Citrus Sinensis ID: 001681

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030-
MKRSRDEVYMNSQIKRPMISSRGEPSGQTQVVGGGGGGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNSILRDRSSAMPTARQVHVDKKERAMASHADRDLSVDRPDPDHDRVLLKSDKDQRRRGEKERERRDDHRRERERDDRDFENDVNRDFSMQRFPHKRKSARKIEDSTAEPLHQGGEGDENFGMHPVSSSYDDKNAMKSMFSQELSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVMSKKSLWNEGRIPKSVKVEDRDRDRDRERDDGVKDRDREAREKDRLDKSVAFVNKDVGPKMSMYSSKDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAEIKEISEKKRKEDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKSHTVKSRAASVGDSDGSPDGDAAAMTSKHSNPSRNGDESIPPEQSSSSRAWLPNGDHGIKEDVSVEADHNARKSDNFCDSSEQDKVQNNAAMADETSGISKQASTNERLIGTNAAIAAAADQSNGRSNIENTSGLSVAHSRPGNHIVEGGLELRSSNEILPSSEGGECSRQNISTNGVMTEGAKILRYNAESVKQFKIEREEGELSPNGDFEEDNFAVYGESGLEAVHKAKDWCC
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHcHccccccccEEEcccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHcccccHcccccccHccccHHHHHccccccccHHHHHHccHHHccccHHHHHHHHHcccccccccccccccccHccccHHHccHHHHHHccccHHcccccccccccccccHHHHHHHccccccccccccccccEEcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccHHcccccccccccHHcccEccccccccccccccccc
mkrsrdevymnsqikrpmissrgepsgqtqvvgggggggaqklTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGfntflpkgyeitlpledeqpppkkpvefEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEfthflpdssgaasihyvpsgrnsilrdrssamptarqvhvdkkeramashadrdlsvdrpdpdhdrvllksdkdqrrrgekererrddhrrererddrdfendvnrdfsmqrfphkrksarkiedstaeplhqggegdenfgmhpvsssyddknamKSMFSQELSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLlgrypdlmdgfNGFLARCEKSEELLADVMSKkslwnegripksvkvedrdrdrdrerddgvkdrdreAREKDRLDKSVAFvnkdvgpkmsmysskdkylakpiqeldlsncerctpsyrllpknylipsasqRTELGAEVLNDHWvsvtsgsedysfkhmrknqyeeslfrceDDRFELDMLLESVNVTTKRVEELLEKINnntiktdgpirvedHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKnyhksldhrsfyfkqqdsksLGAKALSAEIKEISEKKRKEDDVLLAIAAgnrrsivphlefeysdpdiHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFlepmlgvpsrpqgaedtEDVVKAKSHTVKsraasvgdsdgspdgdaaamtskhsnpsrngdesippeqssssrawlpngdhgikedvsveadhnarksdnfcdsseqdkvqnnaamadetsgiskqastnerliGTNAAIAAAadqsngrsnientsglsvahsrpgnhivegglelrssneilpsseggecsrqnistngvmtEGAKILRYNAESVKQFKIereegelspngdfeednfavygeSGLEAVHKAKDWCC
mkrsrdevymnsqikrpmissrgepsGQTQVVGGGGGGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIktrfqgddhVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNsilrdrssamptarqvhvdkkeramashadrdlsvdrpdpdhdrvllksdkdqrrrgekererrddhrrererddrdfendvnrdfsmqrfphkrksarkiedstaeplhqggegdenfgmHPVSSSYDDKNAMKSMFSQELSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVmskkslwnegripksvkvedrdrdrdrerddgvkdrdrearekdrldksvafvnkdvgpkmsmysskDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTsgsedysfkhMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKinnntiktdgpirvEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAEIKeisekkrkeddVLLAIaagnrrsivphLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKshtvksraasvgdsdgspDGDAAAMTskhsnpsrngdesippeqssssrawlpngdHGIKEDVSVEADHNarksdnfcdsseQDKVQNNAAMADETSGISKQASTNERLIGTNAAIAAaadqsngrsNIENTSGLSVAHSRPGNHIVEGGLELRSSNEILpsseggecsrqnistngvmtegAKILRYNAESVKQFKIEreegelspngdfEEDNFAVYGESGLEAVHKAKDWCC
MKRSRDEVYMNSQIKRPMISSRGEPSGQTQVVgggggggAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNSILRDRSSAMPTARQVHVDKKERAMASHADRDLSVDRPDPDHDRVLLKSdkdqrrrgekererrddhrrererddrdfendvnrdFSMQRFPHKRKSARKIEDSTAEPLHQGGEGDENFGMHPVSSSYDDKNAMKSMFSQELSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVMSKKSLWNEGRIPKSvkvedrdrdrdrerddgvkdrdrearekdrldkSVAFVNKDVGPKMSMYSSKDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAeikeisekkrkeDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKSHTVKSRaasvgdsdgspdgdaaaMTSKHSNPSRNGDESIPPEQSSSSRAWLPNGDHGIKEDVSVEADHNARKSDNFCDSSEQDKVQNNAAMADETSGISKQASTNERLIGTNaaiaaaaDQSNGRSNIENTSGLSVAHSRPGNHIVEGGLELRSSNEILPSSEGGECSRQNISTNGVMTEGAKILRYNAESVKQFKIEREEGELSPNGDFEEDNFAVYGESGLEAVHKAKDWCC
**********************************************DALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPL************FEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPD*****SIHY***************************************************************************************************************************************************LSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVM********************************************************************YLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFK***************************DVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLG*********************************************************************************************************************************************************************************************************KILRYN**************************FAVYGE**L***********
***********************************************ALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAI******************SFLDIL*****************EALFQDHPDLLEEFTHFLP***************************************************************************************************************************************************************FCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEE*************************************************************************KYLAKPIQELDLSNCERCTPSYRLLPKN************GAEVLNDHWVSVTSGSE****KH**KNQYEESLFRCEDDRFELDMLLESVNVTTKRVEEL*******************HFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAEI***************************HLEFEYSDPDIHEDLYQLIKY****************IWTTFLEPMLGVPS**********************************************************************************************************************************************************************************************************************************EEDNFAV**E**************
*********MNSQIKRPMISSRGEPSGQTQVVGGGGGGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNSILRD**************************DLSVDRPDPDHDRVLLKSD*************************RDFENDVNRDFSMQR*******************HQGGEGDENFGMHPVSSSYDDKNAMKSMFSQELSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVMSKKSLWNEGRIPKSVK***************************RLDKSVAFVNKDVGPKMSMYSSKDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAEIKEISEKKRKEDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVP*****************************************************************AWLPNGDHGIKEDVSVEADHNARKSDNFCDSSEQDKVQNNAAMADETSGISKQASTNERLIGTNAAIAAAADQSNGRSNIENTSGLSVAHSRPGNHIVEGGLELRSSNEILPSSEGGECSRQNISTNGVMTEGAKILRYNAESVKQFKIEREEGELSPNGDFEEDNFAVYGESGLEAVHKAKDWCC
*****************************************KLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPD******************************************************************************************************************************************************SMFSQELSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVMSKKSLWNEGRIPKSVKVEDRDRDRDRERDDGVKDRDREAREKDRLDKSVAFVNKDV**K*SMYSSKDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAEIKEISEKKRKEDDVL*******RRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVP***********************************************************************************************************************************************************************************************************************************EEDNFA*YGESGLEAV********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKRSRDEVYMNSQIKRPMISSRGEPSGQTQVVGGGGGGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNSILRDRSSAMPTARQVHVDKKERAMASHADRDLSVDRPDPDHDRVLLKSDKDQRRRGEKERERRDDHRRERERDDRDFENDVNRDFSMQRFPHKRKSARKIEDSTAEPLHQGGEGDENFGMHPVSSSYDDKNAMKSMFSQELSFCEKVKDKLRDDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVMSKKSLWNEGRIPKSVKVEDRDRDRDRERDDGVKDRDREAREKDRLDKSVAFVNKDVGPKMSMYSSKDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLxxxxxxxxxxxxxxxxxxxxxTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAEIKEISEKKRKEDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKSHTVKSRAASVGDSDGSPDGDAAAMTSKHSNPSRNGDESIPPEQSSSSRAWLPNGDHGIKEDVSVEADHNARKSDNFCDSSEQDKVQNNAAMADETSGISKQASTNERLIGTNAAIAAAADQSNGRSNIENTSGLSVAHSRPGNHIVEGGLELRSSNEILPSSEGGECSRQNISTNGVMTEGAKILRYNAESVKQFKIEREEGELSPNGDFEEDNFAVYGESGLEAVHKAKDWCC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1031 2.2.26 [Sep-21-2011]
O04539 1326 Paired amphipathic helix yes no 0.894 0.695 0.584 0.0
O48686 1330 Paired amphipathic helix no no 0.888 0.688 0.586 0.0
Q9LFQ3 1367 Paired amphipathic helix no no 0.921 0.694 0.491 0.0
Q9SRH9 1372 Paired amphipathic helix no no 0.934 0.701 0.486 0.0
Q9XIE1 1162 Paired amphipathic helix no no 0.546 0.484 0.415 1e-137
Q9XIK6 1173 Paired amphipathic helix no no 0.559 0.491 0.424 1e-132
Q60520 1274 Paired amphipathic helix yes no 0.265 0.215 0.378 1e-48
Q96ST3 1273 Paired amphipathic helix yes no 0.265 0.215 0.378 2e-48
Q62141 1098 Paired amphipathic helix no no 0.280 0.263 0.37 1e-47
O75182 1162 Paired amphipathic helix no no 0.348 0.308 0.335 1e-46
>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3 Back     alignment and function desciption
 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/1000 (58%), Positives = 718/1000 (71%), Gaps = 78/1000 (7%)

Query: 36   GGGGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFK 95
            GG  AQKLTTNDALAYLKAVKD FQDKR+KYD+FLEVMKDFKAQR+DT GVI RVKELFK
Sbjct: 3    GGSSAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFK 62

Query: 96   GHRDLILGFNTFLPKGYEITLPLEDEQPP-PKKPVEFEEAINFVNKIKTRFQGDDHVYKS 154
            G+R+LILGFNTFLPKG+EITL  ED+QP  PKKPVEFEEAI+FVNKIKTRFQGDD VYKS
Sbjct: 63   GNRELILGFNTFLPKGFEITLRPEDDQPAAPKKPVEFEEAISFVNKIKTRFQGDDRVYKS 122

Query: 155  FLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIH---YVPSGRN 211
            FLDILNMYRKENKSITEVY EV  LF+DH DLL EFTHFLPD+S  AS +    VP    
Sbjct: 123  FLDILNMYRKENKSITEVYHEVAILFRDHHDLLGEFTHFLPDTSATASTNDSVKVP---- 178

Query: 212  SILRDRS-SAMPTARQVHVDKKERAMASHADRDLSVDRPDPDHDRVLLKSDKDQRRRGEK 270
              +RDR   ++PT RQ+ +DKK+R + SH +R L  +  D DH+R LLK  K++ RR +K
Sbjct: 179  --VRDRGIKSLPTMRQIDLDKKDRIITSHPNRALKTENMDVDHERSLLKDSKEEVRRIDK 236

Query: 271  ERERRDDHRRERERDDRDFENDVNRDFSMQRFPHKRKSARKIEDSTAEPLHQGGEGDENF 330
            + +  DD  R   +D R  ++D +++     F  K+K  RK +D +AE   Q  EGD+  
Sbjct: 237  KNDFMDDRDR---KDYRGLDHDSHKE---HFFNSKKKLIRK-DDDSAEMSDQAREGDKFS 289

Query: 331  GMHPVSSSYDDKNAMKSMFSQELSFCEKVKDKL-RDDYQEFLRCLHLYTKEIITRSELQS 389
            G  P SS+YD+K       SQEL+F ++VK KL   D QEFLRCL+LY+KEII++ ELQS
Sbjct: 290  GAIPSSSTYDEKG-----HSQELAFVDRVKAKLDTADNQEFLRCLNLYSKEIISQPELQS 344

Query: 390  LVGDLLGRYPDLMDGFNGFLARCEKSEELLADVMSKKSLWNEGRIPKSVKVEDRDRDRDR 449
            LV DL+G YPDLMD F  FLA+C+K++ LL+ ++SKKSLW+EG+ P+  K  D+D DR+R
Sbjct: 345  LVSDLIGVYPDLMDAFKVFLAQCDKNDGLLSGIVSKKSLWSEGKCPQPTKSLDKDTDRER 404

Query: 450  ERDDGVKDRDREAREKDRLDKSVAFVNKDVGPKMSMYSSKDKYLAKPIQELDLSNCERCT 509
            E+ +  ++RDRE   K+RL+K  A                 +  AKPI ELDLSNCE+CT
Sbjct: 405  EKIERYRERDRE---KERLEKVAA----------------SQKWAKPISELDLSNCEQCT 445

Query: 510  PSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDD 569
            PSYR LPKNY IP ASQ+ E+G++VLNDHWVSVTSGSEDYSFKHMRKNQYEESLF+CEDD
Sbjct: 446  PSYRRLPKNYPIPIASQKMEIGSQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFKCEDD 505

Query: 570  RFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLD 629
            RFELDMLLESV   T RVEELL KIN+N +KTD PI +EDH TALNLRCIERLY DHGLD
Sbjct: 506  RFELDMLLESVISATNRVEELLAKINSNELKTDTPICIEDHLTALNLRCIERLYSDHGLD 565

Query: 630  VMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQ 689
            V+D+L+KNA LALPVILTRLKQKQEEWARCR++FNKVWA+IY+KNYH+SLDHRSFYFKQQ
Sbjct: 566  VLDLLKKNAYLALPVILTRLKQKQEEWARCRTEFNKVWADIYTKNYHRSLDHRSFYFKQQ 625

Query: 690  DSKSLGAKALSAEIKEISEKKRKEDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLI 749
            DSK+L  KAL AEIKEISEKKR EDD LLA+AAGNRR+I  ++ F+Y DPD+HEDLYQLI
Sbjct: 626  DSKNLSTKALLAEIKEISEKKRGEDDALLALAAGNRRTISSNMSFDYPDPDLHEDLYQLI 685

Query: 750  KYSCGEMCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKSHTVKSRAASVGD 809
            KYSCGEMC+TEQLDKVMK+WT FLEP+ GVPSRPQGAED ED VK+ +H  + +  +V  
Sbjct: 686  KYSCGEMCSTEQLDKVMKVWTEFLEPIFGVPSRPQGAEDREDAVKSTNHDREDQEDAV-- 743

Query: 810  SDGSPDGDAAAMTSKHSNPSRNGDESIPPEQSSSSRAWLPNGDHGIKEDVSVEADHNARK 869
               SP   A+   S  SN  R  +ES    Q+S            + +DV+     +A  
Sbjct: 744  ---SPQNGASIANSMRSNGPRKVNESNQVRQASE-----------LDKDVTSSKTSDALL 789

Query: 870  SDNFCDSSEQDKVQNNAAMADETSGISKQASTNERLIGTNA-AIAAAADQSNGRSNIENT 928
            S   CD+++ DK+  N    DE +  +KQA + ER   +NA  +     Q NG+ +  + 
Sbjct: 790  S---CDNTQNDKMPKNLTTPDERAE-TKQAVSIERAHNSNALPLDGLLPQRNGKISSLSV 845

Query: 929  SGLSVAHSRPGNHIVEGGLELRSSNEILPSSEGGECSRQNISTNGVMTEGAKILRYNAES 988
            +GLS ++ +P   +  G  EL+      P+   G   R  I  N V+  G     +  E+
Sbjct: 846  AGLSNSNPKPA--LTSGTEELK------PNYVNG--PRVEIGDNPVIPNGTVAEWFAGEA 895

Query: 989  VKQFKIEREEGELSPNGDFEEDNFAVYGESGLEAVHKAKD 1028
                K+EREEGELSP GDFEEDN+AV+GE+ +EA+ K+K+
Sbjct: 896  ----KVEREEGELSPTGDFEEDNYAVHGENDMEALSKSKE 931
Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.
Arabidopsis thaliana (taxid: 3702)
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=1 SV=3 Back     alignment and function description
>sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9SRH9|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2 Back     alignment and function description
>sp|Q9XIE1|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=2 SV=3 Back     alignment and function description
>sp|Q9XIK6|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis thaliana GN=SNL6 PE=3 SV=2 Back     alignment and function description
>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=3 Back     alignment and function description
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2 Back     alignment and function description
>sp|Q62141|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2 Back     alignment and function description
>sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1031
296086479 1445 unnamed protein product [Vitis vinifera] 0.982 0.701 0.773 0.0
255558338 1452 conserved hypothetical protein [Ricinus 0.982 0.697 0.767 0.0
359473314 1421 PREDICTED: paired amphipathic helix prot 0.959 0.695 0.756 0.0
302399131 1419 WRKY domain class transcription factor [ 0.960 0.697 0.743 0.0
449478506 1419 PREDICTED: LOW QUALITY PROTEIN: paired a 0.959 0.696 0.721 0.0
356498069 1414 PREDICTED: paired amphipathic helix prot 0.958 0.698 0.707 0.0
449434867 1397 PREDICTED: LOW QUALITY PROTEIN: paired a 0.929 0.685 0.722 0.0
356500930 1407 PREDICTED: paired amphipathic helix prot 0.950 0.696 0.693 0.0
356526870 1404 PREDICTED: paired amphipathic helix prot 0.952 0.699 0.675 0.0
224107859 1385 SIN3 component, histone deacetylase comp 0.903 0.672 0.713 0.0
>gi|296086479|emb|CBI32068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1551 bits (4016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 799/1033 (77%), Positives = 895/1033 (86%), Gaps = 20/1033 (1%)

Query: 1    MKRSRDEVYMNSQIKRPMISSRG-EPSGQTQVVGGGGGGGAQKLTTNDALAYLKAVKDIF 59
            MKRSRD+VYM SQ+KRP +SSRG E SGQ Q++GGG     QKLTTNDALAYLKAVKDIF
Sbjct: 1    MKRSRDDVYMGSQLKRPAVSSRGGEGSGQPQMMGGG----TQKLTTNDALAYLKAVKDIF 56

Query: 60   QDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLE 119
            QDKR+KYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLE
Sbjct: 57   QDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLE 116

Query: 120  DEQPPPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEAL 179
            DEQPP KKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEV AL
Sbjct: 117  DEQPPVKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAL 176

Query: 180  FQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNSILRDRSSAMPTARQVHVDKKERAMASH 239
            F DHPDLL EFTHFLPD+S AAS  Y PSGRN + R+R S +P  RQ+  DKKER  ASH
Sbjct: 177  FHDHPDLLVEFTHFLPDTS-AASTQYAPSGRNPMHRERGSLVPPLRQILTDKKERITASH 235

Query: 240  ADRDLSVDRPDPDHDRVLLKSDKDQRRRGEKERERRDDHRRERERDDRDFENDVNRDFS- 298
            ADRDLSVDRPD DHDR+++++D   +RRG ++ + R D R  RERDDRDF++D NRDF+ 
Sbjct: 236  ADRDLSVDRPDTDHDRIIMRAD--NQRRGGEKEKERRDDRDRRERDDRDFDHDGNRDFNG 293

Query: 299  MQRFPHKRKSARKIEDSTAEPLHQGGEGDENFGMHPVSSSYDDKNAMKSMFSQELSFCEK 358
            M R PHKRK  R++EDS A+ ++QGGEG EN+GM P+SSSYDDKNA+KSM++QE  FCEK
Sbjct: 294  MPRVPHKRKVTRRVEDSVADQINQGGEGAENYGMRPMSSSYDDKNALKSMYNQEFVFCEK 353

Query: 359  VKDKLR--DDYQEFLRCLHLYTKEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSE 416
            VK+KLR  D YQEFL+CLH+Y+KEIITR+ELQSLVGDL+G+YPDLMD FN FL RCEK +
Sbjct: 354  VKEKLRQSDSYQEFLKCLHIYSKEIITRTELQSLVGDLIGKYPDLMDEFNEFLTRCEKID 413

Query: 417  ELLADVMSKKSLWNEGRIPKSVKVEDRDRDRDRERDDGVKDRDREAREKDRLDKSVAFVN 476
              LA VMSK+ L      P+SVK+EDRDRDRDRERDD  KDRDRE RE+DRLDKS  F N
Sbjct: 414  GFLAGVMSKRHL------PRSVKIEDRDRDRDRERDDRDKDRDRENRERDRLDKSGGFGN 467

Query: 477  KD-VGPKMSMYSSKDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVL 535
            KD V  KMS++ +K+KY+AKPIQELDLSNCERCTPSYRLLPKNY IPSASQRTELGAEVL
Sbjct: 468  KDAVNQKMSLFQNKEKYMAKPIQELDLSNCERCTPSYRLLPKNYPIPSASQRTELGAEVL 527

Query: 536  NDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKIN 595
            ND+WVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELL+KIN
Sbjct: 528  NDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKIN 587

Query: 596  NNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEE 655
            NNTIKTD PIR+ED+FTALNLRCIERLYGDHGLDVMDVLRKNA+LALPVILTRLKQKQEE
Sbjct: 588  NNTIKTDSPIRIEDYFTALNLRCIERLYGDHGLDVMDVLRKNATLALPVILTRLKQKQEE 647

Query: 656  WARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAEIKEISEKKRKEDD 715
            WARCRSDFNKVWAEIY+KNYHKSLDHRSFYFKQQDSKS   KAL AEIKEISEKKRKEDD
Sbjct: 648  WARCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDSKSSSTKALLAEIKEISEKKRKEDD 707

Query: 716  VLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEP 775
            VLLAIAAGNRR I+P+LEFEY D DIHEDLYQLIKYSCGE+CTTEQLDKVMKIWTTFLEP
Sbjct: 708  VLLAIAAGNRRPIIPNLEFEYPDSDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEP 767

Query: 776  MLGVPSRPQGAEDTEDVVKAKSHTVKSRAASVGDSDGSPDGDAAAMTSKHSNPSRNGDES 835
            MLGVPSRPQGAED+EDVVK KSH  K+ AAS+G+SDGSP G A+A  +K  N SRNGDE+
Sbjct: 768  MLGVPSRPQGAEDSEDVVKTKSHAAKNGAASIGESDGSPGGGASATNTKQINSSRNGDET 827

Query: 836  IPPEQSSSSRAWLPNGDHGIKEDVSVEADHNARKSDNFCDSSEQDKVQNNAAMADETSGI 895
            IPPEQSSS R W+ NGD+G+KED S++AD   RK+D FC S++Q K+Q +AAMADE SG+
Sbjct: 828  IPPEQSSSCRVWMVNGDNGVKEDGSLDADRMPRKADTFCASTQQGKMQTSAAMADEMSGV 887

Query: 896  SKQASTNERLIGTNAAIAAAADQSNGRSNIENTSGLSVAHSRPGNHIVEGGLELRSSNEI 955
            SKQA+ NER+  +NA++A+ A+QS+GR+N+ENTSGL+   SR  N  +E GLELR SNE+
Sbjct: 888  SKQATCNERVTNSNASLASGAEQSHGRTNMENTSGLNATPSRASNTALESGLELRPSNEV 947

Query: 956  LPSSEGGECSRQNISTNGVMTEGAKILRYNAESVKQFKIEREEGELSPNGDFEEDNFAVY 1015
            LPSSE G+C R  ISTNGVMTEG K  RY+ ES    KIEREEGELSPNGDFEEDNFAVY
Sbjct: 948  LPSSEVGDCIRPTISTNGVMTEGVKAHRYHEESAGNSKIEREEGELSPNGDFEEDNFAVY 1007

Query: 1016 GESGLEAVHKAKD 1028
            G++G+E   K+KD
Sbjct: 1008 GDAGVEG--KSKD 1018

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558338|ref|XP_002520196.1| conserved hypothetical protein [Ricinus communis] gi|223540688|gb|EEF42251.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359473314|ref|XP_002267856.2| PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302399131|gb|ADL36860.1| WRKY domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|449478506|ref|XP_004155336.1| PREDICTED: LOW QUALITY PROTEIN: paired amphipathic helix protein Sin3-like 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356498069|ref|XP_003517876.1| PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Glycine max] Back     alignment and taxonomy information
>gi|449434867|ref|XP_004135217.1| PREDICTED: LOW QUALITY PROTEIN: paired amphipathic helix protein Sin3-like 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356500930|ref|XP_003519283.1| PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356526870|ref|XP_003532039.1| PREDICTED: paired amphipathic helix protein Sin3-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224107859|ref|XP_002314629.1| SIN3 component, histone deacetylase complex [Populus trichocarpa] gi|222863669|gb|EEF00800.1| SIN3 component, histone deacetylase complex [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1031
TAIR|locus:2100277 1372 SNL1 "AT3G01320" [Arabidopsis 0.517 0.389 0.473 2.6e-224
TAIR|locus:2147845 1367 SNL2 "AT5G15020" [Arabidopsis 0.519 0.392 0.456 1.9e-217
ZFIN|ZDB-GENE-070620-3 1276 sin3aa "SIN3 homolog A, transc 0.278 0.224 0.368 4.4e-86
UNIPROTKB|F1SJ69 1227 SIN3A "Uncharacterized protein 0.263 0.221 0.379 1.4e-85
UNIPROTKB|F1MTR3 1274 SIN3A "Uncharacterized protein 0.263 0.213 0.379 1.8e-85
DICTYBASE|DDB_G0281045 1934 DDB_G0281045 "paired amphipath 0.262 0.140 0.397 3.5e-85
UNIPROTKB|J9P8L1 1274 SIN3A "Uncharacterized protein 0.264 0.214 0.388 3.8e-85
MGI|MGI:107157 1274 Sin3a "transcriptional regulat 0.263 0.213 0.379 3.8e-85
RGD|1311598 1282 Sin3a "SIN3 transcription regu 0.263 0.212 0.379 4e-85
UNIPROTKB|Q96ST3 1273 SIN3A "Paired amphipathic heli 0.263 0.213 0.379 6.1e-85
TAIR|locus:2100277 SNL1 "AT3G01320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1217 (433.5 bits), Expect = 2.6e-224, Sum P(3) = 2.6e-224
 Identities = 257/543 (47%), Positives = 343/543 (63%)

Query:   489 KDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSED 548
             K +Y+ K IQELDLS+CE CTPSYRLLP +Y IP ASQR+ELGAEVLNDHWVSVTSGSED
Sbjct:   452 KKEYMGKSIQELDLSDCECCTPSYRLLPADYPIPIASQRSELGAEVLNDHWVSVTSGSED 511

Query:   549 YSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVE 608
             YSFKHMR+NQYEESLFRCEDDRFELDMLLESV+   +  E LL  I    I   G  R+E
Sbjct:   512 YSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKISFSGSFRIE 571

Query:   609 DHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWA 668
             DHFTALNLRCIERLYGDHGLDV+D+L KN + ALPVILTRLKQKQ EW +CR DF+KVWA
Sbjct:   572 DHFTALNLRCIERLYGDHGLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDKVWA 631

Query:   669 EIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAGNRRSI 728
              +Y+KN++KSLDHRSFYFKQQDSK+L AK+L A            DDVLL+I+AG R+ I
Sbjct:   632 NVYAKNHYKSLDHRSFYFKQQDSKNLSAKSLLAEIKELKEKSQNDDDVLLSISAGYRQPI 691

Query:   729 VPHLEFEYSDPDIHEDLYQLIKYSCGEMCTT-EQLDKVMKIWTTFLEPMLGVPSRPQGAE 787
              P+LE+EY +  IHED+++++++SC E+C+T EQL KV+++W  FLE +LGVP R +G +
Sbjct:   692 NPNLEYEYLNRAIHEDMFKVVQFSCEELCSTKEQLSKVLRLWENFLEAVLGVPPRAKGTD 751

Query:   788 DTEDVV-KAKSHTVKSRXXXXXXXXXXXXXXXXXMTSKHSNPSRNGDESIPPEQSSSSRA 846
               EDVV   K+  V                    + S+    + NGDE+     +     
Sbjct:   752 LVEDVVINPKTLDVNHSTSPNGEAAVSSGGDTARLASRKLKSAANGDEN-SSSGTFKHGI 810

Query:   847 WLPNGDHGIKEDVS-VEADHNARKSDNFCDSSEQDKVQNNAAMADETSGISKQASTNERL 905
              L N D   KE++  VE    A +    C + +  K Q     A++  G       +ER 
Sbjct:   811 GLLNKDSTGKENLEDVEI---ANRDGVACSAVKPQKEQETGNEAEKRFGKPIPMDISERA 867

Query:   906 IGTNXXXXXXXDQSNGRSNIENTSGLSVAHSRPGNHIVEGGLELRSSNEILPSSEGGECS 965
               ++       + ++     E   G     ++P + + +   ++  S E + S++GG+  
Sbjct:   868 AISSISIPSGAENNHCVVGKEVLPGAHEIQAKPSDTLTDIHHDV-DSIETVHSTQGGDVG 926

Query:   966 RQNISTNGVMTEGAKILRYNAESVKQFKIEREEGELSPNGDFEEDNFAVYGESGLEAVHK 1025
                +  NG+ ++ +K  R + +     + E+EEGELSPNGDFE DNF VY + G+++  K
Sbjct:   927 NSIVLANGLRSDSSKGTRNSDDPEGPSRNEKEEGELSPNGDFE-DNFGVYKDHGVKSTSK 985

Query:  1026 AKD 1028
              ++
Sbjct:   986 PEN 988
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2147845 SNL2 "AT5G15020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070620-3 sin3aa "SIN3 homolog A, transcription regulator (yeast) a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJ69 SIN3A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MTR3 SIN3A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281045 DDB_G0281045 "paired amphipathic helix (PAH) containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|J9P8L1 SIN3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:107157 Sin3a "transcriptional regulator, SIN3A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311598 Sin3a "SIN3 transcription regulator homolog A (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q96ST3 SIN3A "Paired amphipathic helix protein Sin3a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04539SNL4_ARATHNo assigned EC number0.5840.89420.6953yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028927001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (1334 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1031
pfam08295101 pfam08295, Sin3_corepress, Sin3 family co-represso 4e-51
smart00761102 smart00761, HDAC_interact, Histone deacetylase (HD 4e-46
COG5602 1163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 2e-40
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 4e-38
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 4e-19
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 2e-18
pfam0267147 pfam02671, PAH, Paired amphipathic helix repeat 1e-12
COG5602 1163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 1e-07
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 3e-05
COG56021163 COG5602, SIN3, Histone deacetylase complex, SIN3 c 0.002
>gnl|CDD|191990 pfam08295, Sin3_corepress, Sin3 family co-repressor Back     alignment and domain information 
 Score =  174 bits (443), Expect = 4e-51
 Identities = 60/99 (60%), Positives = 71/99 (71%)

Query: 504 NCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESL 563
           NCER  PSYRLLPK+   P  S R EL  EVLND WVSV + SED  FK  RKNQYEE+L
Sbjct: 1   NCERLGPSYRLLPKSEPNPPCSGRDELCKEVLNDTWVSVPTWSEDSGFKAHRKNQYEEAL 60

Query: 564 FRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTD 602
           FRCED+RFELDM++ES   T K +EELL KI++ + +  
Sbjct: 61  FRCEDERFELDMVIESNRSTIKLLEELLNKISDMSDEER 99

This domain is found on transcriptional regulators. It forms interactions with histone deacetylases. Length = 101
>gnl|CDD|214808 smart00761, HDAC_interact, Histone deacetylase (HDAC) interacting Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|202341 pfam02671, PAH, Paired amphipathic helix repeat Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1031
COG5602 1163 SIN3 Histone deacetylase complex, SIN3 component [ 100.0
smart00761102 HDAC_interact Histone deacetylase (HDAC) interacti 100.0
KOG4204231 consensus Histone deacetylase complex, SIN3 compon 100.0
PF08295101 Sin3_corepress: Sin3 family co-repressor; InterPro 100.0
COG5602 1163 SIN3 Histone deacetylase complex, SIN3 component [ 99.86
KOG4204231 consensus Histone deacetylase complex, SIN3 compon 99.86
PF0267147 PAH: Paired amphipathic helix repeat; InterPro: IP 99.44
PF0267147 PAH: Paired amphipathic helix repeat; InterPro: IP 99.34
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-126  Score=1098.97  Aligned_cols=581  Identities=36%  Similarity=0.580  Sum_probs=463.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHhccChhhHHHHHHHHHHHHhcCCChhHHHHHHHHHhhcChhHHHHhhhcCCCCccccCC
Q 001681           38 GGAQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLP  117 (1031)
Q Consensus        38 ~~~~~l~~~dAlsYL~~VK~~F~d~P~vY~~FLdIMkdfk~q~idt~gVi~rV~~LFkgHpdLI~GFN~FLP~gy~I~~~  117 (1031)
                      ...++|+|+|||+||++||.+|.++|++|+.|||||||||+|.|||+|||+||+.||+|||+||+|||+|||+||+|++.
T Consensus       121 ~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S  200 (1163)
T COG5602         121 IPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGS  200 (1163)
T ss_pred             CCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEe
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             CCCC-------------------------------------------CC-C-----------CCCCcchHHHHHHHHHHH
Q 001681          118 LEDE-------------------------------------------QP-P-----------PKKPVEFEEAINFVNKIK  142 (1031)
Q Consensus       118 ~~de-------------------------------------------~~-p-----------~k~~vef~~Ai~FvnKVK  142 (1031)
                      +.+.                                           || |           .+..++|+.||.|||+||
T Consensus       201 ~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vnkVK  280 (1163)
T COG5602         201 LPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVNKVK  280 (1163)
T ss_pred             cCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHHHHH
Confidence            3110                                           00 0           123378999999999999


Q ss_pred             hhcCCChHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhccChhHHHHHchhCCCCCCCCcccccCCCCCccccCCCCCCC
Q 001681          143 TRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVEALFQDHPDLLEEFTHFLPDSSGAASIHYVPSGRNSILRDRSSAMP  222 (1031)
Q Consensus       143 ~RF~~~pevYk~FLeIL~~y~~~~~si~eV~~~V~~LF~~hPDLL~eF~~FLP~~~~~~~~~~~p~~~n~~~~dr~s~~P  222 (1031)
                      .||+++|+.|..||++|++||..++++.|||++|+.||+++|||+++|..|||+....+...+ +..   ..  ....+|
T Consensus       281 ~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~-a~a---q~--p~~~lP  354 (1163)
T COG5602         281 VRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQST-ANA---QK--PSKRLP  354 (1163)
T ss_pred             HhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccccccccccc-ccc---CC--CcccCC
Confidence            999999999999999999999999999999999999999999999999999999865442111 000   00  011223


Q ss_pred             ccccccchh--hhhccccccCCCCCCCCCCCCchhhhhhchhhhhhhhhhhhhccccccccccccccccccccccccccc
Q 001681          223 TARQVHVDK--KERAMASHADRDLSVDRPDPDHDRVLLKSDKDQRRRGEKERERRDDHRRERERDDRDFENDVNRDFSMQ  300 (1031)
Q Consensus       223 ~~~~~~~~k--r~r~~~s~~~~~~s~~~P~~~~~~~~~~~~k~q~~~~~ke~~~~~~~rr~~~~~~~~~~~~~~~~~~~q  300 (1031)
                      +.+.+..++  +.++.|++..     ..|.      ++                   .                      
T Consensus       355 PiG~Fs~p~~a~~~~~ps~~~-----~~p~------~~-------------------~----------------------  382 (1163)
T COG5602         355 PIGSFSLPTAAPEQNRPSLLW-----ESPR------SI-------------------S----------------------  382 (1163)
T ss_pred             CCCCCCCCCcccccCChHHhh-----cCcc------hh-------------------c----------------------
Confidence            222111100  0000011000     0000      00                   0                      


Q ss_pred             cCCcccccccccCCCCCCcCCCCCCCCCCCCCCCCCCcccchhhhhhhhhhHhHHHHHHHHHH--HHHHHHHHHHHHhhh
Q 001681          301 RFPHKRKSARKIEDSTAEPLHQGGEGDENFGMHPVSSSYDDKNAMKSMFSQELSFCEKVKDKL--RDDYQEFLRCLHLYT  378 (1031)
Q Consensus       301 ~~~~k~k~~~k~~d~~~~~~~~~~~~pe~~g~~P~s~~~~dk~a~k~~~~eElaFFDKVKk~L--ke~Y~EFLKcLNLYS  378 (1031)
                      ....+|     + +.........  .|..+. .|++..         . ++.-.||++||.+|  +.+|+|||||||||+
T Consensus       383 ~~~~~r-----~-d~~~S~s~~~--~P~~~~-~P~s~~---------~-~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~  443 (1163)
T COG5602         383 NISRYR-----A-DLLTSFSRNF--VPIRIH-MPISHL---------S-NESEDFFERIKQYLKDKNLYHEFLKLLNLYS  443 (1163)
T ss_pred             cccccc-----c-chhhhhhhhc--CCcccc-CCcccc---------C-CchHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            000000     0 0000000000  001111 121110         1 11227999999999  999999999999999


Q ss_pred             hcCCCHHHHHHHHHHhhcCChhHHHHHhhhcccccchhHHHHhhhhhccccccCCCCCcccccccccccccccCCCcchh
Q 001681          379 KEIITRSELQSLVGDLLGRYPDLMDGFNGFLARCEKSEELLADVMSKKSLWNEGRIPKSVKVEDRDRDRDRERDDGVKDR  458 (1031)
Q Consensus       379 QeIIdr~ELv~lV~~fLG~~PDLm~~FK~FLg~~e~~~g~l~gv~~~~~l~~~g~~~~~~~~e~~~r~~~~~~~~~~ker  458 (1031)
                      |+|||+++||+++-.|||.+.+||.|||+|++|.+..                       + +            .+   
T Consensus       444 Q~iiDk~~Lver~~~~L~sNe~L~~wFk~fi~y~~~~-----------------------~-~------------~~---  484 (1163)
T COG5602         444 QKIIDKNDLVERLFAFLGSNEELIRWFKAFINYSEPE-----------------------K-E------------PL---  484 (1163)
T ss_pred             HhhccHHHHHHHHHHHhcCcHHHHHHHHHHhccCCCC-----------------------C-C------------Cc---
Confidence            9999999999999999999999999999999986521                       0 0            00   


Q ss_pred             hhHHhhhhhcccchhccccCCCCCccccccccccccCCcccccCCCCcccCccccccCcCCCCCCCCCCcccccccccce
Q 001681          459 DREAREKDRLDKSVAFVNKDVGPKMSMYSSKDKYLAKPIQELDLSNCERCTPSYRLLPKNYLIPSASQRTELGAEVLNDH  538 (1031)
Q Consensus       459 d~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ek~~~kp~~elDls~c~r~gpSYRlLPk~~~~~~cSgR~eL~~~VLND~  538 (1031)
                                                     .      -...||+.|+.||||||+||+++...+|||||+|||+||||+
T Consensus       485 -------------------------------~------~~~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~  527 (1163)
T COG5602         485 -------------------------------R------ETRKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDD  527 (1163)
T ss_pred             -------------------------------c------ccccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccc
Confidence                                           0      013688999999999999999999999999999999999999


Q ss_pred             eeec-ccCCCCcccchhchhhhhHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcc----hH
Q 001681          539 WVSV-TSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNTIKTDGPIRVEDHF----TA  613 (1031)
Q Consensus       539 wVS~-t~~SED~~F~~~RKNqyEE~Lfr~EDER~E~D~~IE~~~~tI~~Le~l~~~i~~~~~~~~~~~~l~~~L----~~  613 (1031)
                      |||| ||+|||++|++||||||||+||++||||||||.+||++.+||+.|+.++++|.+|...++..+.|.++|    .+
T Consensus       528 wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~s  607 (1163)
T COG5602         528 WVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRHIEATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKS  607 (1163)
T ss_pred             cccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHH
Confidence            9999 799999999999999999999999999999999999999999999999999999998888877777765    58


Q ss_pred             HHHHHHHHhhC-CchHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhcccCCccccccccc
Q 001681          614 LNLRCIERLYG-DHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSK  692 (1031)
Q Consensus       614 i~~R~I~riYG-d~g~evi~~l~knP~~alPvVL~RLKqK~eEW~~~r~e~nkvWrev~~KNy~KSLDHrs~~FKq~DkK  692 (1031)
                      ||+++|++||| +||.+||++|+++|++|+||||+|||+|++|||+|+|+|||+||+|.+|||||||||||++||+.|||
T Consensus       608 IyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~Kd~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk  687 (1163)
T COG5602         608 IYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMKDEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKK  687 (1163)
T ss_pred             HHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccc
Confidence            99999999999 79999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHHHHHhhhhhhHHHHHHhcCCCCCCCCceeecCChhHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHH
Q 001681          693 SLGAKALSAEIKEISEKKRKEDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTT--EQLDKVMKIWT  770 (1031)
Q Consensus       693 ~ls~K~Ll~EIk~i~e~k~~e~d~l~~~a~g~~~p~~p~l~f~y~D~~I~~D~~~LI~y~~~~~~ss--e~~~ki~~~~~  770 (1031)
                      .||+|.||.||..++.++..-   +      ......-++.|.|+|.-|+.|++.|..-..-.+++.  .+++++..++.
T Consensus       688 ~lstk~il~eidd~~q~kih~---~------~~~k~~fqf~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk  758 (1163)
T COG5602         688 ILSTKNILEEIDDRSQAKIHV---S------IDDKKVFQFVFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLK  758 (1163)
T ss_pred             cchHHHHHHHhhHhhhcceee---e------cCccccceeeeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHH
Confidence            999999999999776654211   0      011123488899999999999999965443333332  68899999999


Q ss_pred             HhhhhccCCC
Q 001681          771 TFLEPMLGVP  780 (1031)
Q Consensus       771 ~Fl~~ff~i~  780 (1031)
                      +||..||++.
T Consensus       759 ~~~slff~~~  768 (1163)
T COG5602         759 TIVSLFFLLC  768 (1163)
T ss_pred             HHHHHHhhhh
Confidence            9999999944

>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting Back     alignment and domain information
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators Back     alignment and domain information
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics] Back     alignment and domain information
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat Back     alignment and domain information
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1031
2rmr_A71 Solution Structure Of Msin3a Pah1 Domain Length = 7 1e-18
2rmr_A71 Solution Structure Of Msin3a Pah1 Domain Length = 7 2e-06
2czy_A77 Solution Structure Of The NrsfREST-Msin3b Pah1 Comp 2e-16
2czy_A77 Solution Structure Of The NrsfREST-Msin3b Pah1 Comp 3e-08
2cr7_A80 Solution Structure Of The First Pah Domain Of The M 6e-15
2cr7_A80 Solution Structure Of The First Pah Domain Of The M 1e-07
1g1e_B89 Nmr Structure Of The Human Mad1 Transrepression Dom 3e-14
2l9s_B94 Solution Structure Of Pf1 Sid1-Msin3a Pah2 Complex 5e-14
2f05_A105 Solution Structure Of Free Pah2 Domain Of Msin3b Le 5e-11
1e91_A85 Structure Of The Complex Of The Mad1-Sin3b Interact 1e-10
2ld7_B75 Solution Structure Of The Msin3a Pah3-Sap30 Sid Com 2e-08
>pdb|2RMR|A Chain A, Solution Structure Of Msin3a Pah1 Domain Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 41  QKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDL 100
           Q+L   DAL+YL  VK  F  + + Y+DFL++MK+FK+Q IDT GVI+RV +LFKGH DL
Sbjct: 1   QRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDL 60
Query: 101 ILGFNTFLPKG 111
           I+GFNTFLP G
Sbjct: 61  IMGFNTFLPPG 71
>pdb|2RMR|A Chain A, Solution Structure Of Msin3a Pah1 Domain Length = 71 Back     alignment and structure
>pdb|2CZY|A Chain A, Solution Structure Of The NrsfREST-Msin3b Pah1 Complex Length = 77 Back     alignment and structure
>pdb|2CZY|A Chain A, Solution Structure Of The NrsfREST-Msin3b Pah1 Complex Length = 77 Back     alignment and structure
>pdb|2CR7|A Chain A, Solution Structure Of The First Pah Domain Of The Mouse Transcriptional Repressor Sin3b Length = 80 Back     alignment and structure
>pdb|2CR7|A Chain A, Solution Structure Of The First Pah Domain Of The Mouse Transcriptional Repressor Sin3b Length = 80 Back     alignment and structure
>pdb|1G1E|B Chain B, Nmr Structure Of The Human Mad1 Transrepression Domain Sid In Complex With Mammalian Sin3a Pah2 Domain Length = 89 Back     alignment and structure
>pdb|2L9S|B Chain B, Solution Structure Of Pf1 Sid1-Msin3a Pah2 Complex Length = 94 Back     alignment and structure
>pdb|2F05|A Chain A, Solution Structure Of Free Pah2 Domain Of Msin3b Length = 105 Back     alignment and structure
>pdb|1E91|A Chain A, Structure Of The Complex Of The Mad1-Sin3b Interaction Domains Length = 85 Back     alignment and structure
>pdb|2LD7|B Chain B, Solution Structure Of The Msin3a Pah3-Sap30 Sid Complex Length = 75 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1031
2czy_A77 Paired amphipathic helix protein SIN3B; SIN3, PAH1 8e-39
2czy_A77 Paired amphipathic helix protein SIN3B; SIN3, PAH1 2e-23
2czy_A77 Paired amphipathic helix protein SIN3B; SIN3, PAH1 3e-10
2cr7_A80 Paired amphipathic helix protein SIN3B; paired amp 6e-38
2cr7_A80 Paired amphipathic helix protein SIN3B; paired amp 6e-23
2cr7_A80 Paired amphipathic helix protein SIN3B; paired amp 3e-10
1g1e_B89 SIN3A; four-helix bundle, protein-peptide complex, 9e-33
1g1e_B89 SIN3A; four-helix bundle, protein-peptide complex, 3e-19
1g1e_B89 SIN3A; four-helix bundle, protein-peptide complex, 5e-07
2f05_A105 Paired amphipathic helix protein SIN3B; helix bund 1e-32
2f05_A105 Paired amphipathic helix protein SIN3B; helix bund 5e-24
2f05_A105 Paired amphipathic helix protein SIN3B; helix bund 3e-07
1e91_A85 Paired amphipathic helix protein SIN3B; eukaryotic 5e-32
1e91_A85 Paired amphipathic helix protein SIN3B; eukaryotic 1e-24
1e91_A85 Paired amphipathic helix protein SIN3B; eukaryotic 8e-08
2ld7_B75 Paired amphipathic helix protein SIN3A; transcript 9e-26
2ld7_B75 Paired amphipathic helix protein SIN3A; transcript 5e-11
2ld7_B75 Paired amphipathic helix protein SIN3A; transcript 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-17
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus} Length = 77 Back     alignment and structure
 Score =  137 bits (348), Expect = 8e-39
 Identities = 41/75 (54%), Positives = 49/75 (65%)

Query: 43  LTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLIL 102
           +   DAL YL  VK  F      Y+ FLE+MK+FK+Q IDT GVI RV +LF  H DLI+
Sbjct: 2   VHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIV 61

Query: 103 GFNTFLPKGYEITLP 117
           GFN FLP GY I +P
Sbjct: 62  GFNAFLPLGYRIDIP 76
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus} Length = 77 Back     alignment and structure
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus} Length = 77 Back     alignment and structure
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A Length = 80 Back     alignment and structure
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A Length = 80 Back     alignment and structure
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A Length = 80 Back     alignment and structure
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B Length = 89 Back     alignment and structure
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B Length = 89 Back     alignment and structure
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B Length = 89 Back     alignment and structure
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1 Length = 105 Back     alignment and structure
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1 Length = 105 Back     alignment and structure
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1 Length = 105 Back     alignment and structure
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A Length = 85 Back     alignment and structure
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A Length = 85 Back     alignment and structure
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A Length = 85 Back     alignment and structure
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus} Length = 75 Back     alignment and structure
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus} Length = 75 Back     alignment and structure
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus} Length = 75 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1031
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 4e-27
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 8e-26
d2f05a185 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [Tax 6e-14
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 7e-26
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 3e-24
d1s5qb_89 a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 7e-13
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure

class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (258), Expect = 4e-27
 Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 126 KKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKE----------NKSITEVYQE 175
              VEF  AI++VNKIKTRF     +Y+SFL+IL+ Y+KE            S  EV+ E
Sbjct: 2   SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTE 61

Query: 176 VEALFQDHPDLLEEFTHFLPDS 197
           V  LF+   DLL EF  FLP++
Sbjct: 62  VANLFRGQEDLLSEFGQFLPEA 83
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 85 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1031
d2f05a185 Sin3B {Mouse (Mus musculus) [TaxId: 10090]} 99.83
d1s5qb_89 Sin3A {Mouse (Mus musculus) [TaxId: 10090]} 99.82
d1s5qb_89 Sin3A {Mouse (Mus musculus) [TaxId: 10090]} 99.71
d2f05a185 Sin3B {Mouse (Mus musculus) [TaxId: 10090]} 99.7
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: PAH2 domain
superfamily: PAH2 domain
family: PAH2 domain
domain: Sin3B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.2e-21  Score=161.64  Aligned_cols=74  Identities=31%  Similarity=0.666  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHHCCHHHHHHHHHCCC
Q ss_conf             998874479999999999843384649999999999773289946----------7999999996049369978652189
Q 001681           40 AQKLTTNDALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTA----------GVIARVKELFKGHRDLILGFNTFLP  109 (1031)
Q Consensus        40 ~~~l~v~dAlsYL~~VK~rF~d~P~vY~~FLeIMkdFksq~idt~----------gVi~RV~~LF~GhpdLI~GFNtFLP  109 (1031)
                      ..++.++||++||++||.+|+++|++|++||+||++|+.++|+++          +|+.||+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP   81 (85)
T d2f05a1           2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             98643999999999999998358799999999999999861133344545677999999999998448899999997784


Q ss_pred             CCCC
Q ss_conf             9864
Q 001681          110 KGYE  113 (1031)
Q Consensus       110 ~gy~  113 (1031)
                      .||+
T Consensus        82 ~~~~   85 (85)
T d2f05a1          82 EAKR   85 (85)
T ss_dssp             GGGC
T ss_pred             CCCC
T ss_conf             6559
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure