Citrus Sinensis ID: 001687

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------103
MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccc
ccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccEEEEEcccccccccccHHHccHHHHHHcccccEEEEcccccEEEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHcccccccHcccccccHHHHHHHHccccccccHHHHHccHHHHHHHcccHHHcccHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccc
maemannapysgaqvphqppmvgsmdpprgfgppipsqyrplvpapqpqhyvpmasqhfqpggqgglimnagfpsqplqppfrplmhplparpgppapshvppppqvmslpnaqpsnhippsslprpnvqalssyppglgglgrpvaasytfapssygqpqlignvnigsqqpmsqmhvpsisaggqlgvsvsqstvsstpvqptdeqmaattasaplptlqpksaegvqtdwkehtsadgrryyfnkrtrvstwdkpFELMTTIEradastdwkeftspdgrkyyYNKVtkqskwslpdELKLAREQAEKASikgtqsetspnsqtsisfpssvvkapssadisssTVEVIVSSPVAVVPIIaasetqpalvsvpstspvitssvvanadgfpktvdaiapmidvsssigeavtdNTVAEAKNnlsnmsasdlvgasdkvpppvteetrkdavrgekvSDALEEKTVEQEHFAYANKLEAKNAFKALLESanvgsdwtwDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYcikvkdsppymavasntsgstpkdLFEDVVEELQKQFQEDKTRIKDAVKLRKITlsstwtfedfkasvledatsppisdvnLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSqefssigdesicrGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERARERekedhskkdgadsdhddsaendskrsgkdndkkhrkrhqsahdsldenekdrsknphrhnsdrkkprrlastpesenesrhkrhrrdnrngsrkngdhedledgeyggesr
maemannapysgaqvphqPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTasaplptlqpksaegvqtdwkehtsadgrryyfnkrtrvstwdkpfELMTtieradastdwkeftspdgrkyyynkvtkqskwslpdELKLAREQAEKAsikgtqsetspnsqtsisFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASetqpalvsvpstspVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLsnmsasdlvgasdkvpppvteetrkdavrgekvsDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTlgerktafneylgqkkkqdaeeRRLKLKKARDDYKKMLeesveltsstrwskavtmfenderfkalererdrkdmfddhlDELKQKERAKAQEERKRNIIEyrkflescdfikantqwrkvqdrleadercsrldkmdrLEIFQEYLNDLEKEEEEQRKiqkeelskterknrdefrkLMEADVAlgtltaktnwrdYCIKVKDSPPYMAVAsntsgstpkDLFEDVVEELQKQfqedktrikdaVKLRkitlsstwtfEDFKasvledatsppisdvnlkLIFDDLLIKVKEKEEkeakkrkrledefFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQakdyerkrkeekakrekereerdrrklkqgrdkerarerekedhskkdgadsdhddsaendskrsgkdndkkhrkrhqsahdsldenekdrsknphrhnsdrkkprrlastpesenesrhkrhrrdnrngsrkngdhedledgeyggesr
MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRplmhplparpgppapshvppppqvmsLPNAQPSNHIPPSSLPRPNVQALSSYppglgglgRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGvsvsqstvsstpvqptDEQMaattasaplptlQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADIssstvevivsspvavvpiiaaseTQPALvsvpstspvitssvvANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFqeylndlekeeeeqrkiqkeelSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIkvkekeekeakkrkrledeFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYerkrkeekakrekereerdrrklkQGrdkerarerekedHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
*************************************************************************************************************************************************VAASYTFA*********I*****************************************************************************GRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVT*********************************************************VEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDV*****************************************************************HFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEY**************************************************************************************NIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYL*******************************LMEADVALGTLTAKTNWRDYCIKVKDS**Y********************************RIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKV***************DEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQL*********************************************************************************************************************************************************
*************************************************************************************************************************************************************************************************************************************************RRY********************************FTSPDGRKYYYN********************************************************************************QP**VSVP************************************************************************************************************FKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEY*********************************TSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLD******************************************RLEADERCSRLDKMDRLEIFQEYLND**************************FRKLMEAD**********NWRDYCIKVKDSP***************DLFEDVVEELQ*******TRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLL********************FFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEF*************************************************************************************************************************************************************
*************QVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLG************************ASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR******************************************VEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEY************RLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLE***************KTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAK****************************************************************************************************************************************************
*****************************GFGPPIPSQYRPLVPA*QPQHYVPMASQHFQPGGQGGLIMNA*****PLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTV****************************************SADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEK*********************************************VAVVP*********************************************************************************************R***V***********EHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYE*************************************************************************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKxxxxxxxxxxxxxxxxxxxxxxxxSVELTSSTRWSKAVTMFENDERFKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVxxxxxxxxxxxxxxxxxxxxxRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLxxxxxxxxxxxxxxxxxxxxxFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEREKEDHSKKDGADSDHDDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYGGESR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1029 2.2.26 [Sep-21-2011]
F4JCC1992 Pre-mRNA-processing prote yes no 0.937 0.972 0.470 0.0
B6EUA9958 Pre-mRNA-processing prote no no 0.913 0.981 0.489 0.0
Q9R1C7953 Pre-mRNA-processing facto yes no 0.608 0.656 0.309 7e-63
O75400957 Pre-mRNA-processing facto yes no 0.623 0.670 0.298 1e-62
Q80W14870 Pre-mRNA-processing facto no no 0.415 0.491 0.325 2e-40
O14176695 Pre-mRNA-processing prote yes no 0.542 0.802 0.241 2e-40
Q6NWY9871 Pre-mRNA-processing facto no no 0.408 0.482 0.321 2e-39
P34600724 WW domain-containing prot yes no 0.478 0.679 0.262 2e-38
Q9LT25835 Pre-mRNA-processing prote no no 0.507 0.625 0.255 6e-14
O147761098 Transcription elongation no no 0.246 0.231 0.226 3e-11
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 Back     alignment and function desciption
 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1047 (47%), Positives = 667/1047 (63%), Gaps = 82/1047 (7%)

Query: 4    MANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGG 63
            MANN  Y G Q P Q P   S+D PRGF PP+  Q+ P + APQ +    ++SQ+FQ  G
Sbjct: 1    MANNHQYPGIQ-PFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQCVG 59

Query: 64   QGGLIMNAGFPSQPLQPPFRPLMHPLPARP---GPPAPSHVP-PPPQVMSLPNAQPSNHI 119
            +GG +++ G+P Q   P     MH    RP         HVP  PP ++S PN   ++  
Sbjct: 60   RGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIAS-- 117

Query: 120  PPSSLPRPNVQALSSYPPGLGG----LGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMS 175
              +SL +P VQ      PG GG       P A SY     S   PQ+ G           
Sbjct: 118  -GTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSYE---GSRVPPQVTG----------- 162

Query: 176  QMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKE 235
                PSI +  Q   S+  ++  S+ + PT EQ  A         L+P  ++   TDW E
Sbjct: 163  ----PSIHSQAQQRASIIHTSAESSIMNPTFEQPKAAF-------LKPLPSQKALTDWVE 211

Query: 236  HTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSK 295
            HTSADGR+Y+FNKRT+ STW+KP ELMT  ERADA TDWKE +SPDGRKYYYNK+TKQS 
Sbjct: 212  HTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQST 271

Query: 296  WSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSS 355
            W++P+E+K+ REQAE AS++G      P+++  I     + ++ +++  + + +    S+
Sbjct: 272  WTMPEEMKIVREQAEIASVQG------PHAEGIIDASEVLTRSDTASTAAPTGLPSQTST 325

Query: 356  PVAVVPIIAASET-QPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAV 414
               V  +   S+  QPA  SVP +S     S V N D    + D  + + D S + G +V
Sbjct: 326  SEGVEKLTLTSDLKQPA--SVPGSS-----SPVENVDRVQMSADETSQLCDTSETDGLSV 378

Query: 415  --TDNTVAEA--KNNLS--------NMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDA 462
              T+ + A    K+ +S        +MS  +    S   P    +E++K  V  EKV   
Sbjct: 379  PVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGP----KESQKPMVESEKVESQ 434

Query: 463  LEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGER 522
             EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+RYGALRTLGER
Sbjct: 435  TEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGER 494

Query: 523  KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK 582
            K AFNE+L Q K+   EER  + KK  +D+K+MLEE VELT STRWSK VTMFE+DERFK
Sbjct: 495  KQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFK 554

Query: 583  ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 642
            ALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK N+QWRKVQDR
Sbjct: 555  ALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDR 614

Query: 643  LEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADV 702
            LE DERCSRL+K+D+LEIFQEYL DLE+EEEE++KIQKEEL K ERK+RDEF  L++  +
Sbjct: 615  LEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHI 674

Query: 703  ALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 762
            A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+  E K++IKD
Sbjct: 675  ATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKD 734

Query: 763  AVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKR 822
             +KLRK+ LS+  TF++FK S+ ED   P I DV LKL+FDDLL + KEKEEKEA+K+ R
Sbjct: 735  VLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTR 794

Query: 823  LEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKD 882
              ++  D+L S K+I+A+S+WE  + L+EGS++ S+IGDES  +  F+++V+ LKEQ+  
Sbjct: 795  QTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYVSLLKEQSN- 853

Query: 883  YERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE---N 939
               + K+ K   E  REE D+ + K GR+K+R RER+ +DH KK  A   + D  E    
Sbjct: 854  ---RIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGKYNHDMNEPHGK 910

Query: 940  DSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPR-RLASTPESENESR 998
            + +RSG+D+  +HR+RH S    + EN+ D  K  H+     KK R +     E+E E +
Sbjct: 911  ERRRSGRDSHNRHRERHTS----VKENDTDHFKESHKAGGGHKKSRHQRGWVSEAEVEGK 966

Query: 999  HKRHRRDNRNGSRKNGDHEDLEDGEYG 1025
             KR R++    +R++   E+LEDGE G
Sbjct: 967  EKRRRKEE---AREHTKEEELEDGECG 990
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II.
Arabidopsis thaliana (taxid: 3702)
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 Back     alignment and function description
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 Back     alignment and function description
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 Back     alignment and function description
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=2 SV=2 Back     alignment and function description
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1 Back     alignment and function description
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1 Back     alignment and function description
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1 Back     alignment and function description
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1029
255562210956 protein binding protein, putative [Ricin 0.921 0.991 0.613 0.0
3565743331072 PREDICTED: pre-mRNA-processing factor 40 0.954 0.916 0.561 0.0
3565342661017 PREDICTED: pre-mRNA-processing factor 40 0.963 0.974 0.556 0.0
3021421641030 unnamed protein product [Vitis vinifera] 0.964 0.963 0.545 0.0
224060893972 predicted protein [Populus trichocarpa] 0.898 0.951 0.552 0.0
449484509983 PREDICTED: pre-mRNA-processing protein 4 0.939 0.983 0.539 0.0
3594925321020 PREDICTED: pre-mRNA-processing factor 40 0.941 0.95 0.537 0.0
2241272281019 predicted protein [Populus trichocarpa] 0.943 0.952 0.509 0.0
449465095796 PREDICTED: pre-mRNA-processing protein 4 0.761 0.984 0.588 0.0
3565540261002 PREDICTED: pre-mRNA-processing factor 40 0.940 0.966 0.515 0.0
>gi|255562210|ref|XP_002522113.1| protein binding protein, putative [Ricinus communis] gi|223538712|gb|EEF40313.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1091 bits (2822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1013 (61%), Positives = 747/1013 (73%), Gaps = 65/1013 (6%)

Query: 25   MDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRP 84
            MDPPR F PP+P Q+RP+VPA Q Q ++P+AS HFQP G+G  +MNAG PSQP Q  F P
Sbjct: 1    MDPPRNFVPPMPMQFRPVVPAQQSQQFIPVASPHFQPVGRGVPLMNAGLPSQPPQSQFPP 60

Query: 85   LMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPP-SSLPRPNVQALSSYPPGLGGLG 143
             +   P+RPG P     P   QV+SLPNAQ + H+   SSLP P+V    +Y PGLGG G
Sbjct: 61   SVQQFPSRPGQPGHGPPPS--QVISLPNAQANRHVTSGSSLPPPSVPTSINYAPGLGGPG 118

Query: 144  RPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVS-VSQSTVSSTPV 202
             P+++SYTF PSSYGQP +  N  +   QP+SQM  PSI AGG  G S V+QS    TP+
Sbjct: 119  APLSSSYTFVPSSYGQPPVAANT-VSQYQPISQMRPPSIPAGGLAGSSSVNQSITPVTPM 177

Query: 203  QPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELM 262
            Q   EQ + T    P      K  E    DWKEH +A+GRRYY+NKRTR S+W+KPFELM
Sbjct: 178  QLNGEQSSVTNDLHPT-----KPNEETTMDWKEHLAANGRRYYYNKRTRQSSWEKPFELM 232

Query: 263  TTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETS 322
            T IERADASTDWKEF SP+GR YYYNK TKQSKW +P+ELKLAR++ EKAS+   Q++T 
Sbjct: 233  TPIERADASTDWKEFASPEGRTYYYNKTTKQSKWEIPEELKLARKRLEKASLVEAQADTL 292

Query: 323  PNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVI 382
             NS      P SV KAPS AD SS T +V  SSPV V P+ AA + Q    S      V+
Sbjct: 293  ANSHVPAFVPPSVDKAPSVADASSLTAQVTPSSPVPVTPVAAAVDLQSQPASESPGLAVM 352

Query: 383  TSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVP 442
             SS+ +N+D                       T+N V            S + G S+KV 
Sbjct: 353  ASSLTSNSDEV-------------------QTTENIV------------STVSGRSEKVN 381

Query: 443  PPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQ 502
                             S  +EEK V QE   Y +KLEAKNAFKALLESA+VGSDWTWDQ
Sbjct: 382  -----------------SIGIEEKIVSQEPLTYTDKLEAKNAFKALLESASVGSDWTWDQ 424

Query: 503  ALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVEL 562
            A+R IINDRRYGALRTLGERK AFNEYL QKKKQDAEERR K KKAR+++K MLEES EL
Sbjct: 425  AMRVIINDRRYGALRTLGERKQAFNEYLSQKKKQDAEERRSKQKKAREEFKNMLEESKEL 484

Query: 563  TSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRK 622
            TS+ RWSKAVT+FENDERFKA+ERERDR+D+FD  L EL  KERAKAQEERKRNI+EYR+
Sbjct: 485  TSTMRWSKAVTLFENDERFKAVERERDRRDIFDSFLQELGDKERAKAQEERKRNIMEYRQ 544

Query: 623  FLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEE 682
            FLESCDFIKA+TQWRKVQDRLEADERCSRL+K+DRLEIFQ+YL DLEKEEEEQRKIQKEE
Sbjct: 545  FLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQRKIQKEE 604

Query: 683  LSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLF 742
              K ERKNRDEFRKL+E  VA GT+TAKT+WRDY +KVKD P Y+AVASNTSGSTPKDLF
Sbjct: 605  QRKAERKNRDEFRKLLEEHVAAGTMTAKTHWRDYYLKVKDLPAYLAVASNTSGSTPKDLF 664

Query: 743  EDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIF 802
            EDV+EEL+KQ+ EDK+RIKDAVKL+K+ ++STWT +D KA+++ED +SP ISD+NLK++F
Sbjct: 665  EDVLEELEKQYHEDKSRIKDAVKLKKVAMASTWTLDDLKAAIVEDISSPSISDMNLKIVF 724

Query: 803  DDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDE 862
            D+LL + KEKEEK+AKKRKRL D+F +LL S K+I+A+S WE+C++L EGS+EFSSI +E
Sbjct: 725  DELLERAKEKEEKDAKKRKRLADDFLNLLHSTKDITASSKWESCKELFEGSREFSSINEE 784

Query: 863  SICRGVFDEFVTQLKEQAKDYERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKED 922
            SIC+ +F+E++ QLKE AK+ ERKRKEEKAK+EKEREE+DRRK K  RDK+R  EREKE 
Sbjct: 785  SICQDIFEEYIAQLKEHAKENERKRKEEKAKKEKEREEKDRRKAKHRRDKDRGHEREKE- 843

Query: 923  HSKKDGADSDH----DDSAENDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHN 978
            H KK+ AD+      DD   ND+KRS  D++KK RKRH  A D L+E+EKDRSK+ HRH+
Sbjct: 844  HMKKEEADTGSADTTDDHFNNDNKRSVNDSNKKQRKRHHDAEDDLNESEKDRSKSSHRHS 903

Query: 979  SDRKKPRRLASTPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYG--GESR 1029
            SD KK +  ASTP+S+ ESRHKRH+RD+RNGSR+ GDHE+LEDGE+G  GE+R
Sbjct: 904  SDHKKSKWHASTPDSDGESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDGETR 956

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574333|ref|XP_003555303.1| PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Glycine max] Back     alignment and taxonomy information
>gi|356534266|ref|XP_003535678.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine max] Back     alignment and taxonomy information
>gi|302142164|emb|CBI19367.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224060893|ref|XP_002300284.1| predicted protein [Populus trichocarpa] gi|222847542|gb|EEE85089.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449484509|ref|XP_004156902.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359492532|ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127228|ref|XP_002320019.1| predicted protein [Populus trichocarpa] gi|222860792|gb|EEE98334.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465095|ref|XP_004150264.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356554026|ref|XP_003545351.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1029
TAIR|locus:2091171992 PRP40B "pre-mRNA-processing pr 0.758 0.786 0.449 2.2e-189
TAIR|locus:2194894958 PRP40A "pre-mRNA-processing pr 0.588 0.632 0.458 8.3e-171
UNIPROTKB|F1RQH2957 PRPF40A "Uncharacterized prote 0.757 0.814 0.268 1.5e-77
RGD|1311401953 Prpf40a "PRP40 pre-mRNA proces 0.753 0.813 0.277 1e-75
UNIPROTKB|O75400957 PRPF40A "Pre-mRNA-processing f 0.757 0.814 0.266 1.9e-74
MGI|MGI:1860512953 Prpf40a "PRP40 pre-mRNA proces 0.753 0.813 0.275 1.9e-74
UNIPROTKB|G3MZC7958 PRPF40A "Uncharacterized prote 0.763 0.820 0.261 3.1e-74
DICTYBASE|DDB_G0283543681 prp40 "FF domain-containing pr 0.407 0.615 0.285 4e-68
ZFIN|ZDB-GENE-030131-274851 prpf40a "PRP40 pre-mRNA proces 0.600 0.726 0.256 4.7e-67
ASPGD|ASPL0000052549798 AN1249 [Emericella nidulans (t 0.394 0.508 0.257 1.1e-62
TAIR|locus:2091171 PRP40B "pre-mRNA-processing protein 40B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1681 (596.8 bits), Expect = 2.2e-189, Sum P(2) = 2.2e-189
 Identities = 367/817 (44%), Positives = 490/817 (59%)

Query:   222 QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPD 281
             +P  ++   TDW EHTSADGR+Y+FNKRT+ STW+KP ELMT  ERADA TDWKE +SPD
Sbjct:   198 KPLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPD 257

Query:   282 GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPN-SQTSISFPSSVVKAPS 340
             GRKYYYNK+TKQS W++P+E+K+ REQAE AS++G  +E   + S+      ++   AP+
Sbjct:   258 GRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPT 317

Query:   341 SADIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPKTVDAI 400
                                         QPA                 N D    + D  
Sbjct:   318 GLP------SQTSTSEGVEKLTLTSDLKQPA-------SVPGSSSPVENVDRVQMSADET 364

Query:   401 APMIDVSSSIGEAV--TDNTVAEA--KNNLS--NMSASDLVGA--SDKVPPPVTEETRKD 452
             + + D S + G +V  T+ + A    K+ +S  N   SD +    +++      +E++K 
Sbjct:   365 SQLCDTSETDGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKP 424

Query:   453 AVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRR 512
              V  EKV    EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+R
Sbjct:   425 MVESEKVESQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKR 484

Query:   513 YGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAV 572
             YGALRTLGERK AFNE+L Q K+   EER  + KK  +D+K+MLEE VELT STRWSK V
Sbjct:   485 YGALRTLGERKQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTV 544

Query:   573 TMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKA 632
             TMFE+DERFKALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK 
Sbjct:   545 TMFEDDERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKP 604

Query:   633 NTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRD 692
             N+QWRKVQDRLE DERCSRL+K+D+LEIF                       K ERK+RD
Sbjct:   605 NSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRD 664

Query:   693 EFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQ 752
             EF  L++  +A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+
Sbjct:   665 EFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKR 724

Query:   753 FQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIXXXXX 812
               E K++IKD +KLRK+ LS+  TF++FK S+ ED   P I DV LKL+FDDLL      
Sbjct:   725 DHELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEK 784

Query:   813 XXXXXXXXXXXXXXFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEF 872
                             D+L S K+I+A+S+WE  + L+EGS++ S+IGDES  +  F+++
Sbjct:   785 EEKEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDY 844

Query:   873 VTQLKEQAKDYXXXXXXXXXXXXXXXXXXXXXXXXQGXXXXXXXXXXXXXHSKKDGADSD 932
             V+ LKEQ+                            G             H KK  A   
Sbjct:   845 VSLLKEQSN----RIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGKY 900

Query:   933 HDDSAE---NDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLAS 989
             + D  E    + +RSG+D+  +HR+RH S    + EN+ D  K  H+     KK R    
Sbjct:   901 NHDMNEPHGKERRRSGRDSHNRHRERHTS----VKENDTDHFKESHKAGGGHKKSRHQRG 956

Query:   990 -TPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYG 1025
                E+E E + KR R++    +R++   E+LEDGE G
Sbjct:   957 WVSEAEVEGKEKRRRKEE---AREHTKEEELEDGECG 990
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008380 "RNA splicing" evidence=IPI
GO:0070063 "RNA polymerase binding" evidence=IPI
TAIR|locus:2194894 PRP40A "pre-mRNA-processing protein 40A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQH2 PRPF40A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1311401 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O75400 PRPF40A "Pre-mRNA-processing factor 40 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1860512 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZC7 PRPF40A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283543 prp40 "FF domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-274 prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000052549 AN1249 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4JCC1PR35B_ARATHNo assigned EC number0.47080.93780.9727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I1075
hypothetical protein (972 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1029
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 5e-29
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 6e-16
pfam0184650 pfam01846, FF, FF domain 7e-13
smart0044155 smart00441, FF, Contains two conserved F residues 1e-12
pfam0184650 pfam01846, FF, FF domain 3e-12
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 1e-08
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-08
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-08
pfam0039730 pfam00397, WW, WW domain 2e-08
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 4e-08
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 5e-08
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 1e-07
PRK12678 672 PRK12678, PRK12678, transcription termination fact 1e-07
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 3e-07
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 4e-07
PRK12678 672 PRK12678, PRK12678, transcription termination fact 4e-07
PRK12678 672 PRK12678, PRK12678, transcription termination fact 5e-07
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-07
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 5e-07
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 5e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-07
pfam0039730 pfam00397, WW, WW domain 9e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-06
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 1e-06
pfam04487206 pfam04487, CITED, CITED 4e-06
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 7e-06
smart0044155 smart00441, FF, Contains two conserved F residues 2e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 2e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 3e-05
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 3e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 3e-05
pfam07271279 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 3e-05
COG5104590 COG5104, PRP40, Splicing factor [RNA processing an 4e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 4e-05
pfam0184650 pfam01846, FF, FF domain 6e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 6e-05
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 6e-05
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 6e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-05
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 7e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 9e-05
pfam02948174 pfam02948, Amelogenin, Amelogenin 9e-05
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 1e-04
pfam13908177 pfam13908, Shisa, Wnt and FGF inhibitory regulator 1e-04
pfam11029136 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 3e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 3e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 4e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-04
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 7e-04
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.001
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 0.001
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
pfam10243 506 pfam10243, MIP-T3, Microtubule-binding protein MIP 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.003
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information 
 Score =  123 bits (309), Expect = 5e-29
 Identities = 89/414 (21%), Positives = 182/414 (43%), Gaps = 21/414 (5%)

Query: 478 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 537
           K EA+  F  +L+   V S W   +A+  + + R +        RK  F +Y   ++K  
Sbjct: 145 KEEAEKEFITMLKENQVDSTWPIFRAIEELRDPRYWMVDTDPLWRKDLFKKYFENQEKDQ 204

Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 597
            EE   K +K  +++ KML  +  +   T W    ++F     + ++  E+ ++  F  +
Sbjct: 205 REEEENKQRKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKY 264

Query: 598 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSR------ 651
            D+L   E+   +      +    + L S    +    W       ++  R  +      
Sbjct: 265 KDKLGCYEKYVGKHMGGTALGRLEEVLRSLGS-ETFIIWLLNHYVFDSVVRYLKNKEMKP 323

Query: 652 LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKT 711
           LD+ D L  F  Y+  LEKE     + +K   ++  R +RDEFR L+    + G +  + 
Sbjct: 324 LDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRM 383

Query: 712 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITL 771
            W++    +KD P ++ +   T GS+P DLF D + +L+  +   +   +   +  +I+ 
Sbjct: 384 KWKNAYPLIKDDPRFLNLLGRT-GSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISP 442

Query: 772 SSTWTFEDFKASVLE-----DATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE 826
           +     ++   ++ E     +     +   ++ LI D L+ +  EK +++ +  +R+ ++
Sbjct: 443 TDRRAVDEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQ 502

Query: 827 FFDLLCSVKEISAT-------STWENCRQLLEGSQEFSSIGDE-SICRGVFDEF 872
                  + + + T       STW+   + L  S E+ ++GDE +I R +F++F
Sbjct: 503 KKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDF 556

Length = 590
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|218108 pfam04487, CITED, CITED Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|128718 smart00441, FF, Contains two conserved F residues Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 Back     alignment and domain information
>gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|202007 pfam01846, FF, FF domain Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator Back     alignment and domain information
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1029
COG5104590 PRP40 Splicing factor [RNA processing and modifica 100.0
KOG0155617 consensus Transcription factor CA150 [Transcriptio 100.0
KOG0152463 consensus Spliceosomal protein FBP11/Splicing fact 100.0
KOG0155617 consensus Transcription factor CA150 [Transcriptio 100.0
COG5104590 PRP40 Splicing factor [RNA processing and modifica 99.91
KOG0152463 consensus Spliceosomal protein FBP11/Splicing fact 99.7
PF0184651 FF: FF domain; InterPro: IPR002713 The FF domain m 99.15
smart0044155 FF Contains two conserved F residues. A novel moti 99.03
PF0184651 FF: FF domain; InterPro: IPR002713 The FF domain m 98.91
smart0044155 FF Contains two conserved F residues. A novel moti 98.86
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.52
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 98.47
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.36
cd0020131 WW Two conserved tryptophans domain; also known as 98.35
KOG1891271 consensus Proline binding protein WW45 [General fu 98.29
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 98.25
cd0020131 WW Two conserved tryptophans domain; also known as 98.11
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.09
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 98.05
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 97.98
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 97.97
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.71
PHA032473151 large tegument protein UL36; Provisional 97.5
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 97.39
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 97.36
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 97.31
KOG3259163 consensus Peptidyl-prolyl cis-trans isomerase [Pos 97.26
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 97.24
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 96.81
KOG2893341 consensus Zn finger protein [General function pred 96.6
KOG1847878 consensus mRNA splicing factor [RNA processing and 96.38
KOG2985306 consensus Uncharacterized conserved protein [Funct 95.63
KOG2985306 consensus Uncharacterized conserved protein [Funct 95.48
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 95.21
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 95.09
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 94.82
PHA03378991 EBNA-3B; Provisional 94.4
PHA03378991 EBNA-3B; Provisional 93.85
KOG0151877 consensus Predicted splicing regulator, contains R 93.75
KOG4592728 consensus Uncharacterized conserved protein [Funct 93.43
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 93.31
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 92.71
KOG0150336 consensus Spliceosomal protein FBP21 [RNA processi 92.53
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 92.41
KOG06081034 consensus Warts/lats-like serine threonine kinases 92.35
KOG3161861 consensus Predicted E3 ubiquitin ligase [Posttrans 92.25
PF07223358 DUF1421: Protein of unknown function (DUF1421); In 91.88
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 91.87
PF05890271 Ebp2: Eukaryotic rRNA processing protein EBP2; Int 90.34
PF09770808 PAT1: Topoisomerase II-associated protein PAT1; In 89.57
KOG4274742 consensus Positive cofactor 2 (PC2), subunit of a 89.22
PF09770808 PAT1: Topoisomerase II-associated protein PAT1; In 89.12
KOG3209984 consensus WW domain-containing protein [General fu 88.48
KOG2199462 consensus Signal transducing adaptor protein STAM/ 87.44
KOG1847878 consensus mRNA splicing factor [RNA processing and 87.04
PF03154982 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 86.92
KOG2236483 consensus Uncharacterized conserved protein [Funct 86.53
KOG3582856 consensus Mlx interactors and related transcriptio 85.88
KOG4307944 consensus RNA binding protein RBM12/SWAN [General 85.49
PF03154982 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 85.04
KOG06081034 consensus Warts/lats-like serine threonine kinases 84.16
KOG1450650 consensus Predicted Rho GTPase-activating protein 83.78
KOG3209984 consensus WW domain-containing protein [General fu 83.59
KOG3702 681 consensus Nuclear polyadenylated RNA binding prote 83.42
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 82.66
KOG3794453 consensus CBF1-interacting corepressor CIR and rel 82.52
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 81.44
KOG0150336 consensus Spliceosomal protein FBP21 [RNA processi 81.4
KOG1923830 consensus Rac1 GTPase effector FRL [Signal transdu 81.38
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-71  Score=601.03  Aligned_cols=528  Identities=25%  Similarity=0.423  Sum_probs=424.2

Q ss_pred             CCCCCCcEEEEcCCCCeeeeccCccccccCCCcccchhhcccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHH
Q 001687          227 EGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAR  306 (1029)
Q Consensus       227 ~~~~~~W~e~~d~~Gr~YYyN~~T~~stWe~P~~~~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~  306 (1029)
                      ..+.+.|++.+++|||+||||..|+.|+|++|.+++...|..+...+|+++.+.||++||||..|+||+|..|.+.+...
T Consensus        11 ~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~KkVe   90 (590)
T COG5104          11 GEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKKVE   90 (590)
T ss_pred             ccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhccC
Confidence            34467899999999999999999999999999999888887778889999999999999999999999999999976422


Q ss_pred             HHHHHhhhcCCCCCCCCCCCCccCCCCCcccCCCCccCCCccchhhccCCcccccccccccCCccccCCCCCCCcccccc
Q 001687          307 EQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSV  386 (1029)
Q Consensus       307 e~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  386 (1029)
                      .-++.    . .        +.+|-                  .+.++.-.+++                          
T Consensus        91 ~~~eQ----K-~--------~~~S~------------------i~~ngn~~ait--------------------------  113 (590)
T COG5104          91 PIAEQ----K-H--------DERSM------------------IGGNGNDMAIT--------------------------  113 (590)
T ss_pred             cHHhh----h-h--------HHHHH------------------hccCCCccccc--------------------------
Confidence            11110    0 0        00000                  00000000000                          


Q ss_pred             ccccCCCCCcccccCccccccccccccccchhHHHhhhcccccccccccCCCCCCCCCchhhhhhhccccccccchhHHh
Q 001687          387 VANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEK  466 (1029)
Q Consensus       387 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~k~~~~~~~k~~~~~e~k  466 (1029)
                          ++.     ...|        +..  .+.....|++.+                              ++       
T Consensus       114 ----~~e-----~~eP--------~~~--~~~~~sQy~~~s------------------------------t~-------  137 (590)
T COG5104         114 ----DHE-----TSEP--------KYL--LGRLMSQYGITS------------------------------TK-------  137 (590)
T ss_pred             ----ccc-----cccc--------hhH--HHHHHHhhcchh------------------------------HH-------
Confidence                000     0000        000  000111111110                              00       


Q ss_pred             hhhhhhhhccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhhcCccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001687          467 TVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRT-LGERKTAFNEYLGQKKKQDAEERRLKL  545 (1029)
Q Consensus       467 ~~~~e~~~~~tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~-~~ERKqlFeeY~~~~~k~E~eekr~~~  545 (1029)
                          ..+-..|+|+|+.+|+.||++++|+++|+|.++++.+ -|||||.|.+ +.+||.+|++|+.+..+++++++..++
T Consensus       138 ----~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~  212 (590)
T COG5104         138 ----DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQ  212 (590)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHH
Confidence                1122358999999999999999999999999999999 8999998875 579999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001687          546 KKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLE  625 (1029)
Q Consensus       546 kkare~F~~lLee~~~I~~~trW~~a~~~~~~Dprfkav~~e~eRe~lFeeyi~~L~kkEke~~~~~rkka~~ef~~lL~  625 (1029)
                      .+.+++|.+||..+..|.+||.|.+|..+|.++|.|+++.++.+.+++|++|++.|-.-+++-.+..+..++.+|..+|.
T Consensus       213 ~k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr  292 (590)
T COG5104         213 RKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLR  292 (590)
T ss_pred             HHHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHH
Confidence            99999999999998899999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             hcccccCCCcHHHHHHHhhhhhhhhc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001687          626 SCDFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLME  699 (1029)
Q Consensus       626 ~~~~I~~~T~W~ev~~~l~~D~r~~~------l~~~DrlelFed~I~~LekeeeE~kk~~k~~~rR~eRK~Rd~Fk~LL~  699 (1029)
                      +++ -...++|.-.+-.|..++||..      |+..|.|--|.+|++.|+++.--.....+.+..+.+|++||+|+.||.
T Consensus       293 ~l~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr  371 (590)
T COG5104         293 SLG-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLR  371 (590)
T ss_pred             hcC-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            986 4567899977777888888853      567788889999999999988766666677778999999999999999


Q ss_pred             HHhhcCccccCCChHHHHHHHhcChhhhhhhcCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCHHH
Q 001687          700 ADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFED  779 (1029)
Q Consensus       700 e~~~~g~I~~~T~W~d~~~~ikdd~rf~~l~~g~~gStpldLF~D~Veel~~~~~e~K~~i~d~lk~~~i~v~~~wt~ee  779 (1029)
                      ++.-.|+|+..++|+++||+|+|||||++|+ |++||+|||||+|+|-+|+..|...|+.+.+++..++|.++.+-..++
T Consensus       372 ~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~vde  450 (590)
T COG5104         372 KLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAVDE  450 (590)
T ss_pred             HhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccchHH
Confidence            9999999999999999999999999999997 899999999999999999999999999999998889998887777777


Q ss_pred             HHHHHh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHH-Hhhhc--c-CCCCCCcHHHHH
Q 001687          780 FKASVL-----EDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE---FFD-LLCSV--K-EISATSTWENCR  847 (1029)
Q Consensus       780 f~~~l~-----ed~r~~~i~~~~lk~iFe~li~r~keKee~e~rk~~R~~~~---F~~-lL~~~--~-~I~~~stWee~k  847 (1029)
                      +.+.+.     .+..+..|+.+++.+|.+.+|.+.-|+-.......||+.+.   ++. ||..+  + .-...++|+-+-
T Consensus       451 i~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~t~~~t~k~k~st~D~~~  530 (590)
T COG5104         451 IFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDLAS  530 (590)
T ss_pred             HHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCcchHHHHH
Confidence            666554     34557888999999999999876655544334444555443   334 44432  2 345679999999


Q ss_pred             HHhcCcccccccCCh-hhHHHHHHHHHH
Q 001687          848 QLLEGSQEFSSIGDE-SICRGVFDEFVT  874 (1029)
Q Consensus       848 ~~i~~~~ey~~L~~e-~~r~~~F~e~i~  874 (1029)
                      ..|...-||++|++| ..|+.+|++|--
T Consensus       531 k~L~Es~E~k~~~DE~N~~Rq~fED~k~  558 (590)
T COG5104         531 KELGESLEYKALGDEDNIRRQIFEDFKP  558 (590)
T ss_pred             HHHhHhHHHHHhcchhHHHHHhhhcCCc
Confidence            999999999999987 567899999865

>KOG0155 consensus Transcription factor CA150 [Transcription] Back     alignment and domain information
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] Back     alignment and domain information
>KOG0155 consensus Transcription factor CA150 [Transcription] Back     alignment and domain information
>COG5104 PRP40 Splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] Back     alignment and domain information
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] Back     alignment and domain information
>smart00441 FF Contains two conserved F residues Back     alignment and domain information
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] Back     alignment and domain information
>smart00441 FF Contains two conserved F residues Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>KOG1891 consensus Proline binding protein WW45 [General function prediction only] Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>KOG2893 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG1847 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG2985 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2985 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PHA03378 EBNA-3B; Provisional Back     alignment and domain information
>PHA03378 EBNA-3B; Provisional Back     alignment and domain information
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] Back     alignment and domain information
>KOG4592 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences Back     alignment and domain information
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division [] Back     alignment and domain information
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription] Back     alignment and domain information
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division [] Back     alignment and domain information
>KOG3209 consensus WW domain-containing protein [General function prediction only] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1847 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene Back     alignment and domain information
>KOG2236 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription] Back     alignment and domain information
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] Back     alignment and domain information
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene Back     alignment and domain information
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG3209 consensus WW domain-containing protein [General function prediction only] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] Back     alignment and domain information
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1029
2l5f_A92 Solution Structure Of The Tandem Ww Domains From Hy 5e-15
1o6w_A75 Solution Structure Of The Prp40 Ww Domain Pair Of T 1e-09
2kzg_A71 The Structure Of An Ff Domain From Human HypaFBP11 4e-09
2jxw_A75 Solution Structure Of The Tandem Ww Domains Of Fbp2 5e-06
2lks_A50 Ff11-60 Length = 50 7e-06
2l9v_A49 Nmr Structure Of The Ff Domain L24a Mutant's Foldin 5e-05
3hfh_A190 Crystal Structure Of Tandem Ff Domains Length = 190 4e-04
1e0l_A37 Fbp28ww Domain From Mus Musculus Length = 37 8e-04
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11 Length = 92 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 51/78 (65%)
Query: 225 SAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRK 284
           +A G ++ W EH S DGR YY+N  T+ STW+KP +L T  E+  +   WKE+ S  G+ 
Sbjct: 8   TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKT 67
Query: 285 YYYNKVTKQSKWSLPDEL 302
           YYYN  TK+S+W+ P EL
Sbjct: 68  YYYNSQTKESRWAKPKEL 85
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75 Back     alignment and structure
>pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate At Atomic Resolution Length = 71 Back     alignment and structure
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21 Length = 75 Back     alignment and structure
>pdb|2LKS|A Chain A, Ff11-60 Length = 50 Back     alignment and structure
>pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding Transition State Length = 49 Back     alignment and structure
>pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains Length = 190 Back     alignment and structure
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus Length = 37 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1029
3hfh_A190 Transcription elongation regulator 1; helix bundle 3e-42
3hfh_A190 Transcription elongation regulator 1; helix bundle 3e-19
3hfh_A190 Transcription elongation regulator 1; helix bundle 1e-09
3hfh_A190 Transcription elongation regulator 1; helix bundle 3e-08
3hfh_A190 Transcription elongation regulator 1; helix bundle 1e-05
3hfh_A190 Transcription elongation regulator 1; helix bundle 2e-05
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 5e-26
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 6e-08
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 7e-26
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 1e-07
2jxw_A75 WW domain-binding protein 4; WW domain containing 1e-23
2jxw_A75 WW domain-binding protein 4; WW domain containing 1e-07
2jxw_A75 WW domain-binding protein 4; WW domain containing 1e-07
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 6e-22
1uzc_A71 Hypothetical protein FLJ21157; nuclear protein, st 2e-04
2doe_A83 Transcription elongation regulator 1; FF domain, s 8e-17
2doe_A83 Transcription elongation regulator 1; FF domain, s 4e-06
2doe_A83 Transcription elongation regulator 1; FF domain, s 8e-06
2doe_A83 Transcription elongation regulator 1; FF domain, s 4e-05
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 2e-14
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 8e-14
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 4e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-12
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-12
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-11
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-10
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-06
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 1e-11
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 2e-10
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 2e-11
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 3e-10
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 1e-10
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 5e-10
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-10
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-07
2dod_A82 Transcription elongation regulator 1; FF domain, s 4e-09
2dod_A82 Transcription elongation regulator 1; FF domain, s 3e-04
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 1e-07
2cqn_A77 Formin-binding protein 3; FF domain, structural ge 3e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 2e-07
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 4e-07
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 1e-05
2dk7_A73 Transcription elongation regulator 1; structural g 1e-06
2dk7_A73 Transcription elongation regulator 1; structural g 2e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-04
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 9e-06
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 2e-05
1dx0_A219 Prion protein; brain, repeat; NMR {Bos taurus} SCO 3e-05
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 2e-05
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 3e-05
1ymz_A43 CC45; artificial protein, computational design, un 4e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 6e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-04
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 1e-04
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 1e-04
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 2e-04
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 2e-04
2j1d_G483 DAAM1, disheveled-associated activator of morphoge 3e-04
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng 3e-04
2dof_A85 Transcription elongation regulator 1; FF domain, s 4e-04
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 6e-04
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
 Score =  151 bits (383), Expect = 3e-42
 Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 4/189 (2%)

Query: 478 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 537
                  F  +L    V +  TW+  L  I+ D RY  L    ER   F++Y+  + +++
Sbjct: 4   GSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLLNPX-ERXQVFDQYVXTRAEEE 62

Query: 538 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 597
             E    + +A +D+  M+EE+        +S+       D RF A+E   DR+ +F++ 
Sbjct: 63  RREXXNXIMQAXEDFXXMMEEAX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEF 121

Query: 598 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD- 656
           +   +  E   +    +    ++ + L +   + + ++W  V D +E+D R   +D    
Sbjct: 122 VAAARXXEXEDSXTRGEXIXSDFFELLSNHH-LDSQSRWSXVXDXVESDPRYXAVDSSSM 180

Query: 657 RLEIFQEYL 665
           R ++F +Y+
Sbjct: 181 REDLFXQYI 189
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 Back     alignment and structure
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 Back     alignment and structure
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36 Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43 Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37 Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49 Back     alignment and structure
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41 Back     alignment and structure
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1029
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 1e-17
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 1e-11
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 2e-05
d1uzca_69 a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T 0.002
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 7e-16
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 2e-12
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 9e-08
d2doea170 a.159.2.1 (A:784-853) Transcription elongation reg 5e-07
d2b7ea156 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP 2e-15
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 1e-13
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 1e-11
d2doda169 a.159.2.1 (A:651-719) Transcription elongation reg 9e-06
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 2e-13
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 3e-09
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 5e-13
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 4e-11
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 1e-12
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 2e-12
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 1e-06
d2dofa172 a.159.2.1 (A:888-959) Transcription elongation reg 8e-04
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 7e-11
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 9e-11
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 2e-10
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 6e-10
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 3e-10
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 8e-10
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 2e-05
d1i5hw_50 b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain 5e-04
d1tk7a145 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) 3e-05
d1tk7a145 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) 7e-04
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 6e-05
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 0.003
d2jmfa133 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII 1e-04
d2jmfa133 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII 0.001
d1jmqa_46 b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens 2e-04
d1jmqa_46 b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens 0.004
d1v9da_332 a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 0.001
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (187), Expect = 1e-17
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 469 EQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNE 528
            ++ + +  K EAK AFK LL+   V S+ +W+QA++ IIND RY AL  L E+K AFN 
Sbjct: 3   AKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA 62

Query: 529 YLGQKKK 535
           Y  Q +K
Sbjct: 63  YKVQTEK 69
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 Back     information, alignment and structure
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1029
d1uzca_69 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 99.42
d2b7ea156 Pre-mRNA-processing protein PRP40 {Baker's yeast ( 99.41
d2doda169 Transcription elongation regulator 1 {Human (Homo 99.31
d2doea170 Transcription elongation regulator 1 {Human (Homo 99.17
d2dofa172 Transcription elongation regulator 1 {Human (Homo 99.14
d2dofa172 Transcription elongation regulator 1 {Human (Homo 98.84
d2doea170 Transcription elongation regulator 1 {Human (Homo 98.83
d1uzca_69 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 98.69
d2doda169 Transcription elongation regulator 1 {Human (Homo 98.64
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.47
d2cqna164 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 98.46
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.36
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 98.29
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.22
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 98.19
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 98.17
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 98.15
d2b7ea156 Pre-mRNA-processing protein PRP40 {Baker's yeast ( 97.98
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 97.89
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 97.88
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 97.82
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 97.74
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 97.73
d2cqna164 Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} 97.7
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 97.65
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 97.6
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 97.45
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 97.42
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 97.35
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 97.35
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 97.35
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 97.26
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 93.8
d2ho2a133 Amyloid beta A4 precursor protein-binding family B 93.68
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 82.51
d1eg3a338 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 80.97
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Hypa/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8e-14  Score=115.04  Aligned_cols=65  Identities=48%  Similarity=0.744  Sum_probs=60.5

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             54310489999999999997289999885999999863584433568937999999999999988
Q 001687          471 EHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKK  535 (1029)
Q Consensus       471 e~~~~~tkeEAk~aFk~LL~e~~V~s~~tWe~a~~~i~~DpRy~al~~~~ERKq~FeeYi~~~~k  535 (1029)
                      ....|+++++|+.+|+.||++++|+++|+|++++++|++||||++|.+.++|+++|++||.++.+
T Consensus         5 ~~~~~~~keeak~~F~~LL~e~~v~~~~~W~~~~~~~~~DpRy~ai~~~~eRe~lF~ey~~~~~k   69 (69)
T d1uzca_           5 KTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEK   69 (69)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf             10001369999999999999859899997999999863694433059888999999999999729
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure