Citrus Sinensis ID: 001800

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010-

MIRNSERARENRVDRNDQPSTQLPLLRDLLKKRSMPQDNEERNNGLDVASKRVRYGPNNHLAMSAQMNESWQDSVSVNGVSPSVPLLDSDLNPVEQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVTRQIGSLSSPAQVVVLPSQINTMQSSLLTAQVQLPSSVAAISSSLSDTATGNTSATDSKRDPRRDPRRLDPRRVATPVGVPSISTTEDAGPVQSEFDDSSSITRPPSLDITTSAENLPAPLMTSAKSDDMTFESPSVCKMDQPNAEEGLSRSEEIVTLPEVCASSDHRISSRAVDEDSAVVELSDVEVYGTSTSSLVESDQHTSAVSNASAWEETCKDLPPLPLFVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHSSNLECSQSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQPSLKSSIPRSILAVLGLANESHMQQLHISSLNPSDTGSSEHGATPT

cccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEHHHccccccHHHHHHcccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccccccc

cccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccHHHHHccccccccccccccHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccHccccccccccHHccccccccccccccHHccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHcccccHHHcccccccccccccccccccHccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccEEEEEHcccccHHHHHHHcHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHEHHcccHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccHHccccccccccccccccc

mirnserarenrvdrndqpstqlPLLRDLLkkrsmpqdneernngldvaskrvrygpnnhlaMSAQMneswqdsvsvngvspsvplldsdlnPVEQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNmkhlhktpppltrlgnlpvtrqigslsspaqvvvlpsQINTMQSSLLTAQVQLPSSVAAISsslsdtatgntsatdskrdprrdprrldprrvatpvgvpsisttedagpvqsefddsssitrppsldittsaenlpaplmtsaksddmtfespsvckmdqpnaeeglsrseeivtlpevcassdhrissravdedsavVELSDVEvygtstsslvesdqhtsavsnasaweetckdlpplplfvelTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMisssnensSYAAAVYEKLLLAVAKSLLdtfpasdksfsrllgevpvlpdSVLQLLGNLCssavfdlhgkevrdgervtqGLGAVWSLilgrpyyrQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNqhssnlecsqsdsadlkaegevgsqetsisgsqvsepgtfemdsvkggqpishslstisfpeAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLhiisdppqgseNLLTLVLQILTqettpssdlIATVKHLYETKLKDATILIPmlssltknevlpifprlvdlpLEKFQMALAHILQgsahtgpaltPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMvdqtplplLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKcvsqtrphsfpvllklpppqleSALNKYANlrgplatyasqpslkssipRSILAVLGLANESHMQQLhisslnpsdtgssehgatpt

mirnserarenrvdrndqpstqlplLRDLLKkrsmpqdneernngldvaskRVRYGPNNHLAMSAQMNESWQDSVSVNGVSPSVPLLDSDLNPVEQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVTRQIGSLSSPAQVVVLPSQINTMQSSLLTAQVQLPSSVAAIssslsdtatgntsatdskrdprrdprrldprrvatpvgvpsisttedagpvqsefddsssitrpPSLDITTSAENLPAPLMTSAKSDDMTFESPSVCKMDQPNAEEGLSRSEEIVTLPEVcassdhrissravdedsavVELSDVEVYGTStsslvesdqhTSAVSNASAWEETCKDLPPLPLFVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHSSNLECSQSDSADLKAEGEVGsqetsisgsqvsepGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATyasqpslkssIPRSILAVLGLANESHMQQLHIsslnpsdtgssehgatpt

MIRNSERARENRVDRNDQPSTQLPLLRDLLKKRSMPQDNEERNNGLDVASKRVRYGPNNHLAMSAQMNESWQDsvsvngvspsvpLLDSDLNPVEQMIAMIaallaegergaeslellISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVTRQIGSLSSPAQVVVLPSQINTMQSSLLTAQVQLPssvaaissslsDTATGNTSATDSKrdprrdprrldprrVATPVGVPSISTTEDAGPVQSEFDDSSSITRPPSLDITTSAENLPAPLMTSAKSDDMTFESPSVCKMDQPNAEEGLSRSEEIVTLPEVCASSDHRISSRAVDEDSAVVELSDVEVYGTSTSSLVESDQHTSAVSNASAWEETCKDLPPLPLFVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMIsssnenssYAAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHSSNLECSQSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQPSLKSSIPRSILAVLGLANESHMQQLHISSLNPSDTGSSEHGATPT

*****************************************************************************************DLNPVEQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNMKHLHKT***LTRLGNLPVTRQIG******QVVVLP**************************************************************************************************************************************************************************************************WEETCKDLPPLPLFVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLS************************************************************ISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPP*****ALNKYANLRGPLATY************SILAVLGL*****************************

*****************************************************************************************************************************LLADIVIS*************************************************************************************************************************************************************************************************************************************************************KSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISS*******AAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVF********DGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSA***********************************************************ISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAH*************PVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYA************************************************

******************PSTQLPLLRDLLKKRS*********NGLDVASKRVRYGPNNHLAMSAQMNESWQDSVSVNGVSPSVPLLDSDLNPVEQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVTRQIGSLSSPAQVVVLPSQINTMQSSLLTAQVQLPSSVAAIS************************RRLDPRRVATPVGVPSI*******************TRPPSLDITTSAENLPAPLMTSAKSDDMTFESPSVCKMDQPNAEEGLSRSEEIVTLPEVCASSDHRISSRAVDEDSAVVELSDVEVYGTSTSS***************AWEETCKDLPPLPLFVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQ**********************************EPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQPSLKSSIPRSILAVLGLANESHMQQLHISS****************

*********ENRVDRNDQPSTQLPLLRDLLKKRSMPQDNEERNNGLDVASKRVRYGPNNH***************SVNGVSPSVPLLDSDLNPVEQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVTRQIGSLSSPAQVVVLPSQINTMQSSL****************************************************************VQSEFDDSSSITRPPSLDITTSAENLPAPLMTSAKSDDMTFESPSVCKM**********************************************************************AWEETCKDLPPLPLFVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVF*****EVRDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQH*S**E*******D******************************************ISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQPSLKSSIPRS*****GL*****************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1011	2.2.26 [Sep-21-2011]
Q80X82		1284	Symplekin OS=Mus musculus	yes	no	0.530	0.417	0.288	5e-66
Q92797		1274	Symplekin OS=Homo sapiens	yes	no	0.525	0.416	0.294	1e-65
Q7ZYV9		1202	Symplekin OS=Xenopus laev	N/A	no	0.530	0.445	0.309	1e-62

>sp\|Q80X82\|SYMPK_MOUSE Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1	Back alignment and function desciption

 Score =  253 bits (647), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 176/610 (28%), Positives = 309/610 (50%), Gaps = 74/610 (12%)

Query: 381  LTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDA--DEDIVMMLQKYV 438
            LT+ + ++++  AV+RI  + K +  +  +Q R+ +LA L+ Q D+    +++  + + V
Sbjct: 553  LTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGFKAEVLSFILEDV 612

Query: 439  VANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKS 498
             A        +L    LY   +  +++    +S     YE  L+ +   L +     D  
Sbjct: 613  RARL------DLAFAWLYQEYNAYLAA---GTSGTLDKYEDCLICLLSGLQEKPDQKDGI 663

Query: 499  FSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQ 558
            F++++ E P++ +S L+++   C             D  R   G+  +  LI  RP  + 
Sbjct: 664  FTKVVLEAPLITESALEVIRKYCE------------DESRAYLGMSTLGDLIFKRPSRQF 711

Query: 559  ACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHS-SNLE 617
              L + L  ++H +D +R++A+  +  ++Y+   + E +E++A N +   V+ +  S L 
Sbjct: 712  QYLHVLLDLSSHEKDRVRSQALLFI-KRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLF 770

Query: 618  CSQSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLT 677
             +  D+                   +V+ P T E                      ++  
Sbjct: 771  GADKDT-------------------EVAAPWTEET--------------------VKQCL 791

Query: 678  SLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQG 737
             L+ AL  +  +L+  +   Y +A   +K+   R I   IR +G +  ELL ++ + P+G
Sbjct: 792  YLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKG 851

Query: 738  SENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLV 797
            +E L+T  L  LT +  PS +L+  V+ LY  +L D   LIP+L+ L K EV+   P+L+
Sbjct: 852  AETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLI 911

Query: 798  DL-PL---EKFQMALA-HILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSA 852
             L P+   E F   L     +G++   P L P E+L+A+H+I  +     +K I  A + 
Sbjct: 912  KLNPIVVKEVFNRLLGTQHGEGNSALSP-LNPGELLIALHNI--DSVKCDMKSIIKATNL 968

Query: 853  CFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQV 912
            CF +R V+T +VLA  + Q+++Q+PLP+L MRTVIQ++  +P L  FVM IL++L+ KQV
Sbjct: 969  CFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILARLIMKQV 1028

Query: 913  WRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQ--PSLKS 970
            W+ PK+W GF+KC  +T+P SF V+L+LPP QL +  +K   LR PL  +     P  ++
Sbjct: 1029 WKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQA 1088

Query: 971  SIPRSILAVL 980
             IP SI+ +L
Sbjct: 1089 HIPNSIMTIL 1098

Heat-labile component of a multimolecular complex that function in histone mRNA 3'-end processing. Specific component of the tight junction (TJ) plaque, but might not be an exclusively junctional component. May have a house-keeping rule. May be required for pre-mRNA polyadenylation.
Mus musculus (taxid: 10090)

>sp\|Q92797\|SYMPK_HUMAN Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2	Back alignment and function description

>sp\|Q7ZYV9\|SYMPK_XENLA Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1011
255537870		1390	conserved hypothetical protein [Ricinus	0.980	0.712	0.689	0.0
225458984		1037	PREDICTED: symplekin-like [Vitis vinifer	0.973	0.948	0.659	0.0
356510080		1030	PREDICTED: symplekin-like [Glycine max]	0.973	0.955	0.627	0.0
356518392		1103	PREDICTED: uncharacterized protein LOC10	0.957	0.877	0.622	0.0
449437266		1095	PREDICTED: uncharacterized protein LOC10	0.950	0.877	0.609	0.0
302142116		1063	unnamed protein product [Vitis vinifera]	0.805	0.765	0.683	0.0
145336172		961	symplekin [Arabidopsis thaliana] gi\|1107	0.932	0.981	0.552	0.0
6693013		1092	T22C5.3 [Arabidopsis thaliana]	0.908	0.840	0.490	0.0
414880870		1153	TPA: hypothetical protein ZEAMMB73_98242	0.956	0.838	0.467	0.0
222619097		1255	hypothetical protein OsJ_03106 [Oryza sa	0.927	0.747	0.449	0.0

>gi\|255537870\|ref\|XP_002510000.1\| conserved hypothetical protein [Ricinus communis] gi\|223550701\|gb\|EEF52187.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1291 bits (3342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1006 (68%), Positives = 816/1006 (81%), Gaps = 15/1006 (1%)

Query: 1    MIRNSERA-RENRVDRND--QPSTQLPLLRDLLKKRSMPQDNEERNNGLDVASKRVRYGP 57
            MI+N+ERA RE+RV R    QPS       D L+KRS+P D+EE  NG +V++KR+ YGP
Sbjct: 325  MIKNNERASRESRVSRVIILQPSVS----SDQLRKRSVPLDHEELTNGHEVSAKRIHYGP 380

Query: 58   NNHLAMSAQMNESWQDSVSVNGVSPSVPLLDSDLNPVEQMIAMIAALLAEGERGAESLEL 117
                A++ Q+N+S +DSV  NG S + PLLDSDL P EQMIAMI ALLAEGERGAESLE+
Sbjct: 381  IMSSAITLQINDSVEDSVCFNGSSSNAPLLDSDLTPAEQMIAMIGALLAEGERGAESLEI 440

Query: 118  LISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVTRQIGSLSSPAQVVVLPSQINTMQ 177
            LISNIHPDLLADIVI+NMKHL K PPPLTRLGN+PVTRQ  SLS+P Q V  PS      
Sbjct: 441  LISNIHPDLLADIVITNMKHLPKNPPPLTRLGNVPVTRQTASLSNPTQFVS-PSASTNYA 499

Query: 178  SSLLTAQVQLPSSVAAISSSLSDTATGNTSATDSKRDPRRDPRRLDPRRVATPVGVPSIS 237
            S++   QV   ++V A S SLSDT+T N    DSKRDPRRDPRRLDPRR ATPVG  S+ 
Sbjct: 500  STVSATQVPF-AAVVANSFSLSDTSTVNNIPADSKRDPRRDPRRLDPRRSATPVGGLSMP 558

Query: 238  TTEDAGPVQSEFDDSSSITRPPSLDITTSAENLPAPLMTSAKSDDMTFESPSVCKMDQPN 297
              +D G  + EFD S S ++P S+   TSAEN    L+++++SDD T ESP V + D+ +
Sbjct: 559  VADDTGATEPEFDGSVSSSKPLSVPAVTSAENSHVLLLSNSESDDKTLESPMVPETDELS 618

Query: 298  -AEEGLSRSEEIVTLPEVCASSDHRIS-SRAVDEDSAVVELSDVEV-YGTSTSSLVESDQ 354
              E+G S+ EEIV + EV ASSDH +S S  VDEDS   +LSDVEV YG +TS L++ DQ
Sbjct: 619  LKEDGFSKPEEIVPVSEVKASSDHALSPSHMVDEDSVTSKLSDVEVTYGDNTS-LMDVDQ 677

Query: 355  HTSAVSNASAWEETCKDLPPLPLFVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRM 414
            ++  VSN+S  EETC+DLP +P ++ELTEE+Q++VR  AVERI ESYKHL G +CS  RM
Sbjct: 678  NSPTVSNSSIPEETCQDLPQVPFYIELTEEQQRNVRNLAVERIIESYKHLSGIDCSLKRM 737

Query: 415  GLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAA 474
             LLARL+AQ+D D+DIV+MLQK +V +Y+ QKGHELV+HILYHL SLMI  S  +SSYA+
Sbjct: 738  ALLARLVAQVDEDDDIVVMLQKQIVVDYRLQKGHELVMHILYHLHSLMILDSPGSSSYAS 797

Query: 475  AVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVR 534
            AVYEK +L VAKSLLD FPASDKSFSRLLGEVP+LP+S L+LL +LCSS V D HGKEV 
Sbjct: 798  AVYEKFVLVVAKSLLDAFPASDKSFSRLLGEVPLLPESALKLLDDLCSSVVLDSHGKEVH 857

Query: 535  DGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYIT 594
            DGERVTQGLGAVW LILGRP  R ACLDIALK A HSQD+IRAKAIRLV+NKLYQ++YI 
Sbjct: 858  DGERVTQGLGAVWGLILGRPNNRHACLDIALKCAVHSQDDIRAKAIRLVANKLYQINYIA 917

Query: 595  ENIEQYATNMMLSAVNQHSSNLECSQSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDS 654
            E IEQ+AT M+LSAV+QH+S+ E SQS S D + +GE  SQETS+SGSQVS+    E ++
Sbjct: 918  EKIEQFATKMLLSAVDQHASDTELSQSGSID-QRDGEARSQETSVSGSQVSDTANVE-NN 975

Query: 655  VKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIP 714
             +  QP+  ++S +S  EAQRL SLFFALCT+KP LLQL+FD Y +APKSVKQA HRHIP
Sbjct: 976  KQSAQPVVKNMSIMSLSEAQRLISLFFALCTQKPSLLQLVFDIYGRAPKSVKQAVHRHIP 1035

Query: 715  ILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDA 774
            ILIRALGSSCSELL +ISDPP+G ENLL LVLQ LTQETTPS+DLIATVKHLYETKLKDA
Sbjct: 1036 ILIRALGSSCSELLRVISDPPEGCENLLMLVLQKLTQETTPSADLIATVKHLYETKLKDA 1095

Query: 775  TILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDI 834
            TILIP+LSSL+KNEVLPIFPRLV LP+EKFQMALAHILQGSAHTGPALTP EVLVAIHDI
Sbjct: 1096 TILIPILSSLSKNEVLPIFPRLVGLPIEKFQMALAHILQGSAHTGPALTPAEVLVAIHDI 1155

Query: 835  VPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFP 894
             PE++GLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFP
Sbjct: 1156 SPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFP 1215

Query: 895  TLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYAN 954
            TLVDFVMEILSKLV++QVW+MPKLWVGFLKCVSQ RPHSF VLL+LPPP LESA++K++N
Sbjct: 1216 TLVDFVMEILSKLVTRQVWKMPKLWVGFLKCVSQARPHSFRVLLQLPPPLLESAMSKHSN 1275

Query: 955  LRGPLATYASQPSLKSSIPRSILAVLGLANESHMQQLHISSLNPSD 1000
            LRGPLA +A+QPS+++S+PRS LAVLGL N+S  QQ H++SL+ SD
Sbjct: 1276 LRGPLAAFANQPSIRTSLPRSTLAVLGLLNDSQTQQPHVASLHTSD 1321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225458984\|ref\|XP_002283634.1\| PREDICTED: symplekin-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356510080\|ref\|XP_003523768.1\| PREDICTED: symplekin-like [Glycine max]	Back alignment and taxonomy information

>gi\|356518392\|ref\|XP_003527863.1\| PREDICTED: uncharacterized protein LOC100788861 [Glycine max]	Back alignment and taxonomy information

>gi\|449437266\|ref\|XP_004136413.1\| PREDICTED: uncharacterized protein LOC101202828 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|302142116\|emb\|CBI19319.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|145336172\|ref\|NP_174080.2\| symplekin [Arabidopsis thaliana] gi\|110737304\|dbj\|BAF00598.1\| hypothetical protein [Arabidopsis thaliana] gi\|332192730\|gb\|AEE30851.1\| symplekin [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6693013\|gb\|AAF24939.1\|AC012375_2 T22C5.3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|414880870\|tpg\|DAA58001.1\| TPA: hypothetical protein ZEAMMB73_982426 [Zea mays]	Back alignment and taxonomy information

>gi\|222619097\|gb\|EEE55229.1\| hypothetical protein OsJ_03106 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1011
TAIR\|locus:2823596		961	AT1G27595 [Arabidopsis thalian	0.933	0.982	0.515	6.9e-237
TAIR\|locus:2179137		1467	ESP4 "AT5G01400" [Arabidopsis	0.595	0.410	0.496	1.1e-156
UNIPROTKB\|E1BJF6		1272	SYMPK "Uncharacterized protein	0.295	0.235	0.391	6.4e-57
UNIPROTKB\|F1RM40		1272	SYMPK "Uncharacterized protein	0.295	0.235	0.391	6.4e-56
MGI\|MGI:1915438		1284	Sympk "symplekin" [Mus musculu	0.295	0.232	0.385	1.1e-55
UNIPROTKB\|Q92797		1274	SYMPK "Symplekin" [Homo sapien	0.295	0.234	0.388	2e-55
DICTYBASE\|DDB_G0284319		1493	sympk "symplekin" [Dictyosteli	0.296	0.200	0.335	3.8e-49
FB\|FBgn0037371		1165	Sym "Symplekin" [Drosophila me	0.295	0.256	0.384	3e-47
RGD\|1306735		305	Sympk "symplekin" [Rattus norv	0.139	0.462	0.420	7.9e-27
WB\|WBGene00017797		1143	symk-1 [Caenorhabditis elegans	0.254	0.224	0.229	8.6e-15

TAIR\|locus:2823596 AT1G27595 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2284 (809.1 bits), Expect = 6.9e-237, P = 6.9e-237
 Identities = 512/994 (51%), Positives = 649/994 (65%)

Query:    35 MPQDNEERNNGLDVASKRVRYGPNNHLAMSAQMNESWQDXXXXXXXXXXXXLLDSDLNPV 94
             MPQ  ++  NG +VA KRVR+  N HL    Q NES Q             L DS+L PV
Sbjct:     1 MPQGEDDTING-EVAPKRVRHNTNMHLTQQVQTNESLQGPVSINGISSGNHLSDSELTPV 59

Query:    95 EQMIAMIXXXXXXXXXXXXXXXXXISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVT 154
             EQM++MI                 IS +HPD+LADIVI++MKHL  TPP L         
Sbjct:    60 EQMVSMIGALLAEGDRGAASLEILISKLHPDMLADIVITSMKHLPSTPPTLA-------- 111

Query:   155 RQIGSLSSPAQVVVLPSQINTMQSSLLTAQVQLPXXXXX-XXXXXXDTATGNTSATDSKX 213
                 S+++PA +VV  S  NT+ S   T   QLP            +  + ++S  D + 
Sbjct:   112 ---SSVATPADIVV-SSSTNTVHSP--TPPAQLPFDPILPAGSSFSEVPSLSSSVADPRR 165

Query:   214 XXXXXXXXXXXXXVATPVGVPSISTTEDAGPVQSEFDDSSSITRPPSLDITTSAENLPAP 273
                          + + VG  S+   E    V  + D S+ +++P S+   T        
Sbjct:   166 DPRRDPRRMDPRRLNSSVGPTSLPVGEGKESVPVQKDISTLLSKPVSVSAVTPGATGSVH 225

Query:   274 LMTSAKSDDMTFESPSVCKMDQPNAEEGLSRSEEIVTLPEVCASSDHRISSRAVD----- 328
                   S +    S  +  +D P   E      +++T+P  C+     ISS  V      
Sbjct:   226 STAVELSQNKMMGSSGIRIIDPPECRE------DLLTVPNECSYPSKEISSLDVPLSPCR 279

Query:   329 EDSAVVE----LSDVEVYG-------TSTSSLVESDQHTSAVSNASAWEETCKDLPPLPL 377
             +D  + E    + D+++         + ++S+ + DQ   A S+ +A EE+ ++L P+P 
Sbjct:   280 DDEGIRETKYSVPDLDMLSVPDFDQHSPSASVPDFDQDPPAASDITAPEESYRELDPVPS 339

Query:   378 FVELTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKY 437
             +VELT E+ K+V   A+ERI ES +H+ G +C++ RM L+ARLIA+IDA  D+  +L++ 
Sbjct:   340 YVELTTEQSKTVGKLAIERIIESNRHVFGFDCNKIRMALIARLIARIDAGSDVATILREL 399

Query:   438 VVANYQEQKGHELVLHILYHLQSLMIXXXXXXXXYAAAVYEKLLLAVAKSLLDTFPASDK 497
             +  +++E KGH+LVLH+LYHL S+ I        YA  VYE  L++VA+S LD  PASDK
Sbjct:   400 ISVDHREFKGHDLVLHVLYHLHSMAILDTDESSFYAT-VYENFLISVARSFLDALPASDK 458

Query:   498 SFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYR 557
             SFSRL GE P LPDS + LL  LCS+   D  GKEV D ERVTQGLGAVWSLIL RP  R
Sbjct:   459 SFSRLFGEAPHLPDSAINLLDELCSTR-HDPVGKEVCDSERVTQGLGAVWSLILVRPNER 517

Query:   558 QACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHSSNLE 617
             +ACL IALK + HS++E+RAKAIRLV+NKLY L+YI E++EQ+AT+M+L+AVN  + NL 
Sbjct:   518 KACLAIALKCSVHSEEEVRAKAIRLVTNKLYHLTYIAEHVEQFATDMLLTAVNSET-NLS 576

Query:   618 CSQSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLT 677
              + S +  +K E +  SQ T  + S  S  G  ++ S +  Q  S  +S IS  EAQRL 
Sbjct:   577 QTASTAEGIKMEAK--SQITLTTESLGS--GNSDIPSQQDLQT-SREVSVISISEAQRLI 631

Query:   678 SLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQG 737
             SLFFALC KKP LL+L+F+ Y +APK V QAFHRHIPILIR LGSS +ELL IISDPP+G
Sbjct:   632 SLFFALCKKKPSLLRLVFEVYGRAPKMVNQAFHRHIPILIRELGSSYTELLQIISDPPKG 691

Query:   738 SENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLV 797
             SENLLT VLQILTQE  PS DLIATVKHLYETKLKD +ILIP+LSSLTK+EVLPIFP L+
Sbjct:   692 SENLLTYVLQILTQELAPSLDLIATVKHLYETKLKDVSILIPLLSSLTKDEVLPIFPPLL 751

Query:   798 DLPLEKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQR 857
             +LP EKFQ+ALAHILQGSAHTGPALTP EVL+AIHDIVPE++G  LKKITDACSACFEQR
Sbjct:   752 NLPPEKFQLALAHILQGSAHTGPALTPAEVLIAIHDIVPEKDGPPLKKITDACSACFEQR 811

Query:   858 TVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPK 917
             TVFTQQVLAKAL QMVD+TPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLV KQ+WR+PK
Sbjct:   812 TVFTQQVLAKALGQMVDRTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVRKQIWRLPK 871

Query:   918 LWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQPSLKSSIPRSIL 977
             LW GFLKCVSQT+PHSFPVLL+LP PQLES + K+ +LR  L  YA+QP+++SS+P S L
Sbjct:   872 LWPGFLKCVSQTKPHSFPVLLELPVPQLESIMKKFPDLRPSLTAYANQPTIRSSLPNSAL 931

Query:   978 AVLGLANESHMQQLHISSLNPSDTGSSEHGATPT 1011
             +VLGL N    +    S ++PSD  SS HGA  T
Sbjct:   932 SVLGLDNGQDSR----SQMHPSDATSSIHGAALT 961

GO:0005737 "cytoplasm" evidence=ISM

TAIR\|locus:2179137 ESP4 "AT5G01400" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BJF6 SYMPK "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RM40 SYMPK "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1915438 Sympk "symplekin" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92797 SYMPK "Symplekin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284319 sympk "symplekin" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0037371 Sym "Symplekin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

RGD\|1306735 Sympk "symplekin" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

WB\|WBGene00017797 symk-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1011
pfam12295		181	pfam12295, Symplekin_C, Symplekin tight junction p	1e-78

>gnl\|CDD\|221512 pfam12295, Symplekin_C, Symplekin tight junction protein C terminal	Back alignment and domain information

 Score =  254 bits (650), Expect = 1e-78
 Identities = 102/182 (56%), Positives = 127/182 (69%), Gaps = 4/182 (2%)

Query: 773 DATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQ--GSAHTGPALTPVEVLVA 830
           D   LIP+L  L K EVL + P+ + LP E  + AL  ILQ  G A     LTP E+LVA
Sbjct: 1   DIRFLIPLLGGLDKEEVLKLLPKFIKLPPEAVKEALNRILQPPGQATGTSVLTPSELLVA 60

Query: 831 IHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAI 890
           +H+I P+  G+ LKK+ DA   CFEQ TVFTQ VLA ALNQ+V+Q+PLPLLFMRT+IQA+
Sbjct: 61  LHNIDPD--GVPLKKLVDALDLCFEQTTVFTQDVLAAALNQIVEQSPLPLLFMRTLIQAL 118

Query: 891 DAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALN 950
             FP+L  FV+ ILS+L+ KQVW+  KLW GFLKC+   +P SFPV+L+LPP QLE  L 
Sbjct: 119 KKFPSLRSFVVNILSRLIQKQVWKNKKLWKGFLKCIKMLKPSSFPVILQLPPEQLEELLK 178

Query: 951 KY 952
           K 
Sbjct: 179 KL 180

This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1011
KOG1895		957	consensus mRNA cleavage and polyadenylation factor	100.0
PF12295		183	Symplekin_C: Symplekin tight junction protein C te	100.0
KOG1895		957	consensus mRNA cleavage and polyadenylation factor	95.01
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	81.58

>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=7.2e-97  Score=881.23  Aligned_cols=850  Identities=32%  Similarity=0.434  Sum_probs=701.9

Q ss_pred             cchHHhhhhcccCCCCCCCccccchhhhccCCCCcCcccccCCCCCCccceecCCCcccchhhhhcccccCccccCCCCC
Q 001800            3 RNSERARENRVDRNDQPSTQLPLLRDLLKKRSMPQDNEERNNGLDVASKRVRYGPNNHLAMSAQMNESWQDSVSVNGVSP   82 (1011)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (1011)
                      +|+|++|.++.++.-.+...|    ++.  +-.+|.   ..|. .+-.++++.....+-++               ++..
T Consensus        96 ~~~~~~~~~~s~w~~~~~~k~----~i~--~~~~~G---~v~v-k~~~~~f~~~~i~~~t~---------------~l~~  150 (957)
T KOG1895|consen   96 LHMEKNDLAESLWTAFHLFKD----RIC--LDDHQG---TVGV-KVLAAKFMEQSILLYTP---------------DLAR  150 (957)
T ss_pred             HhcchhHHHHHHHHHHHHhHH----HHh--hccccC---cchh-hhhHHHHHHhhhhhhcc---------------cccc
Confidence            466778888888877777777    444  555555   5555 37777888777777665               6677


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHHhcccccccchhhhhhccChhhHHHHHHHhCccCCCCCCCCccCCCCCccccccCCCC
Q 001800           83 SVPLLDSDLNPVEQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVTRQIGSLSS  162 (1011)
Q Consensus        83 ~~~~~~~~~~~v~q~i~~~~al~a~ge~~~~sl~il~s~~~~d~la~~v~~~m~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (1011)
                      +.+.++...+++|++.-|+|+|.+.|++|+.||++.|++++.|++     +-|+|+|-.+|........+.+.++..   
T Consensus       151 g~p~l~~~~~~~e~~~~~~~ll~~l~~p~s~~l~~~I~~l~~~~~-----~~~a~~~~~~pt~~s~~~~~~~~~v~~---  222 (957)
T KOG1895|consen  151 GHPFLSYHKTSSEAEQNLSALLSQLAHPTSQSLITVIESLLMDLL-----TSPAEMPVILPTLLSVMPNLPDESVPK---  222 (957)
T ss_pred             CCcccccccchHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhhhc-----cChhhccccchhhhcccCCCcccccHH---
Confidence            789999999999999999999999999999999999999999999     889999999988766666666653333   


Q ss_pred             CccccccccccccccchhhhhcccCCcchhh-cccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCccccccC
Q 001800          163 PAQVVVLPSQINTMQSSLLTAQVQLPSSVAA-ISSSLSDTATGNTSATDSKRDPRRDPRRLDPRRVATPVGVPSISTTED  241 (1011)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  241 (1011)
                               -.++.  +.+.-.+++|.+... ++...+..+-.+++.+|..|+|++++++++|.|....++.+.+.|.+.
T Consensus       223 ---------~~~~~--l~~~~~~~lp~~~pl~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~p~~l~~~v~~t~v~v~e~  291 (957)
T KOG1895|consen  223 ---------VLKTA--LMPHFGALLPAKLPLAAPSTTSELDVVSSGSADANREPPFLAAQYLPLRLAMSVSTTDVLVPEN  291 (957)
T ss_pred             ---------HHHhh--hcccchhcCCCcCccccccchhhhhhhccCCccccccchhhhhccCCCcchhcccccceecccc
Confidence                     33322  235666777776555 888889999999999999999999999999999998888877777655


Q ss_pred             CCCcccccCCCCCCCCCCCCcccCcccCCCCCccCCcCCCCCccCCCccccCCCCCcccccccccccccCcccccccccc
Q 001800          242 AGPVQSEFDDSSSITRPPSLDITTSAENLPAPLMTSAKSDDMTFESPSVCKMDQPNAEEGLSRSEEIVTLPEVCASSDHR  321 (1011)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (1011)
                      -..+.          .|......+.+-++....+...-+..+++-+.+..-.+...+..+.....++.+       -.+.
T Consensus       292 ~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~a~~~t~~S~~r~v~~~~~~~e~~~~ek~i~~-------~~v~  354 (957)
T KOG1895|consen  292 IVLIF----------APVPLVLDTVGATGNQEMFAQLCALKKTVLSLGRGVYDTRPCVEDEQIEKNIGS-------LLVL  354 (957)
T ss_pred             hhhcc----------CcccchhhccccccChhhHHHHHHhhhhccccCcccccccchhhhhhhhccccc-------ceee
Confidence            44433          233334445555555555444444444444444332222222222110011111       1111


Q ss_pred             cccccccccccccccccccccc---c---ccccccccCccccccccccccccCcccCCCCCCCcCCCHHHHHHHHHHHHH
Q 001800          322 ISSRAVDEDSAVVELSDVEVYG---T---STSSLVESDQHTSAVSNASAWEETCKDLPPLPLFVELTEEEQKSVRTFAVE  395 (1011)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~d~~~~~~~~~~~~~~~~~~LP~~ppp~~Ls~eek~~l~~~Av~  395 (1011)
                      ++ ++++    .....++.+++   .   +.-+.+..|+-.|.++...+.+...+-+=..+....++.++.+.+++.|..
T Consensus       355 is-r~ie----~~~~~~t~~p~~~~l~~p~~~~~Pa~~~~~~~a~~~~~~~~s~~Ll~~v~~~~t~~~~~~~~~~~~a~~  429 (957)
T KOG1895|consen  355 IS-RFIS----YVLLSKTSSPGLAELISPLSNMVPDEDVRPPTASELTAKRLSKKLLNYLEEAQPLTDSQAIGMGNSASE  429 (957)
T ss_pred             ee-ehhh----hheeecccCCccchhcCchhhcCccccCCCcccccccccHHHHHHHhhhhhhcchhhHHHHHHHhhHHH
Confidence            22 2211    00011122221   1   111344444444443444444444455556777788999999999999999


Q ss_pred             HHHhhhhhhcccccchhhHHHHHHhhhccCCchHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHhccCCCCCchhH
Q 001800          396 RIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAA  475 (1011)
Q Consensus       396 RIl~~ek~~~~~G~~~~w~~LLaRLaTR~~~~~~iRe~L~~fILeDfr~R~gidLAl~WLyEEys~~~~~~~~~~~~~~~  475 (1011)
                      ||...++.+...|....++.+.+||.++|+.+  -...+..|++++++.|  +|++++|||++|+..+++..      ..
T Consensus       430 ~i~~~~r~V~~~~~nl~r~~vsa~l~~ef~sd--~~~~~~~f~~~~~~~~--~dl~~~~l~~~~~~~i~~s~------~~  499 (957)
T KOG1895|consen  430 RILRAERRVIAIGANLLRQKVDARLVLRFKSD--FKKELKEFVLDAVKKR--HDLALQWLYKLYSAYIGSSD------YS  499 (957)
T ss_pred             HHHHhhhHHHHhhhHHHHHHhhhhheeeeehh--HHHHHhHhhhhhhhhc--cchHHHHHHHHHHHHhhhhh------hh
Confidence            99999999999999999999999999999887  3456789999999988  99999999999998887631      12


Q ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHhhhcCCCCCHHHHHHHHhhccCcccccCCccccCchhhhhHHHHHHHHHhcCCh
Q 001800          476 VYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPY  555 (1011)
Q Consensus       476 ~Ye~wLl~LL~~L~~~l~~kDklf~RLLlElP~Lt~~aL~~Lk~lC~~~~~~~~~k~~~DpeRv~lGl~aLr~LIm~RPp  555 (1011)
                      -|+++++++.+++++.++.+|++|.+.++|+|.++.+++.+|+.+|             +..|+++||.++|.+|+.||.
T Consensus       500 ~ye~~~~~l~~~~~e~~~~~~~~f~k~~~dapll~~~al~~l~~~c-------------~~~~~t~g~s~~~sli~~rp~  566 (957)
T KOG1895|consen  500 SYEKFLITLLSALLESFSKKDKIFSKVLLEAPLLRQSALELLELWC-------------DALRVTLGMSTLRSLIFSRPA  566 (957)
T ss_pred             hhhHHHHHHHHhhhcccCccccccccccccCccCCHHHHHHHHHHh-------------hhhhhhcchHHHHHHHhcCcc
Confidence            2999999999999999999999999999999999999999999999             568999999999999999999


Q ss_pred             hhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHhhcccCCccccccccchhhhhccccCCc
Q 001800          556 YRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHSSNLECSQSDSADLKAEGEVGSQ  635 (1011)
Q Consensus       556 ~R~~~L~iLLela~he~eevR~~AIrll~n~Ly~~~~l~~~Ie~FA~~~L~~l~~~~~~~~~~~q~~~~~~k~~~E~gs~  635 (1011)
                      .|.+|+++++++..|+.+++|.+||++++ ++|.+.++++.|++||.+++..++++.++......               
T Consensus       567 ~~~~~l~~l~~l~~~~k~~~r~~~i~~v~-~l~~~~~i~e~i~d~a~~~l~~~v~~~~~~~~~~~---------------  630 (957)
T KOG1895|consen  567 TRSQCLNILLGLSVHEKEELRSKAIRLVT-KLYSLKFIRETIEDFASDMLSSLVNEDPPQVPDIL---------------  630 (957)
T ss_pred             cchhHHHHHHHHhhhhHHHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhHHHhhcCCcccccccc---------------
Confidence            99999999999999999999999999987 89999999999999999999999886655321000               


Q ss_pred             ccccCCCCcCCCCCcccCcCCCCCCccCCCCCCCHHHHHHHHHHHHHhhcCCcccHHHHHHHhccCcHHHHHHHHhhhHH
Q 001800          636 ETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPI  715 (1011)
Q Consensus       636 ~~~~~~~~~~E~~~~e~~~~~~~~~~~e~~~~~s~~~~kr~L~LylALc~k~p~LL~~Lf~VY~~a~~~VKraV~r~I~~  715 (1011)
                                     ...+++           |.....+.++.+|.++.+..+.+++.+|.+|++....+||.+.+.++.
T Consensus       631 ---------------~~~s~~-----------~~~~~~~s~l~~~~~~~~s~~~~l~~~~~ls~~~~~~~~r~~d~~~~~  684 (957)
T KOG1895|consen  631 ---------------TELSAQ-----------WIDEMDKSKLTVYLTLVPSRYKDLMSLAALSTQSLSSFKRQVDRDLDE  684 (957)
T ss_pred             ---------------hhhhhh-----------HHHhhhhhHHHHHHhhccchhhHHHHHHHhcchhhhhhhhhhhhhcch
Confidence                           000001           112456889999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCcHHHHHhhcCCCCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcccCCceeeecccCCCChhhHhhhchh
Q 001800          716 LIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPR  795 (1011)
Q Consensus       716 lIR~mG~ss~eLL~LIe~cP~GAEtLv~RIL~iLTek~~PS~eLV~~Vk~Ly~~r~~DVRfLIPIL~gL~K~EVl~~LPk  795 (1011)
                      .++.+|.++|+++.++++||.|+|+||.|++++||++-+||.+|+++||+||++|.+|+++|+||+++|+|+||++++|.
T Consensus       685 ~~~~~~~~~~~l~~~Ve~~~~~ae~lv~~~v~~ltde~~ps~~li~tv~~l~~~r~~dvs~L~pi~~~lerd~V~~~~p~  764 (957)
T KOG1895|consen  685 DFEPLGVDSPELLALVEDCPAGAETLVPRLVVTLTDELPPSTDLIQTVKKLYETRLKDVSALLPILPGLERDEVLQLLPQ  764 (957)
T ss_pred             hhhhhccchHHHHHHHHhccccCccchhhheeeccccCCCChHHHHHHHHHHHHhhhhHHHHHhhcCCCCHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCChHHHHHHHHHHhhcCCCCC--CCCCHHHHHHHhhccCCchhhhhHHHHHHHhhhhccCCCCCCHHHHHHHHHHHh
Q 001800          796 LVDLPLEKFQMALAHILQGSAHTG--PALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMV  873 (1011)
Q Consensus       796 fV~L~~e~f~~~L~ril~~s~~tg--~~LtP~ELLVaLH~Id~~kd~I~lK~vi~Ai~lCF~~~~VFt~eVLA~aLqqLv  873 (1011)
                      ++++++++|+.++.++++++...|  ++++|.|+++++|.|++.++ +..|++++||++||+++.+|++++++.+++|++
T Consensus       765 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~p~e~li~~H~i~~~~d-~~~~~~~~a~n~cf~~~~~f~~~~~~~~l~~l~  843 (957)
T KOG1895|consen  765 LLKLPPKVVKLAFRRLLTGSSLSGRLPVLDPSEVLIALHAIDPLKD-VRGKLATDALNLCFESRNLFTQQVLAQALNQLV  843 (957)
T ss_pred             hhhcchHHHHHHHHHHhhcccccCCCCccCcHHHHHHHHhcccccC-chHHHHHHHHHHHHhhhhcccHHHHHHHHHHHH
Confidence            999999999999999999888888  89999999999999999998 899999999999999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhhhccCCcchHHHHHHHhhhCCCchhHHhcCChHHHHHHHHHhh
Q 001800          874 DQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYA  953 (1011)
Q Consensus       874 e~~pLP~LfMRTVIqal~~~P~L~~FV~nIL~rLI~KqVWk~~~lW~GFikCa~~~kP~Sf~vLLqLP~~QL~~~L~k~P  953 (1011)
                      ++.++|.||||||||++.+||+|++||+++|+||++||+|+++++|+||.||+++++|++|+++|+||+.||..++.|+|
T Consensus       844 ~~~nlp~lf~rtv~q~~~~fp~l~~fV~e~Lsrlvekkiwk~~~~w~gf~kc~~~~~p~s~~V~L~l~~~qLg~~l~K~l  923 (957)
T KOG1895|consen  844 KWENLPLLFMRTVIQALPKFPKLSLFVLEILSRLVEKKIWKFPKRWEGFPKCTSATKPKSKPVCLDLPPTQLGFILKKFL  923 (957)
T ss_pred             hccCCchhhHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeeCChHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhcCcCCCCCCcHHHHHHhc-ccc
Q 001800          954 NLRGPLATYASQPSLKSSIPRSILAVLG-LAN  984 (1011)
Q Consensus       954 ~Lr~~L~~~~~~~~~~~~ipr~~l~vLg-~~~  984 (1011)
                      .||.+|.+|+.++.+|+|.|++.+.++| +++
T Consensus       924 ~lR~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  955 (957)
T KOG1895|consen  924 MLRPPLTAHVLTPQQKSHDPNSHKSVLGLLDN  955 (957)
T ss_pred             hhhhHHHHHhccHhhhhcChhHHHHHHhhccc
Confidence            9999999999999999999999999999 444

>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length	Back alignment and domain information

>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1011
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.0 bits (191), Expect = 1e-14
 Identities = 100/691 (14%), Positives = 196/691 (28%), Gaps = 247/691 (35%)

Query: 58  NNHLAMSAQMNE---SWQDSVSVNGVSPSVPLLD----SDL-----------------NP 93
           ++H  M  +  E    ++D +SV      V   D     D+                 + 
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 94  VEQMIAMIAALLAEGERGAESL---------ELLISNIH-----PDLLADIVISNMKHLH 139
           V   + +   LL++ E   +           + L+S I      P ++  + I     L+
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 140 KTPPPLTRLGNLPVTR--QIGSLSS------PAQVVVLPSQINTMQS---SLLTAQV--- 185
                  +     V+R      L        PA+ V++    + +     + +   V   
Sbjct: 121 NDNQVFAK---YNVSRLQPYLKLRQALLELRPAKNVLI----DGVLGSGKTWVALDVCLS 173

Query: 186 -----QLPSSVAAISSSLSDTATGNTSATDSKRDPRRD-PRRLDPRRVATPVGVPSIS-T 238
                ++   +  ++         N ++ ++  +  +    ++DP   +      +I   
Sbjct: 174 YKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 239 TEDAGPVQSEFDDSSSITRPPSLDITTSAENLPAPLMTSAKSDDMTFESPSV-------C 291
                        S        L +      L           ++  ++          C
Sbjct: 227 IHSIQAELRRLLKSKP--YENCLLV------L----------LNV--QNAKAWNAFNLSC 266

Query: 292 KMDQPNAEEGLSRSEEIVTLPEVCASSDHRISSRAVDEDSAVVELSDVEVYGTSTSSLVE 351
           K+              ++T             +R       V +   +    T+  SL  
Sbjct: 267 KI--------------LLT-------------TR----FKQVTD--FLSAATTTHISLDH 293

Query: 352 SDQ---HTSAVSNASAW-EETCKDLPP-----LPL----FVELTEEEQ------KSVRTF 392
                      S    + +   +DLP       P       E   +        K V   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 393 AVERIFE-SYKHLQGAECSQTR----------------MGLLARLIAQIDADEDIVMM-- 433
            +  I E S   L+ AE    R                  LL+ +   +   + +V++  
Sbjct: 354 KLTTIIESSLNVLEPAE---YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 434 LQKYVVANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFP 493
           L KY +   ++ K   + +  +Y    L +   NE      A++  ++     ++  TF 
Sbjct: 411 LHKYSLVE-KQPKESTISIPSIY--LELKVKLENE-----YALHRSIVDHY--NIPKTFD 460

Query: 494 ASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGR 553
           + D          P L       +G+         H K +   ER+T             
Sbjct: 461 SDDLI-------PPYLDQYFYSHIGH---------HLKNIEHPERMTL------------ 492

Query: 554 PYYRQACLDIALKSAAHSQDEIRAKAIRL----------VSNKLYQL----SYITENIEQ 599
             +R   LD            +  K IR           + N L QL     YI +N  +
Sbjct: 493 --FRMVFLDFRF---------LEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 600 YATNMMLSA----VNQHSSNLECSQSDSADL 626
           Y    +++A    + +   NL C  S   DL
Sbjct: 541 Y--ERLVNAILDFLPKIEENLIC--SKYTDL 567

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1011
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	87.29