEVSSIQTDPTHIPSFYVARVKNNVQN 1935

Query: 992  --------MMKKQKCSPNTSTRQCCPLPLASTGKTKEVDSFLGFESVFSFL 1034
                     ++K+  SPN S  QCC  P A+ GK +EVDSFLGF+SVFSFL
Sbjct: 1936 ADPGMCVKNIRKRSLSPNGSKGQCC--PAATPGKIREVDSFLGFKSVFSFL 1984

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087631|emb|CBI34887.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356560587|ref|XP_003548572.1| PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Glycine max] Back     alignment and taxonomy information
>gi|449450199|ref|XP_004142851.1| PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Cucumis sativus] gi|449483903|ref|XP_004156727.1| PREDICTED: probable ATP-dependent DNA helicase HFM1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|145339009|ref|NP_189410.2| rock-N-rollers protein [Arabidopsis thaliana] gi|60172796|gb|AAX14498.1| meiotic recombination protein MER3 [Arabidopsis thaliana] gi|62001777|gb|AAX58606.1| ROCK-N-ROLLERS [Arabidopsis thaliana] gi|332643836|gb|AEE77357.1| rock-N-rollers protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297818370|ref|XP_002877068.1| rock-N-rollers [Arabidopsis lyrata subsp. lyrata] gi|297322906|gb|EFH53327.1| rock-N-rollers [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224055533|ref|XP_002298526.1| predicted protein [Populus trichocarpa] gi|222845784|gb|EEE83331.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|9294478|dbj|BAB02697.1| helicase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|208436345|gb|ACI28521.1| rice meiotic crossover 1 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1034
TAIR|locus:20891441133 RCK "ROCK-N-ROLLERS" [Arabidop 0.705 0.644 0.695 1.50000000019e-315
UNIPROTKB|A2PYH41435 HFM1 "Probable ATP-dependent D 0.642 0.462 0.364 1.2e-105
RGD|1584010954 Hfm1 "HFM1, ATP-dependent DNA 0.616 0.667 0.373 9.4e-105
UNIPROTKB|E2R5U91466 HFM1 "Uncharacterized protein" 0.599 0.422 0.371 1.3e-104
UNIPROTKB|E2RA341437 HFM1 "Uncharacterized protein" 0.599 0.431 0.371 8.8e-104
UNIPROTKB|A6NGI51114 HFM1 "Probable ATP-dependent D 0.642 0.596 0.364 3.6e-103
UNIPROTKB|F1MFR11438 HFM1 "Uncharacterized protein" 0.589 0.424 0.372 1.9e-101
UNIPROTKB|F1S4E91438 HFM1 "Uncharacterized protein" 0.591 0.425 0.365 6.9e-101
ZFIN|ZDB-GENE-061207-431049 hfm1 "HFM1, ATP-dependent DNA 0.590 0.582 0.355 5e-99
UNIPROTKB|G4N3Z71508 MGG_05900 "Uncharacterized pro 0.462 0.316 0.301 3.9e-60
TAIR|locus:2089144 RCK "ROCK-N-ROLLERS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2689 (951.6 bits), Expect = 1.5e-315, Sum P(4) = 1.5e-315
 Identities = 519/746 (69%), Positives = 613/746 (82%)

Query:    53 KLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLR 112
             +L   ++DILMQYS+GKSALVFCSTRKGAQEAAQ+L+QTAMTYGYSNPFIK REQ ERLR
Sbjct:   259 RLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFIKSREQLERLR 318

Query:   113 EASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
             EAS  CSDKQMQSYIL GVGYHNGGLC KDR+L+EGLFL GD+QV+CTTNTLAHGINLPA
Sbjct:   319 EASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPA 378

Query:   173 HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLL 232
             HTVVIKSTQ+FNKEKG YME+DRST+LQM GRAGRPPF+DTG VIIMTRRETVHLYENLL
Sbjct:   379 HTVVIKSTQHFNKEKGHYMEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLL 438

Query:   233 NGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVIS 292
             NGCE+VESQLL C+ EHLTAEIVQ+T+SDIT+AIEWMKCSYLYVRMKKNP+NY+++K I 
Sbjct:   439 NGCEVVESQLLPCLIEHLTAEIVQLTISDITRAIEWMKCSYLYVRMKKNPENYAIKKGIP 498

Query:   293 RDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQTP 352
             +DR+EKH+QE+C+QK++ELS +QMIWTD DGF+LKP+EPGRLMTKYYLKF+TMKYI+ TP
Sbjct:   499 KDRVEKHLQELCLQKINELSQYQMIWTDTDGFVLKPEEPGRLMTKYYLKFETMKYIINTP 558

Query:   353 VNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTR 412
              +  L++ALH VCHAEEI+WIQLRRNEKK LN +N DK+GRLRFHIN +KGKRKKRIQTR
Sbjct:   559 TSYSLDEALHIVCHAEEISWIQLRRNEKKTLNDVNADKEGRLRFHINDNKGKRKKRIQTR 618

Query:   413 EEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALL 472
             EEK+FVLAND L GDPSVHDLS+TQD NSI +NGSRIA+CM++YFI++KNYKG ++S LL
Sbjct:   619 EEKLFVLANDWLTGDPSVHDLSMTQDANSICSNGSRIARCMKEYFIYKKNYKGTLSSTLL 678

Query:   473 AKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFG 532
             AKSLYQ+LWDDSPYLLKQLPGIGMVTAKALHSMG++SFE LAEADPRRIEIVTGRKYPFG
Sbjct:   679 AKSLYQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEALAEADPRRIEIVTGRKYPFG 738

Query:   533 NHIKESLLSLPPKVDMKIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHYADMIVGAEENN 592
             N IKESL SLPPKV++K+EE+ CQ QG SKL +TL+R+SQ +QSTKRHYAD+IVG+EE N
Sbjct:   739 NTIKESLSSLPPKVEIKVEEVDCQKQGISKLAVTLSRVSQPLQSTKRHYADLIVGSEEEN 798

Query:   593 MVLFHEKIRVDEFSSPYSVTVLSSNP-QQGKLTVKADLIFEEYIGVDIHQKLVLVKESNS 651
             ++ FHEKIR+++FSSPYSVTVL   P QQ K+TVKADLIFEEYIG+D+H+ L+L K +N+
Sbjct:   799 LIHFHEKIRMEDFSSPYSVTVLLERPHQQTKVTVKADLIFEEYIGIDLHETLLLKKANNN 858

Query:   652 NVNRKCGHKQSPLFHTP-EEVCVIEDENETAAQTPAQEIDNLLSSTMEDSSMPSFSLLDE 710
              VN K  ++  P ++ P    C+ +D+N   +  P+   D       +D  MPSF L+D+
Sbjct:   859 KVNYKSENRM-PQYYPPMASACIADDDNPVTSG-PSNRKDK------KDD-MPSFKLIDD 909

Query:   711 DLGEGKTA-AGVEDDDCRVITEKKVFQHIREKARNFPIXXXXXXXXXXXXEPLILTRKRF 769
             D  E K     +E+DDC +I E  VF HIREKA+ FP                IL RK  
Sbjct:   910 DSEEEKEPYVTMEEDDCVIINEHTVFDHIREKAKCFPSLNPLNPTSSPASGKSILKRKSL 969

Query:   770 YEQRLQLHDELDVPEETEGSIFPRAT 795
              E       ELD P     S+F   T
Sbjct:   970 VENN---SPELD-PLFQYDSVFDLPT 991
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0003678 "DNA helicase activity" evidence=ISS
GO:0007131 "reciprocal meiotic recombination" evidence=RCA;IMP
GO:0051026 "chiasma assembly" evidence=IMP
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006302 "double-strand break repair" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
UNIPROTKB|A2PYH4 HFM1 "Probable ATP-dependent DNA helicase HFM1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1584010 Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R5U9 HFM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RA34 HFM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6NGI5 HFM1 "Probable ATP-dependent DNA helicase HFM1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFR1 HFM1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4E9 HFM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061207-43 hfm1 "HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G4N3Z7 MGG_05900 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020695001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1127 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00027302001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (799 aa)
      • 0.482
GSVIVG00015236001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (850 aa)
      • 0.458
GSVIVG00002817001
SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (648 aa)
      • 0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1034
COG1204766 COG1204, COG1204, Superfamily II helicase [General 4e-54
pfam02889309 pfam02889, Sec63, Sec63 Brl domain 1e-52
smart00973314 smart00973, Sec63, Sec63 Brl domain 4e-45
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 2e-24
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 4e-24
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 2e-20
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 5e-17
smart00611312 smart00611, SEC63, Domain of unknown function in S 3e-16
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 4e-14
smart0049082 smart00490, HELICc, helicase superfamily c-termina 1e-10
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 3e-10
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-07
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 7e-05
COG0514590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 7e-04
COG1205851 COG1205, COG1205, Distinct helicase family with a 0.001
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information 
 Score =  202 bits (516), Expect = 4e-54
 Identities = 128/561 (22%), Positives = 224/561 (39%), Gaps = 72/561 (12%)

Query: 14  ASVRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKLTTKVF------------- 59
             +R + +SAT+PN E++A+WLN   V+   R     R V                    
Sbjct: 179 ELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLI 238

Query: 60  -----DILMQY-SRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQERLRE 113
                +++++  + G   LVF  +RK A++ A++L          +  I   E    +  
Sbjct: 239 DNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILI 298

Query: 114 ASLSCS-DKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPA 172
                S D+++   +L GV +H+ GL  +DR L+E  F KG ++VL +T TLA G+NLPA
Sbjct: 299 PETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPA 358

Query: 173 HTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRR--ETVHLYEN 230
            TV+IK T+ ++ + G  ++     +LQM GRAGRP ++D G  II+     E  +L E 
Sbjct: 359 RTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAEL 417

Query: 231 LLNG-CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRK 289
            +    E +ES+L       L      + V  +  A+ W++ +  Y R   NPQ Y    
Sbjct: 418 YIQSEPEPIESKLGDE----LNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM 473

Query: 290 VISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIM 349
           +  R+ I        ++ ++E      +  D D   L   E G+L+++ Y+  ++ K   
Sbjct: 474 L--REEILA-----SLRYLEE----NGLILDADWEALHATELGKLVSRLYIDPESAKIFR 522

Query: 350 QTPVNCGLE----DALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDG----RLRFHINGD 401
                  LE      L+ +    ++  I+LR  E   L +  +++        R      
Sbjct: 523 DLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAV 582

Query: 402 KGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRK 461
           +     +      ++    N                D + I               I   
Sbjct: 583 EYNLLLQALKTAARLLDWIN--------------EADEDEILNAYGVA--PGDLLRIAET 626

Query: 462 NYKGAVNSALLAKSLYQRLW--DDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPR 519
               + +   L K+  +         ++L++L  + +         G++S E L   + R
Sbjct: 627 AEWLSADLLALGKAAERLAKILGLGLHVLRKLEILSLRIE-----YGVRSEELLELVEIR 681

Query: 520 RIEIVTGRK-YPFGNHIKESL 539
            +  V  RK Y  G    E L
Sbjct: 682 GVGRVRARKLYNAGYKSLEDL 702

Length = 766
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1034
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
smart00611312 SEC63 Domain of unknown function in Sec63p, Brr2p 100.0
PF02889314 Sec63: Sec63 Brl domain; InterPro: IPR004179 This 100.0
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
KOG4434520 consensus Molecular chaperone SEC63, endoplasmic r 100.0
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 100.0
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.95
COG1202830 Superfamily II helicase, archaea-specific [General 99.95
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.95
PRK13767876 ATP-dependent helicase; Provisional 99.91
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.91
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.89
COG45811041 Superfamily II RNA helicase [DNA replication, reco 99.88
COG1201814 Lhr Lhr-like helicases [General function predictio 99.86
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.86
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.86
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.86
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.85
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.85
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.85
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.85
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.84
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.84
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.84
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.84
PTZ00424401 helicase 45; Provisional 99.83
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.83
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.83
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.83
PTZ00110545 helicase; Provisional 99.83
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.83
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.82
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.82
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.82
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.81
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.81
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.81
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.81
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 99.81
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.8
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.8
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.79
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.78
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 99.77
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.76
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.74
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.74
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.74
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.73
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.72
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.72
PHA02653675 RNA helicase NPH-II; Provisional 99.72
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.7
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.68
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.66
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 99.66
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.66
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.65
PRK106891147 transcription-repair coupling factor; Provisional 99.65
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.65
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.64
KOG0327397 consensus Translation initiation factor 4F, helica 99.64
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.64
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.64
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.63
KOG4284980 consensus DEAD box protein [Transcription] 99.63
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.6
KOG0347731 consensus RNA helicase [RNA processing and modific 99.6
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.55
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.53
KOG0334997 consensus RNA helicase [RNA processing and modific 99.51
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.48
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.47
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.46
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.43
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.43
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.42
COG1205851 Distinct helicase family with a unique C-terminal 99.41
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.41
PRK05298652 excinuclease ABC subunit B; Provisional 99.39
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.38
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.38
KOG0346569 consensus RNA helicase [RNA processing and modific 99.38
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 99.37
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.36
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.35
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.34
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.34
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.34
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.33
PRK04914956 ATP-dependent helicase HepA; Validated 99.31
PHA02558501 uvsW UvsW helicase; Provisional 99.3
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.25
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.24
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.21
KOG0354746 consensus DEAD-box like helicase [General function 99.2
PRK09694878 helicase Cas3; Provisional 99.19
smart0049082 HELICc helicase superfamily c-terminal domain. 99.17
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.17
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.11
PRK13766773 Hef nuclease; Provisional 99.11
PRK05580679 primosome assembly protein PriA; Validated 99.11
PRK14701 1638 reverse gyrase; Provisional 99.06
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.01
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 98.94
PRK094011176 reverse gyrase; Reviewed 98.93
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.85
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 98.83
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 98.83
PRK12904830 preprotein translocase subunit SecA; Reviewed 98.82
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 98.81
PRK13107908 preprotein translocase subunit SecA; Reviewed 98.8
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 98.7
TIGR010541171 rgy reverse gyrase. Generally, these gyrases are e 98.66
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.59
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 98.32
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 98.28
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 98.15
PLN031421033 Probable chromatin-remodeling complex ATPase chain 98.06
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 97.86
PRK12326764 preprotein translocase subunit SecA; Reviewed 97.77
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 97.65
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 97.47
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 97.24
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 97.23
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 97.14
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 96.81
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 96.79
COG1198730 PriA Primosomal protein N' (replication factor Y) 96.69
CHL00122870 secA preprotein translocase subunit SecA; Validate 96.69
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 96.56
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 96.52
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 96.5
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.41
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 96.21
COG4096875 HsdR Type I site-specific restriction-modification 96.06
COG11101187 Reverse gyrase [DNA replication, recombination, an 95.94
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 95.76
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 94.93
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 94.69
KOG1123776 consensus RNA polymerase II transcription initiati 94.61
KOG03911958 consensus SNF2 family DNA-dependent ATPase [Genera 94.44
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 93.92
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 93.67
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 93.34
PRK12766232 50S ribosomal protein L32e; Provisional 92.51
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 92.24
KOG03841373 consensus Chromodomain-helicase DNA-binding protei 91.99
smart00492141 HELICc3 helicase superfamily c-terminal domain. 91.55
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 90.83
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 90.6
KOG09211282 consensus Dosage compensation complex, subunit MLE 90.18
PF1173193 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd 90.18
TIGR00595505 priA primosomal protein N'. All proteins in this f 89.85
PRK04301317 radA DNA repair and recombination protein RadA; Va 89.74
PRK14873665 primosome assembly protein PriA; Provisional 89.6
TIGR02236310 recomb_radA DNA repair and recombination protein R 89.39
PRK05580679 primosome assembly protein PriA; Validated 89.2
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 88.73
TIGR00643630 recG ATP-dependent DNA helicase RecG. 88.69
COG4889 1518 Predicted helicase [General function prediction on 87.35
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 87.29
PF02399824 Herpes_ori_bp: Origin of replication binding prote 86.6
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 86.45
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 85.83
smart00491142 HELICc2 helicase superfamily c-terminal domain. 85.17
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 84.74
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 84.54
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 82.62
PRK106891147 transcription-repair coupling factor; Provisional 82.1
COG1198730 PriA Primosomal protein N' (replication factor Y) 81.41
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 81.16
PF13871278 Helicase_C_4: Helicase_C-like 80.55
PF1039152 DNA_pol_lambd_f: Fingers domain of DNA polymerase 80.39
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=4e-92  Score=836.76  Aligned_cols=641  Identities=26%  Similarity=0.382  Sum_probs=574.2

Q ss_pred             hcCCCCCcEEEEccCccCHHHHHHHhCCCCCcEEeccccceecchHHHH-------------------HHHHHhhcCCCc
Q 001668           10 SSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKV-------------------FDILMQYSRGKS   70 (1034)
Q Consensus        10 ~~~~~~~riI~lSATlpn~~dla~wL~~~~~~i~~f~~~~Rpv~L~~~v-------------------~~~l~~~~~~~~   70 (1034)
                      +......|+||||||+||+.|+|.||++++.++|.|+.+||||||.+++                   |+.+.++...+|
T Consensus       469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~q  548 (1674)
T KOG0951|consen  469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQ  548 (1674)
T ss_pred             hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCc
Confidence            3446689999999999999999999999999999999999999998765                   566667777799


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHhhcCCCCCCcCcH-HHHHHHHHhhhccChhhhhhhhhcceEEccCCCCHHHHHHHHHH
Q 001668           71 ALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDR-EQQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGL  149 (1034)
Q Consensus        71 ~LVFv~sRk~~e~lA~~L~~~~~~~g~~~~~~~~~-~~~~~l~~~~~~~~d~~L~~~l~~GV~~hH~gLs~~dR~~ve~~  149 (1034)
                      +||||++|+++.++|+.|+..+.+......|.... ...+.++.+..+..|..|+++|.+|+|+|||||++.+|..+|++
T Consensus       549 VLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdL  628 (1674)
T KOG0951|consen  549 VLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDL  628 (1674)
T ss_pred             EEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHH
Confidence            99999999999999999998877766655665433 45677888888899999999999999999999999999999999


Q ss_pred             hhcCCcceEEeccccccccCCCCeEEEEeccccccCCCCccccCCHHHHHHhccccCCCCCCCccEEEEEeccccHHHHH
Q 001668          150 FLKGDVQVLCTTNTLAHGINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYE  229 (1034)
Q Consensus       150 F~~G~ikVLVaT~tLa~GVNLPav~vVI~~t~~y~~~~~~~~p~s~~~ylQmiGRAGR~g~d~~G~aiil~~~~~~~~y~  229 (1034)
                      |++|.++|||||.|||||||+|+++|||+||+.|++++|+|.++++.+.+||.||||||++|+.|.++|++...+.++|.
T Consensus       629 f~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyl  708 (1674)
T KOG0951|consen  629 FADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYL  708 (1674)
T ss_pred             HhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcccccchhhhhhhhhhHHHHHhcccCCHHHHHHHHHHhhhHhhhhcCCCcccccccCChhHHHHHHHHHHHHHHH
Q 001668          230 NLLNGCEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRKVISRDRIEKHMQEVCVQKVD  309 (1034)
Q Consensus       230 ~ll~~~~pieS~L~~~L~d~l~aEI~~g~i~~~~~aidwl~~Tfly~rl~~nP~~Y~l~~~~s~~~l~~~l~~l~~~~l~  309 (1034)
                      .+++++.||||++.+.|.|.+||||+.| +++..++++|+.+||||.||.+||..|++...-+...++....+++++++.
T Consensus       709 s~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~  787 (1674)
T KOG0951|consen  709 SLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAAT  787 (1674)
T ss_pred             HhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHh
Confidence            9999999999999999999999999999 999999999999999999999999999987655544466677799999999


Q ss_pred             HHHHCCCcEEcCCCCccccCCCcccccccccchhhHHHHHh-CCCCCChHHHHHHhhccccccccccChhHHHHHhHhhh
Q 001668          310 ELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMKYIMQ-TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINI  388 (1034)
Q Consensus       310 ~L~~~~~I~~d~~~~~l~~t~lG~i~s~yyI~~~T~~~f~~-~~~~~s~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~  388 (1034)
                      .|.++++|.+|...+.+++|++|+|+|+|||.+.+|..|.+ +.+.++..+++++++.+.||+.+.+|.+|+.+|+.|..
T Consensus       788 ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~  867 (1674)
T KOG0951|consen  788 LLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLE  867 (1674)
T ss_pred             hHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcc
Confidence            99999999999888889999999999999999999999997 78899999999999999999999999999999999874


Q ss_pred             ccCCcceeeecCCccccccccchhHHHHHHHHHHHhcCCCCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHhcchHHHHH
Q 001668          389 DKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVN  468 (1034)
Q Consensus       389 ~~~~~l~~~i~~~~~~~~~~~~~~~~Ka~vLLqAhl~r~~~~~d~sL~~D~~~Il~~a~rLl~am~eIa~~~~~~~~~l~  468 (1034)
                          ..|+|+       ++.+..|..|+++|||+|+++. .+.+++|..||.+|.++|.|+.||+++|++.++|...+.-
T Consensus       868 ----~vpIpi-------re~l~~p~akinvllq~yiS~l-k~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~  935 (1674)
T KOG0951|consen  868 ----RVPIPI-------RENLDEPSAKINVLLQSYISQL-KLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQM  935 (1674)
T ss_pred             ----cCCcCc-------hhccccchHHHHHHHHHHHhhc-ccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHH
Confidence                567776       3466789999999999999886 6788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCcccccccCCCCHHHHHHHHhCCCCCHHHHhhCChHHHHHhhCCCCchhHHHHHHHhcCCCeeEE
Q 001668          469 SALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAEADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDM  548 (1034)
Q Consensus       469 ~l~L~q~L~QalW~~~~~~LlQLP~I~~~~ak~L~~~gi~Sl~~L~~~~~~~le~Ll~~~~~~g~~I~~~~~~lP~~l~v  548 (1034)
                      ++.+|+|+.+++|+...| |+|+|+++.++++.++++.+ .++.+.++++.++..+. ..|++|+.+..++++|| ++.+
T Consensus       936 ~l~~ck~v~~r~w~~~~p-lrqf~~~~~ev~~~lE~k~~-~~~r~~~l~~~elg~lI-~~~k~G~~l~~~~~~fp-k~s~ 1011 (1674)
T KOG0951|consen  936 ALNLCKMVEKRMWPTQTP-LRQFKGCPKEVLRRLEKKEL-PWGRYYDLDPAELGELI-GVPKMGKPLHLFIRQFP-KLSV 1011 (1674)
T ss_pred             HHHhHhHhhhhcccccCc-hhhcCCCCHHHHHHHHhccC-cchhhhccCHHHHHHHh-cCcccChhHHHHHHhcc-ccee
Confidence            999999999999999888 99999999999999997766 57888888889988888 47899999999999999 7887


Q ss_pred             EEEEEEeecCCeEEEEEEEEEecCCcccCcccc----ceEEEEecCCCeEEEeeeeeeeccCcceEEEEEeeCCCCceEE
Q 001668          549 KIEEIKCQGQGKSKLLITLTRLSQSVQSTKRHY----ADMIVGAEENNMVLFHEKIRVDEFSSPYSVTVLSSNPQQGKLT  624 (1034)
Q Consensus       549 ~~ke~~v~~~~~~~l~Vkl~r~~p~~~~~k~~~----~wv~V~D~k~n~Il~~~ri~~~~~~~~~~v~l~f~aP~~G~~~  624 (1034)
                      ..   .++|.....++|.|++.+.+.|..+.|.    .|++|+|.++.+|++++-+-+.+  ..+++.+..+.- .+.-.
T Consensus      1012 ~~---~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k--~~~~v~ft~~~~-~~pP~ 1085 (1674)
T KOG0951|consen 1012 SA---HVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKK--KEHTVNFTVPLF-EPPPQ 1085 (1674)
T ss_pred             ee---eeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEecc--CceEEEEEeecC-CCCCc
Confidence            44   3778888899999999998888776663    29999999999999988776653  244444322221 12346


Q ss_pred             EEEEEEeCceeeccceEEEEEEeecCcccccccCcCCCCCCCCCcccccccCCcccccCC
Q 001668          625 VKADLIFEEYIGVDIHQKLVLVKESNSNVNRKCGHKQSPLFHTPEEVCVIEDENETAAQT  684 (1034)
Q Consensus       625 ~~v~liSDsYvG~D~~~~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~i~~~~e~~~~~  684 (1034)
                      |++.++||.|+|...  .+++.         ++++.+|.|+|||+++.|.+.....+...
T Consensus      1086 ~fi~lvSd~wl~s~~--~~Pvs---------fr~l~lpek~p~pt~lld~~~~~~~~l~N 1134 (1674)
T KOG0951|consen 1086 YFIRLVSDRWLHSET--VLPVS---------FRHLILPEKYPPPTELLDLQPLPVSALRN 1134 (1674)
T ss_pred             eEEEEeeccccCCCc--ccccc---------hhhccCcccCCCCchhhhccccchhccCC
Confidence            899999999999999  88888         99999999999999999888776554443

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK12766 50S ribosomal protein L32e; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1034
4f91_B 1724 Brr2 Helicase Region Length = 1724 2e-46
4f92_B 1724 Brr2 Helicase Region S1087l Length = 1724 6e-46
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 2e-21
2va8_A715 Dna Repair Helicase Hel308 Length = 715 5e-20
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 4e-18
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 1e-11
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 2e-10
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 2e-10
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure 
Iteration: 1

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/501 (28%), Positives = 236/501 (47%), Gaps = 58/501 (11%)
Query: 16  VRFLAVSATIPNIEDIAEWLNV-PVQGIKRFGEEMRPVKL-------TTK---------- 57
           VR + +SAT+PN ED+A +L V P +G+  F    RPV L       T K          
Sbjct: 245 VRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMN 304
Query: 58  --VFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKD-REQQERLREA 114
             V++ +M+++     LVF  +RK   + A+ +    +       F+++     E LR  
Sbjct: 305 EIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTE 364
Query: 115 SLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGINLPAHT 174
           +  C + +++  + YG   H+ G+   DR L+E LF    +QVL +T TLA G+NLPAHT
Sbjct: 365 AEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHT 424
Query: 175 VVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVHLYENLLNG 234
           V+IK TQ ++ EKG + E     ILQM GRAGRP ++  G  I++T    +  Y +LLN 
Sbjct: 425 VIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ 484
Query: 235 CEMVESQLLSCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNYSVRK----- 289
              +ESQ++S + + L AEIV   V +   A+ W+  +YLY+RM ++P  Y +       
Sbjct: 485 QLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKG 544
Query: 290 --VISRDRIE-KHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTMK 346
             ++ + R++  H   + + K      + ++  D+     +  E GR+ + YY+  DT++
Sbjct: 545 DPLLDQRRLDLVHTAALMLDK------NNLVKYDKKTGNFQVTELGRIASHYYITNDTVQ 598
Query: 347 YIMQ--TPVNCGLEDALHTVCHAEEIAWIQLRRNEK----KLLNVINIDKDGRLRFHING 400
              Q   P    +E        + E   I +R  EK    KLL  + I            
Sbjct: 599 TYNQLLKPTLSEIE-LFRVFSLSSEFKNITVREEEKLELQKLLERVPI------------ 645
Query: 401 DKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRDYFIFR 460
                K+ I+    KI VL     I    +   +L  DM  ++ +  R+ + + +  + R
Sbjct: 646 ---PVKESIEEPSAKINVLLQ-AFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNR 701
Query: 461 KNYKGAVNSALLAKSLYQRLW 481
              +    +  L K + +R+W
Sbjct: 702 GWAQLTDKTLNLCKMIDKRMW 722
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1034
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 1e-125
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 1e-121
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 1e-112
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 9e-41
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 6e-37
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 1e-20
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 1e-19
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 1e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 2e-07
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 1e-04
1vq8_Y241 50S ribosomal protein L32E; ribosome 50S, protein- 9e-04
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
 Score =  397 bits (1022), Expect = e-125
 Identities = 118/577 (20%), Positives = 221/577 (38%), Gaps = 67/577 (11%)

Query: 10  SSSLASVRFLAVSATIPNIEDIAEWLNVPVQGIKRFGEEMRPVKLTTKVFD--------- 60
           +  L   + + +SATI N E++AEWLN  +        + RPVKL   VF          
Sbjct: 164 AHMLGKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDG 218

Query: 61  -----------ILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDREQQE 109
                      +     + K AL+F + R+ A+  A +LS+   +          R   E
Sbjct: 219 SIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEI---RALNE 275

Query: 110 RLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAHGIN 169
                  + +++++   I  GV +H+ GL   +R L+E  F KG ++ +  T TL+ GIN
Sbjct: 276 LADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGIN 335

Query: 170 LPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMTRRETVH--L 227
            PA  V+I+    ++             + QM GRAGRP +++ G  II++  +     +
Sbjct: 336 TPAFRVIIRDIWRYSDFG--MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVM 393

Query: 228 YENLLNGCEMVESQLL--SCVTEHLTAEIVQMTVSDITQAIEWMKCSYLYVRMKKNPQNY 285
              +    E + SQL   S +   + A I     S + + ++++  ++   +       Y
Sbjct: 394 NHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQ---RKDTY 450

Query: 286 SVRKVISRDRIEKHMQEVCVQKVDELSCHQMIWTDEDGFLLKPQEPGRLMTKYYLKFDTM 345
           S+ + I                +  L  ++ I    +   ++P   G    K Y+   T 
Sbjct: 451 SLEEKIRN-------------ILYFLLENEFIEISLE-DKIRPLSLGIRTAKLYIDPYTA 496

Query: 346 KYIMQ----TPVNCGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRF---HI 398
           K           +       H +    +I      + E + L     +   RL F   +I
Sbjct: 497 KMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYI 556

Query: 399 NGDKGKRKKRIQTREEKIFVL---ANDCLIGDPSVHDLSLTQDMNSISTNGSRIAKCMRD 455
           +G     +++     +   VL    N+   G+          D+  I      +   +++
Sbjct: 557 SGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKE 616

Query: 456 YFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLAE 515
                  Y+       L   +   + ++    L QLP +G   A+AL++ G +S E +++
Sbjct: 617 IAKVLGAYEIVDYLETLRVRVKYGIREE-LIPLMQLPLVGRRRARALYNSGFRSIEDISQ 675

Query: 516 ADPRRIEIVTGRKYPFGNHIKESLLSLPPKVDMKIEE 552
           A P  +  + G     G    E++       ++KI E
Sbjct: 676 ARPEELLKIEG----IGVKTVEAIFKF-LGKNVKISE 707
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 Back     alignment and structure
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1034
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 1e-26
d2q0zx1176 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo 2e-22
d2p6ra185 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu 5e-11
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 1e-08
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 1e-06
d1pzna161 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-ter 3e-05
d2p6ra2198 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglob 1e-04
d2i1qa160 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-term 2e-04
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 2e-04
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 3e-04
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  106 bits (264), Expect = 1e-26
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 47  EEMRPVKLTTKVFDILMQYSRGKSALVFCSTRKGAQEAAQQLSQTAMTYGYSNPFIKDRE 106
              R VK    V + +   +     LVF STR+GA++ A +LS           ++++  
Sbjct: 22  STSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAK------YVENEG 72

Query: 107 QQERLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRNLIEGLFLKGDVQVLCTTNTLAH 166
            ++ + E +     +++   +  G  +H+ GL    R ++E  F +G+++V+  T TLA 
Sbjct: 73  LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAA 132

Query: 167 GINLPAHTVVIKSTQYFNKEKGLYMEHDRSTILQMCGRAGRPPFNDTGTVIIMT-RRETV 225
           G+NLPA  V+++S   F+   G       S   QM GRAGRP  ++ G  II+  +R+  
Sbjct: 133 GVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 189

Query: 226 HLYENLLNG 234
              +  + G
Sbjct: 190 IAVKRYIFG 198
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 61 Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 198 Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 60 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1034
d2q0zx1176 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 100.0
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.97
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.83
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.81
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.8
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.8
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.78
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.77
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.77
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.77
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.76
d2q0zx2114 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 99.69
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.61
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.6
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.5
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.48
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.46
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.41
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.4
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.32
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.31
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.15
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.92
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.81
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.65
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.11
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 96.51
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 95.46
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 95.41
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 94.85
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 93.49
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 93.09
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 92.97
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 90.19
d1b22a_70 DNA repair protein Rad51, N-terminal domain {Human 90.16
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 86.15
d1jx4a2240 DinB homolog (DBH) {Archaeon Sulfolobus solfataric 84.83
d1zeta2273 DNA polymerase iota {Human (Homo sapiens) [TaxId: 84.25
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 83.87
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 80.3
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Sec63 N-terminal domain
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-32  Score=234.70  Aligned_cols=176  Identities=18%  Similarity=0.228  Sum_probs=162.5

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99677998862123336432472379998674211477411410588432122200158999999988842999989852
Q 001668          355 CGLEDALHTVCHAEEIAWIQLRRNEKKLLNVINIDKDGRLRFHINGDKGKRKKRIQTREEKIFVLANDCLIGDPSVHDLS  434 (1034)
Q Consensus       355 ~t~~~iL~iLs~S~EF~~i~lR~~Ek~~L~~L~~~~~~~l~~~~~g~~~k~~~~~~~~~~Ka~iLLqAhl~R~~~l~d~s  434 (1034)
                      +.++++|++||.|.||.++++|++|+.++++|..    .++++..+      ..++.++.|+++|||||++|.+ ++ .+
T Consensus         1 t~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~----~~~~~~~~------~~~~~~~~K~~~Llqa~l~r~~-l~-~s   68 (176)
T d2q0zx1           1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQ----KVPHKLNN------PKFNDPHVKTNLLLQAHLSRMQ-LS-AE   68 (176)
T ss_dssp             CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHH----HSSSCCSS------CCTTCHHHHHHHHHHHHHTTCC-CC-HH
T ss_pred             CCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHH----HCCCCCCC------CCCCCHHHHHHHHHHHHHCCCC-CC-HH
T ss_conf             9588999998186866228878458999999998----68987766------6657778999999999984898-98-89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf             36589999997699999999999971465999999999999984317899622334688999999999968999988885
Q 001668          435 LTQDMNSISTNGSRIAKCMRDYFIFRKNYKGAVNSALLAKSLYQRLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFETLA  514 (1034)
Q Consensus       435 L~~D~~~Il~~a~rLl~al~eIa~~~~~~~~~l~~l~Lsq~IvQalW~~~~p~LlQLPhi~~~~vk~L~~~gi~Sl~~L~  514 (1034)
                      |..|+.+|+++++||++||++|+..++|+.+++++++|+|||+||+|++.+| |+||||++++.++++.++|++|+++|.
T Consensus        69 l~~D~~~I~~~~~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~-L~Qlp~~~~~~~~kl~~~~i~sl~~l~  147 (176)
T d2q0zx1          69 LQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSY-LKQLPHFTSEHIKRCTDKGVESVFDIM  147 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCG-GGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf             9999999999899999999999987787899999999999999864999997-439786999999999877999899998


Q ss_pred             HCCHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf             07947797740799822679999983199
Q 001668          515 EADPRRIEIVTGRKYPFGNHIKESLLSLP  543 (1034)
Q Consensus       515 ~~d~~e~e~Ll~~~~~~g~~I~~~i~~lP  543 (1034)
                      ++++++++.+++.+++++++|.++++.||
T Consensus       148 ~~~~~e~~~ll~~~~~~~~~i~~~~~~~P  176 (176)
T d2q0zx1         148 EMEDEERNALLQLTDSQIADVARFCNRYP  176 (176)
T ss_dssp             HSCHHHHHHHHCCCHHHHHHHHHHHTTSC
T ss_pred             HCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             59999999997699999999999997582
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Back     information, alignment and structure
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure