Citrus Sinensis ID: 001701

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020----
MDDTKPSVTASNNSESNAGDNDATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
cccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHEEEEEEEEEcccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEEcccccccccccccccccEEEEcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEcccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHcccccccccHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHccccccHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccEEEEEEEccccccccccccccccHEEEEcHEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEccccccEEEEccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccccccccc
mddtkpsvtasnnsesnagdndateARLTDLCknglsvdeNTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSekngenlqqgsndnefnLCHILRVMKLNIVDFFKELPQFlvksgpilsniygadweNRLEAKELQANFVHLSILSKSYKRIYRefflpsdangdkqsaaastsgyisdyHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHvpvrfrnfnihdssrfvkksnkgvDLIASLCSIYDTSEDDLRKIMEKTNTLIADILkkkpceasecksenlenidtdGLIYFEnlmddsslsssLNILEKDYdnatrnkgeldervfineddsllgsgslsggavnitgakrkfdslaspvktitsplsphrssashpngiaggatskmvvTPVSTAMTTAKWLRTvicplpskpsaELERFLKSCDKDVTTDVMRRAHIILEaifpssglgercvtgslqganlMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVlertgitafDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRlglladpmpsldAIAThinfssgglspvhslhkhetspgqngdirspkrpctdyRSVLVernnftspvkdrllglnnlkskplppplqsafasptrpnpggggetcaetGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNyrkqpqckpqvfRSVFVDWASarqsgrseqdHVDIITFYNKIFVPAVKPLLvelgpagtamktnrvsevnhnndgpcpgspkvsvfpalpdmspkkvsathnvyvsplrtskmDALIShssksyyacvgesthayqspskdltdinhrlnsnrrvrgtlnfddvdvdVGLVSDSMVANSLylqngsaaastcavlkpeqpdp
mddtkpsvtasnnsesnagdndateARLTDLCknglsvdeNTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEKNgenlqqgsndnEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFlpsdangdkQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNfnihdssrfvkksnkgvdLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKkpceasecksenlenidTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTItsplsphrssashpngiaggatsKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILeaifpssglgeRCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFirheeslprelRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHetspgqngdirspkrPCTDYRSVLvernnftspvkdRLLGLNNLKSKPLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYrkqpqckpqVFRSVFVDWASARqsgrseqdhVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESThayqspskdlTDINHRLnsnrrvrgtlnfdDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
MDDTKPSVTASNNSESNAGDNDATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMddsslssslNILEKDYDNATRNKGELDERVFINEDDsllgsgslsggAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRllglnnlkskplppplQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFddvdvdvglvsdsmvANSLYLQNGSAAASTCAVLKPEQPDP
***************************LTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLS*************NEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLP**************SGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLM*****************************VFI************************************************************MVVTPVSTAMTTAKWLRTVICPL**********************VMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEE********HLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINF***********************************SVLVE********************************************TCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASAR*******DHVDIITFYNKIFVPAVKPLLVELGPA*********************************************VYV*********ALISH*SKSYYACVGES********************NRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAA*TC**********
****************************TDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRR****************EFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIY********EAKELQANFVHLSILSKSYKRIYREFF*********************DYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNI*************VDLIASLCSIYDT******KIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSL*********************************************************TPVSTAMTTAKWLR************ELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGL***************DNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNS***************************************************************************************************************************GINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVF********************TFYNKIFVPAVKPLLV******************************************************************************************************************************************************
**********************ATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDA***********SGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITS************NGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHS***************SPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFA***********ETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
**********************ATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEK**********DNEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPS************TSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDD************************************************IAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLS************MPS*D**********************************************************************************************AETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWA***********HVDIITFYNKIFVPAVKPLLVELGPA***********************P*VSVFP*LPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDV**************************************
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MDDTKPSVTASNNSESNAGDNDATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSxxxxxxxxxxxxxxxxxxxxxVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLKPEQPDP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1024 2.2.26 [Sep-21-2011]
B9SVG91020 Retinoblastoma-related pr N/A no 0.994 0.998 0.817 0.0
B9GLX81035 Retinoblastoma-related pr yes no 0.994 0.983 0.776 0.0
A7P5141007 Retinoblastoma-related pr yes no 0.980 0.997 0.784 0.0
Q2ABE51025 Retinoblastoma-related pr N/A no 0.992 0.991 0.757 0.0
A9UL141025 Retinoblastoma-related pr N/A no 0.984 0.983 0.742 0.0
Q9SLZ41026 Retinoblastoma-related pr N/A no 0.986 0.984 0.745 0.0
Q9LKZ31013 Retinoblastoma-related pr yes no 0.958 0.968 0.731 0.0
Q66WV01003 Retinoblastoma-related pr N/A no 0.968 0.989 0.737 0.0
B1ABR61005 Retinoblastoma-related pr N/A no 0.969 0.988 0.709 0.0
B1ABS01008 Retinoblastoma-related pr N/A no 0.963 0.979 0.705 0.0
>sp|B9SVG9|RBR_RICCO Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1 Back     alignment and function desciption
 Score = 1708 bits (4424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 839/1026 (81%), Positives = 913/1026 (88%), Gaps = 8/1026 (0%)

Query: 1    MDDTKPSVTASNN-SESNAGDNDATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLA 59
            M+D KPS  ++ N      G+ND  E R TD CK GLSV E+ Y+E IKLF+ TKHLLLA
Sbjct: 1    MEDMKPSTASTKNLHHDGVGENDTIEVRFTDFCKIGLSVSEDAYEEAIKLFKGTKHLLLA 60

Query: 60   NISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVD 119
            NISAIGNGMPEEAERFWFAFV Y V+RLSEK  +N+QQ  +DN   LC ILR  KLNIVD
Sbjct: 61   NISAIGNGMPEEAERFWFAFVSYSVKRLSEKIRDNMQQRPDDNGLTLCQILRRAKLNIVD 120

Query: 120  FFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDA 179
            FFKELPQ++VK+GPILS +YG DWENRLEAKELQANFVHLSILS+ YKR YRE FL SDA
Sbjct: 121  FFKELPQYVVKAGPILSTMYGVDWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDA 180

Query: 180  NGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPV 239
            N DKQSA A    Y+SDYHRFGWLLFLALR+HAFSRFKDLVTCTNGLVS+LAILIIHVPV
Sbjct: 181  NVDKQSATA----YMSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAILIIHVPV 236

Query: 240  RFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEA 299
            RFRNFN++DS RFVKK +KGVDL+ASLC+ YDTSED+LRK MEKTN LIADILKKKP  A
Sbjct: 237  RFRNFNLNDSQRFVKKGDKGVDLLASLCNKYDTSEDELRKTMEKTNNLIADILKKKPHMA 296

Query: 300  SECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDS 359
            SE K+ENL+NI+TDGLIY+E+LM++SSL SSL+ILEKDY++A R KGELDERVFINE+DS
Sbjct: 297  SEYKNENLDNINTDGLIYYEDLMEESSLRSSLDILEKDYEDAIRCKGELDERVFINEEDS 356

Query: 360  LLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 419
            LLGSGSLSGGA+++TG KRKFD ++SP KTITSPLSPHRS ASH NGI G   S+M  TP
Sbjct: 357  LLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPASHTNGILGSTNSRMAATP 416

Query: 420  VSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGE 479
            VSTAMTTAKWLRTVI PLPSKPS +LERFL SCD+DVT DV+RRAHIILEAIFPS+ LGE
Sbjct: 417  VSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTNDVIRRAHIILEAIFPSNALGE 476

Query: 480  RCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHR 539
            RCVTGSLQ  NLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQ+LHA NLTSLLTNERFHR
Sbjct: 477  RCVTGSLQSTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHR 536

Query: 540  CMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSL 599
            CMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSL
Sbjct: 537  CMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSL 596

Query: 600  EERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSP 659
            EERLLESMVWEKGSSMYNSLTVARP LSAEINRLGLLA+PMPSLDAIA HINFSSGGL P
Sbjct: 597  EERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAVHINFSSGGLPP 656

Query: 660  VHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPL 719
            + S+ KHE SPGQNGDIRSPKRPCTDYRSVLVERN+FTSPVKDRLL   NLKSK  PPPL
Sbjct: 657  LSSVSKHEISPGQNGDIRSPKRPCTDYRSVLVERNSFTSPVKDRLLAFTNLKSKLPPPPL 716

Query: 720  QSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQ-IRESVYCL 778
            QSAFASPTRPNPGGGGETCAETGINIFF KINKLAAVRIN MVERLQ SQQ IRE+VY L
Sbjct: 717  QSAFASPTRPNPGGGGETCAETGINIFFSKINKLAAVRINGMVERLQQSQQHIRENVYRL 776

Query: 779  FQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVF 838
            FQQ+L+Q+TSLFFNRHIDQIILCCFYGVAKIS++NLTFREIIYNYRKQPQCKPQVFRSVF
Sbjct: 777  FQQVLSQQTSLFFNRHIDQIILCCFYGVAKISKVNLTFREIIYNYRKQPQCKPQVFRSVF 836

Query: 839  VDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGP 898
            VDW+SAR +GR+ QDHVDIITFYN+IF+PA KPLLVE+G AG  +K ++V EVN+N DG 
Sbjct: 837  VDWSSARHNGRTGQDHVDIITFYNEIFIPAAKPLLVEVGSAGITVKGSQVPEVNNNKDGQ 896

Query: 899  CPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQ 958
            CP SPKVS FP+LPDMSPKKVSA HNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQ
Sbjct: 897  CPASPKVSPFPSLPDMSPKKVSAAHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQ 956

Query: 959  SPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLK 1018
            SPSKDLT IN+RLN NR +RG+LNFD  DVDVGLVSDSMVA SLYLQNGS A+++ A LK
Sbjct: 957  SPSKDLTAINNRLNGNRNIRGSLNFD--DVDVGLVSDSMVAKSLYLQNGSCASTSGAPLK 1014

Query: 1019 PEQPDP 1024
             EQPDP
Sbjct: 1015 TEQPDP 1020
Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication.
Ricinus communis (taxid: 3988)
>sp|B9GLX8|RBR_POPTR Retinoblastoma-related protein OS=Populus trichocarpa GN=RBL901 PE=2 SV=1 Back     alignment and function description
>sp|A7P514|RBR_VITVI Retinoblastoma-related protein OS=Vitis vinifera GN=RBR PE=2 SV=1 Back     alignment and function description
>sp|Q2ABE5|RBR_CAMSI Retinoblastoma-related protein OS=Camellia sinensis GN=pRB PE=2 SV=1 Back     alignment and function description
>sp|A9UL14|RBR_MEDSA Retinoblastoma-related protein OS=Medicago sativa GN=RBR PE=2 SV=1 Back     alignment and function description
>sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1 OS=Pisum sativum GN=RBR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LKZ3|RBR1_ARATH Retinoblastoma-related protein 1 OS=Arabidopsis thaliana GN=RBR1 PE=1 SV=1 Back     alignment and function description
>sp|Q66WV0|RBR1_NICBE Retinoblastoma-related protein 1 OS=Nicotiana benthamiana GN=RBR1 PE=2 SV=1 Back     alignment and function description
>sp|B1ABR6|RBR_HIEPI Retinoblastoma-related protein OS=Hieracium piloselloides GN=RBR PE=2 SV=1 Back     alignment and function description
>sp|B1ABS0|RBR_HIEPL Retinoblastoma-related protein OS=Hieracium pilosella GN=RBR PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1024
2555782411020 conserved hypothetical protein [Ricinus 0.994 0.998 0.817 0.0
4494494531024 PREDICTED: retinoblastoma-related protei 0.995 0.995 0.769 0.0
449487265 1125 PREDICTED: retinoblastoma-related protei 0.995 0.905 0.768 0.0
2240532361035 hypothetical protein POPTRDRAFT_547794 [ 0.994 0.983 0.776 0.0
73810601035 retinoblastoma-related protein 1 [Populu 0.994 0.983 0.775 0.0
3594760051007 PREDICTED: retinoblastoma-related protei 0.980 0.997 0.784 0.0
2960817901006 unnamed protein product [Vitis vinifera] 0.979 0.997 0.784 0.0
3565567781002 PREDICTED: retinoblastoma-related protei 0.977 0.999 0.773 0.0
1222323541025 RecName: Full=Retinoblastoma-related pro 0.992 0.991 0.757 0.0
2547897871025 RecName: Full=Retinoblastoma-related pro 0.984 0.983 0.742 0.0
>gi|255578241|ref|XP_002529988.1| conserved hypothetical protein [Ricinus communis] gi|254789790|sp|B9SVG9.1|RBR_RICCO RecName: Full=Retinoblastoma-related protein gi|223530511|gb|EEF32393.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1708 bits (4424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 839/1026 (81%), Positives = 913/1026 (88%), Gaps = 8/1026 (0%)

Query: 1    MDDTKPSVTASNN-SESNAGDNDATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLA 59
            M+D KPS  ++ N      G+ND  E R TD CK GLSV E+ Y+E IKLF+ TKHLLLA
Sbjct: 1    MEDMKPSTASTKNLHHDGVGENDTIEVRFTDFCKIGLSVSEDAYEEAIKLFKGTKHLLLA 60

Query: 60   NISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVD 119
            NISAIGNGMPEEAERFWFAFV Y V+RLSEK  +N+QQ  +DN   LC ILR  KLNIVD
Sbjct: 61   NISAIGNGMPEEAERFWFAFVSYSVKRLSEKIRDNMQQRPDDNGLTLCQILRRAKLNIVD 120

Query: 120  FFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDA 179
            FFKELPQ++VK+GPILS +YG DWENRLEAKELQANFVHLSILS+ YKR YRE FL SDA
Sbjct: 121  FFKELPQYVVKAGPILSTMYGVDWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDA 180

Query: 180  NGDKQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPV 239
            N DKQSA A    Y+SDYHRFGWLLFLALR+HAFSRFKDLVTCTNGLVS+LAILIIHVPV
Sbjct: 181  NVDKQSATA----YMSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAILIIHVPV 236

Query: 240  RFRNFNIHDSSRFVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEA 299
            RFRNFN++DS RFVKK +KGVDL+ASLC+ YDTSED+LRK MEKTN LIADILKKKP  A
Sbjct: 237  RFRNFNLNDSQRFVKKGDKGVDLLASLCNKYDTSEDELRKTMEKTNNLIADILKKKPHMA 296

Query: 300  SECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDS 359
            SE K+ENL+NI+TDGLIY+E+LM++SSL SSL+ILEKDY++A R KGELDERVFINE+DS
Sbjct: 297  SEYKNENLDNINTDGLIYYEDLMEESSLRSSLDILEKDYEDAIRCKGELDERVFINEEDS 356

Query: 360  LLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTP 419
            LLGSGSLSGGA+++TG KRKFD ++SP KTITSPLSPHRS ASH NGI G   S+M  TP
Sbjct: 357  LLGSGSLSGGAISVTGTKRKFDQISSPTKTITSPLSPHRSPASHTNGILGSTNSRMAATP 416

Query: 420  VSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGE 479
            VSTAMTTAKWLRTVI PLPSKPS +LERFL SCD+DVT DV+RRAHIILEAIFPS+ LGE
Sbjct: 417  VSTAMTTAKWLRTVISPLPSKPSPQLERFLASCDRDVTNDVIRRAHIILEAIFPSNALGE 476

Query: 480  RCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHR 539
            RCVTGSLQ  NLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQ+LHA NLTSLLTNERFHR
Sbjct: 477  RCVTGSLQSTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHR 536

Query: 540  CMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSL 599
            CMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSL
Sbjct: 537  CMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSL 596

Query: 600  EERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSP 659
            EERLLESMVWEKGSSMYNSLTVARP LSAEINRLGLLA+PMPSLDAIA HINFSSGGL P
Sbjct: 597  EERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAEPMPSLDAIAVHINFSSGGLPP 656

Query: 660  VHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPL 719
            + S+ KHE SPGQNGDIRSPKRPCTDYRSVLVERN+FTSPVKDRLL   NLKSK  PPPL
Sbjct: 657  LSSVSKHEISPGQNGDIRSPKRPCTDYRSVLVERNSFTSPVKDRLLAFTNLKSKLPPPPL 716

Query: 720  QSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQ-IRESVYCL 778
            QSAFASPTRPNPGGGGETCAETGINIFF KINKLAAVRIN MVERLQ SQQ IRE+VY L
Sbjct: 717  QSAFASPTRPNPGGGGETCAETGINIFFSKINKLAAVRINGMVERLQQSQQHIRENVYRL 776

Query: 779  FQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVF 838
            FQQ+L+Q+TSLFFNRHIDQIILCCFYGVAKIS++NLTFREIIYNYRKQPQCKPQVFRSVF
Sbjct: 777  FQQVLSQQTSLFFNRHIDQIILCCFYGVAKISKVNLTFREIIYNYRKQPQCKPQVFRSVF 836

Query: 839  VDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGP 898
            VDW+SAR +GR+ QDHVDIITFYN+IF+PA KPLLVE+G AG  +K ++V EVN+N DG 
Sbjct: 837  VDWSSARHNGRTGQDHVDIITFYNEIFIPAAKPLLVEVGSAGITVKGSQVPEVNNNKDGQ 896

Query: 899  CPGSPKVSVFPALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQ 958
            CP SPKVS FP+LPDMSPKKVSA HNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQ
Sbjct: 897  CPASPKVSPFPSLPDMSPKKVSAAHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQ 956

Query: 959  SPSKDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYLQNGSAAASTCAVLK 1018
            SPSKDLT IN+RLN NR +RG+LNFD  DVDVGLVSDSMVA SLYLQNGS A+++ A LK
Sbjct: 957  SPSKDLTAINNRLNGNRNIRGSLNFD--DVDVGLVSDSMVAKSLYLQNGSCASTSGAPLK 1014

Query: 1019 PEQPDP 1024
             EQPDP
Sbjct: 1015 TEQPDP 1020

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449449453|ref|XP_004142479.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449487265|ref|XP_004157544.1| PREDICTED: retinoblastoma-related protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224053236|ref|XP_002297730.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa] gi|254789789|sp|B9GLX8.1|RBR_POPTR RecName: Full=Retinoblastoma-related protein gi|222844988|gb|EEE82535.1| hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7381060|gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|359476005|ref|XP_002280874.2| PREDICTED: retinoblastoma-related protein-like [Vitis vinifera] gi|254789791|sp|A7P514.1|RBR_VITVI RecName: Full=Retinoblastoma-related protein gi|359392418|gb|AEV45768.1| RBR protein [Vitis pseudoreticulata] Back     alignment and taxonomy information
>gi|296081790|emb|CBI20795.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556778|ref|XP_003546699.1| PREDICTED: retinoblastoma-related protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|122232354|sp|Q2ABE5.1|RBR_CAMSI RecName: Full=Retinoblastoma-related protein gi|89111303|dbj|BAE80326.1| retinoblastoma related protein [Camellia sinensis] Back     alignment and taxonomy information
>gi|254789787|sp|A9UL14.1|RBR_MEDSA RecName: Full=Retinoblastoma-related protein; Short=MsRBR gi|62956049|gb|AAY23367.1| retinoblastoma-related protein [Medicago sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1024
UNIPROTKB|Q66WV01003 RBR1 "Retinoblastoma-related p 0.968 0.989 0.703 0.0
TAIR|locus:20821941013 RBR1 "retinoblastoma-related 1 0.977 0.988 0.696 0.0
UNIPROTKB|A5D7M0 1140 RBL2 "Uncharacterized protein" 0.491 0.441 0.258 2.6e-48
UNIPROTKB|Q08999 1139 RBL2 "Retinoblastoma-like prot 0.487 0.438 0.254 6.9e-46
UNIPROTKB|E2RIG3 1139 RBL2 "Uncharacterized protein" 0.486 0.437 0.256 3e-45
UNIPROTKB|H9KZ75981 RBL2 "Uncharacterized protein" 0.456 0.476 0.260 4.3e-45
RGD|3541 1135 Rbl2 "retinoblastoma-like 2" [ 0.488 0.440 0.255 2.3e-44
UNIPROTKB|O55081 1135 Rbl2 "Retinoblastoma-like prot 0.488 0.440 0.255 2.3e-44
ZFIN|ZDB-GENE-030131-81791058 rbl1 "retinoblastoma-like 1 (p 0.268 0.259 0.319 8.3e-43
UNIPROTKB|E1BQ591064 RBL1 "Uncharacterized protein" 0.259 0.25 0.316 1.1e-42
UNIPROTKB|Q66WV0 RBR1 "Retinoblastoma-related protein 1" [Nicotiana benthamiana (taxid:4100)] Back     alignment and assigned GO terms
 Score = 3545 (1253.0 bits), Expect = 0., P = 0.
 Identities = 714/1015 (70%), Positives = 800/1015 (78%)

Query:    12 NNSESNAGDNDATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEE 71
             +NSE   G  D+ E R TD CKNGLS+ E+   E  KLF ++KHLLL+N S IG    E 
Sbjct:     8 SNSEETGGV-DSLEVRFTDFCKNGLSMGESFVTEATKLFNDSKHLLLSNNSTIGVITQEG 66

Query:    72 AERFWFAFVLYLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVDFFKELPQFLVKS 131
              ER+WF FVLY V+RLSEK   N   G   N F+LC ILR  KLN+VDFFKELPQF++K 
Sbjct:    67 VERYWFVFVLYSVKRLSEKEAGNSNNGDKGNAFSLCQILRGAKLNVVDFFKELPQFILKV 126

Query:   132 GPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTS 191
             GP LSN+YG+DWE RLE KELQ NFVHLS+LSK YKR Y+E FL S  N DK SA ++++
Sbjct:   127 GPTLSNLYGSDWEKRLEVKELQTNFVHLSLLSKYYKRAYQELFLASGNNEDKPSATSNSA 186

Query:   192 GYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSR 251
              ++  Y+RFGWLLFL+LRIH FSRFKDLVTCTNGLVS+LAIL+IHVPVRFRNFNI DSSR
Sbjct:   187 IHLPQYYRFGWLLFLSLRIHVFSRFKDLVTCTNGLVSVLAILMIHVPVRFRNFNIDDSSR 246

Query:   252 FVKKSNKGVDLIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENID 311
             FVKK +K VDL+ASL  IY TS DDLR+ M+K N LI + LKKKPC ASE ++ENL+N+D
Sbjct:   247 FVKKGDK-VDLLASLSKIYQTSIDDLRETMDKVNNLITEKLKKKPCLASEFRTENLDNLD 305

Query:   312 TDGLIYFENLMXXXXXXXXXNILEKDYDNATRNKGELDERVFINEDDXXXXXXXXXXXAV 371
             TDGL YFE+LM         + LEKDY +A +NKGELDER+F+NE+D           AV
Sbjct:   306 TDGLTYFEDLMEESCLSSSVSTLEKDYSDAIQNKGELDERIFVNEEDSLLGSGSLSGGAV 365

Query:   372 NITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVV-TPVSTAMTTAKWL 430
             N+ G KRKFD++ASP KT+TS LSP+RS    PN     A SKM   TPVSTAMTTA+WL
Sbjct:   366 NMNGTKRKFDAMASPAKTVTSTLSPYRS----PNC----ANSKMTAATPVSTAMTTARWL 417

Query:   431 RTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTG-SLQGA 489
             RTVI PL  KPSAELERFL SCD+DVT DV+RRA IILEAIFPSSG  E C  G SLQ  
Sbjct:   418 RTVIAPLQPKPSAELERFLSSCDRDVTADVIRRAQIILEAIFPSSGPAEHCAAGGSLQST 477

Query:   490 NLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELV 549
             +LMDNIWAEQRR EALKLYYRVL+ MCTAE+Q+L+  NLTSLLTNERFHRCMLACSAELV
Sbjct:   478 SLMDNIWAEQRRSEALKLYYRVLQTMCTAESQILNGNNLTSLLTNERFHRCMLACSAELV 537

Query:   550 LATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVW 609
             LATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVW
Sbjct:   538 LATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVW 597

Query:   610 EKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSGGLSPVHSLHKHETS 669
             EKGSSMYNSL VA+P L+AEINR+GLLA+PMPSLDAIA HIN SSG L P+ SLHK+  +
Sbjct:   598 EKGSSMYNSLAVAKPSLAAEINRMGLLAEPMPSLDAIAMHINLSSGSLPPLPSLHKNNLA 657

Query:   670 P-GQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRXXXXXXXXXXXXXXXXQSAFASPTR 728
             P GQ GDIRSPK+ C++YRSVLVERN+FTSPVKDR                 SAFASPTR
Sbjct:   658 PNGQIGDIRSPKKVCSEYRSVLVERNSFTSPVKDRFLALNNIKSKFPPPALHSAFASPTR 717

Query:   729 PNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTS 788
             PNPGGGGETCAET IN+FF KI KLAAVRIN M+ERLQLSQQIRE+VYCLFQ+IL+QRTS
Sbjct:   718 PNPGGGGETCAETAINVFFGKIVKLAAVRINGMIERLQLSQQIRETVYCLFQKILSQRTS 777

Query:   789 LFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSG 848
             LFFNRHIDQIILC FYGVAKISQLNLTF+EII NYRKQPQCKPQVFRSVFVDW  AR + 
Sbjct:   778 LFFNRHIDQIILCSFYGVAKISQLNLTFKEIICNYRKQPQCKPQVFRSVFVDWTLARHNV 837

Query:   849 RSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHNNDGPCPGSPKVSVF 908
             R+  DHVDIITFYN++F+P+VKPLLVEL PAG     N  SE N +NDG  P SPK S F
Sbjct:   838 RTGADHVDIITFYNEMFIPSVKPLLVELAPAGN----N--SEKNDHNDGQGPASPKPSPF 891

Query:   909 PALPDMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTDIN 968
             P LPDMSPKKVSA HNVYVSPLR SKMDALISHSSKSYYACVGESTHAYQSPSKDL  IN
Sbjct:   892 PKLPDMSPKKVSAVHNVYVSPLRASKMDALISHSSKSYYACVGESTHAYQSPSKDLDVIN 951

Query:   969 HRLNSNRRVRGTLNFXXXXXXXXXXXXXXXANSLYLQNGSAAASTCAVLKPEQPD 1023
             +RLN NR++RG LNF               ANSLYLQNG+   S  A +K EQP+
Sbjct:   952 NRLNGNRKLRGALNFDVDAGLVSDSIV---ANSLYLQNGNCR-SPVAHVKTEQPE 1002
GO:0032875 "regulation of DNA endoreduplication" evidence=IMP
GO:0051782 "negative regulation of cell division" evidence=IMP
TAIR|locus:2082194 RBR1 "retinoblastoma-related 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7M0 RBL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q08999 RBL2 "Retinoblastoma-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIG3 RBL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H9KZ75 RBL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|3541 Rbl2 "retinoblastoma-like 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O55081 Rbl2 "Retinoblastoma-like protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8179 rbl1 "retinoblastoma-like 1 (p107)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ59 RBL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4JF75RBR_SCUBANo assigned EC number0.72430.96090.9781N/Ano
B9GLX8RBR_POPTRNo assigned EC number0.77690.99410.9835yesno
A9UL14RBR_MEDSANo assigned EC number0.74290.98430.9834N/Ano
A9UL13RBR1_WHEATNo assigned EC number0.63050.92480.9895N/Ano
Q9SXN6RBR1_TOBACNo assigned EC number0.70930.92770.9885N/Ano
Q9LKZ3RBR1_ARATHNo assigned EC number0.73150.95800.9684yesno
Q3LXA7RBR3_MAIZENo assigned EC number0.62060.97070.9841N/Ano
A7P514RBR_VITVINo assigned EC number0.78430.98040.9970yesno
B1ABS0RBR_HIEPLNo assigned EC number0.70520.96380.9791N/Ano
B9SVG9RBR_RICCONo assigned EC number0.81770.99410.9980N/Ano
Q66WV0RBR1_NICBENo assigned EC number0.73790.96870.9890N/Ano
Q84QM3RBR1_ORYSJNo assigned EC number0.64610.96280.9762yesno
Q9SLZ4RBR1_PEANo assigned EC number0.74560.98630.9844N/Ano
Q2ABE5RBR_CAMSINo assigned EC number0.75710.99210.9912N/Ano
Q8H0J6RBR2_MAIZENo assigned EC number0.52160.80950.9572N/Ano
Q9LKX9RBR1_MAIZENo assigned EC number0.52840.81730.9653N/Ano
B1ABR6RBR_HIEPINo assigned EC number0.70990.96970.9880N/Ano
A2YXJ7RBR1_ORYSINo assigned EC number0.64610.96280.9762N/Ano
O82677RBR_CHERUNo assigned EC number0.69690.95800.9693N/Ano
Q8H252RBR_COCNUNo assigned EC number0.68900.97360.9861N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
RBR
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence;; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (1007 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00027417001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (370 aa)
    • • 0.519
GSVIVG00037279001
SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (428 aa)
    • • 0.495
GSVIVG00024137001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (490 aa)
     •• 0.483
GSVIVG00021527001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (459 aa)
    • • 0.478

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1024
pfam01858192 pfam01858, RB_A, Retinoblastoma-associated protein 2e-84
pfam01857130 pfam01857, RB_B, Retinoblastoma-associated protein 7e-61
pfam11934138 pfam11934, DUF3452, Domain of unknown function (DU 9e-48
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 0.004
>gnl|CDD|202014 pfam01858, RB_A, Retinoblastoma-associated protein A domain Back     alignment and domain information 
 Score =  270 bits (691), Expect = 2e-84
 Identities = 95/202 (47%), Positives = 124/202 (61%), Gaps = 10/202 (4%)

Query: 418 TPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGL 477
           TPV TAM T   LR V+  L   PS  L ++L SCD++ T  +++R  II E IF +   
Sbjct: 1   TPVRTAMNTVSQLREVLSSLSDAPSETLLQYLNSCDRNPTEAIIKRVKIIGEEIFETFAE 60

Query: 478 GERCVTGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERF 537
            E                 A QR   ALKLYYRVLE++  AE + LH  +L++LL  E F
Sbjct: 61  AEDQS----------PKEIASQRFKLALKLYYRVLESILKAEEKRLHDMDLSNLLEQEAF 110

Query: 538 HRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLN 597
           HR +LAC  ELVLAT+KT  + FP +LE  GITAFD  KVIESFIRHE  L RE+ +HLN
Sbjct: 111 HRSLLACCLELVLATYKTTDLSFPWILEVFGITAFDFYKVIESFIRHEGGLSREMVKHLN 170

Query: 598 SLEERLLESMVWEKGSSMYNSL 619
           S+EE++LES+ W+  S ++  +
Sbjct: 171 SIEEQILESLAWKSDSPLWEMI 192

This domain has the cyclin fold as predicted. Length = 192
>gnl|CDD|216744 pfam01857, RB_B, Retinoblastoma-associated protein B domain Back     alignment and domain information
>gnl|CDD|221325 pfam11934, DUF3452, Domain of unknown function (DUF3452) Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1024
KOG1010920 consensus Rb (Retinoblastoma tumor suppressor)-rel 100.0
PF01858194 RB_A: Retinoblastoma-associated protein A domain; 100.0
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 100.0
PF11934136 DUF3452: Domain of unknown function (DUF3452); Int 100.0
PF08934155 Rb_C: Rb C-terminal domain; InterPro: IPR015030 Th 99.75
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.07
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.99
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 95.76
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 95.32
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 95.01
KOG1597308 consensus Transcription initiation factor TFIIB [T 94.71
PRK00423310 tfb transcription initiation factor IIB; Reviewed 93.41
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 91.02
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 87.88
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 80.39
>KOG1010 consensus Rb (Retinoblastoma tumor suppressor)-related protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-198  Score=1707.83  Aligned_cols=854  Identities=34%  Similarity=0.499  Sum_probs=707.0

Q ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHhcc-cccCCCCCCCcCC-C
Q 001701           25 EARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLS-EKNGENLQQGSND-N  102 (1024)
Q Consensus        25 ~~rf~~lC~~~LnlD~~t~~~A~~~f~~~~~~~~~~~~~~~~~t~E~~~~~W~acaLY~a~r~~-~~tv~~~~~~~~g-n  102 (1024)
                      .+.|.++|+. ||||++++.+||++|.++++.|          |+||++.||+|||+|++||.+ +++|+|  +.++| |
T Consensus        35 ~q~~~~~c~~-lnld~~~~~ea~d~yta~~q~~----------slegs~~hW~~cAlY~~~r~S~~~~v~~--~~~~~~n  101 (920)
T KOG1010|consen   35 EQDSDELCRP-LNLDEQTETEAWDTYTAVSQRL----------SLEGSESHWLACALYTACRRSSVPTVGG--GIVEGKN  101 (920)
T ss_pred             hhhhhhhhhh-hcccchhhhhhHHHHHHHHhHh----------CCCccHHHHHHHHHHHHHHhccCCccCc--ceeeecc
Confidence            7899999998 9999999999999999999654          999999999999999999998 689986  45667 9


Q ss_pred             cccHHHHHHhhCCCHHHHHHhhHHHHHhhcCcccccCCchHHhHHHHHhHhhhhhhHHHHHHHHHHHHhccccCCCCCcc
Q 001701          103 EFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGD  182 (1024)
Q Consensus       103 ~vsLT~lLr~~~lsl~~Ff~km~~w~~~~~~~l~~l~~~~~e~rl~~keLe~nF~v~~vL~kky~~iF~~iF~~p~~~~~  182 (1024)
                      +||||+|||++++|++|||+||+||.+|++     + +.  ++|++++|||+||+|+++|||||++||.+||+.|..+.+
T Consensus       102 ~vsL~~Ilrs~k~sv~eff~km~~w~~ma~-----s-~~--~f~~~ieel~~~f~vssvl~KkY~~iF~~iF~~p~~e~~  173 (920)
T KOG1010|consen  102 EVSLTRILRSFKMSVIEFFTKMKQWVDMAN-----S-PQ--EFREEIEELQRNFKVSSVLFKKYKRIFRDIFKLPREELG  173 (920)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHhc-----C-HH--HHHHHHHHHHhccceehhHHHHHHHHHHHHHhCcccccc
Confidence            999999999999999999999999999984     3 44  557779999999999999999999999999999996655


Q ss_pred             ccccccc---CCCChhhHHHHHHHHHHHHHhhhcccCchHHHHhhHHHHHHHHHHhcCCcccc----ccccCC-Ccccc-
Q 001701          183 KQSAAAS---TSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFR----NFNIHD-SSRFV-  253 (1024)
Q Consensus       183 ~~~~~~~---~~~~~~d~~~f~W~LFL~aK~~~~~~f~DLV~s~~LLlc~Ldll~~n~p~~~~----~~~~~~-~~~~~-  253 (1024)
                      ..++.++   .+|++.++|+|||+|||++|+++++++||||+||||||||||++|+|++.+.|    ++.++| +.++. 
T Consensus       174 ~~~~~~n~~~~~~~~~~l~~f~W~lFL~~Kn~~~~~~dDLV~syqlllc~LDlv~~n~lc~~R~~~v~p~f~gl~~n~~~  253 (920)
T KOG1010|consen  174 YLNRPSNHARTPCSYAELFKFCWLLFLVAKNEFPSIEDDLVNSYQLLLCILDLVYKNLLCSPRKDLVNPSFKGLPKNWTA  253 (920)
T ss_pred             cCCCcccccCCcccHHHHHHHHHHHHHHHhcccchhhhhHHhhhhHHHHHHHHHHHHhccccccccccccccCCCCCCch
Confidence            4444333   78999999999999999999999999999999999999999999999776644    567776 33332 


Q ss_pred             ---cccCCcchhHHHhhhhcCCCHHHHHHHHHH-HHHHHHHHhccCCccccccccccCCCCCCCcccccccCCCCcchhH
Q 001701          254 ---KKSNKGVDLIASLCSIYDTSEDDLRKIMEK-TNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSS  329 (1024)
Q Consensus       254 ---k~~~~~~~il~~LC~~~~~~~~e~k~~~~~-~~~~I~~lf~k~~l~~~~~~~~~l~~~~~~~~~~~~gLl~~~~f~~  329 (1024)
                         +++.+++|||+.||++|+++.+|+|+|+++ |++++..+|..+.+.+   +..           .++||++.++|..
T Consensus       254 ~d~~~s~n~~cii~~lce~h~~li~eak~~k~~~fk~~~~~l~~~ktl~g---~~~-----------~~~gll~~~~f~~  319 (920)
T KOG1010|consen  254 RDFKPSENPPCIIEVLCELHEGLIDEAKNMKETNFKPFMSSLYEVKTLKG---DYL-----------LMRGLLDEGNFLP  319 (920)
T ss_pred             hhccccCCCcchhHHhhhhhhhHHHhhcchHHHhHHHHHHHHHhhhhhhc---ccc-----------cccccccccccch
Confidence               456788999999999999999999999999 5999999999877663   222           2589999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCcccccccCCCccccCCCCCCCccccccccccccccCCCcccCCCCCCCCCCCCCCCCCCCC
Q 001701          330 SLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAG  409 (1024)
Q Consensus       330 nl~~Lnk~YEe~vl~~GdlDERiFL~~d~~~ig~~~~s~~~~~~~~~~~k~~~~~sp~k~~~tplt~~~sp~s~~~g~~~  409 (1024)
                      |+++|||.||+||+++|||||||||+.|+++.+..+       .++..++.+...++++..-.+.+ +  ..++.+|.+|
T Consensus       320 ~~~~lnk~yeeyvl~vgelDeRifl~~Da~~~t~~~-------~s~~~~r~~~~~~~~~~~~~~~s-~--~~p~~~~~~y  389 (920)
T KOG1010|consen  320 NVKNLNKSYEEYVLDVGELDERIFLGEDAEEETKSS-------DSFESERLAVKSSLAQEFLKTQS-K--KSPPHTGVRY  389 (920)
T ss_pred             hHHHHhhhHHHHhccccchhhhhhcccchhhhhccC-------Cccchhccccccccchhhccccc-c--cCCCCccccc
Confidence            999999999999999999999999999988765221       12222222222233221111222 1  2345678899


Q ss_pred             CCCccccCchhhhHHhHHHHHHHHhCCCCCCCcHHHHHHHhhcCCChHHHHHHHHHHHHHhhccCCCCCccccccCCCCC
Q 001701          410 GATSKMVVTPVSTAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGA  489 (1024)
Q Consensus       410 ~~~~~~~~TPVs~Am~s~~wL~~~l~~l~~~PS~~L~~~~~sC~~d~~~~i~~rv~~i~e~~f~~~~~~~~~~~~~~~~~  489 (1024)
                      ..+.....|||++||++++||++++.|+.++||++|++||++|++||+++|++|+++|++.|+++...+..+     + .
T Consensus       390 ~~e~~~~~tPvsta~~sik~l~t~i~g~~~~psdkLe~~~~tc~r~p~e~Il~r~~~i~e~~~q~f~~~~~~-----g-~  463 (920)
T KOG1010|consen  390 NLELGNYPTPVSTATNSIKQLMTILNGLKKEPSDKLEQYLNTCSRDPTESILKRLKEIFEIFEQKFSAAEGS-----G-N  463 (920)
T ss_pred             ccccccCCCcchhHHHHHHHHHHHHhccccCCcHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHhhhhccC-----C-c
Confidence            999999999999999999999999999999999999999999999999999999999999999876543311     1 2


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHhhchhhHHHHHHHHHHHHHHhhccCCccchhHHhhhcCC
Q 001701          490 NLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGI  569 (1024)
Q Consensus       490 ~~~d~~~a~qR~~~a~~LYYrvLE~Il~~E~~rl~~~dls~LL~~d~FhrsLlACclEiVl~ty~~~~~~FPwILe~~~i  569 (1024)
                      ..++  ++.||+++|++|||||||+||++|.+|++..||+.||+|++||+||||||+|+||++|++ ++.|||||++|||
T Consensus       464 ~~~e--~~~~r~k~a~~LYykvLE~il~aE~~rl~~~dl~~LL~q~~Fh~sLlACclElVL~ty~~-~l~FPwvle~~~l  540 (920)
T KOG1010|consen  464 SCIE--IASQRFKLAERLYYKVLEKILKAELKRLPDMDLSKLLEQEIFHRSLLACCLELVLATYKT-DLSFPWVLECFGL  540 (920)
T ss_pred             cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCchhhhhcCC
Confidence            3455  799999999999999999999999999999999999999999999999999999999997 5999999999999


Q ss_pred             CcchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhhhccCCCchhHhhhhhccchhhhhhhcccCCCCCCchhhhhhc
Q 001701          570 TAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATH  649 (1024)
Q Consensus       570 ~afdf~KVIE~fVR~e~~LpRelvkHLn~IEE~ILEslAW~~~S~Lw~~L~~a~~~~~~ei~~~~~~~e~~p~~~~i~~~  649 (1024)
                      +|||||||||+|||||++|+||||||||+|||+|||||||++|||||++|++++       ++++++++++|+.+ ++..
T Consensus       541 ~aFdF~KVIE~~IRhE~~L~RemiKHLn~iEE~iLEslaW~~dS~Lw~~i~~~~-------~~~~~~~~~~~~~~-le~~  612 (920)
T KOG1010|consen  541 KAFDFYKVIESFIRHEGGLSREMIKHLNSIEERILESLAWKSDSPLWEMIKQAK-------PRLPTEEGVDPPDN-LESA  612 (920)
T ss_pred             cHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHhcc-------cccccccccccccc-cccc
Confidence            999999999999999999999999999999999999999999999999999987       46667777777665 2210


Q ss_pred             cccCCCCCCCcccCCccc----CCCCCCCCCCCCCCCcccccccccccccccCcccccccccCCCCCCCCCCCcccccCC
Q 001701          650 INFSSGGLSPVHSLHKHE----TSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFAS  725 (1024)
Q Consensus       650 ~~~~~~~~p~~p~~~~~~----~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~sP~k~~l~~~~~~~~k~~p~~~~s~~~s  725 (1024)
                      .   ..|  -.|...++.    ++|++     +|+..|+            ++|++++..                   .
T Consensus       613 ~---~~~--~~p~~~~~~~~~~~sp~~-----~Pk~~~~------------t~pv~~~an-------------------~  651 (920)
T KOG1010|consen  613 C---IAG--LLPLRVNHVRARYSSPVL-----EPKDKGT------------TIPVNGTAN-------------------A  651 (920)
T ss_pred             c---ccc--cCCccccccccccCCCCC-----Ccccccc------------ccccccccc-------------------c
Confidence            0   011  122122221    11221     2333322            445555332                   1


Q ss_pred             CCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHH
Q 001701          726 PTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYG  805 (1024)
Q Consensus       726 p~~~~~~~~~e~~~~t~l~lFfrKvy~LAa~RL~~LC~~L~l~~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~  805 (1024)
                      ++..++.+++.++++++|+|||||||+|||+||++||+||+++++++++|||||||+|+|+|+||+|||||||||||||+
T Consensus       652 ~qe~~~~~~~~~~~stsLsIF~rKvY~LAavRL~~Lc~rL~l~~e~r~~IWtlFehsl~~et~Lm~dRHLDQillCaiy~  731 (920)
T KOG1010|consen  652 GQEVTAFGVNKPRKSTSLSIFLRKVYHLAAVRLNDLCERLSLSDELREQIWTLFEHSLTNETELMRDRHLDQILLCAIYG  731 (920)
T ss_pred             cccCCcccCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccHHHHHhhhHHHHHHHHHHh
Confidence            23445556778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCccCHHHHHHHhhcCCCCCcceeeEEEecccccccCCCcc--cccccccchhhhccHHhhHHHHHHhcCCCCcc
Q 001701          806 VAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSE--QDHVDIITFYNKIFVPAVKPLLVELGPAGTAM  883 (1024)
Q Consensus       806 i~Kv~k~~~sFk~Ii~~Yr~QPqa~~~VyRsVli~~~~~~~~g~~~--~e~gDII~FYN~VFvp~mK~f~l~~~~~~~~~  883 (1024)
                      ||||++++++|++||++||+||||.++|||+|+|+....+..|..|  ++++|||+|||.||||.||+|+++|..+.+  
T Consensus       732 i~KV~~~~ltF~eIm~~YR~QPqa~~~vyRsV~i~~~~~~~~~~~~P~~~~~diI~fyN~iyV~~~k~~~i~~~~~~~--  809 (920)
T KOG1010|consen  732 IAKVKKEDLTFSEIMRAYRRQPQAVSLVYRSVLIKDKTNRDQGPSGPKEERSDIITFYNNIYVPPMKTFAIEYGLATT--  809 (920)
T ss_pred             heehhcccchHHHHHHHHhcCchhhhhhhhheeecccccccccCCCCcccccceeccccceehhhhhhhhhhhccCCC--
Confidence            9999999999999999999999999999999999832222233223  489999999999999999999999998631  


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCC--CCCCcccccCCcEEEecCCCCCcccccCCCCceEEEEeccccccCCCCC
Q 001701          884 KTNRVSEVNHNNDGPCPGSPKVSVFPALP--DMSPKKVSATHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPS  961 (1024)
Q Consensus       884 ~~~~~~~~~~~~d~~~~~sP~lSp~P~~~--~~SP~rvs~~~nvyvSP~k~~k~~~~lsp~s~~~y~~~Ges~~~~~SPs  961 (1024)
                                      ++.++++|.|++.  ..+|++||++||||||||+++  +.+++++.+.||+|        .|||
T Consensus       810 ----------------~~~~~lsp~~~i~~~~~e~~~~S~~h~v~is~~~~~--~~l~s~s~~~y~~~--------~sps  863 (920)
T KOG1010|consen  810 ----------------MDAKPLSPSPSIKVSIGEPRRLSQRHNVYISPHKNS--DRLQSRSTAEYYFC--------NSPS  863 (920)
T ss_pred             ----------------CCCCCCCCCccccccCCCCcchhhhcceeecCCCch--hhhcCcchhhcccc--------CCCC
Confidence                            2345666666654  458889999999999999887  34444444555555        3799


Q ss_pred             ccHHHHHHHhhcCCCcccceecCCCcccccccchhHhhhhccc------cCCCCCcCCC
Q 001701          962 KDLTDINHRLNSNRRVRGTLNFDDVDVDVGLVSDSMVANSLYL------QNGSAAASTC 1014 (1024)
Q Consensus       962 kdL~~IN~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 1014 (1024)
                      |+|++||.||+++....+..++.+   |  +++++.+||.+-.      |+++.+++++
T Consensus       864 k~L~ain~~i~~ss~~~~~~~~~~---e--s~~Es~~ani~~~~~~~~~~r~~D~~~~~  917 (920)
T KOG1010|consen  864 KDLPAINNLIRGSSERTKKKHIPG---E--SKSESKRANILQERTRMQLQRLQDAMSTR  917 (920)
T ss_pred             cchHHHHHHhhcCcccccccCCCc---c--chhhhhHhhhhhhhhHHHHhhhhhhhhcc
Confidence            999999999998544334444554   3  8999999998865      6666666553

>PF01858 RB_A: Retinoblastoma-associated protein A domain; InterPro: IPR002720 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF11934 DUF3452: Domain of unknown function (DUF3452); InterPro: IPR024599 This domain is found in proteins of the retinoblastoma protein family Back     alignment and domain information
>PF08934 Rb_C: Rb C-terminal domain; InterPro: IPR015030 The Rb C-terminal domain is required for high-affinity binding to E2F-DP complexes and for maximal repression of E2F-responsive promoters, thereby acting as a growth suppressor by blocking the G1-S transition of the cell cycle Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1024
4ell_A411 Structure Of The Inactive Retinoblastoma Protein Po 4e-37
4elj_A656 Crystal Structure Of The Inactive Retinoblastoma Pr 4e-24
4elj_A656 Crystal Structure Of The Inactive Retinoblastoma Pr 4e-16
1gux_A218 Rb Pocket Bound To E7 Lxcxe Motif Length = 218 4e-24
1gh6_B333 Retinoblastoma Pocket Complexed With Sv40 Large T A 3e-21
1gh6_B333 Retinoblastoma Pocket Complexed With Sv40 Large T A 8e-16
3pom_A352 Crystal Structure Of The Unliganded Retinoblastoma 8e-21
3pom_A352 Crystal Structure Of The Unliganded Retinoblastoma 6e-16
2r7g_A347 Structure Of The Retinoblastoma Protein Pocket Doma 1e-20
2r7g_A347 Structure Of The Retinoblastoma Protein Pocket Doma 6e-16
1n4m_A345 Structure Of Rb Tumor Suppressor Bound To The Trans 2e-20
1n4m_A345 Structure Of Rb Tumor Suppressor Bound To The Trans 5e-16
1ad6_A185 Domain A Of Human Retinoblastoma Tumor Suppressor L 5e-20
1gux_B152 Rb Pocket Bound To E7 Lxcxe Motif Length = 152 2e-15
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket Domain Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 214/461 (46%), Gaps = 92/461 (19%)
Query: 426 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRR----AHIILEAIFPSSGLGERC 481
           T + L  ++     +PS  L  +  +C  +    +++R     +I  E    +  +G+ C
Sbjct: 5   TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKF--AKAVGQGC 62
Query: 482 V-TGSLQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRC 540
           V  GS             QR    ++LYYRV+E+M  +E + L  +N + LL +  FH  
Sbjct: 63  VEIGS-------------QRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMS 109
Query: 541 MLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPRE 591
           +LAC+ E+V+AT+   T         + FP +L    + AFD  KVIESFI+ E +L RE
Sbjct: 110 LLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTRE 169
Query: 592 LRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHIN 651
           + +HL   E R++ES  W   S +++ +  ++       +R G    P   L++ A  +N
Sbjct: 170 MIKHLERCEHRIMESFAWLSDSPLFDLIKQSK-------DREG----PTDHLES-ACPLN 217
Query: 652 FSSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRXXXXXXXX 711
                  P+ +   H  +      +R+PK+  +        R N T+  + +        
Sbjct: 218 L------PLQN--NHTAADMYLEPVRAPKKKGS------TTRVNSTANAETQAT------ 257
Query: 712 XXXXXXXXQSAFASPTRPNPGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQ-- 769
                    SAF +          +    T +++F+ K+ +LA +R+N + ERL LS+  
Sbjct: 258 ---------SAFQT---------QKPLKSTSLSLFYKKVYRLAYLRLNTLCERL-LSEHP 298
Query: 770 QIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQC 829
           ++   ++ LFQ  L     L  +RH+DQI++C  YG+ K+  ++L F+ I+  Y+  P  
Sbjct: 299 ELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHA 358
Query: 830 KPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVK 870
             + F+ V +           E+++  II FYN +F+  +K
Sbjct: 359 VQETFKRVLI----------KEEEYDSIIVFYNSVFMQRLK 389
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein Phosphorylated At T373 Length = 656 Back     alignment and structure
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein Phosphorylated At T373 Length = 656 Back     alignment and structure
>pdb|1GUX|A Chain A, Rb Pocket Bound To E7 Lxcxe Motif Length = 218 Back     alignment and structure
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen Length = 333 Back     alignment and structure
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen Length = 333 Back     alignment and structure
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein Pocket Domain Length = 352 Back     alignment and structure
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein Pocket Domain Length = 352 Back     alignment and structure
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In Complex With Adenovirus E1a Cr1 Domain Length = 347 Back     alignment and structure
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In Complex With Adenovirus E1a Cr1 Domain Length = 347 Back     alignment and structure
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The Transactivation Domain Of E2f-2 Length = 345 Back     alignment and structure
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The Transactivation Domain Of E2f-2 Length = 345 Back     alignment and structure
>pdb|1AD6|A Chain A, Domain A Of Human Retinoblastoma Tumor Suppressor Length = 185 Back     alignment and structure
>pdb|1GUX|B Chain B, Rb Pocket Bound To E7 Lxcxe Motif Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1024
4elj_A656 Retinoblastoma-associated protein; cyclin fold, tu 1e-135
4elj_A656 Retinoblastoma-associated protein; cyclin fold, tu 1e-45
4ell_A411 Retinoblastoma-associated protein; cyclin fold, tu 1e-127
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 2e-62
2r7g_A347 PP110, retinoblastoma-associated protein, P105-RB, 3e-47
2qdj_A304 Retinoblastoma-associated protein; cyclin fold, cy 2e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} Length = 656 Back     alignment and structure
 Score =  422 bits (1085), Expect = e-135
 Identities = 112/613 (18%), Positives = 214/613 (34%), Gaps = 116/613 (18%)

Query: 22  DATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVL 81
           +  E   T LC+  L + ++  +     + +       ++  +  G  ++ +  W   + 
Sbjct: 2   EFEEPDFTALCQK-LKIPDHVRERAWLTWEKVS-----SVDGVLGGYIQKKKELWGICIF 55

Query: 82  YLVRRLSEKNGENLQQGSNDNEFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGA 141
                L E              F    + + +++++  FF  L +    +          
Sbjct: 56  IAAVDLDE------------MSFTFTELQKNIEISVHKFFNLLKEIDTST---------- 93

Query: 142 DWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQSAAASTSGYISDYHRFG 201
             +       L   +  L  L    +R     +L   ++              +   +  
Sbjct: 94  --KVDNAMSRLLKKYDVLFALFSKLERTCELIYLTQPSSSISTEI------NSALVLKVS 145

Query: 202 WLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVD 261
           W+ FL  +        DLV     ++ +L   I   P                       
Sbjct: 146 WITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKE-----PYKTAVIENDTR 200

Query: 262 LIASLCSIYDTSEDDLRKIMEKTNTLIADILKKKPCEASECKSENLENIDTDGLIYFENL 321
           +I  LC  ++ + D++  +  K                       +  +++ GL+    L
Sbjct: 201 IIEVLCKEHECNIDEVANVAFKNF---------------------IPFMNSLGLVTSNGL 239

Query: 322 MDDSSLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFD 381
                    +  L K Y+       +LD R+F++ D +L             T +   F+
Sbjct: 240 P-------EVENLSKRYEEIYLKNKDLDARLFLDHDKTLQ------------TDSIDSFE 280

Query: 382 SLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVSTAMTTAKWLRTVICPLPSKP 441
           +  +P K+                            TPV T M T + L  ++     +P
Sbjct: 281 TQRTPRKSNLDEEVNVIPPH----------------TPVRTVMNTIQQLMMILNSASDQP 324

Query: 442 SAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRR 501
           S  L  +  +C  +    +++R   I   IF              +           QR 
Sbjct: 325 SENLISYFNNCTVNPKESILKRVKDIGY-IFKEK---------FAKAVGQGCVEIGSQRY 374

Query: 502 LEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVT---- 557
              ++LYYRV+E+M  +E + L  +N + LL +  FH  +LAC+ E+V+AT+   T    
Sbjct: 375 KLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNL 434

Query: 558 -----MLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKG 612
                + FP +L    + AFD  KVIESFI+ E +L RE+ +HL   E R++ES+ W   
Sbjct: 435 DSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSD 494

Query: 613 SSMYNSLTVARPV 625
           S +++ +  ++  
Sbjct: 495 SPLFDLIKQSKDR 507
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} Length = 656 Back     alignment and structure
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens} Length = 411 Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Length = 347 Back     alignment and structure
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B Length = 347 Back     alignment and structure
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} Length = 304 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1024
d2r7ga1199 a.74.1.3 (A:380-578) Retinoblastoma tumor suppress 2e-77
d2r7ga2142 a.74.1.3 (A:644-785) Retinoblastoma tumor suppress 4e-56
d1aisb295 a.74.1.2 (B:1206-1300) Transcription factor IIB (T 0.003
>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Retinoblastoma tumor suppressor domains
domain: Retinoblastoma tumor suppressor domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  249 bits (638), Expect = 2e-77
 Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 426 TAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGS 485
           T + L  ++     +PS  L  +  +C  +    +++R    +  IF             
Sbjct: 2   TIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKD-IGYIFKEK---------F 51

Query: 486 LQGANLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACS 545
            +           QR    ++LYYRV+E+M  +E + L  +N + LL +  FH  +LAC+
Sbjct: 52  AKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACA 111

Query: 546 AELVLATHKTVT---------MLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHL 596
            E+V+AT+   T         + FP +L    + AFD  KVIESFI+ E +L RE+ +HL
Sbjct: 112 LEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHL 171

Query: 597 NSLEERLLESMVWEKGSSMYNSLTVAR 623
              E R++ES+ W   S +++ +  ++
Sbjct: 172 ERCEHRIMESLAWLSDSPLFDLIKQSK 198
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Length = 142 Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1024
d2r7ga1199 Retinoblastoma tumor suppressor domains {Human (Ho 100.0
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 100.0
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.05
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.93
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.04
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.02
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 94.8
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 93.62
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 93.38
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 86.56
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 80.54
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 80.05
>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Retinoblastoma tumor suppressor domains
domain: Retinoblastoma tumor suppressor domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=458.76  Aligned_cols=189  Identities=31%  Similarity=0.510  Sum_probs=170.4

Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             69999999918999999189999985359892888999999999856467888964333677787743359999999999
Q 001701          425 TTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEA  504 (1024)
Q Consensus       425 ~s~~wL~~~ls~l~~~PS~~L~~~~~sC~~d~~~~i~~Rv~~i~e~~f~~~~~~~~~~~~~~~~~~~~d~~~a~qR~~~a  504 (1024)
                      +|++|||++++|++++||++|.+||++|++||+++|++||+.|++.|.+.+..+.    +      .....|++||+.+|
T Consensus         1 ~s~~~L~~~l~~~~~~PS~~L~~~f~~C~~dp~~~i~~rv~~l~~~F~~~~~~~~----~------~~~~~~a~~R~~~a   70 (199)
T d2r7ga1           1 NTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAKAV----G------QGCVEIGSQRYKLG   70 (199)
T ss_dssp             CCHHHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH----C------GGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC----C------CHHHHHHHHHHHHH
T ss_conf             9588999984589999889999999848998799999999999999999863657----8------42169999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC---------CCHHHHHHHCCCCCCHHH
Q ss_conf             99999999999999996305332587410046789999998999995406776---------442478641189851578
Q 001701          505 LKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTVT---------MLFPAVLERTGITAFDLS  575 (1024)
Q Consensus       505 ~~LYYrvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~sy~~~~---------~~FPwILe~~~i~aFdf~  575 (1024)
                      ++|||+|||+||.+|.+|+++.|+++||++++||+||||||+|||+|+|++++         +.|||||++|+|+|||||
T Consensus        71 ~~LYY~~Le~Il~~E~~r~~~~~l~~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~l~FPwIL~~~~i~afdf~  150 (199)
T d2r7ga1          71 VRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFY  150 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf             99999999999999998676204999984758899999999999999962432235665535776099998099798999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf             798999951189999899999999999985632167991057666205
Q 001701          576 KVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVAR  623 (1024)
Q Consensus       576 KVIE~fVR~e~~LpRelvkHLn~IEEqILEslAW~~~S~Lw~~L~~a~  623 (1024)
                      ||||+|||||++||||||||||+|||||||||||++|||||++|+.++
T Consensus       151 KVIE~fVr~e~~L~RelvKHLn~iEe~iLEslaW~~~Splw~~l~~~~  198 (199)
T d2r7ga1         151 KVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSK  198 (199)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             998998743788998999999999999999988367986999988724
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure