Citrus Sinensis ID: 001690

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------103

MDFDVGIEDVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQEKEELEAEKKQAEALQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMNIIPHQSSYF

ccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHccHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHcccccccccHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccc

cccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHccccccHHHccccEEEEccccHHHHHHHHHHHcccccccccccEccccccccHHHHHHHHHHHHHHcccccccccHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccEEEcccccHEcccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHcEEEEEcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEEcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccc

MDFDVGIEDVGIAVLQELWNRVALQAVdiasetrdvvlgkdslqgFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQEKEELEAEKKQAEALQLTQLMQLLYSTelvrrpqdeaiptycqvypieslvcplcnelmedpvaivcGHSFERKAIQEHFqrggkncptcrqellsldlmpnlslRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRetlgekigntKDCITIMVSLLhnnnpnlsqKAHDVLQNLSHNTHFAVKMAeagyfqpfvacfnrGSQETRALMASALRNMRldessiktlkDRQFIHNVIQMlssnspvcksACLKCIKTLIAHSKMVKhllldpatiPLLLGLIQFvrsdphlkHEAAEILALMVggcqhpqfelhhGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFssldsdqpvVRRWAMRLIHCIsegnpngvplppspgketaiNTVAAIFTcspdveerSLAAGIIsqlpkddiyvdeVLCKSEALKAIHEVICSmdgrhngirtpacqDASLLEIALAALlhftdptkpelqrqvgklevypSLIRVLSTGSSLAKQRAASALadlsqstsvsVSNATLTAKQTKTLMPMFDMTKLLLSMSWccsswgdhqsscsvhgaacspretfclvkadavkPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMniiphqssyf

MDFDVGIEDVGIAVLQELWNRVALQAvdiasetrdvvlgkdslQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQEKEELEAEKKQAEALQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLRFQNAiikinsddqsrRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSeltkretlgekigNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFssldsdqpVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIIsqlpkddiYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALadlsqstsvsvsnatltakqtktlmPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMniiphqssyf

MDFDVGIEDVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKsrsrlrlllqsnsvlsrMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVaaaeaiaseiersaLQNNKNRENALELLRKIAEAVGASVNASLVQTelellkqekeeleaekkqaealqlTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQEllsldlmpnlslRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHllldpatiplllglIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDaslleialaallHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKlllsmswccsswGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVaeaaltaletllaDHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMNIIPHQSSYF

***DVGIEDVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAA**********************LELLRKIAEAVGASVNASLVQT*********************LQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKI**********************QYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASAL*********IKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISE****************AINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLS**********************************TKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMNII*******

*****G**DVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDV*************AALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDS*******************************************************************************TQLMQ**********************YPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLR*****************SALEEMKNIMELPQ**E*AAKAGLIP*****************KCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIK*LKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS**HLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVI*****************ASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTS************TKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSE******************VLMQMNIIPH*****

MDFDVGIEDVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQEK*********AEALQLTQLMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLS***************************ATLTAKQTKTLMPMFDMTKLLLSMSWCCSSW************ACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMNIIPHQSSYF

****VGIEDVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNASLVQTELELLKQEKEELEAEKKQAEALQLTQLMQLLYSTEL************CQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDG***GIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQS****************TLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMNIIPHQSS*F

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MDFDVGIEDVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSLDVKKIESVIGLEFTKAAxxxxxxxxxxxxxxxxxxxxxSRLRLLLQSNSVLSRMQHLAREIAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAAAEAIASEIERSALQNNKNRENALELLRKIAEAVGASVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMQLLYSTELVRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERILIQLLDDDALKKKVALVLMQMNIIPHQSSYF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1028	2.2.26 [Sep-21-2011]
Q9SFX2		811	U-box domain-containing p	yes	no	0.684	0.868	0.280	1e-43
Q9LM76		801	U-box domain-containing p	no	no	0.668	0.857	0.267	5e-35
Q9CAA7		1033	Putative U-box domain-con	no	no	0.652	0.649	0.249	4e-33
Q8GUG9		612	U-box domain-containing p	no	no	0.229	0.385	0.295	3e-15
Q681N2		660	U-box domain-containing p	no	no	0.284	0.442	0.246	6e-14
Q9C9A6		628	U-box domain-containing p	no	no	0.351	0.574	0.245	4e-12
Q8VZ40		632	U-box domain-containing p	no	no	0.173	0.281	0.297	2e-11
Q9ZV31		654	U-box domain-containing p	no	no	0.413	0.649	0.230	4e-11
Q9SNC6		660	U-box domain-containing p	no	no	0.294	0.459	0.230	6e-11
Q9XIJ5		697	U-box domain-containing p	no	no	0.296	0.437	0.227	6e-11

>sp\|Q9SFX2\|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1	Back alignment and function desciption

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 218/776 (28%), Positives = 365/776 (47%), Gaps = 72/776 (9%)

Query: 250 PTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKN-----CPTCRQE 304
           P    +Y  E+ +CPL  ++M +PV +  G +FER+AI++ FQ   +N     CP   +E
Sbjct: 20  PGIDNIY--EAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKE 77

Query: 305 LLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQS-----RRKSALEEMKNIME 359
           L   DL P+++LR++IEEW+ R       N  +K++   QS        + L  +KN+ E
Sbjct: 78  LSITDLSPSIALRNTIEEWRAR-------NDALKLDIARQSLYLGNAETNILLALKNVRE 130

Query: 360 LPQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKC-----LYFLAKYSDIHKEAIVEAGAV 414
           + +   K  +    P+LV  + D   S+   ++C     L  + +  +  K  + E   V
Sbjct: 131 ICRNIRKIRQRVCNPQLVRLITDMLKSSSHEVRCKALQTLQVVVEGDEESKAIVAEGDTV 190

Query: 415 RRIVKQICK--GETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLS--Q 470
           R IVK + +   +    A+ VL EL+K E L EKIG+    I ++V L  + + N+S  +
Sbjct: 191 RTIVKFLSQEPSKGREAAVSVLFELSKSEALCEKIGSIHGAIILLVGLTSSKSENVSTVE 250

Query: 471 KAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTL 530
           KA   L NL  +     +MA  G  QP +A    GS ET+  MA  L  + L+ + +K +
Sbjct: 251 KADKTLTNLERSEENVRQMAINGRLQPLLAKLLEGSPETKVSMAFYLGVLALN-NDVKVI 309

Query: 531 KDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRS 590
             +    ++I ++ +     + A L  +  + +     K LL++   +P L+  + +V  
Sbjct: 310 VAQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAK-LLINTGILPPLIKDLFYVGP 368

Query: 591 DP---HLKHEAAEILALMVG-GCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQ 646
           +     LK  +A ILA +V  G    +  +    Q L SE  V   LQL +NT  E + +
Sbjct: 369 NQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQLTSNTGPEIQGK 428

Query: 647 FLHLLVKLCYKSEKVRNLIES--NNDAITQLFSSLD-SDQPVVRRWAMRLIHCIS----E 699
            L +LV L      V N++ +  N+ AI  L   ++  +   +R  +++L+H IS    E
Sbjct: 429 LLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIKLLHNISPHMSE 488

Query: 700 GNPNGVPLPPSPGKETAINTVAAIFTCSPDV-EERSLAAGIISQLPKDDIYVDEVLCKSE 758
              N   L  + G+  ++  V+ I   +P + EE++ AAG++++LP+ D+ +   L +  
Sbjct: 489 ELANA--LRSTVGQLGSL--VSIISENTPTITEEQAAAAGLLAELPERDLVLTMRLLREG 544

Query: 759 AL-KAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEV-Y 816
           A  K I +++    G   GIR     + + LE  ++ L   T     E    +   E   
Sbjct: 545 AFEKIISKIVGIRQGEIRGIRF----ERTFLEGLVSILARITFALTKETDATLFCCEKNL 600

Query: 817 PSL-IRVLSTGSSLAKQRA-ASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLS 874
           PSL + +L + S    QRA A+AL +LS  +            +  T +P        +S
Sbjct: 601 PSLFLDLLQSNSQDNIQRASATALENLSLES------------KNLTKIPELPPPTYCVS 648

Query: 875 MSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALET 934
           +  C S        C +H   CS RE+FCLV+  AV  LV  L+     V   AL AL T
Sbjct: 649 IFSCLSKPPVVLGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALST 708

Query: 935 LLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDL--FQMIQKHTRITD 988
           LL D   +   + +I ++ G+  IL VL    L  +T+ L +    M+++  RI +
Sbjct: 709 LLEDGLDVVQGVRLIDEADGITPILNVL----LENRTENLRIRAVWMVERILRIEE 760

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9LM76\|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1	Back alignment and function description

>sp\|Q9CAA7\|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1	Back alignment and function description

>sp\|Q8GUG9\|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2	Back alignment and function description

>sp\|Q681N2\|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2	Back alignment and function description

>sp\|Q9C9A6\|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1	Back alignment and function description

>sp\|Q8VZ40\|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZV31\|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1	Back alignment and function description

>sp\|Q9SNC6\|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1	Back alignment and function description

>sp\|Q9XIJ5\|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1028
224053589		1049	predicted protein [Populus trichocarpa]	0.999	0.979	0.641	0.0
225425308		1085	PREDICTED: U-box domain-containing prote	0.997	0.944	0.628	0.0
296085549		995	unnamed protein product [Vitis vinifera]	0.967	1.0	0.616	0.0
104294986		981	U-box domain-containing protein [Musa ac	0.936	0.981	0.429	0.0
302762895		1013	hypothetical protein SELMODRAFT_167271 [	0.949	0.963	0.312	1e-106
302756745		1014	hypothetical protein SELMODRAFT_77566 [S	0.947	0.960	0.312	1e-105
168041108		1020	predicted protein [Physcomitrella patens	0.960	0.967	0.293	2e-98
168041621		1020	predicted protein [Physcomitrella patens	0.959	0.966	0.295	2e-97
168052874		1022	predicted protein [Physcomitrella patens	0.885	0.890	0.298	1e-94
302757095		1002	hypothetical protein SELMODRAFT_77081 [S	0.957	0.982	0.297	9e-87

>gi\|224053589\|ref\|XP_002297887.1\| predicted protein [Populus trichocarpa] gi\|222845145\|gb\|EEE82692.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1298 bits (3359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/1050 (64%), Positives = 835/1050 (79%), Gaps = 23/1050 (2%)

Query: 1    MDFDVGIEDVGIAVLQELWNRVALQAVDIASETRDVVLGKDSLQGFSRTIGELSTLMQSL 60
            MDF+ GIEDVG+AVLQELWN+VA QA++I +ETRDVVL KDSLQ FSR+I ELSTL+++L
Sbjct: 1    MDFNNGIEDVGVAVLQELWNKVAFQAMEIVTETRDVVLEKDSLQEFSRSILELSTLLRAL 60

Query: 61   DVKKIESVIGLEFTKAALETLGAQLREAHNIIDDYKSRSRLRLLLQSNSVLSRMQHLARE 120
            D K++ES +GLE TKAALETL +QLREA  II  YKS S LRLLL S+S+  +MQ+L++E
Sbjct: 61   DAKRVESAMGLESTKAALETLNSQLREAAKIIKGYKSGSCLRLLLHSHSIRLQMQNLSKE 120

Query: 121  IAITISSFQLVNLEIALNLKAMTDQIVDSLRSMEFQSVAAAEAIASEIERSALQNNKNRE 180
            +A+TISSFQLVNL+++LNLK M +QI+++LRS+EF+S  A E +A EIE S  Q+++N+E
Sbjct: 121  MAMTISSFQLVNLDMSLNLKTMINQIINNLRSIEFRSTVATETLAFEIENSISQHSRNQE 180

Query: 181  NALELLRKIAEAVGASVNASLVQTELELLKQEKEELEAEKKQAEALQLTQLMQLLYSTEL 240
            N+++LL KIAEAVGA  NASLVQ EL LLKQEKEE+E +KKQAEALQL QL+QLLYST++
Sbjct: 181  NSMKLLEKIAEAVGARENASLVQNELALLKQEKEEMEDQKKQAEALQLAQLIQLLYSTDI 240

Query: 241  VRRPQDEAIPTYCQVYPIESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPT 300
            V RPQ+E I  Y Q YPI S +CPLCNE+M DPVAI CGHSFERKAIQ+ F RG +NCPT
Sbjct: 241  VTRPQNEEISMYHQQYPINSFICPLCNEMMTDPVAIFCGHSFERKAIQDCFNRGERNCPT 300

Query: 301  CRQELLSLDLMPNLSLRSSIEEWKQREIDLRFQNAIIKINSDDQSRRKSALEEMKNIMEL 360
            C +EL SL+L PN++LRSSI+EWK R+++L+FQ A+  IN++D SR+  ALE M+ +ME+
Sbjct: 301  CGEELQSLELTPNVNLRSSIDEWKLRDLNLKFQAAVSGINNNDHSRQNKALENMQFLMEI 360

Query: 361  PQYAEKAAKAGLIPKLVEFLKDTRLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQ 420
            P+YA K A+ GL+PKLVEFLK  RL T A LKCLY+LAK+ D HKE +VEAG VRRIVKQ
Sbjct: 361  PRYAVKVAEGGLVPKLVEFLKHKRLDTSATLKCLYYLAKHCDNHKEVMVEAGVVRRIVKQ 420

Query: 421  ICKGETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLS 480
            I +GE  P+AI VL EL+K+ETL EKIG TKDCI ++VSLLHN+NP++SQKA   LQNLS
Sbjct: 421  IYRGEKGPDAIAVLLELSKKETLREKIGETKDCIPLLVSLLHNDNPDVSQKAQSTLQNLS 480

Query: 481  HNTHFAVKMAEAGYFQPFVACFNR----------------------GSQETRALMASALR 518
             +T F +KMAEAG+FQPFVA FN+                      G QE+RALMA+ L 
Sbjct: 481  SSTSFVIKMAEAGHFQPFVARFNQDMPGIIPFYHCSHESLNQHLHAGPQESRALMAADLI 540

Query: 519  NMRLDESSIKTLKDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATI 578
             M+L  +++K L+D +FI ++IQMLSSNSP  KS CLKC+K L+ +  +V+ LL D   I
Sbjct: 541  KMQLKANNMKDLEDGKFIRSLIQMLSSNSPAYKSVCLKCVKKLMVYPHIVQQLLSDSVMI 600

Query: 579  PLLLGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIAN 638
            P LLGLI +V S  HLK EA EILAL+VG CQHP+FE+H GLQELQSEHNV++F+QL+ N
Sbjct: 601  PPLLGLISYVGSGSHLKQEAGEILALLVGACQHPEFEMHQGLQELQSEHNVSLFMQLVFN 660

Query: 639  TERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCIS 698
            ++ ETKIQFLHLL++L  KS   +NLI S+ DAI QLF++LD DQ  V+RW ++L+ CIS
Sbjct: 661  SDPETKIQFLHLLLELSSKSHTAQNLIRSDRDAIVQLFAALDGDQREVKRWVLKLVSCIS 720

Query: 699  EGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSE 758
            + +P+GVPLPPSP KETAINT+ AI TCS D+EERS+AA II QLPKDDI +DE+L KSE
Sbjct: 721  DNHPDGVPLPPSPWKETAINTLVAILTCSLDIEERSIAAAIIGQLPKDDIIIDEILKKSE 780

Query: 759  ALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPS 818
            ALKAI EVIC+ +  + GIR  A  D+SLLE ALAALLHFT+PTKP+LQRQVG+LEVYPS
Sbjct: 781  ALKAIREVICT-EEEYEGIRASANVDSSLLENALAALLHFTEPTKPDLQRQVGQLEVYPS 839

Query: 819  LIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWC 878
            L+R+LS+GSSL+K+R A ALA +SQSTS S   ATL AK+ K  M +  +  LL SMSWC
Sbjct: 840  LVRILSSGSSLSKKRTAIALAHISQSTSSSKPEATLMAKEPKNSMALLHVMNLLPSMSWC 899

Query: 879  CSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLAD 938
            CS+   ++  C+VHG  CSPR+TFCLVKADAVKPLVR L++ E GVAEAALTALETLL D
Sbjct: 900  CSTSTVNEGLCAVHGDGCSPRDTFCLVKADAVKPLVRALSETEDGVAEAALTALETLLTD 959

Query: 939  HSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERIL 998
            H+T SHA A IVD+QGV+ ILQVLEKGSLSAK+KALDLFQ I +HT+I++   Q+SERIL
Sbjct: 960  HNTQSHATAAIVDNQGVVGILQVLEKGSLSAKSKALDLFQKIIEHTQISEPFFQKSERIL 1019

Query: 999  IQLLDDDALKKKVALVLMQMNIIPHQSSYF 1028
            IQLL +D LKKKVALVL QM+IIP QSSYF
Sbjct: 1020 IQLLHEDVLKKKVALVLRQMSIIPEQSSYF 1049

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225425308\|ref\|XP_002268325.1\| PREDICTED: U-box domain-containing protein 43-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296085549\|emb\|CBI29281.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|104294986\|gb\|ABF72002.1\| U-box domain-containing protein [Musa acuminata]	Back alignment and taxonomy information

>gi\|302762895\|ref\|XP_002964869.1\| hypothetical protein SELMODRAFT_167271 [Selaginella moellendorffii] gi\|300167102\|gb\|EFJ33707.1\| hypothetical protein SELMODRAFT_167271 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|302756745\|ref\|XP_002961796.1\| hypothetical protein SELMODRAFT_77566 [Selaginella moellendorffii] gi\|300170455\|gb\|EFJ37056.1\| hypothetical protein SELMODRAFT_77566 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|168041108\|ref\|XP_001773034.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162675581\|gb\|EDQ62074.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|168041621\|ref\|XP_001773289.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162675331\|gb\|EDQ61827.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|168052874\|ref\|XP_001778864.1\| predicted protein [Physcomitrella patens subsp. patens] gi\|162669733\|gb\|EDQ56314.1\| predicted protein [Physcomitrella patens subsp. patens]	Back alignment and taxonomy information

>gi\|302757095\|ref\|XP_002961971.1\| hypothetical protein SELMODRAFT_77081 [Selaginella moellendorffii] gi\|300170630\|gb\|EFJ37231.1\| hypothetical protein SELMODRAFT_77081 [Selaginella moellendorffii]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1028
TAIR\|locus:2030462		801	SAUL1 "senescence-associated E	0.494	0.634	0.257	2.6e-37
TAIR\|locus:2014584		811	PUB43 "plant U-box 43" [Arabid	0.698	0.885	0.249	2.1e-29
TAIR\|locus:2079706		460	PUB9 "plant U-box 9" [Arabidop	0.086	0.193	0.288	2.6e-07
UNIPROTKB\|Q0IMG9		694	SPL11 "E3 ubiquitin-protein li	0.059	0.087	0.344	2.9e-07
TAIR\|locus:2158252		707	AT5G67340 [Arabidopsis thalian	0.179	0.261	0.238	5.8e-07
TAIR\|locus:2017719		612	AT1G23030 [Arabidopsis thalian	0.112	0.189	0.272	6e-07
TAIR\|locus:2045334		829	PUB4 "plant U-box 4" [Arabidop	0.146	0.182	0.242	1.1e-06
TAIR\|locus:2082682		632	PUB14 "plant U-box 14" [Arabid	0.250	0.408	0.224	1.4e-06
TAIR\|locus:2162276		660	PUB15 "Plant U-Box 15" [Arabid	0.307	0.478	0.224	1.6e-06
UNIPROTKB\|Q6EUK7		728	PUB4 "U-box domain-containing	0.268	0.379	0.238	3.9e-06

TAIR\|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 369 (135.0 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
 Identities = 140/543 (25%), Positives = 256/543 (47%)

Query:   259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR---GGK--NCPTCRQEXXXXXXXXX 313
             E+ +CPL  E+M DPV +  G +FER+AI++ F+     G+  +CP   QE         
Sbjct:    25 EAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTSQELTSTDVSAS 84

Query:   314 XXXRSSIEEWKQR----EIDLRFQNAIIKINSDDQSRRKSALEEMKNIMELPQYAEKAAK 369
                R++IEEW+ R    ++D+  Q+  +  N++    +  AL  ++ I    +      +
Sbjct:    85 IALRNTIEEWRSRNDAAKLDIARQSLFLG-NAETDILQ--ALMHVRQICRTIRSNRHGVR 141

Query:   370 -AGLIPKLVEFLKDT--RLSTEAILKCLYFLAKYSDIHKEAIVEAGAVRRIVKQICK--G 424
              + LI  +++ LK T  R+  +A L+ L  + +  D  K  + E   VR +VK +     
Sbjct:   142 NSQLIHMIIDMLKSTSHRVRYKA-LQTLQVVVEGDDESKAIVAEGDTVRTLVKFLSHEPS 200

Query:   425 ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLLHNNNPNLS--QKAHDVLQNLSHN 482
             +    A+ +L EL+K E L EKIG+    + ++V L  +N+ N+S  +KA   L+N+  +
Sbjct:   201 KGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLENMERS 260

Query:   483 THFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRLDESSIKTLKDRQFIHNVIQM 542
                  +MA  G  QP +     GS ET+  MAS L  + L+ + +K L  +    +++ +
Sbjct:   261 EEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLN-NDVKVLVAQTVGSSLVDL 319

Query:   543 LSSNSPVCKSACLKCIKTLIAHSKMVKHXXXXXXXXXXXXXXIQFVRSDPHLKHEAAEIL 602
             + S     + A LK +  + +     K               + +V  + +L     E+ 
Sbjct:   320 MRSGDMPQREAALKALNKISSFEGSAK-VLISKGILPPLIKDLFYVGPN-NLPIRLKEVS 377

Query:   603 ALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKL--CYKS-E 659
             A ++    +  ++       L SE+ V   L LI+NT    + + L +LV L  C K+  
Sbjct:   378 ATILANIVNIGYDFDKAT--LVSENRVENLLHLISNTGPAIQCKLLEVLVGLTSCPKTVP 435

Query:   660 KVRNLIESNNDAITQLFSSLD-SDQPVVRRWAMRLIHCISE--GNPNGVPLPPSPGKETA 716
             KV   I+++  AI  L   ++  +   +R  +++L+H +S          L  + G+  +
Sbjct:   436 KVVYAIKTSG-AIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGTAGQLGS 494

Query:   717 INTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEAL-KAIHEVICSMDGRHN 775
             +  VA I   +P  EE++ AAG++++LP  D+ + + + +  A  K I +V     G   
Sbjct:   495 L--VAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQGDIK 552

Query:   776 GIR 778
             G+R
Sbjct:   553 GMR 555

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0010115 "regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0090359 "negative regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

TAIR\|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2079706 PUB9 "plant U-box 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6EUK7 PUB4 "U-box domain-containing protein 4" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_I000603	hypothetical protein (1049 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1028
smart00504		63	smart00504, Ubox, Modified RING finger domain	7e-16
pfam04564		73	pfam04564, U-box, U-box domain	1e-12
cd00162		45	cd00162, RING, RING-finger (Really Interesting New	4e-08
pfam13445		55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	4e-08
pfam13923		45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-07
pfam00097		40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	1e-06
smart00184		40	smart00184, RING, Ring finger	1e-06
PLN03200		2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-06
pfam11789		57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	2e-06
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-05
pfam13639		46	pfam13639, zf-RING_2, Ring finger domain	4e-04
TIGR00599		397	TIGR00599, rad18, DNA repair protein rad18	4e-04
COG5222		427	COG5222, COG5222, Uncharacterized conserved protei	6e-04

>gnl\|CDD\|128780 smart00504, Ubox, Modified RING finger domain	Back alignment and domain information

 Score = 72.7 bits (179), Expect = 7e-16
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 260 SLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRSS 319
             +CP+  E+M+DPV +  G ++ER AI++     G   P   Q L   DL+PNL+L+S+
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSHG-TDPVTGQPLTHEDLIPNLALKSA 59

Query: 320 IEEW 323
           I+EW
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl\|CDD\|203049 pfam04564, U-box, U-box domain	Back alignment and domain information

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>gnl\|CDD\|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif	Back alignment and domain information

>gnl\|CDD\|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|214546 smart00184, RING, Ring finger	Back alignment and domain information

>gnl\|CDD\|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>gnl\|CDD\|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|222279 pfam13639, zf-RING_2, Ring finger domain	Back alignment and domain information

>gnl\|CDD\|233043 TIGR00599, rad18, DNA repair protein rad18	Back alignment and domain information

>gnl\|CDD\|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1028
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.97
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.93
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.87
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.82
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.74
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.69
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.67
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.61
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.6
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.58
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.56
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	99.56
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.48
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.45
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.44
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.43
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.43
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.42
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.35
PRK09687		280	putative lyase; Provisional	99.32
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.32
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.25
PRK09687		280	putative lyase; Provisional	99.24
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.23
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.23
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.21
KOG4642		284	consensus Chaperone-dependent E3 ubiquitin protein	99.2
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	99.18
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.15
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.14
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.1
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.1
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	99.07
PTZ00429		746	beta-adaptin; Provisional	99.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.0
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.96
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.94
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.93
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.89
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.89
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	98.87
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.83
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.79
PTZ00429		746	beta-adaptin; Provisional	98.77
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.76
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.74
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.69
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.68
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.68
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.67
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.67
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	98.66
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.66
PHA02929		238	N1R/p28-like protein; Provisional	98.64
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.64
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.62
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.59
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.55
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.53
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.51
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.5
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	98.48
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.46
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	98.44
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.41
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.39
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.35
PHA02926		242	zinc finger-like protein; Provisional	98.34
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.32
PF14634		44	zf-RING_5: zinc-RING finger domain	98.3
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.28
KOG4413		524	consensus 26S proteasome regulatory complex, subun	98.27
PF05536		543	Neurochondrin: Neurochondrin	98.25
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.25
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.24
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.23
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.22
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.22
KOG4413		524	consensus 26S proteasome regulatory complex, subun	98.19
TIGR02270		410	conserved hypothetical protein. Members are found	98.18
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.17
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.16
KOG2973		353	consensus Uncharacterized conserved protein [Funct	98.16
KOG3678		832	consensus SARM protein (with sterile alpha and arm	98.13
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	98.1
TIGR02270		410	conserved hypothetical protein. Members are found	98.09
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.08
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.04
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.04
KOG4646		173	consensus Uncharacterized conserved protein, conta	98.0
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.97
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.93
PF05536		543	Neurochondrin: Neurochondrin	97.91
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.87
KOG2660		331	consensus Locus-specific chromosome binding protei	97.86
KOG2973		353	consensus Uncharacterized conserved protein [Funct	97.86
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.82
KOG4646		173	consensus Uncharacterized conserved protein, conta	97.8
KOG3678		832	consensus SARM protein (with sterile alpha and arm	97.8
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.79
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.75
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.74
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	97.72
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.66
KOG0297		391	consensus TNF receptor-associated factor [Signal t	97.64
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.63
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	97.61
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.6
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.57
COG5222		427	Uncharacterized conserved protein, contains RING Z	97.52
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.51
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.5
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.45
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.43
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	97.41
KOG0212		675	consensus Uncharacterized conserved protein [Funct	97.41
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.37
KOG0824		324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.36
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.35
KOG1813		313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.32
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.32
PF05659		147	RPW8: Arabidopsis broad-spectrum mildew resistance	97.31
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.29
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	97.23
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	97.22
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.18
COG5152		259	Uncharacterized conserved protein, contains RING a	97.14
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.12
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.09
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.07
KOG2734		536	consensus Uncharacterized conserved protein [Funct	97.06
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.02
KOG1002		791	consensus Nucleotide excision repair protein RAD16	96.97
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	96.93
KOG2042		943	consensus Ubiquitin fusion degradation protein-2 [	96.86
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.84
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.82
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.81
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.81
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.78
COG5113		929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	96.72
KOG2259		823	consensus Uncharacterized conserved protein [Funct	96.63
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.62
COG5369		743	Uncharacterized conserved protein [Function unknow	96.57
KOG2734		536	consensus Uncharacterized conserved protein [Funct	96.48
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.44
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	96.43
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.43
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.4
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	96.4
PF05004		309	IFRD: Interferon-related developmental regulator (	96.37
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.36
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	96.36
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	96.3
KOG2259		823	consensus Uncharacterized conserved protein [Funct	96.27
KOG4172		62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
KOG3036		293	consensus Protein involved in cell differentiation	96.21
KOG0567		289	consensus HEAT repeat-containing protein [General	96.19
PF04641		260	Rtf2: Rtf2 RING-finger	96.19
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	96.14
KOG3039		303	consensus Uncharacterized conserved protein [Funct	96.09
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.08
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.04
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.01
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.98
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	95.97
KOG4367		699	consensus Predicted Zn-finger protein [Function un	95.95
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.83
KOG0826		357	consensus Predicted E3 ubiquitin ligase involved i	95.76
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	95.75
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	95.67
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	95.66
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.59
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	95.58
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	95.57
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.56
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	95.56
KOG3800		300	consensus Predicted E3 ubiquitin ligase containing	95.53
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.52
KOG0828		636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.48
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	95.36
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.33
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	95.28
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.19
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	95.19
KOG0827		465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.18
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	95.11
COG5369		743	Uncharacterized conserved protein [Function unknow	95.06
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.01
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.93
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	94.81
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	94.77
KOG2114		933	consensus Vacuolar assembly/sorting protein PEP5/V	94.72
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.69
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	94.68
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	94.56
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.55
KOG1788		2799	consensus Uncharacterized conserved protein [Funct	94.39
KOG1039		344	consensus Predicted E3 ubiquitin ligase [Posttrans	94.37
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.29
KOG0289		506	consensus mRNA splicing factor [General function p	94.29
KOG0567		289	consensus HEAT repeat-containing protein [General	94.21
KOG3039		303	consensus Uncharacterized conserved protein [Funct	94.1
COG5194		88	APC11 Component of SCF ubiquitin ligase and anapha	94.09
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	93.99
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.95
KOG0825		1134	consensus PHD Zn-finger protein [General function	93.91
KOG1001		674	consensus Helicase-like transcription factor HLTF/	93.89
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.76
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	93.72
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	93.71
PF02891		50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	93.67
KOG3036		293	consensus Protein involved in cell differentiation	93.66
KOG1493		84	consensus Anaphase-promoting complex (APC), subuni	93.55
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	93.45
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.31
COG5175		480	MOT2 Transcriptional repressor [Transcription]	93.26
PF14447		55	Prok-RING_4: Prokaryotic RING finger family 4	93.14
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.06
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.02
KOG1571		355	consensus Predicted E3 ubiquitin ligase [Posttrans	92.84
COG5219		1525	Uncharacterized conserved protein, contains RING Z	92.71
KOG2817		394	consensus Predicted E3 ubiquitin ligase [Posttrans	92.63
COG5096		757	Vesicle coat complex, various subunits [Intracellu	92.57
KOG4185		296	consensus Predicted E3 ubiquitin ligase [Posttrans	92.14
KOG4275		350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.92
PF10367		109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	91.59
PF05004		309	IFRD: Interferon-related developmental regulator (	91.57
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	91.41
KOG2999		713	consensus Regulator of Rac1, required for phagocyt	91.41
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	91.4
KOG3113		293	consensus Uncharacterized conserved protein [Funct	91.22
PF08045		257	CDC14: Cell division control protein 14, SIN compo	91.09
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.04
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	91.0
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	90.9
COG5096		757	Vesicle coat complex, various subunits [Intracellu	90.79
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	90.76
PF08045		257	CDC14: Cell division control protein 14, SIN compo	90.71
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	90.35
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	90.34
KOG4464		532	consensus Signaling protein RIC-8/synembryn (regul	89.95
KOG2611		698	consensus Neurochondrin/leucine-rich protein (Neur	89.8
KOG0414		1251	consensus Chromosome condensation complex Condensi	89.7
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	89.63
COG5220		314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	89.58
KOG3161		861	consensus Predicted E3 ubiquitin ligase [Posttrans	89.57
KOG2979		262	consensus Protein involved in DNA repair [General	89.28
KOG2999		713	consensus Regulator of Rac1, required for phagocyt	89.26
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	89.06
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	88.52
PF05290		140	Baculo_IE-1: Baculovirus immediate-early protein (	88.37
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.97
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	87.94
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	87.89
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	86.79
PF06371		187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	86.26
KOG0298		1394	consensus DEAD box-containing helicase-like transc	85.95
PF14668		73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	85.93
KOG2034		911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	85.69
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	85.19
PF06371		187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	85.12
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	84.69
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	83.85
KOG3002		299	consensus Zn finger protein [General function pred	83.39
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	83.16
KOG1941		518	consensus Acetylcholine receptor-associated protei	82.66
COG5109		396	Uncharacterized conserved protein, contains RING Z	82.48
KOG4739		233	consensus Uncharacterized protein involved in syna	81.65
PF07814		361	WAPL: Wings apart-like protein regulation of heter	81.57
KOG2062		929	consensus 26S proteasome regulatory complex, subun	81.56
PF14668		73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	81.08
KOG1812		384	consensus Predicted E3 ubiquitin ligase [Posttrans	80.84
KOG2930		114	consensus SCF ubiquitin ligase, Rbx1 component [Po	80.71
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	80.54
KOG4464		532	consensus Signaling protein RIC-8/synembryn (regul	80.53
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	80.51
PRK14707		2710	hypothetical protein; Provisional	80.47
PF06025		379	DUF913: Domain of Unknown Function (DUF913); Inter	80.43
COG5209		315	RCD1 Uncharacterized protein involved in cell diff	80.26

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=5.3e-56  Score=559.18  Aligned_cols=658  Identities=18%  Similarity=0.222  Sum_probs=508.2

Q ss_pred             hHHHHHhhhcCC--ChHHHHHHHHHHHHhc-CChhhhHHHHh-hccHHHHHHHHhc-CHHHHHHHHHHHHHHhcccHHHH
Q 001690          331 RFQNAIIKINSD--DQSRRKSALEEMKNIM-ELPQYAEKAAK-AGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHK  405 (1028)
Q Consensus       331 ~i~~~~~~L~s~--~~~~~~~al~~L~~l~-~~~~~r~~i~~-~g~ip~Lv~lL~s-~~~~~~~A~~~L~~Ls~~~~~~k  405 (1028)
                      .+..++++|.++  +.+.+..++..|+.++ .++++|..+.+ .|++|.|+.+|++ +..+|++|+.+|.+++.++ ++|
T Consensus        14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e-~nk   92 (2102)
T PLN03200         14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLR   92 (2102)
T ss_pred             HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHH
Confidence            456677788765  7788999999999999 99999999986 8999999999999 9999999999999999997 899


Q ss_pred             HHHHHhchhHHHHHhhccC--CchhHHHHHHHHhhhc---hhhhhhhhcccchHHHHHHHhhcCC---hhhHHHHHHHHh
Q 001690          406 EAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKR---ETLGEKIGNTKDCITIMVSLLHNNN---PNLSQKAHDVLQ  477 (1028)
Q Consensus       406 ~~i~~~g~i~~lv~~L~~~--e~~~~A~~~L~~Ls~~---~~~~~~i~~~~g~I~~Lv~lL~~~~---~~~~~~a~~~L~  477 (1028)
                      ..|+..|+|++++.+|+++  +.+++|+.+|++|+.+   +.++..|+...|+||.|+.++++++   ..++..|+.+|+
T Consensus        93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~  172 (2102)
T PLN03200         93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR  172 (2102)
T ss_pred             HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence            9999999999999999998  9999999999999886   5566676656899999999999874   235567789999


Q ss_pred             ccccCchhHHH-HHHcCCchhHHHhhcCCCHHHHHHHHHHHHHhhc-CcchHHHHhhCCcHHHHHHHhcCC-CHHHHHHH
Q 001690          478 NLSHNTHFAVK-MAEAGYFQPFVACFNRGSQETRALMASALRNMRL-DESSIKTLKDRQFIHNVIQMLSSN-SPVCKSAC  554 (1028)
Q Consensus       478 nL~~~~~n~~~-i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A  554 (1028)
                      ||+.+++|+.. ++++|+||.|+.+|+++++..|.+|+++|.+++. +++.+..+++.|+||+|+++|+++ ++.+|++|
T Consensus       173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~A  252 (2102)
T PLN03200        173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEA  252 (2102)
T ss_pred             HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHH
Confidence            99999999865 5799999999999999999999999999998865 477999999999999999999875 46899999


Q ss_pred             HHHHHHHhcCC-HhHHHHHhCCCcHHHHHHHHhccCC-------ChhHHHHHHHHHHHHHcCCCC-----------C---
Q 001690          555 LKCIKTLIAHS-KMVKHLLLDPATIPLLLGLIQFVRS-------DPHLKHEAAEILALMVGGCQH-----------P---  612 (1028)
Q Consensus       555 ~~aL~nL~~~~-~~~~~lv~~~g~v~~L~~lL~~~~~-------~~~l~~~a~~~L~nL~~~~~~-----------~---  612 (1028)
                      +++|+|||.+. +++..+++. |++|+|++++..++.       ...++++|+|+|.|+|.+...           .   
T Consensus       253 A~AL~nLAs~s~e~r~~Iv~a-GgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~  331 (2102)
T PLN03200        253 AGALEALSSQSKEAKQAIADA-GGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSP  331 (2102)
T ss_pred             HHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchH
Confidence            99999999875 667777776 999999999985431       245789999999999985211           0   


Q ss_pred             c-----------------------cccc----------------c-------------------cchhhcccccHHHHHH
Q 001690          613 Q-----------------------FELH----------------H-------------------GLQELQSEHNVNVFLQ  634 (1028)
Q Consensus       613 ~-----------------------~~~~----------------~-------------------~~~~l~~~g~v~~Lv~  634 (1028)
                      .                       ....                +                   ..+.+.+.++++.|++
T Consensus       332 ~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~  411 (2102)
T PLN03200        332 APIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVG  411 (2102)
T ss_pred             HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhh
Confidence            0                       0000                0                   0112345677888999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhhcCCHHHHHHHHhhhchHHHHHhhhcCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 001690          635 LIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKE  714 (1028)
Q Consensus       635 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~v~~Lv~Ll~~~~~~v~~~A~~~L~~Ls~~~~~~~i~~~~~~~~  714 (1028)
                      ||..++.+.|..++++|.+||.++.+.+..|.. .|+++.|+++|.+++..+++.|+++|++|+. .........  .+.
T Consensus       412 LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~-~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~-~ndenr~aI--iea  487 (2102)
T PLN03200        412 LITMATADVQEELIRALSSLCCGKGGLWEALGG-REGVQLLISLLGLSSEQQQEYAVALLAILTD-EVDESKWAI--TAA  487 (2102)
T ss_pred             hhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHHHH--HHC
Confidence            999999999999999999999998888888888 8999999999999999999999999999994 222222222  467


Q ss_pred             ccHHHHHHhccCCCCHHHHHHHHHHHhcCCCCChHHHHHHHhccchHHHHHHHHhhcCCCCCCCCCCcchhhHHHHHHHH
Q 001690          715 TAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCKSEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAA  794 (1028)
Q Consensus       715 ~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~~~~~~~~~~~~~~~~e~~~~a  794 (1028)
                      |++++|+++|.+++. ..+..|+++|+|++.++.+.+..+.+.|++++|+++|.+.             ....++.++++
T Consensus       488 GaIP~LV~LL~s~~~-~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-------------d~~~q~~Aa~A  553 (2102)
T PLN03200        488 GGIPPLVQLLETGSQ-KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-------------GPKGQEIAAKT  553 (2102)
T ss_pred             CCHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-------------CHHHHHHHHHH
Confidence            999999999998764 8899999999999998778877788999999999999862             24556667777


Q ss_pred             HHHhcCCCChH------------------------------------HHHHHhhcCCHHHHHHHhhcCCHHHHHHHHHHH
Q 001690          795 LLHFTDPTKPE------------------------------------LQRQVGKLEVYPSLIRVLSTGSSLAKQRAASAL  838 (1028)
Q Consensus       795 L~~l~~~~~~~------------------------------------~~~~i~~~~~i~~Lv~lL~s~~~~vk~~Aa~aL  838 (1028)
                      |.+++...+.+                                    .+..+...|++|.|++||+++++.+|+.|+|+|
T Consensus       554 L~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL  633 (2102)
T PLN03200        554 LTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL  633 (2102)
T ss_pred             HHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            77664211111                                    011112356677777777777777777777655


Q ss_pred             ---Hhhhhcccc-cccccccccccccccCchhhHhhhhhhcccccCCCCCCCCCCccccc--cCCcccchhhhhcCcchh
Q 001690          839 ---ADLSQSTSV-SVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGA--ACSPRETFCLVKADAVKP  912 (1028)
Q Consensus       839 ---~~ls~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~--~~~~~~~~~l~~~gai~~  912 (1028)
                         +.-.....+ .+..           -+.++++.+|...-.    ....+....+-.-  .....+...++++|+|+|
T Consensus       634 snL~a~~~d~~~avv~a-----------gaIpPLV~LLss~~~----~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~p  698 (2102)
T PLN03200        634 ADIFSSRQDLCESLATD-----------EIINPCIKLLTNNTE----AVATQSARALAALSRSIKENRKVSYAAEDAIKP  698 (2102)
T ss_pred             HHHhcCChHHHHHHHHc-----------CCHHHHHHHHhcCCh----HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHH
Confidence               122111111 0000           011122222222100    0000000000000  001123346789999999


Q ss_pred             HHhhhcCCCccHHHHHHHHHHHhhhcccchhhHHHHHHhccchHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhhhhhc
Q 001690          913 LVRNLNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQ  992 (1028)
Q Consensus       913 Lv~lL~~~d~~v~~~A~~aL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~  992 (1028)
                      |+++|++.|.++++.|+.||++|+.+++.    ...+...|+|++|+++++.|++..|+.|.|+|.++++.....+.+..
T Consensus       699 L~~LL~~~d~~v~e~Al~ALanLl~~~e~----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~  774 (2102)
T PLN03200        699 LIKLAKSSSIEVAEQAVCALANLLSDPEV----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD  774 (2102)
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHcCchH----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            99999999999999999999999998753    45667889999999999999999999999999999999988876633


Q ss_pred             cc-----chHHHhhccc----cchHHHHHHHHHHhccCCCCCCC
Q 001690          993 RS-----ERILIQLLDD----DALKKKVALVLMQMNIIPHQSSY 1027 (1028)
Q Consensus       993 ~~-----~~~Lv~~l~~----~~~~~~aa~~L~~l~~~~~~s~~ 1027 (1028)
                      ..     ..||+++|.+    ......|..+|+.|.+.-+.+.|
T Consensus       775 ~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~  818 (2102)
T PLN03200        775 SVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF  818 (2102)
T ss_pred             HHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence            33     2599999999    33344599999999997666554

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF04641 Rtf2: Rtf2 RING-finger	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5175 MOT2 Transcriptional repressor [Transcription]	Back alignment and domain information

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]	Back alignment and domain information

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5	Back alignment and domain information

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG3002 consensus Zn finger protein [General function prediction only]	Back alignment and domain information

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]	Back alignment and domain information

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5	Back alignment and domain information

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing	Back alignment and domain information

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1028
2ecw_A		85	Solution Structure Of The Zinc Finger, C3hc4 Type (		5e-05
1t1h_A		78	Nmr Solution Structure Of The U Box Domain From Atp		1e-04

>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Tripartite Motif Protein 30 Length = 85

Back alignment and structure

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQR-----GGKNCPTCR 302
           E + CP+C EL+++PV+  C HSF R  I  +++      G  NCP CR
Sbjct: 18  EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66

PyMOL of 2ecw

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1028
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-27
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-25
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-25
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-22
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-09
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-08
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-27
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-11
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	9e-27
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-25
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-23
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	2e-09
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	1e-25
2f42_A		179	STIP1 homology and U-box containing protein 1; cha	6e-24
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	2e-19
2kr4_A		85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	4e-19
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	5e-18
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-18
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-16
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-13
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-11
2yu4_A		94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	6e-18
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	4e-17
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	8e-14
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	5e-17
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	4e-14
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	9e-04
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	2e-16
3ztg_A		92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	6e-16
3htk_C		267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	9e-16
3m62_A		968	Ubiquitin conjugation factor E4; armadillo-like re	2e-15
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	3e-15
1z6u_A		150	NP95-like ring finger protein isoform B; structura	5e-15
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	6e-15
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	4e-14
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	8e-14
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-13
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-13
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	5e-13
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	6e-13
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	7e-13
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	4e-11
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	5e-05
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-04
2bay_A		61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	1e-12
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-12
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	5e-12
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	8e-12
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	9e-12
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	1e-11
4epo_C		149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-11
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	3e-11
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-11
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	6e-11
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	6e-11
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	9e-11
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	1e-10
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	1e-10
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-10
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-10
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-07
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-06
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	2e-10
3nmz_A		458	APC variant protein; protein-protein complex, arma	2e-09
3nmz_A		458	APC variant protein; protein-protein complex, arma	3e-09
3nmz_A		458	APC variant protein; protein-protein complex, arma	3e-07
3nmz_A		458	APC variant protein; protein-protein complex, arma	3e-06
3nmz_A		458	APC variant protein; protein-protein complex, arma	4e-05
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-09
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	4e-09
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	9e-09
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	6e-08
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-06
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	7e-06
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	1e-08
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	2e-08
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	3e-08
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-08
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-08
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-07
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-06
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-07
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-04
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-05
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	5e-05
3nw0_A		238	Non-structural maintenance of chromosomes element	8e-05
2cs3_A		93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	1e-04
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	2e-04
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	3e-04
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	3e-04
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	4e-04
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	5e-04

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

 Score =  117 bits (294), Expect = 4e-27
 Identities = 73/619 (11%), Positives = 181/619 (29%), Gaps = 74/619 (11%)

Query: 406  EAIVEAGAVRRIVKQICKG--ETMPEAIEVLSELTKRETLGEKIGNTKDCITIMVSLL-H 462
            +A +   A+  + K +       + +A  ++ +L+K+E     I  +   ++ +V  + +
Sbjct: 8    DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 67

Query: 463  NNNPNLSQKAHDVLQNLSHNTHFAVKMAEAGYFQPFVACFNRGSQETRALMASALRNMRL 522
             N+   ++     L NLSH+    + + ++G     V               + L N+ L
Sbjct: 68   TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127

Query: 523  DESSIKTL-KDRQFIHNVIQMLSSNSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLL 581
             +   K   +    +  ++ +L+  +    +    C++ L   ++  K ++L       L
Sbjct: 128  HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187

Query: 582  LGLIQFVRSDPHLKHEAAEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTER 641
            + +++   +   L    + +L ++     +    +  G         +      + +  +
Sbjct: 188  VNIMR-TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG--------MQALGLHLTDPSQ 238

Query: 642  ETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSSLDSDQPVVRRWAMRLIHCISEGN 701
                  L  L  L   + K           +  L   L SD   V   A  ++  ++  N
Sbjct: 239  RLVQNCLWTLRNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294

Query: 702  PNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQL---PKDDIYVDEVLCKSE 758
                 +    G   A+  V  +       +    A   +  L    ++       +    
Sbjct: 295  YKNKMMVCQVGGIEAL--VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 759  ALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPS 818
             L  + +++                   L++  +  + +      P     + +    P 
Sbjct: 353  GLPVVVKLLHPPSHWP------------LIKATVGLIRNLAL--CPANHAPLREQGAIPR 398

Query: 819  LIRVLSTGSSLAKQRAASALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWC 878
            L+++L       ++R +           V +                             
Sbjct: 399  LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA------------------- 439

Query: 879  CSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRNLNDMESGVAEAALTALETLLAD 938
                        +H  A        +   + +   V+ L      +   A   L  L  D
Sbjct: 440  ------------LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487

Query: 939  HSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMIQKHTRITDTLLQRSERIL 998
                  A   I        + ++L   +    T A  +   + +  +  D   + S  + 
Sbjct: 488  ----KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED-KPQDYKKRLSVELT 542

Query: 999  IQLL--DDDALKKKVALVL 1015
              L   +  A  +   L L
Sbjct: 543  SSLFRTEPMAWNETADLGL 561

PyMOL of 2z6h

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78	Back alignment and structure

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281	Back alignment and structure

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98	Back alignment and structure

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92	Back alignment and structure

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267	Back alignment and structure

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85	Back alignment and structure

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65	Back alignment and structure

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238	Back alignment and structure

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Length = 93	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1028
d1t1ha_		78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	3e-17
d1rmda2		86	g.44.1.1 (A:1-86) V(D)J recombination activating p	9e-15
d1jm7a_		103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-14
d2c2la2		80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	3e-12
d1fbva4		79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-12
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-11
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-07
d1bora_		56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-10
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-09
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-04
d1wgma_		98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	4e-08
d1g25a_		65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	8e-08
d1chca_		68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-07
d1jm7b_		97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-07
d2baya1		56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	3e-07
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-05
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-05
d1ur6b_		52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-06
d1iyma_		55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	4e-06
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-05

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.1 bits (184), Expect = 3e-17
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 259 ESLVCPLCNELMEDPVAIVCGHSFERKAIQEHFQRGGKNCPTCRQELLSLDLMPNLSLRS 318
           E   CP+  ELM+DPV +  G ++ER +IQ+    G K CP  ++ LL   L PN  L+S
Sbjct: 7   EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66

Query: 319 SIEEWKQR 326
            I  W + 
Sbjct: 67  LIALWCES 74

PyMOL of d1t1ha_

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1028
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.91
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.9
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.72
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.71
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.7
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	99.68
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.65
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.64
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.62
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.58
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.39
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.37
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.37
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.37
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	99.25
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.24
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.23
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.18
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.1
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.08
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.99
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.68
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	98.67
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	98.55
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.49
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	98.44
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.3
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	98.22
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.2
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.95
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.7
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.53
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.43
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.21
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	94.62
d1upka_		330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.76
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	91.66

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=342.52  Aligned_cols=506  Identities=14%  Similarity=0.090  Sum_probs=390.5

Q ss_pred             HHHHCCHHHHHHHHHC-CHHHHHHHHHHHHHHHCCCHHHHHHHHH-HCHHHHHHHHHCCC---CCHHHHHHHHHHHHHCH
Q ss_conf             7742559899999714-9898999999999981056787999998-20068999863058---76468999999862101
Q 001690          367 AAKAGLIPKLVEFLKD-TRLSTEAILKCLYFLAKYSDIHKEAIVE-AGAVRRIVKQICKG---ETMPEAIEVLSELTKRE  441 (1028)
Q Consensus       367 i~~~g~ip~Lv~lL~s-~~~~r~~A~~~L~~Ls~~~~~~k~~i~~-~g~i~~lv~~L~~~---e~~~~A~~~L~~Ls~~~  441 (1028)
                      ....+++|.|+++|++ +..++..|+.++.+++.++ ..+..+.. .|.++.++..|.+.   +.++.++.+|.+++.++
T Consensus        13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~   91 (529)
T d1jdha_          13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             899979999999872999999999999999998455-7789998713399999999847999999999999999995891


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHH-HHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             34465404343299999976218934699999998411159434-99999809836678742279999999999999980
Q 001690          442 TLGEKIGNTKDCITIMVSLLHNNNPNLSQKAHDVLQNLSHNTHF-AVKMAEAGYFQPFVACFNRGSQETRALMASALRNM  520 (1028)
Q Consensus       442 ~~~~~i~~~~g~I~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~n-~~~i~~~G~i~~Li~lL~~~~~~~~~~a~~~L~~L  520 (1028)
                      +++..+.+ .|++|.|+.+|++++++++..|+++|.|++.+.++ +..+.+.|++|+|+.+|++++++++..++.+|.++
T Consensus        92 ~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l  170 (529)
T d1jdha_          92 EGLLAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             66999998-79899999985797989999999999986513201136787658814899988705768888889999887


Q ss_pred             HC-CCCHHHHHHHCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             14-91018998507957999998417-99888999999999971088759998728996798999983118981479999
Q 001690          521 RL-DESSIKTLKDRQFIHNVIQMLSS-NSPVCKSACLKCIKTLIAHSKMVKHLLLDPATIPLLLGLIQFVRSDPHLKHEA  598 (1028)
Q Consensus       521 ~~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~~~~~lv~~~g~i~~L~~lL~~~~~~~~l~~~a  598 (1028)
                      +. +++.+..+.+.|++++|+.++++ .....+..+++++.+++.+++++..+++. |++++|+.++..++  ..++..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~-g~~~~L~~ll~~~~--~~~~~~a  247 (529)
T d1jdha_         171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPS--QRLVQNC  247 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHT-THHHHHHTTTTSSC--HHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHCCCC--HHHHHHH
T ss_conf             63004788888760563689999986104899999999875110133233045654-33346999862540--1555301


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHH
Q ss_conf             99999998289997531010001122325299999872179989999999999995119889999998210529999963
Q 001690          599 AEILALMVGGCQHPQFELHHGLQELQSEHNVNVFLQLIANTERETKIQFLHLLVKLCYKSEKVRNLIESNNDAITQLFSS  678 (1028)
Q Consensus       599 ~~~L~~l~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~i~~~~g~i~~Lv~L  678 (1028)
                      .+++.+++.....          .....++++.|+.++.++++.++..++++|.+++.++...+..+.+ .++++.|+.+
T Consensus       248 ~~~l~~ls~~~~~----------~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~Li~~  316 (529)
T d1jdha_         248 LWTLRNLSDAATK----------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRT  316 (529)
T ss_dssp             HHHHHHHHTTCTT----------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH-TTHHHHHHHH
T ss_pred             HHHHHHCCCCCCC----------HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHH
T ss_conf             5677750432110----------2566401014454124542889999999887501220378888887-5007899999


Q ss_pred             HC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             23--8995589999999998159999998889999996637879874048998989999999984099999577899971
Q 001690          679 LD--SDQPVVRRWAMRLIHCISEGNPNGVPLPPSPGKETAINTVAAIFTCSPDVEERSLAAGIISQLPKDDIYVDEVLCK  756 (1028)
Q Consensus       679 l~--~~~~~v~~~A~~~L~~Ls~~~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~a~~~L~nL~~~~~~~~~~l~~  756 (1028)
                      +.  ++.++++..|+++|++++......+.........++++.|+.++..++.......+++++.|++. +......+.+
T Consensus       317 l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~  395 (529)
T d1jdha_         317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLRE  395 (529)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHH
T ss_conf             984001113788999885002200000003566677645612478987153127899999998750000-3566666653


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             04369999999711378888778876300579999999977159999588999860588789999851298899999999
Q 001690          757 SEALKAIHEVICSMDGRHNGIRTPACQDASLLEIALAALLHFTDPTKPELQRQVGKLEVYPSLIRVLSTGSSLAKQRAAS  836 (1028)
Q Consensus       757 ~g~i~~Li~lL~~~~~~~~~~~~~~~~~~~~~e~~~~aL~~l~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vk~~Aa~  836 (1028)
                      .|+++.++.++.+..             .........+.....          ..+.  +         ..+++...++.
T Consensus       396 ~g~i~~L~~lL~~~~-------------~~~~~~~~~~~~~~~----------~~~~--~---------~~~~~~~~~~~  441 (529)
T d1jdha_         396 QGAIPRLVQLLVRAH-------------QDTQRRTSMGGTQQQ----------FVEG--V---------RMEEIVEGCTG  441 (529)
T ss_dssp             TTHHHHHHHHHHHHH-------------HHHC---------------------CBTT--B---------CHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCC-------------HHHHHHHHHHHHHHH----------HHCC--C---------CHHHHHHHHHH
T ss_conf             265799999986678-------------899999986034677----------6412--1---------31999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf             98732000444422211222211234851357663210255558889898877555665784431366414760468861
Q 001690          837 ALADLSQSTSVSVSNATLTAKQTKTLMPMFDMTKLLLSMSWCCSSWGDHQSSCSVHGAACSPRETFCLVKADAVKPLVRN  916 (1028)
Q Consensus       837 aL~~ls~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~h~~~~~~~~~~~l~~~gai~~Lv~l  916 (1028)
                      +|.+++....+                                                     ...+.+.|++++|+++
T Consensus       442 al~~la~~~~~-----------------------------------------------------r~~~~~~~~i~~Lv~l  468 (529)
T d1jdha_         442 ALHILARDVHN-----------------------------------------------------RIVIRGLNTIPLFVQL  468 (529)
T ss_dssp             HHHHHTTSHHH-----------------------------------------------------HHHHHHTTCHHHHHHG
T ss_pred             HHHHHCCCHHH-----------------------------------------------------HHHHHHCCCHHHHHHH
T ss_conf             99998449888-----------------------------------------------------9999978889999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             0478820799999999986204200456789987214549999997229945888999999999
Q 001690          917 LNDMESGVAEAALTALETLLADHSTLSHAIAVIVDSQGVLAILQVLEKGSLSAKTKALDLFQMI  980 (1028)
Q Consensus       917 L~~~d~~v~~~A~~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~~~~~A~~~l~~i  980 (1028)
                      |.+.++.++..|+.+|++|..+++    +...+.+.||+++|++++.++++.+++.|..+|.++
T Consensus       469 L~~~~~~v~~~a~~aL~~L~~~~~----~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         469 LYSPIENIQRVAAGVLCELAQDKE----AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSHH----HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHCCHH----HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             679998999999999999865946----699999888899999985799999999999999974

PyMOL of d1jdha_

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure