Citrus Sinensis ID: 001733

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------102
MSFNKAGTSITSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYSVSVEVSMNSSMNSKSYDMPLPIEYFGSTSLSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSASTYTM
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccccccHHHcccccccccccccccHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccc
cccccccHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHEHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHcHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHccccccccHHccccccHHHccccEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEEcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHcHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccc
msfnkagtSITSLADSLLESISEITAVCMELesekfteigcyfyratpvimelqttkytpaNALEILQSLSKSISLGKDLVakckrgdhsmsdAELRSTMLQLLGVIRRMGEclslipsstfrgqEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYSVSVEVSMnssmnsksydmplpieyfgstslssqssdhstsrsislpkvaqYIEPlyetfycpltkeimddpvtiesgvtYERNAITAWFEKfetsgdifcpttgkklmsrglNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKqynkvqvrnvGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLssshrpvrhESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNlernpdnikcmaengllEPLMHHLNEGSEEIQMEMASYLGEIVlghdskinvpgrAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIihnepmnskEEAAAILANILESGLehhslqvnshghtMVSDYVVYNIIYMLknstpdelNVHLIRILQcltkspkpmaTIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCktrgqpenliqcptetiHITEKQAVSAKFLAKlphqnltlNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGlenlssesinlskppqikskkfmkffslpkslsvgsskkksvslcpvhrgacssqntfCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVkggnkqasdisqdrllpatlvsafhhgdvnTRQMAEKILRHLnkmpnfsastytm
msfnkagtsitSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRgdhsmsdaeLRSTMLQLLGVIRRMGECLSLipsstfrgqEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYSVSVEVSMNSSMNSKSYDMPLPIEYFGSTSLSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPttgkklmsrglnTNVALKTTieewkdrndaerIKVSRAAlslagsdrMVLEAIKDLQTVCQrkqynkvqvrnvgvlpLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTInliqrsgtrTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGlenlssesinlskppqiKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRhlnkmpnfsastytm
MSFNKAGTSITSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYsvsvevsmnssmnsksYDMPLPIEYFGstslssqssdhstsrsisLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDisilikllsssHRPVRHEslllllelsstrslCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKeeaaailanileSGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGlenlssesinlsKPPQIKSKKFMKFFslpkslsvgsskkksvslCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSASTYTM
*************ADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCK**********LRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFDIQVLHTK********************LY**********************************************PKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEG*EEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPM****EAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLE****************************************SLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQA*DISQDRLLPATLVSAFHHGDVNTRQM***IL****************
*************ADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQ***********ILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSL**********************************************************************************************LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRA*******DRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKD**VRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKF********AEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDS**NVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIH****NSKEEAAAILANILESGLEHHSLQVN**GHTMVSDYVVYNIIYMLK******LNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLE***********AAIKLLTTLSPYLGHTLVERLCKTRGQPENLI***********KQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTIN**************AYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLP*******SKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKE*****LQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSA***********AEKILRHL*************
*********ITSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYSVSVEVSMNSSMNSKSYDMPLPIEYFGS***************ISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKS**************PVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSASTYTM
******GTSITSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYSVSVEVSMNSSMNSKSYDMPLPIEYFGSTS********************QYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKV*********SDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMP*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFNKAGTSITSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYSVSVEVSMNSSMNSKSYDMPLPIEYFGSTSLSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSASTYTM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1019 2.2.26 [Sep-21-2011]
Q9CAA71033 Putative U-box domain-con yes no 0.934 0.921 0.539 0.0
Q9SFX2811 U-box domain-containing p no no 0.782 0.982 0.365 1e-137
Q9LM76801 U-box domain-containing p no no 0.757 0.963 0.372 1e-137
Q9SNC6660 U-box domain-containing p no no 0.332 0.513 0.269 9e-19
Q681N2660 U-box domain-containing p no no 0.178 0.275 0.306 3e-17
Q9ZV31654 U-box domain-containing p no no 0.319 0.498 0.268 3e-15
Q5VRH9611 U-box domain-containing p no no 0.326 0.545 0.25 1e-14
Q8VZ40632 U-box domain-containing p no no 0.337 0.544 0.273 1e-13
Q9XIJ5697 U-box domain-containing p no no 0.218 0.319 0.280 7e-13
O80742686 U-box domain-containing p no no 0.236 0.351 0.261 1e-12
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1 Back     alignment and function desciption
 Score = 1093 bits (2827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1040 (53%), Positives = 727/1040 (69%), Gaps = 88/1040 (8%)

Query: 51   MELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRM 110
            ME+QT +     +++I +SLS S+ + K LV K +  + + S  +LRS      GV+++M
Sbjct: 1    MEIQTAESNVICSIDIFESLSDSVDVAKKLVEKSQESNEAESTTDLRSIEAGFEGVVKQM 60

Query: 111  GECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFD--------------IQVLHTKELES 156
            GE L  IP STF  +EY  V + SLS EM NA                 I   HT ++ S
Sbjct: 61   GETLQSIPESTFDEEEYIGVVIQSLSNEMQNATIGDGSKSEMINNGQQKISAKHTPDIVS 120

Query: 157  QMDLQAMEEQAPLELDLYSVSVEVSMNSSM-----NSKSYDMP----------------- 194
            +     MEE      DLY    E S  S M      S+  D+P                 
Sbjct: 121  EQ----MEE------DLYPTDPEFSYESYMMYSESQSQMTDIPDIPSKSTDVSRQRKHGN 170

Query: 195  ----------LPIEYFGSTSLSSQ----------------------SSDHSTSRSIS--- 219
                      +P     ST++SSQ                      SS+ S+ R      
Sbjct: 171  HSESQSLVTEIPDIPSQSTNVSSQRKHGNLSKSQSQSTEIPDIPSQSSNASSQRKYGNLS 230

Query: 220  -----LPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIF 274
                 LP+V Q++EP Y+ F CPLTKEIM+DPVT E+GVT ER A+  WF+ F  S +I 
Sbjct: 231  ESLSMLPQVTQFMEPPYQAFICPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNSDEIN 290

Query: 275  CPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQT 334
            CP TG+KL +  L+ NV LKT I+EWK RN+A RIKV+ AALSL GS+ MV++A++DLQ 
Sbjct: 291  CPVTGQKLTTE-LSANVVLKTIIQEWKVRNEAARIKVAHAALSLGGSESMVIDALRDLQM 349

Query: 335  VCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVED-DEGKEMIAETMD 393
             C+ K+YNKVQVR  G++ LL + L Y+ ++VR   ++ LR L  E+ D+GKEMI +T+ 
Sbjct: 350  TCEGKEYNKVQVREAGIIQLLDRYLTYRSKDVRFELLKFLRTLADEETDDGKEMIVKTIT 409

Query: 394  ISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAA 453
            +S +IKLL SSH+PVRH +  LLLELS ++  CEKIG+  G IL+L+T K+N  +D FA+
Sbjct: 410  MSCVIKLLGSSHQPVRHAAQALLLELSKSQHACEKIGTARGAILMLVTAKYNRELDSFAS 469

Query: 454  EIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKIN 513
            E +DQILRNLE+ P+NIK MAE+GLLEPL+ HL EGSEE Q+ MA+YL EI +GH+ K  
Sbjct: 470  ETSDQILRNLEKCPENIKQMAESGLLEPLLGHLAEGSEETQVAMAAYLVEIDIGHEKKTY 529

Query: 514  VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIH 573
            V  +A   LI +V S N   RR AFKAL  IS +HP+ KILVE GI+++M EEMF + + 
Sbjct: 530  VAEKACPALIGLVQSENIDARRAAFKALAHISLYHPNNKILVEVGIIKIMVEEMFTKRVF 589

Query: 574  NEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVH 633
            ++ MNS+ EAA ILANILESGLEH + +VN+HGHT+ SDY VYNII+MLKNS+PD+LN+ 
Sbjct: 590  SDLMNSRNEAATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKNSSPDDLNID 649

Query: 634  LIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHT 693
            LIRIL  L+KSP+ MATIVSVIKET+AS++++E+INNPHDEL V A+KLL  L+PY+GHT
Sbjct: 650  LIRILLSLSKSPRAMATIVSVIKETDASFAMIELINNPHDELGVGALKLLIALTPYIGHT 709

Query: 694  LVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTIL 753
            L ERLCKTRGQPENLIQCP E   ITEK AVSAK LAKLPHQNLTLNLAL   ++V  IL
Sbjct: 710  LSERLCKTRGQPENLIQCPVEANQITEKHAVSAKLLAKLPHQNLTLNLALVNESIVSEIL 769

Query: 754  QTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKT 813
              I+LIQRSG RTSRYA+ +LEGL+GILVRFTTTLYEPQ+++LAR H+ TSVF +LLMKT
Sbjct: 770  HAIHLIQRSGARTSRYATDFLEGLVGILVRFTTTLYEPQMMYLARNHDLTSVFVDLLMKT 829

Query: 814  SCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVH 873
            S DEVQ+L+A GLENLSS ++ LS+PPQ +S KFM   S+P+S S+ SSKKK + +C +H
Sbjct: 830  SSDEVQRLSATGLENLSSTTMTLSRPPQPRSTKFMGSLSMPRSFSLRSSKKKQIEICAIH 889

Query: 874  RGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEV 933
            RG CS++NTFCL++A A+ +LLACL  + VEVVE+AL+A+CTLLD+KV+V+KS+SMLSE+
Sbjct: 890  RGVCSAKNTFCLVEANAITKLLACLQSDKVEVVESALAAICTLLDDKVEVEKSLSMLSEM 949

Query: 934  NAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDV 993
            NA+Q +LN VKEH++E L QK+FWMI++F+++GG+K AS+ISQDR+L   LVSAFH GD 
Sbjct: 950  NAVQLILNAVKEHKKESLLQKAFWMIDKFIIRGGDKYASEISQDRMLSGMLVSAFHRGDG 1009

Query: 994  NTRQMAEKILRHLNKMPNFS 1013
            NTRQMAE ILR L+KMP+FS
Sbjct: 1010 NTRQMAENILRRLDKMPSFS 1029
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1 Back     alignment and function description
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1 Back     alignment and function description
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 Back     alignment and function description
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 Back     alignment and function description
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 Back     alignment and function description
>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1 Back     alignment and function description
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1019
3594734831055 PREDICTED: putative U-box domain-contain 0.968 0.935 0.663 0.0
224111834935 predicted protein [Populus trichocarpa] 0.917 1.0 0.658 0.0
224099267949 predicted protein [Populus trichocarpa] 0.925 0.993 0.648 0.0
297738212949 unnamed protein product [Vitis vinifera] 0.911 0.978 0.616 0.0
2978416231032 hypothetical protein ARALYDRAFT_339138 [ 0.944 0.932 0.545 0.0
425630631033 putative U-box domain-containing protein 0.934 0.921 0.539 0.0
2384790141035 putative U-box domain-containing protein 0.901 0.887 0.533 0.0
3341837521061 putative U-box domain-containing protein 0.901 0.866 0.533 0.0
4494352801015 PREDICTED: putative U-box domain-contain 0.976 0.980 0.524 0.0
1938485261088 beta-catenin repeat family protein [Brac 0.963 0.902 0.445 0.0
>gi|359473483|ref|XP_002267498.2| PREDICTED: putative U-box domain-containing protein 42-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1357 bits (3511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1004 (66%), Positives = 811/1004 (80%), Gaps = 17/1004 (1%)

Query: 23   EITA--VCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDL 80
            EITA  VC+ +E E F E+G Y YR +P I+ELQTTK TP NA+ ILQSLSKS+ L K+L
Sbjct: 55   EITASVVCINVEQESFMELGSYLYRTSPAIIELQTTKNTPENAMRILQSLSKSVDLAKNL 114

Query: 81   VAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFRGQEYAEVAVLSLSKEML 140
            V + ++  H +SD EL S + QL GVI+ MGE LSLIP STF  QEYAE+AV S+SKEM 
Sbjct: 115  VGQLQKDSHPISDPELGSIIEQLEGVIKLMGEELSLIPPSTFGNQEYAEIAVRSVSKEMQ 174

Query: 141  NAHFDI---QVLHTKELESQ-MDLQAM-EEQAPLELDLYSVSVEVSMNSSMNSKSYDMPL 195
            NA F +   QV   K L+ + + L+ + +EQ P E DLYS+       S+ N +  D+P 
Sbjct: 175  NARFGVCQTQVTSPKALQPRALSLEELPKEQVPTERDLYSIDF-----STDNPQLPDIPH 229

Query: 196  PIEYFGSTSLSSQSSDHSTSRSISL---PKVAQYIEPLYETFYCPLTKEIMDDPVTIESG 252
             +     +       +H    + SL   P+V Q++EP YETF+CPLTK IM+DPVTIESG
Sbjct: 230  HMNVIPKSKCYRSQRNHENMSNGSLKNMPQVTQFMEPFYETFFCPLTKNIMEDPVTIESG 289

Query: 253  VTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVS 312
            VTYER AIT WFEK+  S +I CP TG+KL S+GL+TN+ALKTTIEEWK+RN+A RIKV+
Sbjct: 290  VTYERKAITEWFEKYNNSAEICCPATGQKLRSKGLSTNIALKTTIEEWKERNEAARIKVA 349

Query: 313  RAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAME 372
            RAALSLA S+ MVLEA+ DLQ++C RK YNKVQ+RNVG+LPLL K LEYKD NVR A +E
Sbjct: 350  RAALSLAISESMVLEALNDLQSICGRKPYNKVQIRNVGMLPLLVKFLEYKDTNVRLATLE 409

Query: 373  LLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSI 432
            +LR+L  EDDEGKEM+A+ MDIS  IK+LSS H+P+RH +LL LLELS ++SLCEKIGS+
Sbjct: 410  ILRELA-EDDEGKEMVAKVMDISTTIKMLSSDHQPIRHAALLFLLELSRSQSLCEKIGSV 468

Query: 433  PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEE 492
             GGIL+LIT K+NWS D FA E AD+IL+NLE +P+NIK MA+NG LEPL+HHL EG EE
Sbjct: 469  AGGILMLITIKYNWSFDTFALEKADEILKNLETSPNNIKRMADNGYLEPLLHHLIEGCEE 528

Query: 493  IQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK 552
            ++MEM SYLGEI LGHDSK  V  RA+  L++M+H+GN+LT++ AFKAL QISS+HP+ K
Sbjct: 529  MKMEMGSYLGEIALGHDSKTYVAERASPALVKMLHTGNTLTKKAAFKALEQISSYHPNGK 588

Query: 553  ILVEAGIVQVMAEEMFI-RIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVS 611
            ILVEAGIVQ++ EEM   R IHNE MNS +EAAAIL N+LESG+E  +LQVN+HGHTM S
Sbjct: 589  ILVEAGIVQIVVEEMLTPRKIHNETMNSIKEAAAILGNLLESGIEFENLQVNTHGHTMGS 648

Query: 612  DYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP 671
            DY+VY+II+MLKNSTPD+LN +LIRIL CL KSPK  ATIVSV++ETEASY+L+E+INNP
Sbjct: 649  DYIVYSIIHMLKNSTPDKLNTNLIRILLCLAKSPKSNATIVSVVRETEASYTLIELINNP 708

Query: 672  HDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAK 731
            H+EL +A++KLL TLSPYLGHT  ERLCKTRGQP++L+Q P  T  IT+KQAVSA FLA 
Sbjct: 709  HEELGIASMKLLITLSPYLGHTFAERLCKTRGQPQSLLQSPGGTNQITQKQAVSANFLAD 768

Query: 732  LPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEP 791
            LPHQNL LNLAL + + VP ILQ+I+ +QRSGTRTSRYASAYLEGL+GI+VRFTTTL+EP
Sbjct: 769  LPHQNLRLNLALLSNDSVPMILQSIHQMQRSGTRTSRYASAYLEGLVGIIVRFTTTLFEP 828

Query: 792  QILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFF 851
            Q+LFLAR +NFTSV TELL KTS D+VQ+L+AIGL+NLSSES+NLSKPPQIK  KF+KFF
Sbjct: 829  QMLFLARNYNFTSVLTELLTKTSSDKVQRLSAIGLKNLSSESVNLSKPPQIKRTKFLKFF 888

Query: 852  SLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALS 911
             LP+SLS GSSK K + +CPVHRGACSSQNTFCL+DAKAV+RLLACL HEN EV+EAALS
Sbjct: 889  KLPRSLSAGSSKSKKIQVCPVHRGACSSQNTFCLVDAKAVERLLACLEHENAEVIEAALS 948

Query: 912  ALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQA 971
            ALCTLLD+KVDVDKSVS+LS V+ IQHVLNVVKEHR+E L++KS W+IERFL+KGG++ A
Sbjct: 949  ALCTLLDDKVDVDKSVSLLSGVDCIQHVLNVVKEHREEGLREKSLWVIERFLMKGGDRSA 1008

Query: 972  SDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSAS 1015
            S ISQDR LPATLVSAFHHGD +T+QMA KILRHLN+MP  + +
Sbjct: 1009 SYISQDRSLPATLVSAFHHGDGSTKQMAAKILRHLNQMPKVTTN 1052

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111834|ref|XP_002315995.1| predicted protein [Populus trichocarpa] gi|222865035|gb|EEF02166.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224099267|ref|XP_002311419.1| predicted protein [Populus trichocarpa] gi|222851239|gb|EEE88786.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738212|emb|CBI27413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297841623|ref|XP_002888693.1| hypothetical protein ARALYDRAFT_339138 [Arabidopsis lyrata subsp. lyrata] gi|297334534|gb|EFH64952.1| hypothetical protein ARALYDRAFT_339138 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42563063|ref|NP_177060.3| putative U-box domain-containing protein 42 [Arabidopsis thaliana] gi|75333632|sp|Q9CAA7.1|PUB42_ARATH RecName: Full=Putative U-box domain-containing protein 42; AltName: Full=Plant U-box protein 42 gi|12323215|gb|AAG51587.1|AC011665_8 hypothetical protein [Arabidopsis thaliana] gi|332196744|gb|AEE34865.1| putative U-box domain-containing protein 42 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238479014|ref|NP_001154460.1| putative U-box domain-containing protein 42 [Arabidopsis thaliana] gi|332196745|gb|AEE34866.1| putative U-box domain-containing protein 42 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183752|ref|NP_001154461.2| putative U-box domain-containing protein 42 [Arabidopsis thaliana] gi|332196746|gb|AEE34867.1| putative U-box domain-containing protein 42 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449435280|ref|XP_004135423.1| PREDICTED: putative U-box domain-containing protein 42-like [Cucumis sativus] gi|449493524|ref|XP_004159331.1| PREDICTED: putative U-box domain-containing protein 42-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|193848526|gb|ACF22715.1| beta-catenin repeat family protein [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1019
TAIR|locus:2030462801 SAUL1 "senescence-associated E 0.755 0.961 0.340 7.7e-119
TAIR|locus:2014584811 PUB43 "plant U-box 43" [Arabid 0.763 0.959 0.338 2.7e-116
TAIR|locus:2162276660 PUB15 "Plant U-Box 15" [Arabid 0.316 0.489 0.24 5.7e-16
TAIR|locus:2075140660 PUB13 "plant U-box 13" [Arabid 0.078 0.121 0.392 1.6e-14
TAIR|locus:2045334829 PUB4 "plant U-box 4" [Arabidop 0.133 0.164 0.292 3.6e-13
TAIR|locus:2010424768 PUB45 "plant U-box 45" [Arabid 0.114 0.152 0.308 4.5e-10
UNIPROTKB|Q5VRH9611 PUB12 "U-box domain-containing 0.070 0.117 0.394 1.4e-09
TAIR|locus:2158252707 AT5G67340 [Arabidopsis thalian 0.108 0.157 0.316 1.4e-09
TAIR|locus:2013688729 PUB17 "plant U-box 17" [Arabid 0.072 0.101 0.414 1.6e-09
TAIR|locus:2195563686 PUB19 "plant U-box 19" [Arabid 0.137 0.204 0.339 2.8e-09
TAIR|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
 Identities = 270/794 (34%), Positives = 440/794 (55%)

Query:   227 IEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSG-DIFCPTTGKKLMSR 285
             ++ +YE F CPLTKE+M DPVT+E+G T+ER AI  WF++   SG    CP T ++L S 
Sbjct:    20 VDHIYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTSQELTST 79

Query:   286 GLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQ 345
              ++ ++AL+ TIEEW+ RNDA ++ ++R +L L  ++  +L+A+  ++ +C+  + N+  
Sbjct:    80 DVSASIALRNTIEEWRSRNDAAKLDIARQSLFLGNAETDILQALMHVRQICRTIRSNRHG 139

Query:   346 VRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE-DDEGKEMIAETMDXXXXXXXXXXX 404
             VRN  ++ ++  +L+     VR  A++ L Q+VVE DDE K ++AE              
Sbjct:   140 VRNSQLIHMIIDMLKSTSHRVRYKALQTL-QVVVEGDDESKAIVAE--GDTVRTLVKFLS 196

Query:   405 HRPV--RHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRN 462
             H P   R                CEKIGSI G +++L+    + S +V   E AD+ L N
Sbjct:   197 HEPSKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLEN 256

Query:   463 LERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTL 522
             +ER+ + ++ MA  G L+PL+  L EGS E ++ MAS+LGE+ L +D K+ V     S+L
Sbjct:   257 MERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLNNDVKVLVAQTVGSSL 316

Query:   523 IRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKXX 582
             + ++ SG+   R  A KAL +ISS   S K+L+  GI+  + +++F    +N P+  K  
Sbjct:   317 VDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRLKEV 376

Query:   583 XXXXXXXXXXSGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLT 642
                        G +           T+VS+  V N+++++ N+ P  +   L+ +L  LT
Sbjct:   377 SATILANIVNIGYDFDKA-------TLVSENRVENLLHLISNTGP-AIQCKLLEVLVGLT 428

Query:   643 KSPKPMATIVSVIKETEASYSLLEVIN-NPHDELAVAAIKLLTTLSPYLGHTLVERLCKT 701
               PK +  +V  IK + A  SL++ I    +D+L +A+IKLL  LSP++   L + LC T
Sbjct:   429 SCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGT 488

Query:   702 RGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQR 761
              GQ  +L+   +E   ITE+QA +A  LA+LP ++L L   +        I+  +  I++
Sbjct:   489 AGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQ 548

Query:   762 SGTRTSRYASAYLEGLIGILVRFTTTLY-EPQILFLARTHNFTSVFTELLMKTSCDEVQK 820
                +  R+ + +LEGL+ IL R T     E + +   R H+  S+F  LL     D +Q 
Sbjct:   549 GDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQM 608

Query:   821 LAAIGXXXXXXXXXXXXKPPQIKSKKFMKFFXXXXXXXXXXXXXXXXXXCPVHRGACSSQ 880
             ++A+             + P      +                      C +H+G CS +
Sbjct:   609 VSAMALENLSLESIKLTRMPDPPPVNYC-----GSIFSCVRKPHVVNGLCKIHQGICSLR 663

Query:   881 NTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVL 940
              TFCL++  AV++L+A L HENV+VVEAAL+AL +LL++ +DV+K V +L E + I+H+L
Sbjct:   664 ETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIRHIL 723

Query:   941 NVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAE 1000
             NV++E+R E L +++ WM+ER L       A ++++++ L A LV AF + D  TRQ+AE
Sbjct:   724 NVLRENRTERLTRRAVWMVERILRI--EDIAREVAEEQSLSAALVDAFQNADFRTRQIAE 781

Query:  1001 KILRHLNKMPNFSA 1014
               L+H++K+PNFS+
Sbjct:   782 NALKHIDKIPNFSS 795
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0010115 "regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0010150 "leaf senescence" evidence=IMP
GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP
GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP
GO:0090359 "negative regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195563 PUB19 "plant U-box 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CAA7PUB42_ARATH6, ., 3, ., 2, ., -0.53940.93420.9215yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021163001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (974 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1019
smart0050463 smart00504, Ubox, Modified RING finger domain 7e-16
pfam0456473 pfam04564, U-box, U-box domain 2e-11
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-07
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 8e-04
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 8e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 0.001
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 0.001
pfam1344555 pfam13445, zf-RING_LisH, RING-type zinc-finger, Li 0.001
smart0018541 smart00185, ARM, Armadillo/beta-catenin-like repea 0.003
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain Back     alignment and domain information 
 Score = 72.3 bits (178), Expect = 7e-16
 Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
           F CP++ E+M DPV + SG TYER+AI  W            P TG+ L    L  N+AL
Sbjct: 2   FLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-----HGTDPVTGQPLTHEDLIPNLAL 56

Query: 294 KTTIEEW 300
           K+ I+EW
Sbjct: 57  KSAIQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63
>gnl|CDD|203049 pfam04564, U-box, U-box domain Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif Back     alignment and domain information
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1019
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.96
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.95
PF05804708 KAP: Kinesin-associated protein (KAP) 99.94
PF05804708 KAP: Kinesin-associated protein (KAP) 99.9
KOG1048717 consensus Neural adherens junction protein Plakoph 99.88
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 99.81
KOG1048717 consensus Neural adherens junction protein Plakoph 99.74
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.63
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.63
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.62
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.61
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.6
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.58
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.52
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.5
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.49
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.47
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.47
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.44
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.39
PRK09687280 putative lyase; Provisional 99.37
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.35
KOG1293 678 consensus Proteins containing armadillo/beta-caten 99.32
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.31
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.3
PRK09687280 putative lyase; Provisional 99.25
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.25
KOG1293678 consensus Proteins containing armadillo/beta-caten 99.24
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.23
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.2
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 99.04
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 99.0
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.99
PTZ00429 746 beta-adaptin; Provisional 98.96
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.94
PTZ00429 746 beta-adaptin; Provisional 98.94
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 98.88
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.87
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.85
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.81
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.8
KOG01681051 consensus Putative ubiquitin fusion degradation pr 98.72
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 98.66
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.66
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.65
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.57
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.56
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.56
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.5
PF05536543 Neurochondrin: Neurochondrin 98.49
TIGR02270410 conserved hypothetical protein. Members are found 98.45
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.44
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.44
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.42
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 98.41
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.36
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.34
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.31
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.3
KOG0287442 consensus Postreplication repair protein RAD18 [Re 98.3
KOG18241233 consensus TATA-binding protein-interacting protein 98.29
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.29
KOG3678832 consensus SARM protein (with sterile alpha and arm 98.27
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 98.24
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.22
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.21
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.17
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.16
PHA02929238 N1R/p28-like protein; Provisional 98.16
PF05536543 Neurochondrin: Neurochondrin 98.16
KOG2042943 consensus Ubiquitin fusion degradation protein-2 [ 98.11
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.08
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.06
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.04
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.01
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.99
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 97.98
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.96
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.93
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.93
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.9
KOG3678 832 consensus SARM protein (with sterile alpha and arm 97.88
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.88
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 97.88
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.87
TIGR02270410 conserved hypothetical protein. Members are found 97.86
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 97.85
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 97.85
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.84
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.83
PHA02926242 zinc finger-like protein; Provisional 97.82
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.73
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.73
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.73
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.73
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.72
KOG2973353 consensus Uncharacterized conserved protein [Funct 97.71
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.7
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.69
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.67
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.66
KOG1242569 consensus Protein containing adaptin N-terminal re 97.65
COG5113929 UFD2 Ubiquitin fusion degradation protein 2 [Postt 97.65
KOG1242569 consensus Protein containing adaptin N-terminal re 97.63
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.58
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.57
KOG4646173 consensus Uncharacterized conserved protein, conta 97.57
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.56
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.56
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.52
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.51
KOG4646173 consensus Uncharacterized conserved protein, conta 97.43
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.42
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.38
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.35
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.34
KOG2734536 consensus Uncharacterized conserved protein [Funct 97.33
PF1463444 zf-RING_5: zinc-RING finger domain 97.32
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.31
KOG2734536 consensus Uncharacterized conserved protein [Funct 97.29
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.28
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.25
KOG0289506 consensus mRNA splicing factor [General function p 97.19
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.1
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.1
KOG2660331 consensus Locus-specific chromosome binding protei 97.09
COG5369743 Uncharacterized conserved protein [Function unknow 97.08
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.07
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.07
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 97.0
KOG0297391 consensus TNF receptor-associated factor [Signal t 96.89
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.86
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 96.86
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.82
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.81
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.8
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.76
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.74
KOG0567289 consensus HEAT repeat-containing protein [General 96.73
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 96.69
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.69
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.67
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.66
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 96.47
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.46
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.39
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.39
COG5222427 Uncharacterized conserved protein, contains RING Z 96.35
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 96.27
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 96.27
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.19
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 95.85
COG5152259 Uncharacterized conserved protein, contains RING a 95.79
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 95.74
KOG1002791 consensus Nucleotide excision repair protein RAD16 95.72
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 95.65
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 95.57
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 95.57
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 95.47
PF04641260 Rtf2: Rtf2 RING-finger 95.42
PF05659147 RPW8: Arabidopsis broad-spectrum mildew resistance 95.39
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 95.31
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.31
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.24
KOG3039303 consensus Uncharacterized conserved protein [Funct 95.2
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.16
COG5369743 Uncharacterized conserved protein [Function unknow 95.09
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 94.92
KOG0567289 consensus HEAT repeat-containing protein [General 94.88
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 94.8
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.67
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 94.6
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 94.44
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.44
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 94.36
KOG3036293 consensus Protein involved in cell differentiation 94.34
KOG4367699 consensus Predicted Zn-finger protein [Function un 94.31
COG5096757 Vesicle coat complex, various subunits [Intracellu 94.28
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 94.26
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.24
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 94.2
PF11841160 DUF3361: Domain of unknown function (DUF3361) 94.03
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 94.02
PF11841160 DUF3361: Domain of unknown function (DUF3361) 94.0
KOG3036293 consensus Protein involved in cell differentiation 93.95
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 93.94
PF13764802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 93.89
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 93.89
PF05004309 IFRD: Interferon-related developmental regulator ( 93.87
PF08045257 CDC14: Cell division control protein 14, SIN compo 93.73
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 93.72
KOG3113293 consensus Uncharacterized conserved protein [Funct 93.57
PF05004309 IFRD: Interferon-related developmental regulator ( 93.51
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 93.5
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 93.45
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 93.45
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 93.32
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 93.08
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.02
KOG2611698 consensus Neurochondrin/leucine-rich protein (Neur 93.02
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 92.97
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 92.78
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 92.65
KOG3039303 consensus Uncharacterized conserved protein [Funct 92.63
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 92.48
PRK14707 2710 hypothetical protein; Provisional 92.36
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 91.87
COG5096757 Vesicle coat complex, various subunits [Intracellu 91.66
KOG2979262 consensus Protein involved in DNA repair [General 91.66
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 91.61
KOG2611698 consensus Neurochondrin/leucine-rich protein (Neur 91.58
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 91.32
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 91.23
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 91.23
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.18
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 90.5
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 90.32
KOG2999713 consensus Regulator of Rac1, required for phagocyt 90.32
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 90.18
PF07814361 WAPL: Wings apart-like protein regulation of heter 89.93
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 89.76
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 89.65
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 89.26
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 89.0
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 88.28
PF11701157 UNC45-central: Myosin-binding striated muscle asse 88.26
PF11701157 UNC45-central: Myosin-binding striated muscle asse 87.96
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 87.8
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 87.8
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 87.74
KOG22741005 consensus Predicted importin 9 [Intracellular traf 87.69
KOG2025 892 consensus Chromosome condensation complex Condensi 87.63
KOG2062929 consensus 26S proteasome regulatory complex, subun 87.13
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 86.89
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 86.82
KOG12481176 consensus Uncharacterized conserved protein [Funct 86.79
PF08045257 CDC14: Cell division control protein 14, SIN compo 86.5
KOG0825 1134 consensus PHD Zn-finger protein [General function 86.47
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 86.33
KOG2999713 consensus Regulator of Rac1, required for phagocyt 85.84
KOG04141251 consensus Chromosome condensation complex Condensi 85.62
KOG3800300 consensus Predicted E3 ubiquitin ligase containing 85.44
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 85.42
KOG0827465 consensus Predicted E3 ubiquitin ligase [Posttrans 85.32
KOG3161861 consensus Predicted E3 ubiquitin ligase [Posttrans 84.91
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 84.28
KOG2025 892 consensus Chromosome condensation complex Condensi 83.77
KOG0396389 consensus Uncharacterized conserved protein [Funct 83.75
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 82.65
PF07814361 WAPL: Wings apart-like protein regulation of heter 82.37
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 82.35
KOG4535728 consensus HEAT and armadillo repeat-containing pro 82.3
KOG22741005 consensus Predicted importin 9 [Intracellular traf 82.09
KOG4464532 consensus Signaling protein RIC-8/synembryn (regul 82.08
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 82.04
COG5209315 RCD1 Uncharacterized protein involved in cell diff 81.91
PF08324268 PUL: PUL domain; InterPro: IPR013535 The PUL (afte 81.85
KOG12481176 consensus Uncharacterized conserved protein [Funct 81.6
KOG2956516 consensus CLIP-associating protein [General functi 81.55
KOG2062929 consensus 26S proteasome regulatory complex, subun 81.4
COG5109396 Uncharacterized conserved protein, contains RING Z 81.02
PF12031257 DUF3518: Domain of unknown function (DUF3518); Int 80.64
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 80.12
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-55  Score=555.00  Aligned_cols=634  Identities=18%  Similarity=0.167  Sum_probs=518.4

Q ss_pred             CCHHHHHHHHHHHHHHHhcccccchHHHh-cCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHH
Q 001733          320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRN-VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI  398 (1019)
Q Consensus       320 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv  398 (1019)
                      ++++++.+|+.+|+.+++++++||..|++ .|+||.|+.+|.+++..+|++|+.+|.+++ .++++|..|+..|+||+|+
T Consensus        27 ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS-~~e~nk~~Iv~~GaIppLV  105 (2102)
T PLN03200         27 SSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLC-KEEDLRVKVLLGGCIPPLL  105 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHcCChHHHH
Confidence            35788999999999999999999999986 899999999999999999999999999998 7789999999999999999


Q ss_pred             HHhcCCChhHHHHHHHHHHHhccC---hhhhhhhhcccchHHHHHHhhhcCCC-ChHHHHHHHHHHHHhcCCCCchH-HH
Q 001733          399 KLLSSSHRPVRHESLLLLLELSST---RSLCEKIGSIPGGILVLITFKFNWSI-DVFAAEIADQILRNLERNPDNIK-CM  473 (1019)
Q Consensus       399 ~lL~~~~~~~r~~Aa~~L~~Ls~~---~~~~~~i~~~~g~I~~LV~lL~~~~~-~~~~~~~A~~aL~nLs~~~~n~~-~i  473 (1019)
                      .+|++++++.|++|+.+|++|+.+   +.++..|+...|+||+|+.++++++. +..+++.|+.+|+||+.+++|+. .+
T Consensus       106 ~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~I  185 (2102)
T PLN03200        106 SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSAT  185 (2102)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHH
Confidence            999999999999999999999987   45666777779999999999975432 33456778899999999999985 45


Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-ccccccccc-chHHHHHHHHhcCC-hHHHHHHHHHHHHhhcCC-c
Q 001733          474 AENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG-HDSKINVPG-RAASTLIRMVHSGN-SLTRRIAFKALMQISSHH-P  549 (1019)
Q Consensus       474 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~i~~-~~i~~Lv~lL~~~~-~~~~~~A~~aL~~Ls~~~-~  549 (1019)
                      +++|+||.|+.+|.++++..+.+++++|.+++.+ ++++..+.+ |++|.|+++|++++ +.++++|+++|.+|++++ +
T Consensus       186 IeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e  265 (2102)
T PLN03200        186 LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE  265 (2102)
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence            8999999999999999999999999999998875 668888876 68999999998764 589999999999999875 5


Q ss_pred             chHHHHHcCcHHHHHHHHhhhccCC----CChhHHHHHHHHHHHHHhcCCC-----------ccc---------------
Q 001733          550 SCKILVEAGIVQVMAEEMFIRIIHN----EPMNSKEEAAAILANILESGLE-----------HHS---------------  599 (1019)
Q Consensus       550 ~~~~l~~~G~v~~Lv~lL~~~~~~~----~~~~~~~~A~~~L~~L~~~~~~-----------~~~---------------  599 (1019)
                      +++.+++.|++++|++++.....++    .+..++++|.|+|.|||.+...           .+.               
T Consensus       266 ~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll  345 (2102)
T PLN03200        266 AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYAL  345 (2102)
T ss_pred             HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHH
Confidence            6999999999999999987433110    1236799999999999984211           000               


Q ss_pred             ---------c-cccc--------------c---------------------CcccchhhhHHHHHHHHcCCCCHHHHHHH
Q 001733          600 ---------L-QVNS--------------H---------------------GHTMVSDYVVYNIIYMLKNSTPDELNVHL  634 (1019)
Q Consensus       600 ---------~-~v~~--------------~---------------------g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a  634 (1019)
                               . .+++              +                     .+.+...++++.|+.||.. ++.++|..+
T Consensus       346 ~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~-~~~evQ~~A  424 (2102)
T PLN03200        346 MVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITM-ATADVQEEL  424 (2102)
T ss_pred             HhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhcc-CCHHHHHHH
Confidence                     0 0000              0                     0012233556677788887 788999999


Q ss_pred             HHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCC
Q 001733          635 IRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTE  714 (1019)
Q Consensus       635 ~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~  714 (1019)
                      +++|+.+|.++   .+.++.|.+.|+++.|+++|.+++..+|..|+++|++|+...++.....+.  +|+|++|+++|.+
T Consensus       425 v~aL~~L~~~~---~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--aGaIP~LV~LL~s  499 (2102)
T PLN03200        425 IRALSSLCCGK---GGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA--AGGIPPLVQLLET  499 (2102)
T ss_pred             HHHHHHHhCCC---HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcC
Confidence            99999999865   356788999999999999999999999999999999999654433333333  6999999999987


Q ss_pred             CCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCc----------------------------
Q 001733          715 TIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRT----------------------------  766 (1019)
Q Consensus       715 ~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~----------------------------  766 (1019)
                      ++  .+++..|+++|+|++.++.+.+..+.++|+++.|+++|.+.   ..+.                            
T Consensus       500 ~~--~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl  574 (2102)
T PLN03200        500 GS--QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADAATISQLTALLL  574 (2102)
T ss_pred             CC--HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            75  69999999999999987767766666899999999998742   1000                            


Q ss_pred             --------------------------------------------cchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCc
Q 001733          767 --------------------------------------------SRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNF  802 (1019)
Q Consensus       767 --------------------------------------------~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~  802 (1019)
                                                                  ......+++.++++|.+++.+  ++++.+.+.+.|+
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~~d~~~avv~aga  652 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--RQDLCESLATDEI  652 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCC
Confidence                                                        001223556677778888775  7777888899999


Q ss_pred             hHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCcc
Q 001733          803 TSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNT  882 (1019)
Q Consensus       803 i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~  882 (1019)
                      +|+|+.+|++ ++.++++.|||+|.|++.+...                                            .+.
T Consensus       653 IpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~--------------------------------------------~q~  687 (2102)
T PLN03200        653 INPCIKLLTN-NTEAVATQSARALAALSRSIKE--------------------------------------------NRK  687 (2102)
T ss_pred             HHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCH--------------------------------------------HHH
Confidence            9999999999 9999999999999999864410                                            122


Q ss_pred             chhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHH
Q 001733          883 FCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERF  962 (1019)
Q Consensus       883 ~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i  962 (1019)
                      ..++++|+|+||+++|.+.|.++++.|+.||.+++.+++    +...+.+.|+|++|+++|+ ++++..++.|+|+|.++
T Consensus       688 ~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e----~~~ei~~~~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~L  762 (2102)
T PLN03200        688 VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE----VAAEALAEDIILPLTRVLR-EGTLEGKRNAARALAQL  762 (2102)
T ss_pred             HHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch----HHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999876    5566778899999999998 89999999999999999


Q ss_pred             HhhCCccc-cccccccccchHHHHHHhhcCCchhhHH--HHHHHHHhccCCCCCCCCC
Q 001733          963 LVKGGNKQ-ASDISQDRLLPATLVSAFHHGDVNTRQM--AEKILRHLNKMPNFSASTY 1017 (1019)
Q Consensus       963 ~~~~~~~~-~~~~~~~~~~~~~Lv~ll~~~~~~~~~~--Aa~~L~~L~~~~~~s~~~~ 1017 (1019)
                      ++....+. ...+....+.+.+|+++|...|......  |..+|+.|.+....+..+|
T Consensus       763 ~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~  820 (2102)
T PLN03200        763 LKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSH  820 (2102)
T ss_pred             HhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCC
Confidence            98743333 2244444556677999999999877776  9999999999865555443

>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1019
1t1h_A78 Nmr Solution Structure Of The U Box Domain From Atp 3e-09
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 8e-04
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 Back     alignment and structure 
Iteration: 1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
           E F CP++ E+M DPV + +G TYER++I  W +    +G   CP + + L+  GL  N 
Sbjct: 7   EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----AGHKTCPKSQETLLHAGLTPNY 62
Query: 292 ALKTTIEEWKDRNDAE 307
            LK+ I  W + N  E
Sbjct: 63  VLKSLIALWCESNGIE 78
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1019
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-27
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-27
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 9e-23
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-21
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-07
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-27
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 7e-27
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-25
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 1e-26
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-26
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-25
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-21
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-21
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-19
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-12
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-06
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-06
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-22
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-18
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 6e-12
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-05
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 6e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-21
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 4e-18
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 7e-11
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 4e-05
2f42_A179 STIP1 homology and U-box containing protein 1; cha 8e-21
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 3e-19
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 8e-16
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 3e-13
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 4e-10
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 3e-04
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 1e-18
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-18
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 5e-15
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-08
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-05
3nmz_A458 APC variant protein; protein-protein complex, arma 3e-18
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-11
3nmz_A458 APC variant protein; protein-protein complex, arma 7e-09
3nmz_A458 APC variant protein; protein-protein complex, arma 6e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-06
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 8e-18
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-17
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-11
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-10
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 9e-04
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 1e-17
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-05
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 5e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-17
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 9e-06
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 3e-05
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 2e-17
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 4e-17
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 2e-15
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 6e-15
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 5e-12
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 8e-15
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-10
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 6e-09
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-13
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 4e-10
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 5e-08
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 8e-13
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 2e-10
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 3e-10
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-08
3grl_A651 General vesicular transport factor P115; vesicle t 2e-09
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 3e-09
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 7e-09
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 6e-08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-05
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 2e-07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 9e-06
1z6u_A150 NP95-like ring finger protein isoform B; structura 3e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 6e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-04
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
 Score =  119 bits (299), Expect = 1e-27
 Identities = 62/432 (14%), Positives = 149/432 (34%), Gaps = 25/432 (5%)

Query: 303 RNDAERIKVSRAA---------LSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLP 353
           + +A R  + R+          +               L  +   ++   + +   G +P
Sbjct: 179 KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIP 237

Query: 354 LLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESL 413
            L  +L     +V   A+  L  L++  +  K  +     +  ++ LL+ ++      + 
Sbjct: 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 297

Query: 414 LLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCM 473
             L  L+      + I    GG   L+     ++ +        ++L+ L     N   +
Sbjct: 298 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT-TSRVLKVLSVCSSNKPAI 356

Query: 474 AENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLT 533
            E G ++ L  HL + S+ +       L  +      +  + G    TL++++ S +   
Sbjct: 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG-LLGTLVQLLGSDDINV 415

Query: 534 RRIAFKALMQISSHHPSCKILV-EAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILE 592
              A   L  ++ ++   K++V + G ++ +   +   +   +  +  E A   L ++  
Sbjct: 416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV---LRAGDREDITEPAICALRHLT- 471

Query: 593 SGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIV 652
           S  +   +  N+    +   Y +  ++ +L   +   L    + +++ L   P   A + 
Sbjct: 472 SRHQDAEMAQNA----VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 527

Query: 653 SVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCP 712
               E  A   L++++   H +         T      G  + E +    G    L +  
Sbjct: 528 ----EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583

Query: 713 TETIHITEKQAV 724
              I I     +
Sbjct: 584 HNRIVIRGLNTI 595
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1019
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 1e-14
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 4e-09
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-08
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 6e-13
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-12
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-12
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-11
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 0.003
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 2e-09
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 2e-08
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 2e-06
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 2e-08
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 0.002
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 7e-08
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 3e-07
d1wgma_98 g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu 6e-07
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-06
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 6e-06
d1lrva_233 a.118.1.5 (A:) Leucine-rich repeat variant {Azotob 1e-04
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (184), Expect = 1e-14
 Identities = 66/530 (12%), Positives = 166/530 (31%), Gaps = 19/530 (3%)

Query: 390 ETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSID 449
            T  I  L KLL+   + V +++ +++ +LS   +    I   P  +  ++      + D
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT-MQNTND 73

Query: 450 VFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHD 509
           V  A      L NL  + + +  + ++G +  L+  L    + +     + L  ++L  +
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 510 SKINVP--GRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEM 567
                         ++ +++  N     I    L  ++  +   K++    I+     + 
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI----ILASGGPQA 189

Query: 568 FIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTP 627
            + I+            + +  +L     +    V + G   +  ++      +++N   
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249

Query: 628 DELNV-HLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTL 686
              N+       + +      +  ++        + +   + N   +      +      
Sbjct: 250 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309

Query: 687 SPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSAR 746
              L  T++    +       +      T    E +    +   +L +    +   L   
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA--QNAVRLHYGLPVVVKLLHPP 367

Query: 747 NVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVF 806
           +  P I  T+ LI+      + +A    +G I  LV+     ++      +         
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 427

Query: 807 TELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKS 866
             + M    +E+ +     L  L+ +  N      I+    +      + L       + 
Sbjct: 428 EGVRM----EEIVEGCTGALHILARDVHNRI---VIRGLNTIP--LFVQLLYSPIENIQR 478

Query: 867 VSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTL 916
           V+   +   A   +    +    A   L   L+  N  V   A + L  +
Sbjct: 479 VAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1019
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.94
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.93
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.84
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.83
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.82
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.8
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.75
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.75
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.73
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.73
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.72
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.66
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.55
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.5
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.44
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.42
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.38
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.37
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.31
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.27
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.23
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 99.19
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 99.17
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.12
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 99.04
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.84
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.53
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.5
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.34
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.28
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.16
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.09
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.99
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.78
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.77
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.73
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.47
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 97.39
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.86
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.68
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.45
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.03
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.29
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.38
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 93.54
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 92.63
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=348.33  Aligned_cols=453  Identities=16%  Similarity=0.144  Sum_probs=352.9

Q ss_pred             HCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-CCCHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHH
Q ss_conf             1389588999730399999999999997310279367999882-0979999997427-9926899999999973059045
Q 001733          348 NVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAE-TMDISILIKLLSS-SHRPVRHESLLLLLELSSTRSL  425 (1019)
Q Consensus       348 ~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~-~g~I~~Lv~lL~~-~~~~~r~~A~~~L~~Ls~~~~~  425 (1019)
                      ..++||.|+++|++.|..++..|+.++.+++ .++..+..++. .|+++.++++|++ ++.+.++.|+.+|.+++.+++.
T Consensus        15 ~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~-~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (529)
T d1jdha_          15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLS-KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf             9979999999872999999999999999998-455778999871339999999984799999999999999999589166


Q ss_pred             HHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             6563115642789998631278782899999999998107998-357898359759999985259999999999999996
Q 001733          426 CEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD-NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEI  504 (1019)
Q Consensus       426 ~~~i~~~~g~I~~Lv~lL~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~L  504 (1019)
                      +..+.. .|+|+.|+.+|.  +++++++..|+.+|.|++.+.+ .+..+.+.|++|+|+.+|.++++.++..++.+|.++
T Consensus        94 ~~~i~~-~g~i~~Li~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l  170 (529)
T d1jdha_          94 LLAIFK-SGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHH-TTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-CCCHHHHHHHHC--CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             999998-798999999857--97989999999999986513201136787658814899988705768888889999887


Q ss_pred             CCC-CCCCCCCCC-CHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf             059-554201002-2199999997059-9688999999999951699436999984939999999951215999936899
Q 001733          505 VLG-HDSKINVPG-RAASTLIRMVHSG-NSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKE  581 (1019)
Q Consensus       505 a~~-~~~~~~i~~-~~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~~~~~l~~~G~i~~Lv~lL~~~~~~~~~~~~~~  581 (1019)
                      +.. .+.+..+.. +++++|+.+++.. ....++.++.++.+++.+.+++..+++.|++++|+.++...     +.+.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~-----~~~~~~  245 (529)
T d1jdha_         171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-----SQRLVQ  245 (529)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-----CHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-----CHHHHH
T ss_conf             630047888887605636899999861048999999998751101332330456543334699986254-----015553


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
Q ss_conf             99999999972398755432356675200232499999997179997999999999999727999617899999976993
Q 001733          582 EAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEAS  661 (1019)
Q Consensus       582 ~A~~~L~~La~~~~~~~~~~v~~~g~~l~~~~~i~~Li~LL~~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~i~e~g~i  661 (1019)
                      .++++|.+++......           ....+.++.|+.++.+ +++.++..++++|++++...   ...+..+.+.+++
T Consensus       246 ~a~~~l~~ls~~~~~~-----------~~~~~~i~~Lv~ll~~-~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~~~i  310 (529)
T d1jdha_         246 NCLWTLRNLSDAATKQ-----------EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNN---YKNKMMVCQVGGI  310 (529)
T ss_dssp             HHHHHHHHHHTTCTTC-----------SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTC---HHHHHHHHHTTHH
T ss_pred             HHHHHHHHCCCCCCCH-----------HHHHHCCHHHHHHCCC-CCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHH
T ss_conf             0156777504321102-----------5664010144541245-42889999999887501220---3788888875007


Q ss_pred             HHHHHHHC--CCCHHHHHHHHHHHHHHCCCCC-HHH-HHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf             89998634--9998999999999997286789-358-8986422799067540357888675999999999940589993
Q 001733          662 YSLLEVIN--NPHDELAVAAIKLLTTLSPYLG-HTL-VERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNL  737 (1019)
Q Consensus       662 ~~Lv~lL~--~~~~~vr~~A~~~L~~Ls~~~~-~~~-~~~l~~~~~~i~~Lv~lL~~~~~~~~~~~~A~~iL~nL~~~~~  737 (1019)
                      +.|+.++.  +++++++..++++|.+++.... .+. ...+.. .++++.|+.++...+ ....+..+++++.|+.. +.
T Consensus       311 ~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~-~~~l~~L~~ll~~~~-~~~~~~~~~~~l~~l~~-~~  387 (529)
T d1jdha_         311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL-CP  387 (529)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHTT-SG
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH-CCCCHHHHHHHHCCC-HHHHHHHHHHHHHHCCH-HH
T ss_conf             8999999840011137889998850022000000035666776-456124789871531-27899999998750000-35


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHCCCCC------------CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
Q ss_conf             6589988089947999999854106777------------6201433788899999987157876448999982895499
Q 001733          738 TLNLALSARNVVPTILQTINLIQRSGTR------------TSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSV  805 (1019)
Q Consensus       738 ~~~~~L~~~g~i~~Lv~lL~~~~~~~~~------------~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~i~~~g~ip~  805 (1019)
                      .....+.+.|+++.++++|.+...+..+            .......+.+..+++|..++.   ++..+..+.+.|+++.
T Consensus       388 ~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~---~~~~r~~~~~~~~i~~  464 (529)
T d1jdha_         388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR---DVHNRIVIRGLNTIPL  464 (529)
T ss_dssp             GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT---SHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---CHHHHHHHHHCCCHHH
T ss_conf             6666665326579999998667889999998603467764121319999999999999844---9888999997888999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf             99997217939999999999731101
Q 001733          806 FTELLMKTSCDEVQKLAAIGLENLSS  831 (1019)
Q Consensus       806 Lv~LL~~~~~~~vk~~AA~aL~~Ls~  831 (1019)
                      |+++|.+ +++.+++.|+++|++|+.
T Consensus       465 Lv~lL~~-~~~~v~~~a~~aL~~L~~  489 (529)
T d1jdha_         465 FVQLLYS-PIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             HHHGGGC-SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHCC-CCHHHHHHHHHHHHHHHC
T ss_conf             9998679-998999999999999865
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure