Citrus Sinensis ID: 001801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010-
Protein Sequence
MNIVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRKFK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEEEcccccccccHHHHHccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHcccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccEEEEEccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEcccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccccHHHHHcccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHccccccEEEEcccccccccccccHccccccEEEEcccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcHccccEEEcccccccccccHHHHHccccccEEEcccccEEEEccccccccccEEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccccccccccEEEEEccccccccccccccccEEEEcccccccccccHHHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccEEEEcccccccccccHHHHHcccccEEEEEccccccccccHHHcccccEEEEEcccccccccccHHHHcHHHHHHccccccccccccccccccccccccccccccccccEEEEEccccHHHHccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHcccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHEEEEEEcc
Coil and Loop (DISEMBL)
MNIVVSFVLLELLAVATISLSfcggatclgHCIESEREALLKFKKdlkdpsnrlvswngagdgadcckwsgvvcdnftGHVLELrlgnplnhpisyhtspaQYSIIYRTYGAEyeayerskfggkinpsllhfqhlnyldlsgnsfgggiprflgsmgklkylnlsgagfkgmiphqlgnlsklqyldlvenselyvdnlswlpglsllqhldlggvnlgkAFDWSLAINSLSSLRVLRLsgcqldhfhpppivnissisvldlssnqfdqnsLVLSWVFGLSNlvyldlgsndfqgsipvglqnltslrhldlsyndfnssipNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLssqqlegqiprsfgrlcnlreislsdvkmSQDISEILDIFSSCIsdrleswdmtgckifghltsqighfksldslflshnsisglipsslgglssLERVVLSNNTLKGYLSEIHLANLSKLvsfdvsgnaltlkvgpdwippfqlekldlqschlgptfpfwLLSQNVLgyldisrsgiqdtvparfweaspqlyflnfsnsringeipnlskatglrtvdlssnnlsgtlplisfqlesidlsnnafsgsispvlcngmrgelqvlnlennsfsgeipdcWMNFLYLRVLNlgnnnftgnlppslgslgsltLLHLQKnslsgripeslsnCNRLVSlnmdgnqfsgdiptwigEKFSSMVILNLRsnifdgqfptelCFLTSLQILDLgynnlsgaIPKCISNLsamvtvdyplgdthpgitdcslyrsclprprsfsdpIEKAFLVMKGKELEYSTILYLVALIDLsknnfsgeipvEVTDLVALRSLNLsynhfsgripdsigamkSIEVIdfsnnqlseeiprsvsnltFLNLLNLSYNylsgeiptstqlqsfdascfigndlcgsplsrnctetvpmpqdgngeddedEVEWFYVSMALGCVVGFWfvigplivnrrWRYMYSVFLDRLGDKCSTAIRKFK
Flexible Loop (DISEMBL)
MNIVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLdrlgdkcstairkfk
Low Complexity Region (SEG)
MNIVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINslsslrvlrlsGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNsisglipsslgglsslERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVlnlgnnnftgnlppslgslgsltllhlQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRsvsnltflnllnlsynylsGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQdgngeddedeveWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRKFK
Disordered region (IsUnstruct)
**IVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPL**********************VEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTA*****
Disordered Region (DISOPRED)
***VVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSP*************************WFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRKFK
Disordered Region (DISEMBL)
MNIVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRKFK
Disordered Region (DISPRO)
*NIVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCT**************EDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRKFK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRKFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1011	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.730	0.590	0.309	1e-73
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.790	0.639	0.294	6e-72
Q9C9H7	847	Receptor-like protein 12	no	no	0.672	0.802	0.304	2e-71
Q9FL28	1173	LRR receptor-like serine/	no	no	0.651	0.561	0.319	1e-66
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.661	0.588	0.300	6e-62
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.740	0.628	0.293	1e-61
O49318	1124	Probable leucine-rich rep	no	no	0.623	0.560	0.304	4e-58
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.598	0.549	0.296	3e-57
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.572	0.506	0.297	7e-57
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.624	0.527	0.309	5e-56

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  279 bits (713), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 263/851 (30%), Positives = 410/851 (48%), Gaps = 112/851 (13%)

Query: 124 GKINPSLLHFQHLNYLDLSGNSF-------------------------GGGIPRFLGSMG 158
           G I+PS+  F +L ++DLS N                            G IP  LGS+ 
Sbjct: 85  GSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLV 144

Query: 159 KLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVN 218
            LK L L      G IP   GNL  LQ L L             L GL            
Sbjct: 145 NLKSLKLGDNELNGTIPETFGNLVNLQMLALAS---------CRLTGL------------ 183

Query: 219 LGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSW 278
           +   F        L  L+ L L   +L+   P  I N +S+++   + N+   N  + + 
Sbjct: 184 IPSRF------GRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRL--NGSLPAE 235

Query: 279 VFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL 338
           +  L NL  L+LG N F G IP  L +L S+++L+L  N     IP  L   +NL  + L
Sbjct: 236 LNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDL 295

Query: 339 RSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF-GRLCNLREISLSDVKMSQDI- 396
            SN+L G I      ++  +E L L+  +L G +P++      +L+++ LS+ ++S +I 
Sbjct: 296 SSNNLTGVIHEEFWRMN-QLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIP 354

Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL 456
           +EI    S+C S +L   D++   + G +   +     L +L+L++NS+ G + SS+  L
Sbjct: 355 AEI----SNCQSLKL--LDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNL 408

Query: 457 SSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSC 516
           ++L+   L +N L+G + +  +  L KL    +  N  + ++  +     +L+++D    
Sbjct: 409 TNLQEFTLYHNNLEGKVPK-EIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGN 467

Query: 517 HLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLS 575
            L    P  +     L  L +  + +   +PA       Q+  ++ ++++++G IP +  
Sbjct: 468 RLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCH-QMTVIDLADNQLSGSIPSSFG 526

Query: 576 KATGLRTVDLSSNNLSGTLP--LISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNL 632
             T L    + +N+L G LP  LI+ + L  I+ S+N F+GSISP LC G    L   ++
Sbjct: 527 FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP-LC-GSSSYLS-FDV 583

Query: 633 ENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPES 692
             N F G+IP        L  L LG N FTG +P + G +  L+LL + +NSLSG IP  
Sbjct: 584 TENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVE 643

Query: 693 LSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILD 752
           L  C +L  ++++ N  SG IPTW+G K   +  L L SN F G  PTE+  LT++  L 
Sbjct: 644 LGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLF 702

Query: 753 LGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLV 812
           L  N+L+G+IP+ I NL A+  ++                          S P+      
Sbjct: 703 LDGNSLNGSIPQEIGNLQALNALNL--------------------EENQLSGPLP----- 737

Query: 813 MKGKELEYSTILYLVALID--LSKNNFSGEIPVEVTDLVALRS-LNLSYNHFSGRIPDSI 869
                   STI  L  L +  LS+N  +GEIPVE+  L  L+S L+LSYN+F+GRIP +I
Sbjct: 738 --------STIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTI 789

Query: 870 GAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIG 929
             +  +E +D S+NQL  E+P  + ++  L  LNLSYN L G++    Q   + A  F+G
Sbjct: 790 STLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVG 847

Query: 930 N-DLCGSPLSR 939
           N  LCGSPLS 
Sbjct: 848 NAGLCGSPLSH 858

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  273 bits (697), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 278/943 (29%), Positives = 434/943 (46%), Gaps = 144/943 (15%)

Query: 33  IESEREALLKFKKDL---KDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNP 89
           I ++ + LL+ KK L       + L  WN   D  + C W+GV CDN TG          
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNS--DNINYCSWTGVTCDN-TG---------- 69

Query: 90  LNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGG 149
                           ++R               G I+P    F +L +LDLS N+  G 
Sbjct: 70  ----------------LFRVIALNLTGL---GLTGSISPWFGRFDNLIHLDLSSNNLVGP 110

Query: 150 IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLL 209
           IP  L ++  L+ L L      G IP QLG+L  ++ L + +N                 
Sbjct: 111 IPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDN----------------- 153

Query: 210 QHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQF 269
              +L G       D    + +L +L++L L+ C+L    P  +  +  +  L L  N  
Sbjct: 154 ---ELVG-------DIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYL 203

Query: 270 DQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLAS 329
           +    + + +   S+L       N   G+IP  L  L +L  L+L+ N     IP+ L  
Sbjct: 204 E--GPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGE 261

Query: 330 FSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
            S L ++SL +N LQG I   LA+L  +++ LDLS+  L G+IP  F  +  L ++ L++
Sbjct: 262 MSQLQYLSLMANQLQGLIPKSLADL-GNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLAN 320

Query: 390 VKMSQDISEILDIFSSCISD-RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL 448
             +S  + +     S C ++  LE   ++G ++ G +  ++   +SL  L LS+NS++G 
Sbjct: 321 NHLSGSLPK-----SICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGS 375

Query: 449 IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQL 508
           IP +L  L  L  + L NNTL+G LS   ++NL+ L    +  N L  K+  +     +L
Sbjct: 376 IPEALFELVELTDLYLHNNTLEGTLSP-SISNLTNLQWLVLYHNNLEGKLPKEISALRKL 434

Query: 509 EKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVP---ARFWEAS----------- 554
           E L L         P  + +   L  +D+  +  +  +P    R  E +           
Sbjct: 435 EVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVG 494

Query: 555 ---------PQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLP--LISFQ-L 601
                     QL  L+ ++++++G IP+      GL  + L +N+L G LP  LIS + L
Sbjct: 495 GLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNL 554

Query: 602 ESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNF 661
             I+LS+N  +G+I P LC G    L   ++ NN F  EIP    N   L  L LG N  
Sbjct: 555 TRINLSHNRLNGTIHP-LC-GSSSYLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQL 611

Query: 662 TGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
           TG +P +LG +  L+LL +  N+L+G IP  L  C +L  ++++ N  SG IP W+G K 
Sbjct: 612 TGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KL 670

Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
           S +  L L SN F    PTEL   T L +L L  N+L+G+IP+ I NL A+  ++     
Sbjct: 671 SQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNL---- 726

Query: 782 THPGITDCSLYRSCLPRPRSFSDPIEKAFLV---MKGK-ELEYSTILYLVALIDLSKNNF 837
                 D + +   LP+       + +  L    + G+  +E   +  L + +DLS NNF
Sbjct: 727 ------DKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNF 780

Query: 838 SGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLT 897
           +G+IP  +  L  L +L+LS+N  +G +P S+G MKS                       
Sbjct: 781 TGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKS----------------------- 817

Query: 898 FLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGND-LCGSPLSR 939
            L  LN+S+N L G++    Q   + A  F+GN  LCGSPLSR
Sbjct: 818 -LGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  271 bits (692), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 242/796 (30%), Positives = 358/796 (44%), Gaps = 116/796 (14%)

Query: 277  SWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHI 336
            S +F L  L +LDL + +  G IP  L NL+ L  ++L +N F   IP  + + + L H+
Sbjct: 104  SSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHL 163

Query: 337  SLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDI 396
             L +N L G I   L NLS  +  L+L S +L G+IP S G L  LR +SL+        
Sbjct: 164  ILANNVLTGEIPSSLGNLSRLVN-LELFSNRLVGKIPDSIGDLKQLRNLSLA-------- 214

Query: 397  SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL 456
                                    + G + S +G+  +L  L L+HN + G +P+S+G L
Sbjct: 215  ---------------------SNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNL 253

Query: 457  SSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSC 516
              L  +   NN+L G +  I  ANL+KL  F +S N  T     D      LE  D+   
Sbjct: 254  IELRVMSFENNSLSGNIP-ISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYN 312

Query: 517  HLGPTFP-----------FWLLSQNVLGYLDI----SRSGIQDTVPARFWEASP------ 555
                 FP            +L      G ++     S + +QD +  R     P      
Sbjct: 313  SFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESIS 372

Query: 556  ---QLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSNNLSGTLPLISFQL---------- 601
                L  L+ S++   G IP  +SK   L  +DLS NNL G +P   ++L          
Sbjct: 373  RLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSF 432

Query: 602  -------------ESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNF 648
                         E +DL++N+F G I  ++C      L  L+L NN FSG IP C  NF
Sbjct: 433  SSFENTSQEEALIEELDLNSNSFQGPIPYMICK--LSSLGFLDLSNNLFSGSIPSCIRNF 490

Query: 649  L-YLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGN 707
               ++ LNLG+NNF+G LP        L  L +  N L G+ P+SL NC  L  +N++ N
Sbjct: 491  SGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESN 550

Query: 708  QFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFL--TSLQILDLGYNNLSGAIPKC 765
            +     P+W+ E   S+ +LNLRSN F G        +   SL+I+D+ +NN SG +P  
Sbjct: 551  KIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPY 609

Query: 766  -ISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTIL 824
              SN   M T+   +      +T+   Y        S+   +E   +V KG ++ +  I 
Sbjct: 610  YFSNWKDMTTLTEEMDQY---MTEFWRYAD------SYYHEME---MVNKGVDMSFERIR 657

Query: 825  YLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQ 884
                 ID S N  +G IP  +  L  LR LNLS N F+  IP  +  +  +E +D S N+
Sbjct: 658  RDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNK 717

Query: 885  LSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGN-------DLCGSPL 937
            LS +IP+ ++ L+FL+ +N S+N L G +P  TQ Q    S F+ N       D+C    
Sbjct: 718  LSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTG 777

Query: 938  SRNCTETVPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIV--NRRWRYMYSVF 995
            + N T  +P   +   E +E+   W   ++A G  V    VIG      N  W      F
Sbjct: 778  ALNPTSQLP---EDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHFYTSHNHEW------F 828

Query: 996  LDRLGDKCSTAIRKFK 1011
             ++ G K   A+   K
Sbjct: 829  TEKFGRKQHKALTSVK 844

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  255 bits (652), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 240/751 (31%), Positives = 359/751 (47%), Gaps = 92/751 (12%)

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQF------------DQNSLVL----------SWVFG 281
           QL+    P I N++ + VLDL+SN F            + N L+L          S ++ 
Sbjct: 83  QLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWE 142

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           L N+ YLDL +N   G +P  +   +SL  +   YN+    IP  L    +L       N
Sbjct: 143 LKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGN 202

Query: 342 SLQGSI---TGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISE 398
            L GSI    G LANL+     LDLS  QL G+IPR FG L NL+ + L++  +  DI  
Sbjct: 203 HLTGSIPVSIGTLANLTD----LDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPA 258

Query: 399 ILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSS 458
            +   SS +  +LE +D    ++ G + +++G+   L +L +  N ++  IPSSL  L+ 
Sbjct: 259 EIGNCSSLV--QLELYD---NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ 313

Query: 459 LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHL 518
           L  + LS N L G +SE         + F  S                 LE L L S + 
Sbjct: 314 LTHLGLSENHLVGPISE--------EIGFLES-----------------LEVLTLHSNNF 348

Query: 519 GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKA 577
              FP  + +   L  L +  + I   +PA     +  L  L+  ++ + G IP+ +S  
Sbjct: 349 TGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLT-NLRNLSAHDNLLTGPIPSSISNC 407

Query: 578 TGLRTVDLSSNNLSGTLP--LISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENN 635
           TGL+ +DLS N ++G +P       L  I +  N F+G I   + N     L+ L++ +N
Sbjct: 408 TGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNC--SNLETLSVADN 465

Query: 636 SFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSN 695
           + +G +         LR+L +  N+ TG +P  +G+L  L +L+L  N  +GRIP  +SN
Sbjct: 466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN 525

Query: 696 CNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGY 755
              L  L M  N   G IP  + +    + +L+L +N F GQ P     L SL  L L  
Sbjct: 526 LTLLQGLRMYSNDLEGPIPEEMFD-MKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQG 584

Query: 756 NNLSGAIPKCISNLSAMVTVDYP---LGDTHPG-----ITDCSLYRSCLPRPRSFSDPIE 807
           N  +G+IP  + +LS + T D     L  T PG     + +  LY +      + + P E
Sbjct: 585 NKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKE 644

Query: 808 KAFLVMKGKELEYSTILYL------------VALIDLSKNNFSGEIPVEV-TDLVALRSL 854
              L M  +E++ S  L+             V  +D S+NN SG IP EV   +  + SL
Sbjct: 645 LGKLEMV-QEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISL 703

Query: 855 NLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIP 914
           NLS N FSG IP S G M  +  +D S+N L+ EIP S++NL+ L  L L+ N L G +P
Sbjct: 704 NLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVP 763

Query: 915 TSTQLQSFDASCFIGN-DLCGS--PLSRNCT 942
            S   ++ +AS  +GN DLCGS  PL + CT
Sbjct: 764 ESGVFKNINASDLMGNTDLCGSKKPL-KPCT 793

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  239 bits (611), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 231/769 (30%), Positives = 347/769 (45%), Gaps = 100/769 (13%)

Query: 279  VFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL 338
            + GL  L  L L SN F G+IP  L   T L  + L YN  +  +P  + + ++L   ++
Sbjct: 88   ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNV 147

Query: 339  RSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISE 398
              N L G I      L +S++ LD+SS    GQIP     L  L+ ++LS  +++ +I  
Sbjct: 148  AGNRLSGEIP---VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPA 204

Query: 399  ILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSS 458
             L    S     L+   +    + G L S I +  SL  L  S N I G+IP++ G L  
Sbjct: 205  SLGNLQS-----LQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPK 259

Query: 459  LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQ--LEKLDLQSC 516
            LE + LSNN   G +      N S L    +  NA +  V P+     +  L+ LDLQ  
Sbjct: 260  LEVLSLSNNNFSGTVPFSLFCNTS-LTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQEN 318

Query: 517  HLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSK 576
             +   FP WL +   L  LD+S +     +P                        P++  
Sbjct: 319  RISGRFPLWLTNILSLKNLDVSGNLFSGEIP------------------------PDIGN 354

Query: 577  ATGLRTVDLSSNNLSGTLPLISFQ---LESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
               L  + L++N+L+G +P+   Q   L+ +D   N+  G I   L  G    L+VL+L 
Sbjct: 355  LKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFL--GYMKALKVLSLG 412

Query: 634  NNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESL 693
             NSFSG +P   +N   L  LNLG NN  G+ P  L +L SL+ L L  N  SG +P S+
Sbjct: 413  RNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSI 472

Query: 694  SNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDL 753
            SN + L  LN+ GN FSG+IP  +G  F  +  L+L      G+ P EL  L ++Q++ L
Sbjct: 473  SNLSNLSFLNLSGNGFSGEIPASVGNLF-KLTALDLSKQNMSGEVPVELSGLPNVQVIAL 531

Query: 754  GYNNLSGAIPKCISNLSAMVTV----------------------------DYPLGDTHPG 785
              NN SG +P+  S+L ++  V                            ++  G   P 
Sbjct: 532  QGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPE 591

Query: 786  ITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEV 845
            I +CS       R       I               + L  + ++DL +NN SGEIP E+
Sbjct: 592  IGNCSALEVLELRSNRLMGHIPADL-----------SRLPRLKVLDLGQNNLSGEIPPEI 640

Query: 846  TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV----SNLTFLNL 901
            +   +L SL+L +NH SG IP S   + ++  +D S N L+ EIP S+    SNL +   
Sbjct: 641  SQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVY--- 697

Query: 902  LNLSYNYLSGEIPTSTQLQSFDASCFIGN-DLCGSPLSRNCTETVPMPQDGNGEDDEDEV 960
             N+S N L GEIP S   +  + S F GN +LCG PL+R C  +        G+  + ++
Sbjct: 698  FNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESST-----AEGKKKKRKM 752

Query: 961  EWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRK 1009
                V  A+G  +   F    +    +WR        +L  + +T  +K
Sbjct: 753  ILMIVMAAIGAFLLSLFCCFYVYTLLKWR-------KKLKQQSTTGEKK 794

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  238 bits (608), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 257/877 (29%), Positives = 391/877 (44%), Gaps = 128/877 (14%)

Query: 148 GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLS 207
           G IP+ + S+  L+ L L+G  F G IP ++ NL  LQ LDL  NS         L G  
Sbjct: 79  GQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNS---------LTG-- 127

Query: 208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP-IVNISSISVLDLSS 266
           LL  L                ++ L  L  L LS        PP   +++ ++S LD+S+
Sbjct: 128 LLPRL----------------LSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSN 171

Query: 267 NQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW 326
           N       +   +  LSNL  L +G N F G IP  + N++ L++       FN  +P  
Sbjct: 172 NSLSGE--IPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKE 229

Query: 327 LASFSNLVHISLRSNSLQGSIT---GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLR 383
           ++   +L  + L  N L+ SI    G L NLS    +L+L S +L G IP   G   +L+
Sbjct: 230 ISKLKHLAKLDLSYNPLKCSIPKSFGELHNLS----ILNLVSAELIGLIPPELGNCKSLK 285

Query: 384 EISLSDVKMSQ----DISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLF 439
            + LS   +S     ++SEI  +  S   ++L           G L S +G +K LDSL 
Sbjct: 286 SLMLSFNSLSGPLPLELSEIPLLTFSAERNQLS----------GSLPSWMGKWKVLDSLL 335

Query: 440 LSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVG 499
           L++N  SG IP  +     L+ + L++N L G +    L     L + D+SGN L+  + 
Sbjct: 336 LANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPR-ELCGSGSLEAIDLSGNLLSGTIE 394

Query: 500 PDWIPPFQLEKLDLQSCHLGPTFP--FWLLSQNVLGYLDISRSGIQDTVPARFWEASPQL 557
             +     L +L L +  +  + P   W L    L  LD+  +     +P   W+++  +
Sbjct: 395 EVFDGCSSLGELLLTNNQINGSIPEDLWKLP---LMALDLDSNNFTGEIPKSLWKSTNLM 451

Query: 558 YFLNFSNSRINGEIP-NLSKATGLRTVDLSSNNLSGTLPLISFQLES---IDLSNNAFSG 613
            F   S +R+ G +P  +  A  L+ + LS N L+G +P    +L S   ++L+ N F G
Sbjct: 452 EF-TASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQG 510

Query: 614 SISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLP------- 666
            I   L  G    L  L+L +N+  G+IPD       L+ L L  NN +G++P       
Sbjct: 511 KIPVEL--GDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYF 568

Query: 667 -----PSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
                P L  L    +  L  N LSG IPE L  C  LV +++  N  SG+IP  +  + 
Sbjct: 569 HQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASL-SRL 627

Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
           +++ IL+L  N   G  P E+     LQ L+L  N L+G IP+    L ++V ++     
Sbjct: 628 TNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLN----- 682

Query: 782 THPGITDCSLYRSCL--PRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSG 839
                    L ++ L  P P S  +           KEL +         +DLS NN SG
Sbjct: 683 ---------LTKNKLDGPVPASLGNL----------KELTH---------MDLSFNNLSG 714

Query: 840 EIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFL 899
           E+  E++ +  L  L +  N F+G IP  +G +  +E +D S N LS EIP  +  L  L
Sbjct: 715 ELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNL 774

Query: 900 NLLNLSYNYLSGEIPTSTQLQSFDASCFIGN-DLCGSPLSRNCTETVPMPQDGNGEDDED 958
             LNL+ N L GE+P+    Q    +   GN +LCG  +  +C            E  + 
Sbjct: 775 EFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKI----------EGTKL 824

Query: 959 EVEWFYVSMALG-CVVGFWFVIGPLIVNRRWRYMYSV 994
              W    + LG  ++ F FV       RRW     V
Sbjct: 825 RSAWGIAGLMLGFTIIVFVFVFSL----RRWAMTKRV 857

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  227 bits (578), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 212/697 (30%), Positives = 334/697 (47%), Gaps = 67/697 (9%)

Query: 259 ISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYND 318
           ++ LDLSS   + + +V   + GL NLVYL+L  N   G IP  + N + L  + L+ N 
Sbjct: 87  VTSLDLSS--MNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQ 144

Query: 319 FNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGR 378
           F  SIP  +   S L   ++ +N L G +   + +L  ++E L   +  L G +PRS G 
Sbjct: 145 FGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDL-YNLEELVAYTNNLTGPLPRSLGN 203

Query: 379 LCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSL 438
           L                             ++L ++        G++ ++IG   +L  L
Sbjct: 204 L-----------------------------NKLTTFRAGQNDFSGNIPTEIGKCLNLKLL 234

Query: 439 FLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKV 498
            L+ N ISG +P  +G L  L+ V+L  N   G++ +  + NL+ L +  + GN+L   +
Sbjct: 235 GLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPK-DIGNLTSLETLALYGNSLVGPI 293

Query: 499 GPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLY 558
             +      L+KL L    L  T P  L   + +  +D S + +   +P    + S +L 
Sbjct: 294 PSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKIS-ELR 352

Query: 559 FLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQ----LESIDLSNNAFSG 613
            L    +++ G IPN LSK   L  +DLS N+L+G +P   FQ    +  + L +N+ SG
Sbjct: 353 LLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIP-PGFQNLTSMRQLQLFHNSLSG 411

Query: 614 SISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG 673
            I   L  G+   L V++   N  SG+IP        L +LNLG+N   GN+PP +    
Sbjct: 412 VIPQGL--GLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCK 469

Query: 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNI 733
           SL  L +  N L+G+ P  L     L ++ +D N+FSG +P  IG     +  L+L +N 
Sbjct: 470 SLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIG-TCQKLQRLHLAANQ 528

Query: 734 FDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYR 793
           F    P E+  L++L   ++  N+L+G IP  I+N   +  +D         ++  S   
Sbjct: 529 FSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLD---------LSRNSFIG 579

Query: 794 SCLPRPRSFSDPIEKAFLVMKGKELEYS-----TILYLVALIDLSK--NNFSGEIPVEVT 846
           S  P   S          +++  E  +S     TI  L  L +L    N FSG IP ++ 
Sbjct: 580 SLPPELGSLHQ-----LEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLG 634

Query: 847 DLVALR-SLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLS 905
            L +L+ ++NLSYN FSG IP  IG +  +  +  +NN LS EIP +  NL+ L   N S
Sbjct: 635 LLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFS 694

Query: 906 YNYLSGEIPTSTQLQSFDASCFIGND-LCGSPLSRNC 941
           YN L+G++P +   Q+   + F+GN  LCG  L R+C
Sbjct: 695 YNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHL-RSC 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  224 bits (570), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 210/708 (29%), Positives = 321/708 (45%), Gaps = 103/708 (14%)

Query: 279 VFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL 338
           + GL +L  LDL  N   G IP  + N +SL  L L+ N F+  IP  +    +L ++ +
Sbjct: 93  IGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLII 152

Query: 339 RSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISE 398
            +N + GS+   + NL  S+  L   S  + GQ+PRS G L                   
Sbjct: 153 YNNRISGSLPVEIGNL-LSLSQLVTYSNNISGQLPRSIGNL------------------- 192

Query: 399 ILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSS 458
                      RL S+      I G L S+IG  +SL  L L+ N +SG +P  +G L  
Sbjct: 193 ----------KRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKK 242

Query: 459 LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHL 518
           L +V+L  N   G++    ++N + L +  +  N L   +  +      LE L L    L
Sbjct: 243 LSQVILWENEFSGFIPR-EISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGL 301

Query: 519 GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLSKA 577
             T P  + + +    +D S + +   +P         L  L    +++ G IP  LS  
Sbjct: 302 NGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIE-GLELLYLFENQLTGTIPVELSTL 360

Query: 578 TGLRTVDLSSNNLSGTLPLISFQ----LESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
             L  +DLS N L+G +PL  FQ    L  + L  N+ SG+I P L  G   +L VL++ 
Sbjct: 361 KNLSKLDLSINALTGPIPL-GFQYLRGLFMLQLFQNSLSGTIPPKL--GWYSDLWVLDMS 417

Query: 634 NNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESL 693
           +N  SG IP        + +LNLG NN +GN+P  + +  +L  L L +N+L GR P +L
Sbjct: 418 DNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNL 477

Query: 694 SNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDL 753
                + ++ +  N+F G IP  +G   S++  L L  N F G+ P E+  L+ L  L++
Sbjct: 478 CKQVNVTAIELGQNRFRGSIPREVG-NCSALQRLQLADNGFTGELPREIGMLSQLGTLNI 536

Query: 754 GYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVM 813
             N L+G +P  I N   +  +D            C+ +   LP                
Sbjct: 537 SSNKLTGEVPSEIFNCKMLQRLDM----------CCNNFSGTLPS--------------- 571

Query: 814 KGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMK 873
                E  + LY + L+ LS NN SG IPV + +L  L  L +  N F+G IP  +G++ 
Sbjct: 572 -----EVGS-LYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLT 625

Query: 874 SIEV-IDFSNNQLSEEIPRSVSNLTFLNLL------------------------NLSYNY 908
            +++ ++ S N+L+ EIP  +SNL  L  L                        N SYN 
Sbjct: 626 GLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNS 685

Query: 909 LSGEIPTSTQLQSFDASCFIGND-LCGSPLSRNCTETVPM-PQDGNGE 954
           L+G IP    L++   S FIGN+ LCG PL++ C +T P  P    G+
Sbjct: 686 LTGPIPL---LRNISMSSFIGNEGLCGPPLNQ-CIQTQPFAPSQSTGK 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  223 bits (567), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 205/688 (29%), Positives = 309/688 (44%), Gaps = 109/688 (15%)

Query: 325 NWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLRE 384
           N+ + +SNL+ I+L  N+  G +   L   S  ++ LDLS   + G              
Sbjct: 146 NFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITG-------------- 191

Query: 385 ISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNS 444
                      IS +    SSC+S  +   D +G  I G+++  + +  +L SL LS+N+
Sbjct: 192 ----------PISGLTIPLSSCVS--MTYLDFSGNSISGYISDSLINCTNLKSLNLSYNN 239

Query: 445 ISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIP 504
             G IP S G L  L+ + LS+N L G                              WIP
Sbjct: 240 FDGQIPKSFGELKLLQSLDLSHNRLTG------------------------------WIP 269

Query: 505 P------FQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLY 558
           P        L+ L L   +     P  L S + L  LD+S + I    P     +   L 
Sbjct: 270 PEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQ 329

Query: 559 FLNFSNSRINGEIP-NLSKATGLRTVDLSSNNLSGTLPLI----SFQLESIDLSNNAFSG 613
            L  SN+ I+G+ P ++S    LR  D SSN  SG +P      +  LE + L +N  +G
Sbjct: 330 ILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTG 389

Query: 614 SISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG 673
            I P +      EL+ ++L  N  +G IP    N   L       NN  G +PP +G L 
Sbjct: 390 EIPPAISQC--SELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQ 447

Query: 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNI 733
           +L  L L  N L+G IP    NC+ +  ++   N+ +G++P   G   S + +L L +N 
Sbjct: 448 NLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFG-ILSRLAVLQLGNNN 506

Query: 734 FDGQFPTELCFLTSLQILDLGYNNLSGAIP---------KCISNLSAMVTVDYP--LGDT 782
           F G+ P EL   T+L  LDL  N+L+G IP         K +S L +  T+ +   +G++
Sbjct: 507 FTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNS 566

Query: 783 HPGITDCSLYRSCLPR-------------PRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829
             G+     +    P               R +S PI   F         Y TI YL   
Sbjct: 567 CKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFT-------RYQTIEYL--- 616

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
            DLS N   G+IP E+ +++AL+ L LS+N  SG IP +IG +K++ V D S+N+L  +I
Sbjct: 617 -DLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQI 675

Query: 890 PRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGN-DLCGSPLS--RNCTETVP 946
           P S SNL+FL  ++LS N L+G IP   QL +  A+ +  N  LCG PL   +N    +P
Sbjct: 676 PESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNPGLCGVPLPECKNGNNQLP 735

Query: 947 M-PQDGNGEDDEDEVEWFYVSMALGCVV 973
              ++G           +  S+ LG ++
Sbjct: 736 AGTEEGKRAKHGTRAASWANSIVLGVLI 763

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  220 bits (560), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 224/724 (30%), Positives = 333/724 (45%), Gaps = 93/724 (12%)

Query: 338 LRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPR--SFGRLCNLREISLSD------ 389
           L ++ + GS++GF    SAS+  LDLS   L G +    S G    L+ +++S       
Sbjct: 106 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 163

Query: 390 VKMSQDIS----EILDIFSSCISD-RLESWDMT-GCKIFGHLT---------SQIGHFKS 434
            K+S  +     E+LD+ ++ IS   +  W ++ GC    HL            +    +
Sbjct: 164 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 223

Query: 435 LDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNAL 494
           L+ L +S N+ S  IP  LG  S+L+ + +S N L G  S   ++  ++L   ++S N  
Sbjct: 224 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQF 281

Query: 495 TLKVGPDWIPPFQLEKLDL----QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
              VGP  IPP  L+ L      ++   G    F   + + L  LD+S +     VP  F
Sbjct: 282 ---VGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 336

Query: 551 WEASPQLYFLNFSNSRINGEIP--NLSKATGLRTVDLSSNNLSGTLPL----ISFQLESI 604
              S        SN+  +GE+P   L K  GL+ +DLS N  SG LP     +S  L ++
Sbjct: 337 GSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 395

Query: 605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN 664
           DLS+N FSG I P LC   +  LQ L L+NN F+G+IP    N   L  L+L  N  +G 
Sbjct: 396 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 455

Query: 665 LPPSLGSLG------------------------SLTLLHLQKNSLSGRIPESLSNCNRLV 700
           +P SLGSL                         +L  L L  N L+G IP  LSNC  L 
Sbjct: 456 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 515

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
            +++  N+ +G+IP WIG +  ++ IL L +N F G  P EL    SL  LDL  N  +G
Sbjct: 516 WISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 574

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSC----------------LPRPRSFSD 804
            IP  +   S  +  ++  G  +  I +  + + C                L R  S  +
Sbjct: 575 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRN 633

Query: 805 PIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR 864
           P      V  G           +  +D+S N  SG IP E+  +  L  LNL +N  SG 
Sbjct: 634 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 693

Query: 865 IPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDA 924
           IPD +G ++ + ++D S+N+L   IP+++S LT L  ++LS N LSG IP   Q ++F  
Sbjct: 694 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 753

Query: 925 SCFIGN-DLCGSPLSRNCTETVPMPQDGNGEDDEDEVEW---FYVSMALGCVVGFWFVIG 980
           + F+ N  LCG PL R C    P   DG                 S+A+G +  F  + G
Sbjct: 754 AKFLNNPGLCGYPLPR-CD---PSNADGYAHHQRSHGRRPASLAGSVAMGLLFSFVCIFG 809

Query: 981 PLIV 984
            ++V
Sbjct: 810 LILV 813

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1011
224072885	1024	predicted protein [Populus trichocarpa]	0.931	0.919	0.492	0.0
315436720	1020	verticillium wilt resistance-like protei	0.957	0.949	0.474	0.0
356561552	1019	PREDICTED: LRR receptor-like serine/thre	0.930	0.923	0.464	0.0
356561667	1018	PREDICTED: leucine-rich repeat receptor	0.934	0.928	0.465	0.0
356561665	1072	PREDICTED: LRR receptor-like serine/thre	0.940	0.887	0.448	0.0
356561655	1052	PREDICTED: probable leucine-rich repeat	0.927	0.891	0.465	0.0
209970607	1045	M18S-3Ap [Malus floribunda]	0.963	0.932	0.448	0.0
356566257	1086	PREDICTED: LRR receptor-like serine/thre	0.934	0.870	0.451	0.0
356561661	1020	PREDICTED: LRR receptor-like serine/thre	0.932	0.924	0.461	0.0
255581850	1082	leucine-rich repeat receptor protein kin	0.955	0.892	0.446	0.0

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1011 (49%), Positives = 651/1011 (64%), Gaps = 69/1011 (6%)

Query: 32   CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLN 91
            C + ER+ALLKFK DLKDPSNRL SW  AG G DCC W GV+CDN TGHV+ELRL     
Sbjct: 37   CSQIERDALLKFKHDLKDPSNRLASW--AGFGGDCCTWRGVICDNVTGHVIELRL----- 89

Query: 92   HPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGG-GI 150
              IS+    A Y +       +YE Y +    G+INPSL+  +HL YLDL  N FGG  I
Sbjct: 90   RSISF----ADY-LASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQI 144

Query: 151  PRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN-SELYVDNLSWLPGLSLL 209
            P+F+G +G LK+L+LS AGF G IPH LGNLS L YL+L +  S+  V+NL+WL  LS L
Sbjct: 145  PKFIGLIGSLKHLDLSDAGFAGTIPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQLSSL 204

Query: 210  QHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQF 269
            + LDL  V+LG  F+W   IN+L SL  L LS CQL    P   VN SS+S+LDLSSN  
Sbjct: 205  EFLDLSLVHLGNVFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYV 264

Query: 270  DQNSLVL----SWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPN 325
            D++++ +     WV  L  L+ L+L +N+FQG IP GLQNLT L+ LDLS N F+SSIP 
Sbjct: 265  DESAISMLNFPRWVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPE 324

Query: 326  WLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLS---SQQLEGQIPRSFGRLCNL 382
            WL  F +L  ++L SN+LQG ++  + N+++ I  LDLS     + EG IP SF +LCNL
Sbjct: 325  WLYGFEHLKLLNLGSNNLQGVLSSAIGNMTSLIS-LDLSLNHELKFEGGIPGSFKKLCNL 383

Query: 383  REISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH 442
            R +SLS+VK++QDI+E+L++   C+S+ +ES D+ GC +FG LT+ +G F++L  L L  
Sbjct: 384  RTLSLSNVKLNQDIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRS 443

Query: 443  NSISGLIPSSLGGLSSLERVVLSNNTLKGYL------------------------SEIHL 478
            NSISG IP +LG L SL  +VLS+N L G L                        SE+H 
Sbjct: 444  NSISGPIPMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHF 503

Query: 479  ANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDIS 538
            ANL  L +F  +GN L L+V PDWIPP QL  +DL+S ++GP FP W+     L YLDIS
Sbjct: 504  ANLKNLRNFSAAGNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDIS 562

Query: 539  RSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN---LSKATGLRTVDLSSNNLSGTLP 595
             S I  T+P  FW  S ++ +LN S+++I G IP+   L        VDLSSN   G LP
Sbjct: 563  NSSISSTIPIWFWTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLP 622

Query: 596  LISFQLESIDLSNNAFSGSISPVLCNGMR--GELQVLNLENNSFSGEIPDCWMNFLYLRV 653
             I   + ++DLSNN+FSGS+   LC+ +     +QVLNL  N  SG IPDCW ++ YL  
Sbjct: 623  SIFSNVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVA 682

Query: 654  LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI 713
            + L NN  +GN+P S+G+L  L  LH++ +SLSG++P SL NC +L++L++  N+  G +
Sbjct: 683  IKLSNNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSM 742

Query: 714  PTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMV 773
            P WIG++FSSMV+LN+R+N F G+ P ELC L SLQILDL +N LS +IP C + LSAM 
Sbjct: 743  PAWIGKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMA 802

Query: 774  TVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLS 833
            T +  LG  +                 S S   +   LVMKGK +EYSTIL  V  IDLS
Sbjct: 803  TRNDSLGKIYLD---------------SGSSTFDNVLLVMKGKVVEYSTILKFVRSIDLS 847

Query: 834  KNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV 893
             N   GEIP EVT L  L+SLNLS N  +GRIP+ IG+++ +E +DFS NQLS EIP+S+
Sbjct: 848  SNALCGEIPEEVTRLSELQSLNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSM 907

Query: 894  SNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQDGNG 953
            S+LTFL+ LNLS N L G IP+ TQLQSF  S F GN+LCG PLS+NC+       +   
Sbjct: 908  SDLTFLSHLNLSDNRLRGRIPSGTQLQSFGPSSFSGNELCGPPLSKNCSVDNKFHVEHER 967

Query: 954  EDDEDEVE--WFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDK 1002
            E+D + ++  WFYVSM LG +VGFW V+GPL+ NRRWRY+Y  FLDRL D+
Sbjct: 968  EEDGNGLKGRWFYVSMVLGFIVGFWGVVGPLMFNRRWRYVYYHFLDRLRDQ 1018

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1054 (47%), Positives = 649/1054 (61%), Gaps = 86/1054 (8%)

Query: 1    MNIVVSFVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGA 60
            M +VV+ + L LL + T +  +   A     C E ER+ALLK K+DL DPS RL SW   
Sbjct: 7    MKVVVTSIFLALL-IETSTFEYVCAANRNVSCPEVERQALLKLKQDLIDPSGRLASW--- 62

Query: 61   GDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERS 120
            G   +CC WSGV+CDN TG+V++LRL NPL+               Y  +    EAY + 
Sbjct: 63   GTNLNCCNWSGVICDNLTGNVIQLRLRNPLDP--------------YNGFYIPSEAYAKM 108

Query: 121  KFGGKINPSLLHFQHLNYLDLSGNSFGG-GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLG 179
             F GKINPSLL  +HL YLDLSG++FGG  IP FLGSM  L+YLNLS AGF G++P QLG
Sbjct: 109  WFSGKINPSLLDLKHLRYLDLSGSNFGGIQIPEFLGSMHTLRYLNLSAAGFGGVVPPQLG 168

Query: 180  NLSKLQYLDLVENSEL-YVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVL 238
            NL+ L  LDL + S L Y +NL WL  L  L+HLDL  VNL KA DW    N+L SL  +
Sbjct: 169  NLTNLHVLDLHDFSSLVYAENLQWLSHLVKLKHLDLSSVNLSKASDWFQVTNTLPSLVEI 228

Query: 239  RLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGS 298
             LSGCQL        VN SS+S+LDLSSN F  N L+  W+F L++L+ LDL  N+FQG 
Sbjct: 229  HLSGCQLHRLPLQADVNFSSLSILDLSSNSF-SNPLIPGWIFKLNSLLSLDLSHNNFQGQ 287

Query: 299  IPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASI 358
            +P GL++L+SLR+L+L +N+F S+IP+WL   ++L  ++L SN   GSI+    NL+ S+
Sbjct: 288  LPHGLRSLSSLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISNGFQNLT-SL 346

Query: 359  EVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS--CISDRLESWDM 416
              LDLS  +L G +P S G LC+L++I LS + +S+D+SEIL   SS  C+ + LES  +
Sbjct: 347  TTLDLSDNELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYL 406

Query: 417  TGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSL----------------- 459
              C+IFGHLT +I  FK+L  L LS NSISG IP+SLG L+SL                 
Sbjct: 407  DSCEIFGHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPES 466

Query: 460  -------ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLD 512
                   E++ LS+N L+G +SE+H ANL++L  F  SGN L L+  P+W+PPFQL  + 
Sbjct: 467  IGQLWKMEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMA 526

Query: 513  LQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP 572
            L S HLGP FP WL SQ    YLDIS +GI DT P  FW  S   + LN S+++I GE+P
Sbjct: 527  LSSWHLGPKFPSWLRSQRDFVYLDISVTGIIDTFPNWFWNLSTIYFSLNLSHNQIYGELP 586

Query: 573  N---LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGE--L 627
            +    S    L  VDLS N+  G LP +S ++ ++DLS+N FSG IS +LC  M     L
Sbjct: 587  HRIGTSPVADLVYVDLSFNHFDGPLPCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWL 646

Query: 628  QVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSG 687
            + L+L +N  SGEIPDCWMN+  +  ++L NN+ +G +P S+GSL  L  LHL+KN+LSG
Sbjct: 647  ETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSG 706

Query: 688  RIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTS 747
             +P SL NC  L+++++  N F G+IP WIGEK S  +I++L SN F GQ P  LC L+ 
Sbjct: 707  VLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSY 766

Query: 748  LQILDLGYNNLSGAIPKCISNLSAMVT-------VDYPLGDTHPGITDCSLYRSCLPRPR 800
            L ILDL +NNLSG IPKC  NLSAM         + Y  G                    
Sbjct: 767  LTILDLAHNNLSGTIPKCFMNLSAMAANQNSSNPISYAFGH------------------- 807

Query: 801  SFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNH 860
             F   +E   L++KG  LEYS+ L LV  +DLS NN +GEIP  +TDL+ LR LNLS N 
Sbjct: 808  -FGTSLETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQ 866

Query: 861  FSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQ 920
              GRIP +IG ++ +E ID S NQL  EIP S+S LTFL+ LNLS N L+G+IP+STQLQ
Sbjct: 867  LKGRIPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQ 926

Query: 921  SFDASCFIGNDLCGSPLSRNCTETVPMPQD------GNGEDDEDEVEWFYVSMALGCVVG 974
            SFD S + GN LCG PL   C+       D        G+  E +  WFY SMA G VVG
Sbjct: 927  SFDISSYDGNHLCGPPLLEICSTDATTSSDHNNNENNEGDGLEVDWLWFYASMAFGFVVG 986

Query: 975  FWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIR 1008
            FW V+GPL+ N+ WR+ Y   L+RL  K     R
Sbjct: 987  FWVVMGPLLFNKSWRFRYFRILERLEYKIRNGHR 1020

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561552|ref|XP_003549045.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max]

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1013 (46%), Positives = 612/1013 (60%), Gaps = 72/1013 (7%)

Query: 32   CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLN 91
            CI SERE LLKFK +L DPSNRL SWN   +  +CC W GV+C N T H+L+L L     
Sbjct: 26   CIPSERETLLKFKNNLIDPSNRLWSWNH--NHTNCCHWYGVLCHNITSHLLQLHLN---- 79

Query: 92   HPISYHTSPAQYSIIYRTYGA----EYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSF- 146
                     +  S  Y  YG     + EAY R  FGG+I+P L   +HLNYLDLSGN+F 
Sbjct: 80   ---------SSDSAFYHGYGYGSFYDIEAYRRWSFGGEISPCLADLKHLNYLDLSGNTFL 130

Query: 147  --GGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL--VENSELYVDNLSW 202
              G  IP FLG+M  L +LNLS  GF G IP Q+GNLS L YLDL   +   L  +N+ W
Sbjct: 131  GEGMSIPSFLGTMTSLTHLNLSATGFYGKIPPQIGNLSNLVYLDLSYFDLEPLLAENVEW 190

Query: 203  LPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVL 262
            +  +  L++LDL   NL KAF W   + SL SL  L LSGC+L H++ P ++N SS+  L
Sbjct: 191  VSSMWKLEYLDLSYANLSKAFHWLHTLQSLPSLTHLYLSGCKLPHYNEPSLLNFSSLQTL 250

Query: 263  DLSSNQFDQN-SLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS 321
             LS   +    S V  W+F L  LV L L  N FQG IP G++NLT L++LDLS+N F+S
Sbjct: 251  HLSRTSYSPAISFVPKWIFKLKKLVSLQLLDNGFQGPIPGGIRNLTLLQNLDLSFNSFSS 310

Query: 322  SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCN 381
            SIP+ L     L  ++L  N+L G+I+  L NL++ +E LDLS  QLEG IP S G LCN
Sbjct: 311  SIPDCLYGLHRLKFLNLMGNNLHGTISDALGNLTSLVE-LDLSHNQLEGNIPTSLGNLCN 369

Query: 382  LREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLS 441
            LR I LS +K++Q ++E+L+I + CIS  L    +   ++ G+LT  IG FK++D+L  S
Sbjct: 370  LRVIDLSYLKLNQQVNELLEILAPCISHGLTRLAVQSSRLSGNLTDHIGAFKNIDTLLFS 429

Query: 442  HNSISGLIPSSLGGLSSLERVVLS------------------------NNTLKGYLSEIH 477
            +NSI G +P S G LSSL  + LS                         N   G + E  
Sbjct: 430  NNSIGGALPRSFGKLSSLRYLDLSMNKFSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDD 489

Query: 478  LANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDI 537
            LANL+ L     SGN  TL VGP+WIP FQL  L++ S  LGP+FP W+ SQN L Y+ +
Sbjct: 490  LANLTSLTEIHASGNNFTLTVGPNWIPNFQLNYLEVTSWQLGPSFPLWIQSQNQLEYVGL 549

Query: 538  SRSGIQDTVPARFWEASPQLYFLNFSNSRINGEI-PNLSKATGLRTVDLSSNNLSGTLPL 596
            S +GI D++P + WEA  Q+ +LN S + I+GEI   L     + T+DLSSN+L G LP 
Sbjct: 550  SNTGIFDSIPTQMWEALSQVLYLNLSRNHIHGEIGTTLKNPISIPTIDLSSNHLCGKLPY 609

Query: 597  ISFQLESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLENNSFSGEIPDCWMNFLYLRVL 654
            +S  +  +DLS+N+FS S++  LCN       L+ LNL +N+ SGEIPDCWMN+  L  +
Sbjct: 610  LSSDVFQLDLSSNSFSESMNDFLCNDQDEPMRLEFLNLASNNLSGEIPDCWMNWTLLADV 669

Query: 655  NLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIP 714
            NL +N+F GNLP S+GSL  L  L ++ N+LSG  P SL   N+L+SL++  N  SG IP
Sbjct: 670  NLQSNHFVGNLPQSMGSLAELQSLQIRNNTLSGIFPTSLKKNNQLISLDLGENNLSGTIP 729

Query: 715  TWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVT 774
            TW+GE   ++ IL LRSN F G  P E+C ++ LQ+LDL  NNLSG IP C SNLSAM  
Sbjct: 730  TWVGENLLNVKILRLRSNSFAGHIPNEICQMSHLQVLDLAQNNLSGNIPSCFSNLSAMTL 789

Query: 775  VDYPLGDTHPGITDCSLYRSCL-PRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLS 833
             +          TD  +Y      R  S    I    L +KG+  EY  IL LV  IDLS
Sbjct: 790  KNQS--------TDPRIYSQAQGGRYYSSRQSIVSVLLWLKGRGDEYRNILGLVTSIDLS 841

Query: 834  KNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV 893
             N   GEIP E+T L  L  LN+S+N   G IP  IG M+S++ IDFS NQL  EIP S+
Sbjct: 842  SNKLLGEIPREITYLNGLNFLNMSHNQLIGHIPQGIGNMRSLQSIDFSRNQLFGEIPPSI 901

Query: 894  SNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMP----Q 949
            +NL+FL++L+LSYN+L G IPT TQLQ+F+AS FIGN+LCG PL  NC+           
Sbjct: 902  ANLSFLSMLDLSYNHLKGNIPTGTQLQTFNASSFIGNNLCGPPLPINCSSNGKTHSYEGS 961

Query: 950  DGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDK 1002
            DG+G      V WF+VSM +G +VGFW VI PL++ R WRY Y  FLD +  K
Sbjct: 962  DGHG------VNWFFVSMTIGFIVGFWIVIAPLLICRSWRYAYFHFLDHVWFK 1008

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561667|ref|XP_003549101.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1008 (46%), Positives = 611/1008 (60%), Gaps = 63/1008 (6%)

Query: 32   CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLN 91
            CI SERE LLK K +L DPSNRL SWN   +  +CC W GV+C N T HVL+L L     
Sbjct: 26   CIPSERETLLKIKNNLNDPSNRLWSWNH--NHTNCCHWYGVLCHNVTSHVLQLHLNTTF- 82

Query: 92   HPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSF---GG 148
                   S A Y   Y     + EAYE+S+FGG+I+P L   +HLN+L+LSGN F   G 
Sbjct: 83   -------SAAFYDGYYH---FDEEAYEKSQFGGEISPCLADLKHLNHLNLSGNYFLGAGM 132

Query: 149  GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS--ELYVDNLSWLPGL 206
             IP FLG+M  L +L+LS  GF G IP Q+GNLS L YLDL   S   +  +N+ W+  +
Sbjct: 133  AIPSFLGTMTSLTHLDLSLTGFMGKIPSQIGNLSNLVYLDLGGYSVEPMLAENVEWVSSM 192

Query: 207  SLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSS 266
              L++L L   NL KAF W   + SL SL  L LSGC L H++ P ++N SS+  L LS 
Sbjct: 193  WKLEYLHLSYANLSKAFHWLHTLQSLPSLTHLDLSGCTLPHYNEPSLLNFSSLQTLHLSF 252

Query: 267  NQFDQN-SLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPN 325
              +    S V  W+F L  LV L L  N+ QG IP G++NLT L++L LS N F+SSIP+
Sbjct: 253  TSYSPAISFVPKWIFKLKKLVSLQLWGNEIQGPIPGGIRNLTLLQNLYLSGNSFSSSIPD 312

Query: 326  WLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREI 385
             L     L  ++L  N L G+I+  L NL++ +E LDLS  QLEG IP S G LCNLR+I
Sbjct: 313  CLYGLHRLKFLNLGDNHLHGTISDALGNLTSLVE-LDLSGNQLEGNIPTSLGNLCNLRDI 371

Query: 386  SLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSI 445
              S++K++Q ++E+L+I + CIS  L    +   ++ GHLT  IG FK+++ L  S+NSI
Sbjct: 372  DFSNLKLNQQVNELLEILAPCISHGLTRLAVQSSRLSGHLTDYIGAFKNIERLDFSNNSI 431

Query: 446  SGLIPSSLGGLSSLERVVLSNNTLKG------------------------YLSEIHLANL 481
             G +P S G  SSL  + LS N   G                         + E  LANL
Sbjct: 432  GGALPRSFGKHSSLRYLDLSTNKFSGNPFESLGSLSKLSSLYIGGNLFQTVVKEDDLANL 491

Query: 482  SKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSG 541
            + L+    SGN  TLKVGP+W+P FQL  LD++S  LGP+FP W+ SQN L YLD+S +G
Sbjct: 492  TSLMEIHASGNNFTLKVGPNWLPNFQLFHLDVRSWQLGPSFPSWIKSQNKLEYLDMSNAG 551

Query: 542  IQDTVPARFWEASPQLYFLNFSNSRINGEI-PNLSKATGLRTVDLSSNNLSGTLPLISFQ 600
            I D++P + WEA PQ+ +LN S++ I+GE    L     +  +DLSSN+L G LP +S  
Sbjct: 552  IIDSIPTQMWEALPQVLYLNLSHNHIHGESGTTLKNPISIPVIDLSSNHLCGKLPYLSSD 611

Query: 601  LESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGN 658
            +  +DLS+N+FS S++  LCN      +LQ LNL +N+ SGEIPDCWMN+ +L  +NL +
Sbjct: 612  VSQLDLSSNSFSESMNDFLCNDQDEPMQLQFLNLASNNLSGEIPDCWMNWTFLGNVNLQS 671

Query: 659  NNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIG 718
            N+F GNLP S+GSL  L  L ++ N+ SG  P SL   N+L+SL++  N  SG IPTW+G
Sbjct: 672  NHFVGNLPQSMGSLAELQSLQIRNNTFSGIFPSSLKKNNQLISLDLGENNLSGCIPTWVG 731

Query: 719  EKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYP 778
            EK   + IL LRSN F G  P E+C ++ LQ+LDL  NNLSG IP C  NLSAM   +  
Sbjct: 732  EKLLKVKILRLRSNSFAGHIPNEICQMSHLQVLDLAENNLSGNIPSCFCNLSAMTLKNQ- 790

Query: 779  LGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFS 838
               T+P I     Y        SF+  I    L +KG+  EY   L LV  IDLS N   
Sbjct: 791  --STYPRIYSEEQYAG---SSYSFNYGIVSVLLWLKGRGDEYKNFLGLVTDIDLSSNKLL 845

Query: 839  GEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTF 898
            G+IP E+T L  L  LNLS+N   G IP  IG M+SI+ IDFS NQLS EIP ++SNL+F
Sbjct: 846  GKIPREITYLNGLNFLNLSHNQLIGHIPQGIGNMRSIQTIDFSRNQLSGEIPPTISNLSF 905

Query: 899  LNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMP----QDGNGE 954
            L++L+LSYN+L G IPT TQLQ+FDAS FIGN+LCG PL  NC+           DG+G 
Sbjct: 906  LSMLDLSYNHLKGNIPTGTQLQTFDASSFIGNNLCGPPLPINCSSNGKTHSYEGSDGHG- 964

Query: 955  DDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDK 1002
                 V WF+VS  +G VVGFW VI PL++ R WRY Y  FLD +  K
Sbjct: 965  -----VNWFFVSATIGFVVGFWIVIAPLLICRSWRYAYFHFLDHVWFK 1007

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561665|ref|XP_003549100.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/1055 (44%), Positives = 618/1055 (58%), Gaps = 104/1055 (9%)

Query: 32   CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPL- 90
            CI SERE LLK K +L DPSNRL SWN   +  +CC W GV+C N T H+L+L L   + 
Sbjct: 27   CIPSERETLLKIKNNLIDPSNRLWSWNH--NNTNCCHWYGVLCHNVTSHLLQLHLNTTVP 84

Query: 91   NHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSF---G 147
                        Y  ++R  G   EAY R  FGG+I+P L   +HLNYLDLSGN F   G
Sbjct: 85   AFEYDDGYEYDYYDEVFR--GLNEEAYRRRSFGGEISPCLADLKHLNYLDLSGNEFLGEG 142

Query: 148  GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLS 207
              IP FLG+M  L +LNLS  GF+G IP Q+GNLS L YLDL   S  + +N+ W+  + 
Sbjct: 143  MSIPSFLGTMTSLTHLNLSHTGFRGKIPPQIGNLSNLVYLDL---SNYHAENVEWVSSMW 199

Query: 208  LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSN 267
             L++LDL   NL KAF W   + SL SL  L LSGC+L H++ P ++N SS+  LDLS  
Sbjct: 200  KLEYLDLSSANLSKAFHWLHTLQSLPSLTHLYLSGCKLPHYNEPSLLNFSSLQTLDLSDT 259

Query: 268  QFDQN-SLVLSWVFGLSNLVYLDLGSN-DFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPN 325
             +    S V  W+F L  LV L L  N + QG IP G++NLT L++LDLS+N F+SSIPN
Sbjct: 260  SYSPAISFVPKWIFKLKKLVSLQLSDNYEIQGPIPCGIRNLTHLQNLDLSFNSFSSSIPN 319

Query: 326  WLASFSNLVHISLRSNSLQGSITGFLANLSASIEV------------------------- 360
             L     L  ++LR N+L G+I+  L NL++ +E+                         
Sbjct: 320  CLYGLHRLKFLNLRYNNLHGTISDALGNLTSLVELDLSVNQLEGTIPTSFGNLTSLVELD 379

Query: 361  ----------------------LDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISE 398
                                  LDLS+ QLEG IP S G LCNLR I LS +K++Q ++E
Sbjct: 380  LSLNQLEGTIPISLGNLTSLVELDLSANQLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNE 439

Query: 399  ILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSS 458
            +L+I + CIS  L    +   ++ G+LT  IG FK+++ L   +NSI G +P S G LSS
Sbjct: 440  LLEILAPCISHGLTRLAVQSSRLSGNLTDHIGAFKNIEQLRFYNNSIGGALPRSFGKLSS 499

Query: 459  LERVVLS------------------------NNTLKGYLSEIHLANLSKLVSFDVSGNAL 494
            L  + LS                         N   G + E  LANL+ L  F  SGN  
Sbjct: 500  LRYLDLSINKFSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLTSLTGFVASGNNF 559

Query: 495  TLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEAS 554
            TLKVGP+WIP FQL  L++ S  LGP+FP W+ SQN L Y+ +S +GI D++P + WEA 
Sbjct: 560  TLKVGPNWIPNFQLTYLEVTSWQLGPSFPLWIQSQNKLKYVGLSNTGIFDSIPTQMWEAL 619

Query: 555  PQLYFLNFSNSRINGEI-PNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSG 613
             Q+ +LN S + I+GEI   L     +RT+DLSSN+L G LP +S  +  +DLS+N+FS 
Sbjct: 620  SQVLYLNLSRNHIHGEIGTTLKNPISIRTIDLSSNHLCGKLPYLSSDVHQLDLSSNSFSE 679

Query: 614  SISPVLCNGMRGE--LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGS 671
            S++  LCN       L+ LNL +N+ SGEIPDCWMN+ +L  +NL +N+F GNLP S+GS
Sbjct: 680  SMNDFLCNDQDKPILLEFLNLASNNLSGEIPDCWMNWTFLADVNLQSNHFVGNLPQSMGS 739

Query: 672  LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRS 731
            L  L  L ++ N+LSG  P SL   N+L+SL++  N  SG IPTW+GE   ++ IL LRS
Sbjct: 740  LADLQSLQIRNNTLSGIFPTSLKKNNQLISLDLGENNLSGTIPTWVGENLLNVKILRLRS 799

Query: 732  NIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSL 791
            N F G  P E+C ++ LQ+LDL  NNLSG IP C SNLSAM   +     T P I     
Sbjct: 800  NRFGGHIPNEICQMSLLQVLDLAQNNLSGNIPSCFSNLSAMTLKNQ---STDPRIYSQGK 856

Query: 792  YRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVAL 851
            Y        S ++ I    L +KG+  EY  IL LV  IDLS N   GEIP E+T L  L
Sbjct: 857  YIVS----YSATESIVSVLLWLKGRGDEYRNILGLVTSIDLSSNKLFGEIPREITYLNGL 912

Query: 852  RSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG 911
              LN+S+N   G IP  IG M+S++ IDFS NQL  EIP S++NL+FL++L+LSYN+L G
Sbjct: 913  NFLNMSHNQLIGHIPQGIGNMRSLQSIDFSRNQLFGEIPPSIANLSFLSMLDLSYNHLKG 972

Query: 912  EIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMP----QDGNGEDDEDEVEWFYVSM 967
             IPT TQLQ+FDAS FIGN+LCG PL  NC+           DG+G      V WF+VSM
Sbjct: 973  NIPTGTQLQTFDASSFIGNNLCGPPLPINCSSNGKTHSYEGSDGHG------VNWFFVSM 1026

Query: 968  ALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDK 1002
             +G +VGFW VI PL++ R WRY Y  FLD +  K
Sbjct: 1027 TVGFIVGFWIVIAPLLICRSWRYAYFHFLDHVWFK 1061

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561655|ref|XP_003549095.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Glycine max]

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/1009 (46%), Positives = 615/1009 (60%), Gaps = 71/1009 (7%)

Query: 32   CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLN 91
            CI SERE LLK K +L DPSNRL SWN   +  +CC W GV+C N T HVL+L L     
Sbjct: 25   CIPSERETLLKIKNNLIDPSNRLWSWNH--NHTNCCHWYGVLCHNVTSHVLQLHLNTTF- 81

Query: 92   HPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSF---GG 148
                   S A Y   Y     + EAYE+S+FGG+I+P L   +HLN+L+LSGN F   G 
Sbjct: 82   -------SAAFYDGYYH---FDEEAYEKSQFGGEISPCLADLKHLNHLNLSGNYFLGAGM 131

Query: 149  GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS--ELYVDNLSWLPGL 206
             IP FLG+M  L +L+LS  GF G IP Q+GNLS L YLDL   S   +  +N+ W+  +
Sbjct: 132  SIPSFLGTMTSLTHLDLSLTGFMGKIPSQIGNLSNLVYLDLGGYSVEPMLAENVEWVSSM 191

Query: 207  SLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSS 266
              L++L L   NL KAF W   + SL SL  L LSGC L H++ P ++N SS+  L LS 
Sbjct: 192  WKLEYLHLSYANLSKAFHWLHTLQSLPSLTHLDLSGCTLPHYNEPSLLNFSSLQTLHLSF 251

Query: 267  NQFDQN-SLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPN 325
              F    S V  W+F L  LV L L  N+ QG IP G++NLT L++LDLS N F+SSIP+
Sbjct: 252  TSFSPAISFVPKWIFKLKKLVSLQLWGNEIQGPIPGGIRNLTLLQNLDLSGNSFSSSIPD 311

Query: 326  WLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREI 385
             L     L  ++LR N L G+I+  L NL++ +E LDLS  QLEG IP S G LCNLR+I
Sbjct: 312  CLYGLHRLKFLNLRDNHLHGTISDALGNLTSLVE-LDLSGNQLEGNIPTSLGNLCNLRDI 370

Query: 386  SLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSI 445
              S++K++Q ++E+L+I + CIS  L    +   ++ GHLT  IG FK++D+L  S+NSI
Sbjct: 371  DFSNLKLNQQVNELLEILAPCISHGLTRLAVQSSRLSGHLTDHIGAFKNIDTLLFSNNSI 430

Query: 446  SGLIPSSLGGLSSLERVVLSNNTLKG------------------------YLSEIHLANL 481
             G +P S G LSSL  + LS N   G                         + E  LANL
Sbjct: 431  GGALPRSFGKLSSLRYLDLSTNKFSGNPFESLGSLCKLSSLYIGGNLFQTVVKEDDLANL 490

Query: 482  SKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSG 541
            + L+    SGN  TLKVGP+W+P FQL  LD++S  LGP+FP W+ SQN L YLD+S +G
Sbjct: 491  TSLMEIHASGNNFTLKVGPNWLPNFQLFHLDVRSWQLGPSFPSWIKSQNKLEYLDMSNAG 550

Query: 542  IQDTVPARFWEASPQLYFLNFSNSRINGEI-PNLSKATGLRTVDLSSNNLSGTLPLISFQ 600
            I D++P + WEA PQ+ +LN S++ I+GE    L     +  +DLSSN+L G LP +S  
Sbjct: 551  IIDSIPTQMWEALPQVLYLNLSHNHIHGESGTTLKNPISIPVIDLSSNHLCGKLPYLSSD 610

Query: 601  LESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGN 658
            +  +DLS+N+ S S++  LCN      +LQ LNL +N+ SGEIPDCWMN+ +L  +NL +
Sbjct: 611  VSQLDLSSNSISESMNDFLCNDQDEPMQLQFLNLASNNLSGEIPDCWMNWTFLVNVNLQS 670

Query: 659  NNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIG 718
            N+F GNLP S+GSL  L  L ++ N+LSG  P SL   N+L+SL++  N  SG IPTW+G
Sbjct: 671  NHFVGNLPQSMGSLAELQSLQIRNNTLSGIFPTSLKKNNQLISLDLGENNLSGCIPTWVG 730

Query: 719  EKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYP 778
            EK   + IL LRSN F G  P E+C ++ LQ+LDL  NNLSG IP C  NLSAM   +  
Sbjct: 731  EKLLKVKILRLRSNSFAGHIPNEICQMSHLQVLDLAENNLSGNIPSCFCNLSAMTLKNQS 790

Query: 779  LGDTHPGITDCSLYRSCLPRPRSFSD--PIEKAFLVMKGKELEYSTILYLVALIDLSKNN 836
                    TD S+Y        S+S    +    L +KG+  EY  IL LV  IDLS N 
Sbjct: 791  --------TDPSIYSEAQYVGSSYSSIYSMVSVLLWLKGRGDEYRNILGLVTSIDLSSNK 842

Query: 837  FSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNL 896
              GEIP ++T+L  L  LNLS+N   G IP  IG M S++ IDFS NQLS EIP ++S L
Sbjct: 843  LLGEIPRKITNLNGLNFLNLSHNQLIGHIPQGIGNMGSLQSIDFSRNQLSGEIPPTISKL 902

Query: 897  TFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQDGNGEDD 956
            +FL++L++SYN+L G+IPT TQLQ+FDAS FIGN+LCG PL  NC+         NG+  
Sbjct: 903  SFLSMLDVSYNHLKGKIPTGTQLQTFDASSFIGNNLCGLPLPINCSS--------NGKTH 954

Query: 957  EDE------VEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRL 999
              E      V WF+VS  +G VVGFW VI PL++ R WRY Y  FLD +
Sbjct: 955  SYEGSHGHGVNWFFVSATIGFVVGFWIVIAPLLICRSWRYAYFHFLDHV 1003

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/1070 (44%), Positives = 636/1070 (59%), Gaps = 96/1070 (8%)

Query: 5    VSFVLLELLAVATISLSFC---GGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAG 61
            V  +L+  LA+ATI+ S     G       C ESER+ALL FK+DL DP+N+L SW  A 
Sbjct: 7    VVLLLIRFLAIATITFSIGLSNGNPGWPPLCKESERQALLMFKQDLNDPANQLASW-VAE 65

Query: 62   DGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSK 121
            +G+DCC W+ VVCD+ TGH+ EL L     HP                Y   ++    S 
Sbjct: 66   EGSDCCSWTRVVCDHMTGHIQELHLDGSYFHP----------------YSDPFDLDSDSC 109

Query: 122  FGGKINPSLLHFQHLNYLDLSGNSFGGG-IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGN 180
            F GKINPSLL  +HLNYLDLS N+F G  IP F GSM  L +LNL+ + F G+IPH+LGN
Sbjct: 110  FSGKINPSLLSLKHLNYLDLSNNNFQGTQIPSFFGSMTSLTHLNLAYSEFYGIIPHKLGN 169

Query: 181  LSKLQYLDLVENS--ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVL 238
            LS L+YL+L  ++   L V+NL W+ GLSLL+HLDL  VNL KA DW    N L SL  L
Sbjct: 170  LSSLRYLNLSSSNGFNLKVENLQWISGLSLLKHLDLSFVNLSKASDWLQVTNMLPSLVEL 229

Query: 239  RLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGS 298
             +S CQL    P P  N +S+ VLDLS N+F  NSL+  WVF + NLV L L    FQG 
Sbjct: 230  DMSNCQLHQITPLPTTNFTSLVVLDLSGNRF--NSLMPMWVFSIKNLVSLRLIYCWFQGP 287

Query: 299  IPVGLQNLTSLRHLDLSYN----------------------------------------- 317
            IP   QN+TSLR +DLS N                                         
Sbjct: 288  IPSISQNITSLREIDLSLNSISLDPIPKWLFNQKDLALSLESNQLTGQLPSSIQNMTGLK 347

Query: 318  -------DFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEG 370
                   DFNS+IP WL S +NL  + L SN+L+G I+  + N+++ +  L L +  LEG
Sbjct: 348  VLNLGSNDFNSTIPEWLYSLNNLESLLLSSNALRGEISSSIGNMTSLVN-LHLDNNLLEG 406

Query: 371  QIPRSFGRLCNLREISLSDVKMS-QDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQI 429
            +IP S G LC L+++ LS    + Q  S I +  S C  + ++S  +    I G +   +
Sbjct: 407  KIPNSLGHLCKLKDLDLSKNHFTVQRPSVIFESLSRCGPNGIKSLSLRYTNISGPIPMSL 466

Query: 430  GHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDV 489
            G+  SL+ L +S N  +G     +G L  L  + +SNN+L+  +SE+  +NL+KL  F  
Sbjct: 467  GNLSSLEKLDISGNQFNGTFTEVIGQLKMLTDLDISNNSLEDAVSEVSFSNLTKLKHFIA 526

Query: 490  SGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPAR 549
            +GN+ TLK   DW+PPFQLE L L S HLGP +P WL +Q  L  L +S +GI  TVP  
Sbjct: 527  NGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLSCTGISSTVPTW 586

Query: 550  FWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNN 609
            FW  + ++ +LN S++++ G+I N+  A  +  VDLSSN+ +G LP++   L  +DLSN+
Sbjct: 587  FWNLTSKVRYLNLSHNQLYGQIQNIV-AGPMSVVDLSSNHFTGALPIVPTSLFWLDLSNS 645

Query: 610  AFSGSISPVLCN--GMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP 667
            +FSGS+    C+      +L  L+L NN  SG++PDCWM++ YL  LNL NNN TGN+P 
Sbjct: 646  SFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNLTGNVPM 705

Query: 668  SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727
            S+G L  L  LHL+ N L G +P SL NC RL  +++  N FSG IP WIG+  S + IL
Sbjct: 706  SMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSLSELQIL 765

Query: 728  NLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787
            NLRSN F+G  P E+C+LTSLQILDL +N LSG IP+C  NLSAM               
Sbjct: 766  NLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADFSES--------R 817

Query: 788  DCSLYR--SCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEV 845
            D S+Y   + +  P S +    KA LV KG+E+EY  IL  V  +DLS N   GEIP E+
Sbjct: 818  DASVYVILNGISVPLSVT---AKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEIPEEL 874

Query: 846  TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLS 905
            TDL+AL+SLNLS NHF+GRIP  IG M  +E +DFS NQL  EIP+S++NLTFL+ LNLS
Sbjct: 875  TDLLALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLS 934

Query: 906  YNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTE--TVPMP---QDGNGEDDEDEV 960
             N L+G IP STQLQS D S F+GN+LCG+PL++NC+E   +P P    DG G  +  E 
Sbjct: 935  NNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYNLLED 994

Query: 961  EWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDKCSTAIRKF 1010
            EWFYVS+ +G   GFW V+G L+VN  W  + S  L+R+  K    I ++
Sbjct: 995  EWFYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRIVLKMYHVIVEY 1044

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566257|ref|XP_003551350.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max]

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1066 (45%), Positives = 627/1066 (58%), Gaps = 121/1066 (11%)

Query: 32   CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLN 91
            C+ SEREALL+FK  LKDPSNRL SWN +    +CC W+GVVC N T HVLEL L N   
Sbjct: 36   CVPSEREALLRFKHHLKDPSNRLWSWNASN--TNCCDWTGVVCSNVTAHVLELHL-NTSP 92

Query: 92   HPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFG-GGI 150
             P+ Y  +          Y    +AY  SKFGG+I PSLL  +HL++LDLSGNSFG   I
Sbjct: 93   PPLPYSNNSD------IEYEEALDAYHSSKFGGEIKPSLLELKHLSHLDLSGNSFGFVQI 146

Query: 151  PRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSE---------------- 194
            P FL  M  L YLNLS  GF G IPHQ+GNLS L YLDL   +                 
Sbjct: 147  PSFLWEMTSLTYLNLSCGGFNGKIPHQIGNLSNLVYLDLSYAASGEVPYQIGNLTKLLCL 206

Query: 195  -------LYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
                   L+ +NL WL GLS LQ+L+LG VNL K+FDW   + +L SL  LRLS C +  
Sbjct: 207  GLQGLDFLFAENLHWLSGLSQLQYLELGRVNLSKSFDWLQTLQALPSLMELRLSQCMIHR 266

Query: 248  FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
            ++ P  +N SS++ L LS     + S V  W+FGL  LV L L  N FQG I  G+Q+LT
Sbjct: 267  YNHPSSINFSSLATLQLSFISSPETSFVPKWIFGLRKLVSLQLNGN-FQGFILDGIQSLT 325

Query: 308  SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEV------- 360
             L +LDLS N F+SSIP+ L     L  ++LRS++L G+I+G L+NL++ +E+       
Sbjct: 326  LLENLDLSQNSFSSSIPDSLYGLHRLKFLNLRSSNLCGTISGVLSNLTSLVELDLSYNQL 385

Query: 361  ----------------------------------------LDLSSQQLEGQIPRSFGRLC 380
                                                    L+ S  QLEG IP + G LC
Sbjct: 386  EGMIPTYLGNLTSLVRLDLSRNQLQGRIPTTLGNLTSLVKLNFSQNQLEGPIPTTLGNLC 445

Query: 381  NLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFL 440
            NLREI  S +K++Q ++EIL+I + C+S  +    ++  ++ G+LT QIG FK++  +  
Sbjct: 446  NLREIDFSYLKLNQQVNEILEILTPCVSHVVTRLIISSSQLSGYLTDQIGLFKNIVRMDF 505

Query: 441  SHNSISGLIPSSLGGLSSLERVVLSNNTLKG-------------YLS-----------EI 476
            S+NSI G +P SLG LSSL  + LS N   G             YLS           E 
Sbjct: 506  SNNSIHGALPRSLGKLSSLRILDLSQNQFYGNPFQVLRSLHELSYLSIDDNLFQGIVKED 565

Query: 477  HLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLD 536
             LANL+ L +F  SGN LTL VGP+W+P FQL +L + S  LGP FP W+ SQ  L  L+
Sbjct: 566  DLANLTSLKAFLASGNNLTLAVGPNWLPSFQLFELGMNSWQLGPNFPSWIHSQEALLSLE 625

Query: 537  ISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLP 595
            IS +GI D++PA FWE    + +LN SN+ I+GE+PN L   +G   VDLSSN L G LP
Sbjct: 626  ISNTGISDSIPAWFWETCHDVSYLNLSNNNIHGELPNTLMIKSG---VDLSSNQLHGKLP 682

Query: 596  LISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLN 655
             ++  +  +DLSNN+FSGS++  LC      LQ LNL +N+ SGEIPDCWM + YL  +N
Sbjct: 683  HLNDYIHWLDLSNNSFSGSLNDFLCKKQESFLQFLNLASNNLSGEIPDCWMTWPYLVDVN 742

Query: 656  LGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPT 715
            L +NNF GNLPPS+GSL  L  LHL+ NSLSG  P  L   N L+ L++  N  +G IP 
Sbjct: 743  LQSNNFDGNLPPSMGSLTQLQTLHLRSNSLSGIFPTFLKKTNMLICLDLGENSLTGTIPG 802

Query: 716  WIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTV 775
            WIGEK  ++ IL L SN F G  P E+C +  L+ LDL  NNL G IP C++NL+AM+ +
Sbjct: 803  WIGEKLLNLKILRLPSNRFTGHIPKEICDMIFLRDLDLAKNNLFGNIPNCLNNLNAML-I 861

Query: 776  DYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKN 835
                 D+   +   SL   C          I  + + +KG+ +EY  IL LV  +DLS N
Sbjct: 862  RSRSADSFIYVKASSL--RC-------GTNIVSSLIWVKGRGVEYRNILGLVTNVDLSGN 912

Query: 836  NFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSN 895
            N SGEIP E+TDL  L  LNLS N  SG+IP SIG M+S+E IDFS N+LS +IP ++SN
Sbjct: 913  NLSGEIPRELTDLDGLIFLNLSINQLSGQIPLSIGNMRSLESIDFSFNKLSGDIPSTISN 972

Query: 896  LTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMPQDGNGED 955
            L+FL+ L+LSYN+L GEIPT TQ+Q+F+AS F+GN LCG PL  NC+    + +D + E 
Sbjct: 973  LSFLSKLDLSYNHLEGEIPTGTQIQTFEASNFVGNSLCGPPLPINCSSHWQISKDDHDEK 1032

Query: 956  DED--EVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRL 999
            + D   V W +VSMA G   GF  V+ PL + + WRY Y  FLD +
Sbjct: 1033 ESDGHGVNWLFVSMAFGFFAGFLVVVAPLFIFKSWRYAYYRFLDDM 1078

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561661|ref|XP_003549098.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1012 (46%), Positives = 610/1012 (60%), Gaps = 69/1012 (6%)

Query: 32   CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLN 91
            CI SERE LLKFK +L DPSNRL SWN   +  +CC W GV+C N T H+L+L L     
Sbjct: 25   CIPSERETLLKFKNNLIDPSNRLWSWNH--NHTNCCHWYGVLCHNVTSHLLQLHL----- 77

Query: 92   HPISYHTSPAQYSIIYRTYGAEY-----EAYERSKFGGKINPSLLHFQHLNYLDLSGNSF 146
                 HTS + +   Y  Y   Y     EAY R  FGG+I+P L   +HLNYLDLSGN F
Sbjct: 78   -----HTSDSAFE--YEYYHGFYRRFDLEAYRRWIFGGEISPCLADLKHLNYLDLSGNEF 130

Query: 147  ---GGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSE-LYVDNLSW 202
               G  IP FLG+M  L +LNLS  GF G IP Q+GNLS L YL L    E L  +N+ W
Sbjct: 131  LGKGMAIPSFLGTMTSLTHLNLSYTGFWGKIPPQIGNLSNLVYLALSSVVEPLLAENVEW 190

Query: 203  LPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVL 262
            +  +  L++L L  V+L KAF W   + SL SL  L LSGC L H++ P ++N SS+  L
Sbjct: 191  VSSMWKLEYLHLSTVDLSKAFHWLHTLQSLPSLTHLYLSGCTLPHYNEPSLLNFSSLQTL 250

Query: 263  DLSSNQFDQN-SLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS 321
             L +  +    S V  W+F L  LV L L  N+ QG IP G++NLT L++L LS N F+S
Sbjct: 251  ILYNTSYSPAISFVPKWIFKLKKLVSLQLWGNEIQGPIPGGIRNLTLLQNLYLSGNSFSS 310

Query: 322  SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCN 381
            SIP+ L     L  ++L  N L G+I+  L NL++ +E LDLS  QLEG IP S G LCN
Sbjct: 311  SIPDCLYDLHRLKFLNLGDNHLHGTISDALGNLTSLVE-LDLSGNQLEGNIPTSLGNLCN 369

Query: 382  LREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLS 441
            LR+I  S++K++Q ++E+L+I + CIS  L    +   ++ G++T  IG FK++  L  S
Sbjct: 370  LRDIDFSNLKLNQQVNELLEILAPCISHGLTRLAVQSSRLSGNMTDHIGAFKNIVRLDFS 429

Query: 442  HNSISGLIPSSLGGLSSLERVVLS------------------------NNTLKGYLSEIH 477
            +NSI G +P S G LSS+  + LS                         N   G + E  
Sbjct: 430  NNSIGGALPRSFGKLSSIRYLNLSINKFSGNPFESLGSLSKLSSLYIDGNLFHGVVKEDD 489

Query: 478  LANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDI 537
            LANL+ L  F  SGN  TLKVGP+W P F+L  LD+ S  L P FP W+ SQN L Y+ +
Sbjct: 490  LANLTSLTEFGASGNNFTLKVGPNWRPNFRLSYLDVTSWQLSPNFPSWIQSQNKLQYVGL 549

Query: 538  SRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSK-ATGLRTVDLSSNNLSGTLPL 596
            S +GI D++P  FWE   Q+ +LN S++ I+GEI    K    ++T+DLSSN+L G LP 
Sbjct: 550  SNTGILDSIPTWFWETLSQILYLNLSHNHIHGEIETTFKNPKSIQTIDLSSNHLCGKLPY 609

Query: 597  ISFQLESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLENNSFSGEIPDCWMNFLYLRVL 654
            +S  +  +DLS+N+FS S++  LCN      +L+ LNL +N+ SGEIPDCWMN+  L  +
Sbjct: 610  LSSGVFQLDLSSNSFSESMNDFLCNDQDEPVQLKFLNLASNNLSGEIPDCWMNWTSLVYV 669

Query: 655  NLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIP 714
            NL +N+F GNLP S+GSL  L  L ++ N+LSG  P SL   N+L+SL++  N  SG IP
Sbjct: 670  NLQSNHFVGNLPQSMGSLADLQSLQIRNNTLSGIFPTSLKKNNQLISLDLGENNLSGTIP 729

Query: 715  TWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVT 774
            TW+GEK  ++ IL LRSN F G  P E+C L+ LQ+LDL  NNLSG IP C SNLSAM  
Sbjct: 730  TWVGEKLLNVKILLLRSNSFTGHIPNEICQLSLLQVLDLAQNNLSGNIPSCFSNLSAMTL 789

Query: 775  VDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSK 834
             +     T P I   + +        S    I    L +KG+  EY   L LV +IDLS 
Sbjct: 790  KN---QSTDPRIYSQAQFGLLYTSWYS----IVSVLLWLKGRGDEYRNFLGLVTIIDLSS 842

Query: 835  NNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVS 894
            N   GEIP E+T L  L  LNLS+N   G IP  IG M+S++ IDFS NQLS EIP +++
Sbjct: 843  NKLLGEIPREITYLNGLNFLNLSHNQLIGHIPQGIGNMRSLQSIDFSRNQLSGEIPPTIA 902

Query: 895  NLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTETVPMP----QD 950
            NL+FL++L+LSYN+L G IPT TQLQ+FDAS FIGN+LCG PL  NC+           D
Sbjct: 903  NLSFLSMLDLSYNHLKGTIPTGTQLQTFDASSFIGNNLCGPPLPINCSSNGKTHSYEGSD 962

Query: 951  GNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDRLGDK 1002
            G+G      V WF+VSM +G +VGFW VI PL++ R WRY Y  FLD +  K
Sbjct: 963  GHG------VNWFFVSMTIGFIVGFWIVIAPLLICRSWRYAYFHFLDHVWFK 1008

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1094 (44%), Positives = 652/1094 (59%), Gaps = 128/1094 (11%)

Query: 5    VSFV-LLELLAVATISLSFCGGA--TCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAG 61
            V+FV LL L+A  T S     G+    +G C + EREAL+KFK +L+DPS RL SW   G
Sbjct: 6    VTFVSLLFLIAATTFSFVHSHGSYNAAVG-CNQIEREALMKFKDELQDPSKRLASW---G 61

Query: 62   DGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAY-ERS 120
              A+CC W GV+CDNFTGHV EL L    +      +    Y          YE Y ERS
Sbjct: 62   ADAECCTWHGVICDNFTGHVTELHLKILSSEEYYSSSDALGYYF--------YEEYLERS 113

Query: 121  KFGGKINPSLLHFQHLNYLDLSGNSFGG-GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLG 179
             F GK++ SLL+ +HLNYLDLS N FGG  IP FLGSM  L++LNL GAGF G IPHQLG
Sbjct: 114  SFRGKVSQSLLNLKHLNYLDLSNNDFGGIQIPPFLGSMESLRHLNLYGAGFGGRIPHQLG 173

Query: 180  NLSKLQYLDLVENS-----ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSS 234
            NLS LQYL+L   S      +Y+++L WL  L  L+ LD  GV+L KAF+W   +N+L S
Sbjct: 174  NLSNLQYLNLNAKSIYTSAVIYIESLQWLSSLRSLEFLDFSGVDLSKAFNWLDVLNTLPS 233

Query: 235  LRVLRLSGCQLDHFHPPPI---VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLG 291
            L  L LSG +L   +P P+   VN SS+  L+LS+N F    +V SW+F L+ L  LDL 
Sbjct: 234  LGELHLSGSEL---YPIPLLSNVNFSSLLTLNLSANNF----VVPSWIFRLTTLATLDLS 286

Query: 292  SNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSI-------------------------PNW 326
            SN+F GSIP+ LQN+T+LR L LS +  NSSI                         P+ 
Sbjct: 287  SNNFVGSIPIHLQNITTLRELYLSDSGLNSSIFNCLHGLAHLELLHLASNYNLDGKIPST 346

Query: 327  LASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGR-------- 378
            + + ++L  + L  NSL+  I   + NL+ S++ LDLS   LEG IP + G         
Sbjct: 347  IGNLTSLRSLDLSFNSLEEGIPSAIGNLT-SLKSLDLSRNSLEGDIPSAIGNLASLSSLD 405

Query: 379  ----------------LCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIF 422
                            LCNLR + LS  K+SQ+I+E+ +I S C+SD LES  +   ++ 
Sbjct: 406  LSRNSLEGGIPTWFRNLCNLRSLELSINKLSQEINEVFEILSGCVSDILESLILPSSQLS 465

Query: 423  GHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL------------------------SS 458
            GHL+ ++  FK+L  L L+ N ISG IP +LG L                        S 
Sbjct: 466  GHLSDRLVKFKNLAYLDLNDNLISGPIPENLGELNFLISLDLGNNKLNGSLPIDFGMLSK 525

Query: 459  LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQ-LEKLDLQSCH 517
            L  V +SNN+L+G +SEIH ANL+ L +F  S N L L+V PDW P FQ +  + L+   
Sbjct: 526  LNYVDISNNSLEGEISEIHFANLTNLATFKASSNQLRLRVSPDWFPAFQRVSTISLKCWK 585

Query: 518  LGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLS-K 576
            +GP FP W+ S   L YLD+S S I  T+P  F   S +LY +N S+++++G IP LS  
Sbjct: 586  VGPQFPTWIHSLKYLAYLDLSNSTISSTLPTWFHNFSSRLYQINLSHNQMHGTIPYLSID 645

Query: 577  ATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636
             +    +DLSSNN  G++P IS     +DLSNN+FSGSIS  LC   R  + VLNL  N 
Sbjct: 646  DSDYSLIDLSSNNFGGSMPFISSNPFGLDLSNNSFSGSISSFLCYKPR-TINVLNLGENL 704

Query: 637  FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNC 696
            FSGEIPDCWMN+ Y  V+ L NN F+GN+P S+G+L  L++L+++ N+LSG +P SL +C
Sbjct: 705  FSGEIPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIRNNNLSGEMPISLKHC 764

Query: 697  NRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756
              L  L++ GN+ SG+I TW+G+ F   +ILNLR N F G  P ELC +T+L ILD   N
Sbjct: 765  TSLQVLDLSGNELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEELCGMTALVILDFANN 824

Query: 757  NLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK 816
            NL+G IP+CI+N +A+++    L D    +     Y   L          E + +   GK
Sbjct: 825  NLNGTIPRCINNFTALLSGTSYLKDGKVLVD----YGPTLTYS-------ESSLIERNGK 873

Query: 817  ELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIE 876
             +EYST L  V  +D S N  SGEIP E+T L  L  LNLS+N  +GRIP++IGAMK+++
Sbjct: 874  LVEYSTTLGFVRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPENIGAMKALQ 933

Query: 877  VIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSP 936
            ++DFS NQLS EIP+S+S+LTFLN LNLS N LSG IP+STQLQSFD+S F GN+LCG P
Sbjct: 934  ILDFSRNQLSGEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSFSGNNLCGPP 993

Query: 937  LSRNCT--------ETVPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRW 988
            L+++C+        E       GNG  +  +  +FYVS+A G V+GFW V+GPL  N+RW
Sbjct: 994  LTQSCSGDGEKPDIEKRTTEDGGNGSPEAIDWFYFYVSIAPGFVIGFWVVVGPLAFNKRW 1053

Query: 989  RYMYSVFLDRLGDK 1002
            R +Y  FL+ L +K
Sbjct: 1054 RRLYFNFLEDLWNK 1067

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1011
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.825	0.922	0.326	7.7e-103
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.694	0.865	0.292	8.9e-70
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.791	0.813	0.278	1.7e-60
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.833	0.827	0.271	1e-58
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.665	0.778	0.295	2.5e-57
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.721	0.818	0.282	1.3e-56
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.790	0.803	0.279	3.1e-56
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.839	0.849	0.267	5.8e-55
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.720	0.582	0.283	4.9e-53
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.610	0.549	0.263	6.7e-53

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 299/916 (32%), Positives = 453/916 (49%)

Query:     7 FVLLELLAVATISLSFCGGATCLGHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADC 66
             F+   +L +   +L++  G+     CI +ER+ALL F+  L D S+RL SW+G     DC
Sbjct:    10 FISFLILILLLKNLNY--GSAASPKCISTERQALLTFRAALTDLSSRLFSWSGP----DC 63

Query:    67 CKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKI 126
             C W GV+CD  T HV+++ L NP                   +     + Y+R    GKI
Sbjct:    64 CNWPGVLCDARTSHVVKIDLRNP-------------------SQDVRSDEYKRGSLRGKI 104

Query:   127 NPSLLHFQHLNYLDLSGNSFGG-GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
             +PSL   + L+YLDLS N F    IP F+G +  L+YLNLS + F G IP  LGNLSKL+
Sbjct:   105 HPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLE 164

Query:   186 YLDLVENS-------ELYVDNLSWLPGLSL-LQHLDLGGVNLGKAFD-WSLAINXXXXXX 236
              LDL   S        L   NL WL  LS  L++L++G VNL  A + W    +      
Sbjct:   165 SLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNLSGAGETWLQDFSRISALK 224

Query:   237 XXXXXGCQLDHFHPPPI---VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSN 293
                    +L +  PP +    ++  + VLDLS N    NS + +W+FGL+NL  L L  +
Sbjct:   225 ELHLFNSELKNL-PPTLSSSADLKLLEVLDLSENSL--NSPIPNWLFGLTNLRKLFLRWD 281

Query:   294 DFQGSIPVGLQNLTSLRHLDLSYN-DFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL- 351
               QGSIP G +NL  L  LDLS N      IP+ L     L  + L +N L G I GFL 
Sbjct:   282 FLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLD 341

Query:   352 ---ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCIS 408
                 N   S+  LDLSS +L G +P S G L NL+ + LS    +  +   +   +S   
Sbjct:   342 AFSRNKGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMAS--- 398

Query:   409 DRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXXXXXXERVVLSNNT 468
               L+  D++   + G +   +G    L  L L  N                 + +    T
Sbjct:   399 --LKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSI--RLT 454

Query:   469 LKGYLSEIHLANLSKLVSFDVSGNAL-TLKVG--PDWIP-PFQLEKLDLQSCHLGPTFP- 523
              + Y S +     + +  F +    +   ++G  P W+    +L  + L++  +  T P 
Sbjct:   455 TEPYRSLVFKLPSTWIPPFRLELIQIENCRIGLFPMWLQVQTKLNFVTLRNTGIEDTIPD 514

Query:   524 FWL--LSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLS-KATGL 580
              W   +S  V  YL ++ + I+  +P +   A P+L  ++ S++   G  P  S  AT L
Sbjct:   515 SWFSGISSKVT-YLILANNRIKGRLPQKL--AFPKLNTIDLSSNNFEGTFPLWSTNATEL 571

Query:   581 RTVDLSSNNLSGTLP----LISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636
             R   L  NN SG+LP    ++  ++E I L +N+F+G+I   LC  + G LQ+L+L  N 
Sbjct:   572 R---LYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCE-VSG-LQILSLRKNH 626

Query:   637 FSGEIPDCWMNFLYLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNC 696
             FSG  P CW     L                              +NSL G+IPESL NC
Sbjct:   627 FSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNC 686

Query:   697 NRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756
             + L ++++ GN+ +G +P+W+G K SS+ +L L+SN F GQ P +LC + +L+ILDL  N
Sbjct:   687 SGLTNIDLGGNKLTGKLPSWVG-KLSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGN 745

Query:   757 NLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK 816
              +SG IPKCISNL+A+       G  +    +     +      + ++ I  +   + G+
Sbjct:   746 KISGPIPKCISNLTAIAR-----GTNNEVFQNLVFIVTRAREYEAIANSINLSGNNISGE 800

Query:   817 -ELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSI 875
                E   +LYL  +++LS+N+ +G IP ++++L  L +L+LS N FSG IP S  A+ S+
Sbjct:   801 IPREILGLLYL-RILNLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFAAISSL 859

Query:   876 EVIDFSNNQLSEEIPR 891
             + ++ S N+L   IP+
Sbjct:   860 QRLNLSFNKLEGSIPK 875

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 215/734 (29%), Positives = 333/734 (45%)

Query:   272 NSLVLSWVFGLSNLVYLDLGSNDFQGSIP-VGLQNLTSLRHLDLSYNDFNSSIPNWLASF 330
             +S +L  +  +++LV LD+  N+ QG IP     NLTSL  LD+  N FN SIP+ L S 
Sbjct:    94 SSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSL 153

Query:   331 SNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDV 390
             +NL  + L  N + G+++G +  L  +++ L L    + G IP   G L  L  ++L   
Sbjct:   154 TNLQRLDLSRNVIGGTLSGDIKELK-NLQELILDENLIGGAIPSEIGSLVELLTLTLRQN 212

Query:   391 KMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXX 450
               +  I   +   +     +L++ D+    +   +   IG+  +L +L LS N       
Sbjct:   213 MFNSSIPSSVSRLT-----KLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIP 267

Query:   451 XXXXXXXXXERVVLSNNT-LKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWI-PPFQL 508
                      E + L NN  L G +    L  L KL    + GN         ++ P F+L
Sbjct:   268 SSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKL 327

Query:   509 EKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRIN 568
               L L+SC L    P WL +Q  L YLD+S + ++   P   W A  ++  +  S++R+ 
Sbjct:   328 THLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPK--WLADLKIRNITLSDNRLT 385

Query:   569 GEIP-NLSKATGLRTVDLSSNNLSGTLP--LISFQLESIDLSNNAFSGSISPVLCNGMRG 625
             G +P NL +   L  + LS NN SG +P  +   Q+  + LS N FSGS+   +      
Sbjct:   386 GSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPKSITK--IP 443

Query:   626 ELQVLNLENNSFSGEIPDCWMNFLYLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSL 685
              L++L+L  N  SGE P  +    YL                              +N+ 
Sbjct:   444 FLKLLDLSKNRLSGEFPR-FRPESYLE--WLDISSNEFSGDVPAYFGGSTSMLLMSQNNF 500

Query:   686 SGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFL 745
             SG  P++  N + L+ L++  N+ SG + + I +  SS+ +L+LR+N   G  P  +  L
Sbjct:   501 SGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNL 560

Query:   746 TSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDT-HPGITDCSLYRSCLPRPRSFSD 804
             TSL++LDL  NNL G +P  + NL+ M+    P   T  P     S Y       R    
Sbjct:   561 TSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYF---SSYTDIPNIERLIEI 617

Query:   805 PIEKAF-LVMK---GKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNH 860
               E  F LV+     K++ +    YL  L+DLSKN   GEIP  + +L +L+ LNLS N 
Sbjct:   618 ESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNE 677

Query:   861 FSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQ 920
             FSG IP S G ++ +E +D S+N L+ EIP+                   G IP S QL 
Sbjct:   678 FSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLD 737

Query:   921 SFDASCFIGND--LCGSPLSRNC--TETV-PMPQXXXXXXXXXXXXWFYVSMALGCVVGF 975
               +      N+  +CG  +   C  T+T  P  +            + + + A+GC  GF
Sbjct:   738 RLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEETIFSWNAAAIGCSCGF 797

Query:   976 WFVIGPLIVNRRWR 989
                +  +  N  W+
Sbjct:   798 LIAVVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 1.7e-60, P = 1.7e-60
 Identities = 234/841 (27%), Positives = 362/841 (43%)

Query:   127 NPSLLHFQHLNYL---DLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK 183
             N SL     L +L   DLS N F G IP  L ++  L  L+LS   F G IP  +GNLS 
Sbjct:   102 NSSLFRLPQLRFLTTLDLSNNDFIGQIPSSLETLSNLTTLDLSRNHFSGRIPSSIGNLSH 161

Query:   184 LQYLDLVENSELYVDNL-SWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXG 242
             L ++D   N+  +   + S L  LS L   +L   N       S+  N            
Sbjct:   162 LIFVDFSHNN--FSGQIPSSLGYLSHLTSFNLSYNNFSGRVPSSIG-NLSYLTTLRLSRN 218

Query:   243 CQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG 302
                    P  + ++  ++ L L +N F     + S +  LS+L  +DL  N+F G IP  
Sbjct:   219 SFFGEL-PSSLGSLFHLTDLILDTNHFVGK--IPSSLGNLSHLTSIDLHKNNFVGEIPFS 275

Query:   303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLD 362
             L NL+ L    LS N+    IP+   + + L  ++++SN L GS    L NL   +  L 
Sbjct:   276 LGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLR-KLSTLS 334

Query:   363 LSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIF 422
             L + +L G +P +   L NL+    ++   +  +   L    S  +  LE+  + G   F
Sbjct:   335 LFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNGSLGF 394

Query:   423 GHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXXXXXXERVVLSNNTLKGYLSEIHLANLS 482
             G+++S    + +L  L L +N                + + LSN   +G +     ++L 
Sbjct:   395 GNISS----YSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLK 450

Query:   483 KLVSFDVSGNALTLKVGP-DWIPPFQL-EKLDLQSCHLGPTFPFWLLSQNVLGYLDISRS 540
              +   ++S    T  +   + +  F+L + LDL   H+  T    L + +++    +  S
Sbjct:   451 SIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLS 510

Query:   541 GIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSG-----TL 594
             G   T   +F  +   +  L+ SN++I G++P  L     L  V+LS+N   G      L
Sbjct:   511 GCGITEFPKFLRSQELMLTLDISNNKIKGQVPGWLWMLPVLNYVNLSNNTFIGFERSTKL 570

Query:   595 PLISFQ----LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY 650
              L S Q    +  +  SNN F+G+I   +C      L  L+  NN F+G IP C  N   
Sbjct:   571 GLTSIQEPPAMRQLFCSNNNFTGNIPSFICE--LPYLSTLDFSNNKFNGSIPTCMGNIQS 628

Query:   651 LRVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
               +                             N L G++P SLS+ + L  LN++ N+ S
Sbjct:   629 PYLQALNLRHNRLSGLLPENIFESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKIS 688

Query:   711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIP-KCISNL 769
                P W+      + +L LRSN F G  P E    + L+I+D+  N  +G +P     N 
Sbjct:   689 DTFPLWLSS-LQELQVLVLRSNAFYG--PIEKTQFSKLRIIDISGNQFNGTLPANFFVNW 745

Query:   770 SAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829
             +AM ++D    D   G T  ++Y S       + D +    L+ KG E+E   +L +  +
Sbjct:   746 TAMFSLDEN-EDQSNGETMSNMYMST---DYFYFDSM---VLMNKGVEMELERVLKVFTV 798

Query:   830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
             ID S N F GEIP  +  L  L  LNLS N  SG I  S+G + ++E +D S N+LS EI
Sbjct:   799 IDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEI 858

Query:   890 PRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGND-LCGSPLSRNCTETVPMP 948
             P+                   G +P  TQ Q+   S F  N  L G  L + C      P
Sbjct:   859 PQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTP 918

Query:   949 Q 949
             Q
Sbjct:   919 Q 919

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 1.0e-58, P = 1.0e-58
 Identities = 245/904 (27%), Positives = 388/904 (42%)

Query:   125 KINPSLLHFQHLNYLDLSGNSFGGG-IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK 183
             K N SL   +HL  L+L+ N+F    IP     +  L+ L+LS +   G IP  L  L+K
Sbjct:   133 KSNSSLFKLRHLRDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQIPINLLQLTK 192

Query:   184 LQYLDLVENSELYVD--------NLSWLP----GLSLLQHLDLGGVNLGKAFDWSLAINX 231
             L  LDL  +S+ + D        + S+LP     L  L+ LD+  V +        +   
Sbjct:   193 LVSLDL-SSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFS--N 249

Query:   232 XXXXXXXXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN-LVYLDL 290
                       GC L    P  I+ I ++  +DL +N   + +L    VF  +N L+ L +
Sbjct:   250 IRSLRSLNLNGCNLFGEFPSSILLIPNLQSIDLGNNPNLRGNLP---VFHENNSLLKLTI 306

Query:   291 GSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
                 F G+IP  + +L +L  L LS + F+  IP  L + S+L H+SL SN+L G I   
Sbjct:   307 LYTSFSGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSS 366

Query:   351 LANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDR 410
             + NL+  +    +   +L G +P +   L  L  ISLS  + +  +   +   S     +
Sbjct:   367 IGNLN-QLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQLS-----K 420

Query:   411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXXXX-XXERVVLSN-NT 468
             L+ +        G + S +    SL  + LS+N                 E   + + N 
Sbjct:   421 LKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNY 480

Query:   469 LKGYLSEIHL-ANLSKLVSFDVSGNAL-TLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWL 526
              K    ++++ ++L +L +  +S   + T  +  D+  P  LE L L+SC++   FP ++
Sbjct:   481 TKVRPLDLNVFSSLKQLGTLYISRIPISTTNITSDF--PSNLEYLSLRSCNI-TDFPEFI 537

Query:   527 LSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNL--SKATGLRTVD 584
                  L  LD+S + I+  VP   W   P L  ++ SN+ ++G   ++  S  + L +VD
Sbjct:   538 RKGRNLQILDLSNNKIKGQVPDWLWRM-PTLNSVDLSNNSLSGFHVSVKASPESQLTSVD 596

Query:   585 LSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDC 644
             LSSN   G L L S  L     SNN F+G I   +C G+   L++L+L NN+ +G +P C
Sbjct:   597 LSSNAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSIC-GL-SSLEILDLSNNNLNGSLPWC 654

Query:   645 WMNFLY-LRVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLN 703
                 +  L                               N + G++P SL+ C+ L  LN
Sbjct:   655 LETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLN 714

Query:   704 MDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTE--LCF-LTSLQILDLGYNNLSG 760
             +  N+ +   P  +      + +L L SN F G       + F    LQI+D+ +N+  G
Sbjct:   715 VGSNRINDMFPFELNS-LQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFG 773

Query:   761 AIPK-CISNLSAMVTV-DYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKEL 818
              +P     N +AM +  D  +   +  I + S+Y S L    S         L+ KG  +
Sbjct:   774 ILPSDYFMNWTAMSSKKDNNIEPEY--IQNPSVYGSSLGYYTSL-------VLMSKGVSM 824

Query:   819 EYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVI 878
             E   +L +   IDLS N   G+IP  +  L  LR LN+S N F+G IP S+  +K++E +
Sbjct:   825 EMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESL 884

Query:   879 DFSNNQLSEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGND-LCGSPL 937
             D S N +S EIP                    G IP  TQ Q    S + GN  L G  L
Sbjct:   885 DISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSL 944

Query:   938 SRNC------TETVPMPQXXXXXXXXXXXXWFYVSMALGCVVGFWFVIGPLIVNRRWRYM 991
                C      T T   P             W    +     V F   +G ++V+ + ++ 
Sbjct:   945 ENVCGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIVVSYKHQWF 1004

Query:   992 YSVF 995
                F
Sbjct:  1005 MKTF 1008

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.5e-57, P = 2.5e-57
 Identities = 212/718 (29%), Positives = 325/718 (45%)

Query:   250 PPPIVNISSISVLDLSSNQF---DQNSLVLSW--VFGLSNLVYLDLGSNDFQGSI-PVG- 302
             P    N++ + +L L SN F     N L+ S+  V  L  L  LDL  N F G++ P   
Sbjct:   119 PSEFCNLNKLKLLSLFSNGFIDLSHNDLMGSFPLVRNLGKLAVLDLSDNHFSGTLNPNNS 178

Query:   303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLD 362
             L  L SLR+L+L++N+ +SS+P+   + + L  +SL  N   G     ++NL+  I  L 
Sbjct:   179 LFELHSLRYLNLAFNNISSSLPSKFGNLNKLEVLSLSFNGFSGQCFPTISNLTR-ITQLY 237

Query:   363 LSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGC-KI 421
             L + +L G  P     L  L  + LSD   S  I   L  F S  +  L   D++G  ++
Sbjct:   238 LHNNELTGSFPL-VQNLTKLSFLGLSDNLFSGTIPSYLFTFPSLSTLDLRENDLSGSIEV 296

Query:   422 FGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXXXXXXERVVLSN-NTLKGYLSEIHLAN 480
                 TS       L+ ++L  N                +R+ LS  NT   Y  +++L +
Sbjct:   297 PNSSTSS-----KLEIMYLGFNHLEGKILEPISKLINLKRLDLSFLNT--SYPIDLNLLS 349

Query:   481 LSKLVSF-DVSGNALT-LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLS-QNVLGYLDI 537
               K +S+ D SGN+L+   +      P  +E + L  C +   FP  L   QN++ ++DI
Sbjct:   350 PLKSLSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCGIRE-FPNILKHLQNLI-HIDI 407

Query:   538 SRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGL--RTVDLSSNNLSGTLP 595
             + + I+  +P   W   PQL F++ SN+  NG   +      L  R + L +NN  G LP
Sbjct:   408 TSNQIKGKIPEWLWTL-PQLSFVDISNNSFNGFQGSAEVFVNLSVRILMLDANNFEGALP 466

Query:   596 LISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVXX 655
              +   +      +N+F+G I   +CN  R  L +++L  N+F+G IP C  NF+++ +  
Sbjct:   467 TLPLSIIGFSAIHNSFTGEIPLSICN--RTSLTMVDLSYNNFTGPIPQCLSNFMFVNLRK 524

Query:   656 XXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPT 715
                                        N L+G++P SL NC+ L  L++D N+     P 
Sbjct:   525 NDLEGSIPDTFYTDSSLKSLDVGY---NRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPF 581

Query:   716 WIGEKFSSMVILNLRSNIFDGQF--PTE--LCFLTSLQILDLGYNNLSGAIPKCIS-NLS 770
             W+ +   ++ +L LRSN F G    P +  L F   L+I ++  N  +G++P     N  
Sbjct:   582 WL-KALPNLRVLTLRSNKFYGPISPPHQGPLGF-PELRIFEIADNMFTGSLPPSFFVNWK 639

Query:   771 AMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALI 830
             A        G  +          S  P   +++D I+   L  KG  +E   +L   A I
Sbjct:   640 ASALTKNEDGGLYMVYEYDKAANS--PVRYTYTDTID---LQYKGLHMEQERVLTSYAAI 694

Query:   831 DLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP 890
             D S N   G+IP  +  L AL +LNLS N F+G IP S   + ++E +D S NQLS  IP
Sbjct:   695 DFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGTIP 754

Query:   891 RXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGN-DLCGSPLSRNCTET-VP 946
                                 GEIP  TQ+     S F GN  LCG PL   C ++ VP
Sbjct:   755 NGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQETCFDSSVP 812

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 1.3e-56, P = 1.3e-56
 Identities = 221/783 (28%), Positives = 341/783 (43%)

Query:   253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPV-GLQNLTSLRH 311
             ++N++S+ VLDL  N+F    L    +  L NL  LDL +N F GS+   G+  L  L+ 
Sbjct:   124 LINLTSLEVLDLKFNKFS-GQLPTQELTNLRNLRALDLSNNKFSGSLQKQGICRLEQLQE 182

Query:   312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQ 371
             L LS N F   IP   + FS L  + L SN L G I  F+++   S+E L L     EG 
Sbjct:   183 LRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFK-SMEYLSLLDNDFEGL 241

Query:   372 IPRSFGRLCNLREISLSDVKMSQDISEILDI-FSSCISDRLESWDMTGCKIFGHLTSQIG 430
                S G +  L E+ +  +     + +I++   S  +  +L S  ++ C + G +   + 
Sbjct:   242 F--SLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNL-GKIPGFLW 298

Query:   431 HFKSLDSLFLSHNXXXXXXXX-XXXXXXXXERVVLSNNTLKGYLSEIHLANLSKL-VSFD 488
             + + L  + LS+N                 + ++L NN+ K       +  L  L +S +
Sbjct:   299 YQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFKTLTLPRTMRRLQILDLSVN 358

Query:   489 VSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPA 548
                N L   VG   +    L  L+L +       P  +     + ++D+S +     +P 
Sbjct:   359 NFNNQLPKDVG---LILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPR 415

Query:   549 RFWEASPQLYFLNFSNSRINGEIPNLSK-ATGLRTVDLSSNNLSGTLP--LISFQLES-I 604
               +     L +L  S++R +G I   S   T L T+ + +N  +G +P  L++ ++ S I
Sbjct:   416 NLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVI 475

Query:   605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVXXXXXXXXXXX 664
             DLSNN  +G+I   L N     L+VL + NN   G IP    N  YL +           
Sbjct:   476 DLSNNLLTGTIPRWLGNFF---LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGS 532

Query:   665 XXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSM 724
                               N+L+G IP++L    RL+ L    N+ SG+IP +      S+
Sbjct:   533 LPLRSSSDYGYILDL-HNNNLTGSIPDTLWYGLRLLDLR--NNKLSGNIPLFRSTPSISV 589

Query:   725 VILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS----AMVTVD---Y 777
             V+L  R N   G+ P ELC L+++++LD  +N L+ +IP C++NLS         D   Y
Sbjct:   590 VLL--RENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWY 647

Query:   778 P---LGDTHPGITDCSLYRSCLPRPRSFSD-----PIEKAFLVMKGKELEYSTILYLVAL 829
             P   L +     T+   Y S +   R   D      ++  F V +  +L     L  +  
Sbjct:   648 PASLLSNFMEIYTEV-YYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFG 706

Query:   830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
             +DLS N  SG IP E+ DL  +RSLNLS N  SG IP S   ++SIE +D S N+L   I
Sbjct:   707 LDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTI 766

Query:   890 PRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGNDL-CGSPLSRNCTETV--- 945
             P                    G IP   Q  +F    ++GN L CGSP  R+C  T    
Sbjct:   767 PSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGTTISS 826

Query:   946 --PMPQXXXXXXXXXXXXWF-----YVSMALGCVVGFWFVIGPLIVNRRWRYMYSVFLDR 998
                               W+     YV++ +G +V   F   P    R W  +   F+DR
Sbjct:   827 GKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFD-SPW--RRAWFCLVDTFIDR 883

Query:   999 LGD 1001
             + D
Sbjct:   884 VKD 886

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 3.1e-56, P = 3.1e-56
 Identities = 236/845 (27%), Positives = 363/845 (42%)

Query:   124 GKINP--SLLHFQHLNYLDLSGNSFGGG-IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGN 180
             G++ P  SL   QHL  ++L+ N+F    IP       +L+ LNLS + F G I  +L  
Sbjct:   111 GRLEPNSSLFRLQHLQSVNLAYNNFTNSPIPAEFSKFMRLERLNLSRSSFSGHISIKLLQ 170

Query:   181 LSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXX 240
             L+ L  LDL  +      +LS    L  L  L L  +NL +    S+ I+          
Sbjct:   171 LTNLVSLDLSSSFPYSPSSLSIEKPL-FLHLLALNFMNLRELDMSSVDISSAIPIEFSYM 229

Query:   241 XGCQLDHFHPPPIVNISSISVL---DLSSNQFDQN-SLVLSWVFGLSN--LVYLDLGSND 294
                +        ++     SVL   +L S   D N +L  S    L N  L+ L + +  
Sbjct:   230 WSLRSLTLKGCNLLGRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRNNSLLKLSIYNTS 289

Query:   295 FQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANL 354
             F G+IP  + NL  L  L L  + F+  IP+ L S S+L ++ L  N+  G I   ++NL
Sbjct:   290 FSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSVSNL 349

Query:   355 SASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESW 414
                + + D+S   L G  P S   L NL ++   D+  S   +  L    S +S+ LE +
Sbjct:   350 K-QLTLFDVSDNNLNGNFPSS---LLNLNQLRYIDI-CSNHFTGFLPPTISQLSN-LEFF 403

Query:   415 DMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXXXXXX-ERVVLSNNTLKGYL 473
                     G + S + +  SL +L LS+N                 +R++L NN  K   
Sbjct:   404 SACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNFKASQ 463

Query:   474 SEIHL-ANLSKLVSFDVSGNAL-TLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNV 531
              ++ +  +L +LVS  +SG  L T  +  D      LE L+L  C++   FP ++ +Q  
Sbjct:   464 VDLDVFLSLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNI-IEFPEFIRNQRN 522

Query:   532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTV--DLSSNN 589
             L  +D+S + I+  VP   W   P+L  ++ SN+ + G   +L   +G + V  DLSSN 
Sbjct:   523 LSSIDLSNNNIKGQVPNWLWRL-PELSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNA 581

Query:   590 LSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCW-MNF 648
               G L +    ++    S N F+G I P +C G+   L +L+L NN+  G IP C     
Sbjct:   582 FQGPLFMPPRGIQYFLGSYNNFTGYIPPSIC-GLANPL-ILDLSNNNLHGLIPRCLEAQM 639

Query:   649 LYLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDGNQ 708
               L V                             N+L G++P SL+ C+ L  LN++ N 
Sbjct:   640 SSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEILNVESNN 699

Query:   709 FSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTE--LCF-LTSLQILDLGYNNLSGAIPKC 765
              +   P W+      + +L LRSN F G       + F    L+I D+ +N+  G +P  
Sbjct:   700 INDTFPFWLNS-LPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFVGTLPS- 757

Query:   766 ISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILY 825
                       DY +  T    ++  L     P    +   +    L+ KG  +E   IL 
Sbjct:   758 ----------DYFMNWTAISKSETELQYIGDPEDYGYYTSL---VLMNKGVSMEMQRILT 804

Query:   826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
                +ID + N   G+IP  V  L  L  LNLS N F+G IP S+  + ++E +D S N++
Sbjct:   805 KYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQNKI 864

Query:   886 SEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGND-LCGSPLSRNCTET 944
               EIP                    G IP  TQ    + S + GN  + GS L   C + 
Sbjct:   865 GGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVCGDI 924

Query:   945 -VPMP 948
               P P
Sbjct:   925 HAPRP 929

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 5.8e-55, P = 5.8e-55
 Identities = 243/910 (26%), Positives = 384/910 (42%)

Query:   129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKG-MIPHQLGNLSKLQYL 187
             SL   ++L  LDLS + F   I  FL +   L  L L+        +  +  +L+ L++L
Sbjct:    67 SLSRLRNLEILDLSSHRFNNSIFPFLNAATSLTTLFLTYNNMHSPFLVKEFKDLTNLEHL 126

Query:   188 DLVEN---SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQ 244
             DL  N     +   + + L     L+ LDL   NL  +  +   +N           G  
Sbjct:   127 DLRGNRFNGSIPTQDYNSLRRFRKLEILDLSD-NLFNSRIFPF-LNSATSLKSLSLWGNN 184

Query:   245 LDH-FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSI---- 299
             +   F    + +++++ +LDLS N+F+  S+ +  +F L  L  LDL  N+F  S+    
Sbjct:   185 MGGPFPAKELRDLTNVELLDLSRNRFN-GSIPVRALFALRKLKALDLSDNEFSSSVELQG 243

Query:   300 ------PV-GLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLA 352
                   P+ G     ++  L LS N      P  L S + L  + L SN L G++   LA
Sbjct:   244 KFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALA 303

Query:   353 NLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLE 412
             NL  S+E L L     EG    S G L NL ++ +  +    +  E+    S     +L 
Sbjct:   304 NLE-SLEYLSLFGNNFEGFF--SLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLV 360

Query:   413 SWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXX-XXXXXXXXERVVLSNNTLKG 471
                +  C +   +   + H K L  + LS N                 E ++L NN+   
Sbjct:   361 VIALRSCNL-EKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS 419

Query:   472 YLSEIHLANLSKL-VSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQN 530
             +       NL  L VS +   +      G  WI P  L  ++L         P  L +  
Sbjct:   420 FQLPKSAHNLLFLNVSVNKFNHLFLQNFG--WILP-HLVCVNLAYNGFQGNLPSSLDNMK 476

Query:   531 VLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEI-PNLSKATGLRTVDLSSNN 589
              + +LD+S +     +P RF +    L  L  S+++++GE+ P  +  T L  + + +N 
Sbjct:   477 SIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNL 536

Query:   590 LSGTLPLISFQLESI---DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWM 646
              +G +      L S+   D+SNN  +G I   +  G R  L  L L NN   GEIP    
Sbjct:   537 FTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWI--GERQGLFALQLSNNMLEGEIPTSLF 594

Query:   647 NFLYLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDG 706
             N  YL++                           Q N+LSG IP++L   N +V L++  
Sbjct:   595 NISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTLL-LNVIV-LDLRN 652

Query:   707 NQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCI 766
             N+ SG++P +I  +  ++ IL LR N F GQ P + C L+++Q+LDL  N  +G+IP C+
Sbjct:   653 NRLSGNLPEFINTQ--NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCL 710

Query:   767 SNLSAMV-----TVDYPLGDTHPGITDCSLYRSCLPRPR----SFSDPIEKAFLVMKGKE 817
             SN S  +     +  Y +        D   + S L        + ++   K     K + 
Sbjct:   711 SNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRY 770

Query:   818 LEY-STILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIE 876
               Y    L L+  +DLS+N  SGEIPVE+  LV L +LNLS+N+ SG I +S   +K++E
Sbjct:   771 DAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVE 830

Query:   877 VIDFSNNQLSEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGNDL-CGS 935
              +D S N+L   IP                    G +P   Q  +F+   + GN L CG 
Sbjct:   831 SLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGK 890

Query:   936 PLSRNCTETVPMP-----QXXXXXXXXXXXXW-F---YVSMALGCVVGFWFVIGPLIVNR 986
              +  +C      P     +            W F   YV++ LG +    F   P   +R
Sbjct:   891 SIDISCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFD-SPW--SR 947

Query:   987 RWRYMYSVFL 996
              W Y+   F+
Sbjct:   948 AWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 222/784 (28%), Positives = 355/784 (45%)

Query:   139 LDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVD 198
             L+L+G    G I  + G    L +L+LS     G IP  L NL+ L+ L L  N +L  +
Sbjct:    76 LNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSN-QLTGE 134

Query:   199 NLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISS 258
               S L  L  ++ L +G   L    D    +             C+L    P  +  +  
Sbjct:   135 IPSQLGSLVNIRSLRIGDNEL--VGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVR 192

Query:   259 ISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYND 318
             +  L L  N  +    + + +   S+L       N   G+IP  L  L +L  L+L+ N 
Sbjct:   193 VQSLILQDNYLE--GPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNS 250

Query:   319 FNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGR 378
                 IP+ L   S L ++SL +N LQG I   LA+L  +++ LDLS+  L G+IP  F  
Sbjct:   251 LTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLG-NLQTLDLSANNLTGEIPEEFWN 309

Query:   379 LCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSL 438
             +  L ++ L++  +S  + +   I S+  +  LE   ++G ++ G +  ++   +SL  L
Sbjct:   310 MSQLLDLVLANNHLSGSLPK--SICSN--NTNLEQLVLSGTQLSGEIPVELSKCQSLKQL 365

Query:   439 FLSHNXXXXXXXXXXXXXXXXERVVLSNNTLKGYLSEI--HLANLSKLVSF--DVSG--- 491
              LS+N                  + L NNTL+G LS    +L NL  LV +  ++ G   
Sbjct:   366 DLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLP 425

Query:   492 ---NALT-LKV---------G--PDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYL 535
                +AL  L+V         G  P  I     L+ +D+   H     P  +     L  L
Sbjct:   426 KEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLL 485

Query:   536 DISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTL 594
              + ++ +   +PA       QL  L+ ++++++G IP+      GL  + L +N+L G L
Sbjct:   486 HLRQNELVGGLPASLGNCH-QLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNL 544

Query:   595 P--LISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYL 651
             P  LIS + L  I+LS+N  +G+I P LC G    L   ++ NN F  EIP    N   L
Sbjct:   545 PDSLISLRNLTRINLSHNRLNGTIHP-LC-GSSSYLS-FDVTNNGFEDEIPLELGNSQNL 601

Query:   652 RVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711
                                            N+L+G IP  L  C +L  ++++ N  SG
Sbjct:   602 DRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSG 661

Query:   712 DIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA 771
              IP W+G K S +  L L SN F    PTEL   T L +L L  N+L+G+IP+ I NL A
Sbjct:   662 PIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGA 720

Query:   772 MVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLV---MKGK-ELEYSTILYLV 827
             +  ++           D + +   LP+       + +  L    + G+  +E   +  L 
Sbjct:   721 LNVLNL----------DKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQ 770

Query:   828 ALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE 887
             + +DLS NNF+G+IP  +  L  L +L+LS+N  +G +P S+G MKS+  ++ S N L  
Sbjct:   771 SALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGG 830

Query:   888 EIPR 891
             ++ +
Sbjct:   831 KLKK 834

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.7e-53, Sum P(3) = 6.7e-53
 Identities = 170/646 (26%), Positives = 282/646 (43%)

Query:   251 PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
             P I  + S+ +LDLS+N F  +  + S +   + L  LDL  N F   IP  L +L  L 
Sbjct:    93 PEIGELKSLQILDLSTNNF--SGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLE 150

Query:   311 HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEG 370
              L L  N     +P  L     L  + L  N+L G I   + +    +E L + + Q  G
Sbjct:   151 VLYLYINFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVE-LSMYANQFSG 209

Query:   371 QIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIG 430
              IP S G   +L+ + L   K+   + E L++  +  +  + +  + G   FG       
Sbjct:   210 NIPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGS-----P 264

Query:   431 HFKSLDSLFLSHNXXXXXXXXXXXXXXXXERVVLSNNTLKGYLSEIHLANLSKLVSFDVS 490
             + K+L +L LS+N                + +V+ +  L G +    L  L  L   ++S
Sbjct:   265 NCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPS-SLGMLKNLTILNLS 323

Query:   491 GNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
              N L+  +  +      L  L L    L    P  L     L  L++  +     +P   
Sbjct:   324 ENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEI 383

Query:   551 WEASPQLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSNNLSGTLPL---ISFQLESIDL 606
             W++      L + N+ + GE+P  +++   L+   L +N+  G +P    ++  LE +D 
Sbjct:   384 WKSQSLTQLLVYQNN-LTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDF 442

Query:   607 SNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVXXXXXXXXXXXXX 666
               N  +G I P LC+G +  L++LNL +N   G IP    +   +R              
Sbjct:   443 IGNKLTGEIPPNLCHGRK--LRILNLGSNLLHGTIPASIGHCKTIR-RFILRENNLSGLL 499

Query:   667 XXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVI 726
                             N+  G IP SL +C  L S+N+  N+F+G IP  +G    ++  
Sbjct:   500 PEFSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGN-LQNLGY 558

Query:   727 LNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGI 786
             +NL  N+ +G  P +L    SL+  D+G+N+L+G++P   SN   + T+         GI
Sbjct:   559 MNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGI 618

Query:   787 TDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILY--LVALIDLSKNNFSGEIPVE 844
                      LP  +  S  ++ A     G E+  S  L   L+  +DLS N  +GEIP +
Sbjct:   619 PQF------LPELKKLST-LQIARNAFGG-EIPSSIGLIEDLIYDLDLSGNGLTGEIPAK 670

Query:   845 VTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP 890
             + DL+ L  LN+S N+ +G +   +  + S+  +D SNNQ +  IP
Sbjct:   671 LGDLIKLTRLNISNNNLTGSL-SVLKGLTSLLHVDVSNNQFTGPIP 715

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1011
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-49
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  234 bits (599), Expect = 4e-64
 Identities = 202/665 (30%), Positives = 305/665 (45%), Gaps = 133/665 (20%)

Query: 230 NSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFD----QNSLVLSWVFGLSNL 285
           N+ S +  + LSG  +       I  +  I  ++LS+NQ       +    S     S+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS-----SSL 120

Query: 286 VYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQG 345
            YL+L +N+F GSIP G  ++ +L  LDLS N  +  IPN + SFS+L  + L  N L G
Sbjct: 121 RYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 346 SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS 405
            I   L NL+ S+E L L+S QL GQIPR  G++ +L+ I L    +S            
Sbjct: 179 KIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS------------ 225

Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLS 465
                            G +  +IG   SL+ L L +N+++G IPSSLG L +L+ + L 
Sbjct: 226 -----------------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 466 NNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQ-LEKLDLQSCHLGPTFPF 524
            N L G +    + +L KL+S D+S N+L+ ++ P+ +   Q LE L L S +     P 
Sbjct: 269 QNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNFTGKIPV 326

Query: 525 WLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLSKATGLRTV 583
            L S                          P+L  L   +++ +GEIP NL K   L  +
Sbjct: 327 ALTSL-------------------------PRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361

Query: 584 DLSSNNLSGTLP---LISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
           DLS+NNL+G +P     S  L  + L +N+  G I   L  G    L+ + L++NSFSGE
Sbjct: 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQDNSFSGE 419

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
           +P  +     +  L++ NNN  G +      + SL +L L +N   G +P+S     RL 
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLE 478

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
           +L++  NQFSG +P  +G   S ++ L L  N   G+ P EL     L  LDL +N LSG
Sbjct: 479 NLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEY 820
            IP                                     SFS+                
Sbjct: 538 QIPA------------------------------------SFSE---------------- 545

Query: 821 STILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDF 880
              + +++ +DLS+N  SGEIP  + ++ +L  +N+S+NH  G +P S GA  +I     
Sbjct: 546 ---MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP-STGAFLAINASAV 601

Query: 881 SNNQL 885
           + N  
Sbjct: 602 AGNID 606

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (597), Expect = 8e-64
 Identities = 209/716 (29%), Positives = 294/716 (41%), Gaps = 157/716 (21%)

Query: 36  EREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPIS 95
           E E LL FK  + DP   L +WN +   AD C W G+ C+N +  V+ + L         
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQGITCNNSS-RVVSIDLSG------- 78

Query: 96  YHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPR-FL 154
                                       GKI+ ++    ++  ++LS N   G IP    
Sbjct: 79  ------------------------KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIF 114

Query: 155 GSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN---SELYVDNLSWLPGLSLLQH 211
            +   L+YLNLS   F G IP   G++  L+ LDL  N    E+  D             
Sbjct: 115 TTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND------------- 159

Query: 212 LDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQ 271
                            I S SSL+VL L G  L    P  + N++S+  L L+SNQ   
Sbjct: 160 -----------------IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG 202

Query: 272 NSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFS 331
              +   +  + +L ++ LG N+  G IP  +  LTSL HLDL YN+    IP+ L +  
Sbjct: 203 Q--IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260

Query: 332 NLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVK 391
           NL ++ L  N L G I   + +L   I  LDLS   L G+IP    +L NL         
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQLQNL--------- 310

Query: 392 MSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPS 451
                 EIL +FS+         + TG KI   LTS       L  L L  N  SG IP 
Sbjct: 311 ------EILHLFSN---------NFTG-KIPVALTS----LPRLQVLQLWSNKFSGEIPK 350

Query: 452 SLGGLSSLERVVLSNNTLKGYLSE--IHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLE 509
           +LG  ++L  + LS N L G + E      NL KL+ F    N+L  ++         L 
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPKSLGACRSLR 407

Query: 510 KLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRING 569
           ++ LQ        P       ++ +LDIS + +Q  + +R W+  P L  L+ + ++  G
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM-PSLQMLSLARNKFFG 466

Query: 570 EIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQV 629
            +P+   +  L  +DLS N  SG +P                 GS+S         EL  
Sbjct: 467 GLPDSFGSKRLENLDLSRNQFSGAVPR-KL-------------GSLS---------ELMQ 503

Query: 630 LNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRI 689
           L L  N  SGEIPD                         L S   L  L L  N LSG+I
Sbjct: 504 LKLSENKLSGEIPD------------------------ELSSCKKLVSLDLSHNQLSGQI 539

Query: 690 PESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFL 745
           P S S    L  L++  NQ SG+IP  +G    S+V +N+  N   G  P+   FL
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  224 bits (572), Expect = 1e-60
 Identities = 214/743 (28%), Positives = 314/743 (42%), Gaps = 178/743 (23%)

Query: 255 NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLD 313
           N S +  +DLS      +  + S +F L  +  ++L +N   G IP  +   + SLR+L+
Sbjct: 67  NSSRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 314 LSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIP 373
           LS N+F  SIP                        G + NL    E LDLS+  L G+IP
Sbjct: 125 LSNNNFTGSIPR-----------------------GSIPNL----ETLDLSNNMLSGEIP 157

Query: 374 RSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFK 433
              G   +L+ +                             D+ G  + G + + + +  
Sbjct: 158 NDIGSFSSLKVL-----------------------------DLGGNVLVGKIPNSLTNLT 188

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
           SL+ L L+ N + G IP  LG + SL+ + L  N L G +    +  L+ L   D+  N 
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNN 247

Query: 494 LTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEA 553
           LT   GP  IP       +LQ         +  L QN L                     
Sbjct: 248 LT---GP--IPSSLGNLKNLQ---------YLFLYQNKL--------------------- 272

Query: 554 SPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESID---LSNN 609
                         +G IP  +     L ++DLS N+LSG +P +  QL++++   L +N
Sbjct: 273 --------------SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 610 AFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL 669
            F+G I   L +  R  LQVL L +N FSGEIP        L VL+L  NN TG +P  L
Sbjct: 319 NFTGKIPVALTSLPR--LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Query: 670 GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNL 729
            S G+L  L L  NSL G IP+SL  C  L  + +  N FSG++P+    K   +  L++
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDI 435

Query: 730 RSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIP-----KCISNLSAMVTVDYPLGDTHP 784
            +N   G+  +    + SLQ+L L  N   G +P     K + NL               
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL--------------- 480

Query: 785 GITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVE 844
              D S  +     PR                    S ++ L     LS+N  SGEIP E
Sbjct: 481 ---DLSRNQFSGAVPRKL---------------GSLSELMQL----KLSENKLSGEIPDE 518

Query: 845 VTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNL 904
           ++    L SL+LS+N  SG+IP S   M  +  +D S NQLS EIP+++ N+  L  +N+
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 905 SYNYLSGEIPTSTQLQSFDASCFIGN-DLCGSPLS---RNCTETVPMPQDGNGEDDEDEV 960
           S+N+L G +P++    + +AS   GN DLCG   +     C      P            
Sbjct: 579 SHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTP-----------S 627

Query: 961 EWFYVSMALGC-----VVGFWFV 978
            WFY++  LG      +V F FV
Sbjct: 628 WWFYITCTLGAFLVLALVAFGFV 650

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  189 bits (481), Expect = 3e-49
 Identities = 167/554 (30%), Positives = 260/554 (46%), Gaps = 41/554 (7%)

Query: 398 EILDIFSSCISD---RLESWDMTG--CKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSS 452
           E+L  F S I+D    L +W+ +   C   G   +      S+D   LS  +ISG I S+
Sbjct: 32  ELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSID---LSGKNISGKISSA 88

Query: 453 LGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLD 512
           +  L  ++ + LSNN L G + +      S L   ++S N  T  +    IP   LE LD
Sbjct: 89  IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP--NLETLD 146

Query: 513 LQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP 572
           L +  L    P  + S + L  LD+  + +   +P      +  L FL  +++++ G+IP
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIP 205

Query: 573 -NLSKATGLRTVDLSSNNLSGTLPLISFQLESI---DLSNNAFSGSISPVLCNGMRGELQ 628
             L +   L+ + L  NNLSG +P     L S+   DL  N  +G I   L  G    LQ
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--GNLKNLQ 263

Query: 629 VLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGR 688
            L L  N  SG IP    +   L  L+L +N+ +G +P  +  L +L +LHL  N+ +G+
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 689 IPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSL 748
           IP +L++  RL  L +  N+FSG+IP  +G K +++ +L+L +N   G+ P  LC   +L
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 749 QILDLGYNNLSGAIPKCISNLSAMVTV----DYPLGDTHPGITDCSLYRSCLPRPRSFSD 804
             L L  N+L G IPK +    ++  V    +   G+     T   L         +   
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Query: 805 PIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR 864
            I      M   ++           + L++N F G +P +      L +L+LS N FSG 
Sbjct: 443 RINSRKWDMPSLQM-----------LSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGA 490

Query: 865 IPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQ----LQ 920
           +P  +G++  +  +  S N+LS EIP  +S+   L  L+LS+N LSG+IP S      L 
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 921 SFDASCFIGNDLCG 934
             D S    N L G
Sbjct: 551 QLDLSQ---NQLSG 561

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 41/103 (39%), Positives = 56/103 (54%)

Query: 630 LNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRI 689
           L L+N    G IP+      +L+ +NL  N+  GN+PPSLGS+ SL +L L  NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 690 PESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN 732
           PESL     L  LN++GN  SG +P  +G +       N   N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.9 bits (205), Expect = 3e-16
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
           + L      G IP +++ L  L+S+NLS N   G IP S+G++ S+EV+D S N  +  I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 890 PRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGND---LCGSPLSRNCTETVP 946
           P S+  LT L +LNL+ N LSG +P +   +    + F   D   LCG P  R C   + 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLS 542

Query: 947 MPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIG 980
           +                 + +A G  V F F++ 
Sbjct: 543 VGAK--------------IGIAFGVSVAFLFLVI 562

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 2e-11
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 627 LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS 686
           LQ +NL  NS  G IP    +   L VL+L  N+F G++P SLG L SL +L+L  NSLS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 687 GRIPESL 693
           GR+P +L
Sbjct: 504 GRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 9/100 (9%)

Query: 583 VDLSSNNLSGTLP--LISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
           + L +  L G +P  +   + L+SI+LS N+  G+I P L  G    L+VL+L  NSF+G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNG 480

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLH 679
            IP+       LR+LNL  N+ +G +P +LG      LLH
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGR----LLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 4e-09
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 29/136 (21%)

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           I+ L L +Q L G IP    +L +L+ I+LS                             
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLS----------------------------- 450

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
           G  I G++   +G   SL+ L LS+NS +G IP SLG L+SL  + L+ N+L G +    
Sbjct: 451 GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Query: 478 LANLSKLVSFDVSGNA 493
              L    SF+ + NA
Sbjct: 511 GGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 3e-08
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           L +L  ++L  N  +G+IP  L ++TSL  LDLSYN FN SIP  L   ++L  ++L  N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 342 SLQGSITGFL 351
           SL G +   L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 29/61 (47%), Positives = 38/61 (62%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
            +HL  ++LSGNS  G IP  LGS+  L+ L+LS   F G IP  LG L+ L+ L+L  N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 193 S 193
           S
Sbjct: 501 S 501

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 33 IESEREALLKFKKDL-KDPSNRLVSWNGAGDGADCCKWSGVVCD 75
          +  +R+ALL FK  L  DPS  L SWN     +D C W+GV CD
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNP--SSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQ 371
           L L        IPN ++   +L  I+L  NS++G+I   L +++ S+EVLDLS     G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGS 481

Query: 372 IPRSFGRLCNLREISLSDVKMS 393
           IP S G+L +LR ++L+   +S
Sbjct: 482 IPESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 69/305 (22%), Positives = 112/305 (36%), Gaps = 60/305 (19%)

Query: 224 DWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLS 283
             +  +  L  L+VLRL G             +   +   L+S    Q SL       L+
Sbjct: 14  RATELLPKLLCLQVLRLEGN-----------TLGEEAAKALASALRPQPSLKEL-CLSLN 61

Query: 284 NLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASF---SNLVHISLRS 340
               +  G      S+  GL     L+ LDLS N         L S    S+L  + L +
Sbjct: 62  ETGRIPRGL----QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 341 NSLQGSITGFLA----NLSASIEVLDLSSQQLEGQIPRS----FGRLCNLREISLSD--- 389
           N L       LA    +L  ++E L L   +LEG    +         +L+E++L++   
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 390 -----------VKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSL 438
                      +K + ++ E+LD+ ++ ++D        G        +     KSL+ L
Sbjct: 178 GDAGIRALAEGLKANCNL-EVLDLNNNGLTD-------EGASALAETLA---SLKSLEVL 226

Query: 439 FLSHNSISG-----LIPSSLGGLSSLERVVLSNN--TLKGYLSEIH-LANLSKLVSFDVS 490
            L  N+++      L  + L    SL  + LS N  T  G       LA    L+  D+ 
Sbjct: 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286

Query: 491 GNALT 495
           GN   
Sbjct: 287 GNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 34/151 (22%)

Query: 515 SCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-N 573
            C    T   W +       L +   G++  +P         L  +N S + I G IP +
Sbjct: 408 DCQFDSTKGKWFIDG-----LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPS 461

Query: 574 LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
           L   T L  +DLS N+ +G++P      ES+                 G    L++LNL 
Sbjct: 462 LGSITSLEVLDLSYNSFNGSIP------ESL-----------------GQLTSLRILNLN 498

Query: 634 NNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN 664
            NS SG +P      L  R+L+  + NFT N
Sbjct: 499 GNSLSGRVPAA----LGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
           +L SL LS+N ++ +   +  GL +L+ + LS N L   +S    + L  L S D+SGN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 494 L 494
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 43/109 (39%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 124 GKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK 183
           G I PSL     L  LDLS NSF G IP  LG +  L+ LNL+G    G +P  LG    
Sbjct: 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL- 514

Query: 184 LQYLDLVENSELYVDN--LSWLPGL-SLLQHLDLGGVNLGKAFDWSLAI 229
                L   S  + DN  L  +PGL +   HL + G  +G AF  S+A 
Sbjct: 515 -----LHRASFNFTDNAGLCGIPGLRACGPHLSV-GAKIGIAFGVSVAF 557

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 58/255 (22%), Positives = 89/255 (34%), Gaps = 45/255 (17%)

Query: 477 HLANLSKLVSFDVSGNALT---LKVGPDWIPPFQ-LEKLDLQSCHLGPTFPFW------L 526
            L  L  L    + GN L     K     + P   L++L L     G            L
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 527 LSQNVLGYLDISRSGIQDTVPARFWEA---SPQLYFLNFSNSRINGEIPNLSKATGLRTV 583
                L  LD+S + +         E+   S  L  L  +N+ +      L  A GL+ +
Sbjct: 78  TKGCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRL-LAKGLKDL 135

Query: 584 -------DLSSNNLSG--------TLPLISFQLESIDLSNNAFSGSISPVLCNGMRG--E 626
                   L  N L G         L      L+ ++L+NN    +    L  G++    
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANR-DLKELNLANNGIGDAGIRALAEGLKANCN 194

Query: 627 LQVLNLENNSFSGE----IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQK 682
           L+VL+L NN  + E    + +   +   L VLNLG+NN        L   G+  L     
Sbjct: 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN--------LTDAGAAALASALL 246

Query: 683 NSLSGRIPESLSNCN 697
           +     +  SLS  +
Sbjct: 247 SPNISLLTLSLSCND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
           L L +   +G IP  +  L  L+ ++LS N    +IP  L S ++L  + L  NS  GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 348 TGFLANLSASIEVLDLSSQQLEGQIPRSFG 377
              L  L  S+ +L+L+   L G++P + G
Sbjct: 483 PESLGQL-TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 79/262 (30%), Positives = 117/262 (44%), Gaps = 40/262 (15%)

Query: 664 NLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSS 723
           +   +L +L  L  L L  N L   I E L   N L SL++D N  + DIP  IG   S+
Sbjct: 84  DGSENLLNLLPLPSLDLNLNRLRSNISELLELTN-LTSLDLDNNNIT-DIPPLIGLLKSN 141

Query: 724 MVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTH 783
           +  L+L  N      P+ L  L +L+ LDL +N+LS  +PK +SNLS            +
Sbjct: 142 LKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS---------NLNN 190

Query: 784 PGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPV 843
             ++   +              IE                L  +  +DLS NN   E+  
Sbjct: 191 LDLSGNKI--------SDLPPEIEL---------------LSALEELDLS-NNSIIELLS 226

Query: 844 EVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLN 903
            +++L  L  L LS N+    +P+SIG + ++E +D SNNQ+S     S+ +LT L  L+
Sbjct: 227 SLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELD 283

Query: 904 LSYNYLSGEIPTSTQLQSFDAS 925
           LS N LS  +P    L      
Sbjct: 284 LSGNSLSNALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 40/255 (15%)

Query: 255 NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDL 314
           ++S +  LDL S     +      +  L  L  LDL  N  + +I   L  LT+L  LDL
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDL 123

Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSL---------------------QGSITGFLAN 353
             N+     P      SNL  + L  N +                       S    L +
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183

Query: 354 LSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD----IFSSCISD 409
             +++  LDLS  ++   +P     L  L E+ LS+  + + +S + +          ++
Sbjct: 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Query: 410 RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTL 469
           +LE            L   IG+  +L++L LS+N IS    SSLG L++L  + LS N+L
Sbjct: 243 KLED-----------LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSL 289

Query: 470 KGYLSEIHLANLSKL 484
              L  I L  L   
Sbjct: 290 SNALPLIALLLLLLE 304

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 284 NLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
           NL  LDL +N     IP G  + L +L+ LDLS N+  S  P   +   +L  + L  N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 343 L 343
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 651 LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQF 709
           L+ L+L NN  T  +P  +   L +L +L L  N+L+   PE+ S    L SL++ GN  
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 258 SISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYN 317
           ++  LDLS+N+     +      GL NL  LDL  N+     P     L SLR LDLS N
Sbjct: 1   NLKSLDLSNNRLT--VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 318 DF 319
           + 
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 69/264 (26%), Positives = 111/264 (42%), Gaps = 18/264 (6%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMG-KLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191
             +L  LDL  N+    IP  +G +   LK L+LS    +  +P  L NL  L+ LDL  
Sbjct: 115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172

Query: 192 NSELYVDNLSWLPG-LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHP 250
           N    + +L  L   LS L +LDL G  +         +++L  L +   S  +L     
Sbjct: 173 ND---LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL----L 225

Query: 251 PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
             + N+ ++S L+LS+N+ +     +     LSNL  LDL +N  Q S    L +LT+LR
Sbjct: 226 SSLSNLKNLSGLELSNNKLEDLPESIG---NLSNLETLDLSNN--QISSISSLGSLTNLR 280

Query: 311 HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEG 370
            LDLS N  ++++P        L    L +  L         N       +  + +    
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLE--LLLNLLLTLKALELKLNSILLNNNILSNGETSSP 338

Query: 371 QIPRSFGRLCNLREISLSDVKMSQ 394
           +       L NL  +  +  + + 
Sbjct: 339 EALSILESLNNLWTLDNALDESNL 362

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 48/205 (23%), Positives = 73/205 (35%), Gaps = 58/205 (28%)

Query: 573 NLSKATGLRTVDLSSNNLSGTLP------LISFQLESIDLSNNAFSGSISPVLCNGMRGE 626
            L+K  GL+ +DLS N L           L S  L+ + L+NN        +L  G++  
Sbjct: 76  GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-- 133

Query: 627 LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSL----GSLTLLHLQK 682
                           D       L  L LG N   G    +L         L  L+L  
Sbjct: 134 ----------------DLPPA---LEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174

Query: 683 NSLSGRIPESL-----SNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQ 737
           N +      +L     +NCN L  L+++ N       T  G    +  + +L+S      
Sbjct: 175 NGIGDAGIRALAEGLKANCN-LEVLDLNNNGL-----TDEGASALAETLASLKS------ 222

Query: 738 FPTELCFLTSLQILDLGYNNLSGAI 762
                     L++L+LG NNL+ A 
Sbjct: 223 ----------LEVLNLGDNNLTDAG 237

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 851 LRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYL 909
           L+SL+LS N  +     +   + +++V+D S N L+   P + S L  L  L+LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 19/59 (32%), Positives = 25/59 (42%)

Query: 135 HLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
           +L  LDLS N            +  LK L+LSG     + P     L  L+ LDL  N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.2 bits (99), Expect = 0.002
 Identities = 85/307 (27%), Positives = 125/307 (40%), Gaps = 65/307 (21%)

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
           +NL  L L        +P  +Q L  L  LD+S  +    +P  +    NL   SL   +
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLK--SLYRLN 710

Query: 343 LQG-SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
           L G S      ++S +I  LDL    +E + P +  RL NL E+ L ++K          
Sbjct: 711 LSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMK---------- 758

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLER 461
             S  + +R++            L + +    SL  LFLS       +PSS+  L  LE 
Sbjct: 759 --SEKLWERVQ--------PLTPLMTMLSP--SLTRLFLSDIPSLVELPSSIQNLHKLEH 806

Query: 462 VVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPT 521
           + + N             NL  L               P  I    LE LDL  C    T
Sbjct: 807 LEIENCI-----------NLETL---------------PTGINLESLESLDLSGCSRLRT 840

Query: 522 FPFWLLSQNVLGYLDISRSGIQDTVPARFW-EASPQLYFLNFSN-SRINGEIPNLSKATG 579
           FP   +S N+   L++SR+GI++ VP  +W E    L FL+ +  + +     N+SK   
Sbjct: 841 FPD--ISTNISD-LNLSRTGIEE-VP--WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894

Query: 580 LRTVDLS 586
           L TVD S
Sbjct: 895 LETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 26/96 (27%)

Query: 229 INSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYL 288
           I+ L  L+ + LSG  +    PP + +I+S+ VLDLS N F+                  
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN------------------ 479

Query: 289 DLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIP 324
                   GSIP  L  LTSLR L+L+ N  +  +P
Sbjct: 480 --------GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 139 LDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
           L L      G IP  +  +  L+ +NLSG   +G IP  LG+++ L+ LDL  NS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1011
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.55
PLN03150	623	hypothetical protein; Provisional	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.79
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.77
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.04
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.9
KOG4341	483	consensus F-box protein containing LRR [General fu	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
KOG4341	483	consensus F-box protein containing LRR [General fu	97.67
PRK15386	426	type III secretion protein GogB; Provisional	97.65
PRK15386	426	type III secretion protein GogB; Provisional	97.59
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.14
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.55
KOG4308	478	consensus LRR-containing protein [Function unknown	95.37
KOG4308	478	consensus LRR-containing protein [Function unknown	93.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.76
smart00370	26	LRR Leucine-rich repeats, outliers.	85.76
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.63
smart00370	26	LRR Leucine-rich repeats, outliers.	84.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.6

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-71  Score=708.16  Aligned_cols=583  Identities=35%  Similarity=0.560  Sum_probs=386.1

Q ss_pred             CHHHHHHHHhhhccCCCCCCCccCCCCCCCCCCCccceeeEecCCCCceEEEEcCCCCCCCCCCCCCCcchhhhhhcccc
Q 001801           33 IESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGA  112 (1011)
Q Consensus        33 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (1011)
                      +++|++||++||+++.+|.+.+.+|.   .+++||.|+||+|++ .++|+.|+|+++                       
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~-----------------------   79 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGK-----------------------   79 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCC-----------------------
Confidence            56899999999999988888889997   577899999999985 679999999984                       


Q ss_pred             hhhhhccccCCccccccccCCCCCCEEECCCCCCCCCCCcccc-CCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCC
Q 001801          113 EYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLG-SMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE  191 (1011)
Q Consensus       113 ~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~  191 (1011)
                              .+.|.+++.+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|++++.+|.  +.+++|++|+|++
T Consensus        80 --------~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~  149 (968)
T PLN00113         80 --------NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN  149 (968)
T ss_pred             --------CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC
Confidence                    67788888999999999999999999888887655 899999999999998887774  3344455555444


Q ss_pred             CCCcCCCCCCCCCCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCC
Q 001801          192 NSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQ  271 (1011)
Q Consensus       192 n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  271 (1011)
                      |                                                   .+++..|..++++++|++|++++|.+.+
T Consensus       150 n---------------------------------------------------~~~~~~p~~~~~l~~L~~L~L~~n~l~~  178 (968)
T PLN00113        150 N---------------------------------------------------MLSGEIPNDIGSFSSLKVLDLGGNVLVG  178 (968)
T ss_pred             C---------------------------------------------------cccccCChHHhcCCCCCEEECccCcccc
Confidence            3                                                   3333333334444444444444444433


Q ss_pred             ChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHH
Q 001801          272 NSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL  351 (1011)
Q Consensus       272 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l  351 (1011)
                      .  .|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|.. 
T Consensus       179 ~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-  255 (968)
T PLN00113        179 K--IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-  255 (968)
T ss_pred             c--CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-
Confidence            2  4444444444444444444444444444444444444444444444444444444444444444444444444444 


Q ss_pred             HhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccC
Q 001801          352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGH  431 (1011)
Q Consensus       352 ~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~  431 (1011)
                                              ++++++|++|++++|.                             +.+.+|..+.+
T Consensus       256 ------------------------l~~l~~L~~L~L~~n~-----------------------------l~~~~p~~l~~  282 (968)
T PLN00113        256 ------------------------LGNLKNLQYLFLYQNK-----------------------------LSGPIPPSIFS  282 (968)
T ss_pred             ------------------------HhCCCCCCEEECcCCe-----------------------------eeccCchhHhh
Confidence                                    4444444444444433                             33333444444


Q ss_pred             CCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCcccccee
Q 001801          432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKL  511 (1011)
Q Consensus       432 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  511 (1011)
                      +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.                
T Consensus       283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~----------------  345 (968)
T PLN00113        283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFS----------------  345 (968)
T ss_pred             ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCCc----------------
Confidence            44445555555555444555555555555555555554443332 2222222222222211111                


Q ss_pred             ecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccC
Q 001801          512 DLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLS  591 (1011)
Q Consensus       512 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~  591 (1011)
                                                      +.+|.                                           
T Consensus       346 --------------------------------~~~p~-------------------------------------------  350 (968)
T PLN00113        346 --------------------------------GEIPK-------------------------------------------  350 (968)
T ss_pred             --------------------------------CcCCh-------------------------------------------
Confidence                                            11111                                           


Q ss_pred             ccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccC
Q 001801          592 GTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGS  671 (1011)
Q Consensus       592 ~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  671 (1011)
                                                .+..  +++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..++.
T Consensus       351 --------------------------~l~~--~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  402 (968)
T PLN00113        351 --------------------------NLGK--HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA  402 (968)
T ss_pred             --------------------------HHhC--CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence                                      0000  234444455555555555555555555666666666666666666666


Q ss_pred             CCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEE
Q 001801          672 LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQIL  751 (1011)
Q Consensus       672 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  751 (1011)
                      +++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|.+.+.+|..+ ..++|+.|
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L  480 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENL  480 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence            66666666666666666666666666666666666666666665554 56666666666666666666554 34788888


Q ss_pred             EccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEE
Q 001801          752 DLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALID  831 (1011)
Q Consensus       752 ~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ld  831 (1011)
                      ++++|++++.+|..+.++++|                                                       +.||
T Consensus       481 ~ls~n~l~~~~~~~~~~l~~L-------------------------------------------------------~~L~  505 (968)
T PLN00113        481 DLSRNQFSGAVPRKLGSLSEL-------------------------------------------------------MQLK  505 (968)
T ss_pred             ECcCCccCCccChhhhhhhcc-------------------------------------------------------CEEE
Confidence            888888888888877766665                                                       5689


Q ss_pred             ccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccc
Q 001801          832 LSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG  911 (1011)
Q Consensus       832 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  911 (1011)
                      |++|+++|.+|..++++++|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+.||+++|+++|
T Consensus       506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCccCccccCCC-CCCCCC
Q 001801          912 EIPTSTQLQSFDASCFIGN-DLCGSP  936 (1011)
Q Consensus       912 ~iP~~~~~~~~~~~~~~~n-~lcg~~  936 (1011)
                      .+|..+++.++...+|.|| .+||.+
T Consensus       586 ~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        586 SLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             eCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999 899865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-56  Score=570.24  Aligned_cols=515  Identities=38%  Similarity=0.566  Sum_probs=377.3

Q ss_pred             CCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhh-CCCCCcEEEccCCCCcccCcccccCCCCCCE
Q 001801          233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH  311 (1011)
Q Consensus       233 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  311 (1011)
                      .+++.|++++|.+++..+..+..+++|++|+|++|.+.+.  +|..+. .+++|++|++++|.+++.+|.  +.+++|++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~  144 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET  144 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc--CChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence            4567777777777776666666677777777777766543  554443 666666666666666666554  34566666


Q ss_pred             EeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCcc
Q 001801          312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVK  391 (1011)
Q Consensus       312 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  391 (1011)
                      |++++|.+++.+|..++++++|++|++++|.+.+.+|..+.+++ +|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            66666666666666666666666666666666666666666665 66666666666666666666666666666555555


Q ss_pred             CCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCcccc
Q 001801          392 MSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG  471 (1011)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  471 (1011)
                                                   +.+.+|..++++++|++|++++|++++.+|..++++++|++|++++|.+.+
T Consensus       224 -----------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        224 -----------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             -----------------------------cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence                                         444555555555666666666666555555555555555555555555554


Q ss_pred             ccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHh
Q 001801          472 YLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFW  551 (1011)
Q Consensus       472 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~  551 (1011)
                      .+|. .+.++++|++                                                |++++|.+.+.+|..+.
T Consensus       275 ~~p~-~l~~l~~L~~------------------------------------------------L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        275 PIPP-SIFSLQKLIS------------------------------------------------LDLSDNSLSGEIPELVI  305 (968)
T ss_pred             cCch-hHhhccCcCE------------------------------------------------EECcCCeeccCCChhHc
Confidence            4443 3333333333                                                33333333333332221


Q ss_pred             hhcCcccccccccccccccCCCccccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEe
Q 001801          552 EASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLN  631 (1011)
Q Consensus       552 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  631 (1011)
                       .                       +++|+.|++++|.++                     +.+|..+..  +++|+.|+
T Consensus       306 -~-----------------------l~~L~~L~l~~n~~~---------------------~~~~~~~~~--l~~L~~L~  338 (968)
T PLN00113        306 -Q-----------------------LQNLEILHLFSNNFT---------------------GKIPVALTS--LPRLQVLQ  338 (968)
T ss_pred             -C-----------------------CCCCcEEECCCCccC---------------------CcCChhHhc--CCCCCEEE
Confidence             1                       222333333333222                     222222222  56789999


Q ss_pred             eccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCcccc
Q 001801          632 LENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG  711 (1011)
Q Consensus       632 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  711 (1011)
                      +++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcc
Q 001801          712 DIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSL  791 (1011)
Q Consensus       712 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~  791 (1011)
                      .+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++ .+                     
T Consensus       419 ~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~---------------------  475 (968)
T PLN00113        419 ELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SK---------------------  475 (968)
T ss_pred             ECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cc---------------------
Confidence            9999887 899999999999999999999999999999999999999998887542 12                     


Q ss_pred             cccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccC
Q 001801          792 YRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGA  871 (1011)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  871 (1011)
                                                        .|+.|||++|+++|.+|..+.++++|+.|+|++|+++|.+|..+++
T Consensus       476 ----------------------------------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  521 (968)
T PLN00113        476 ----------------------------------RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS  521 (968)
T ss_pred             ----------------------------------cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence                                              2378999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccccCCCC-cccCccCccccCCCCCCC
Q 001801          872 MKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS-TQLQSFDASCFIGNDLCG  934 (1011)
Q Consensus       872 L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~lcg  934 (1011)
                      +++|++|+|++|.++|.+|..++.+++|+.||+++|+++|.+|.. ..+..+......+|.+.|
T Consensus       522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999999999999999999999999999999999999975 233344444456665544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.8e-38  Score=322.78  Aligned_cols=486  Identities=23%  Similarity=0.388  Sum_probs=321.1

Q ss_pred             CCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEE
Q 001801          233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHL  312 (1011)
Q Consensus       233 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  312 (1011)
                      ..|+.+.+++|.++... ..+.++..|.+|++++|++..   .|++++.+..++.++.++|++. .+|+.++.+.+|+.+
T Consensus        45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence            34566666666666553 346677888888888888876   7888888888889999998887 788888888899999


Q ss_pred             eCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccC
Q 001801          313 DLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKM  392 (1011)
Q Consensus       313 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~  392 (1011)
                      ++++|.+. .+|+.++.+..|+.++..+|+++ ..|..+.++. ++..+++.+|++....|..+ +++.|++++...|- 
T Consensus       120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~-  194 (565)
T KOG0472|consen  120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS-KLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL-  194 (565)
T ss_pred             hcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHH-HHHHhhccccchhhCCHHHH-HHHHHHhcccchhh-
Confidence            99999887 66778888888999998888887 5666777777 88888888888885544444 48888888776663 


Q ss_pred             CcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccc
Q 001801          393 SQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGY  472 (1011)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  472 (1011)
                                                   .+.+|..++.+.+|.-|++.+|++. ..| +|.+++.|+++.++.|++. .
T Consensus       195 -----------------------------L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~  242 (565)
T KOG0472|consen  195 -----------------------------LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-M  242 (565)
T ss_pred             -----------------------------hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-h
Confidence                                         5677888888999999999999987 455 7888999999999988887 4


Q ss_pred             cChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhh
Q 001801          473 LSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE  552 (1011)
Q Consensus       473 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~  552 (1011)
                      +|.....+++++..||+.+|+++..                         |..+.                         
T Consensus       243 lpae~~~~L~~l~vLDLRdNklke~-------------------------Pde~c-------------------------  272 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLKEV-------------------------PDEIC-------------------------  272 (565)
T ss_pred             hHHHHhcccccceeeeccccccccC-------------------------chHHH-------------------------
Confidence            6666777888888888888877632                         32222                         


Q ss_pred             hcCcccccccccccccccCCCccccCCCcEEEccCcccCcc---C-CCcc-cCCceeec--ccccCCCCCChhhccCCCC
Q 001801          553 ASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT---L-PLIS-FQLESIDL--SNNAFSGSISPVLCNGMRG  625 (1011)
Q Consensus       553 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~---~-p~~~-~~L~~L~l--s~n~l~~~~~~~~~~~~~~  625 (1011)
                      .+.+|++||+++|.+++..+.++++ .|+.|-+.+|.+...   + .... .-|++|.=  ..-.++..-     .+   
T Consensus       273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se-----~~---  343 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE-----GG---  343 (565)
T ss_pred             HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc-----cc---
Confidence            2345666666666666555556655 666666666665310   0 0000 00111100  000000000     00   


Q ss_pred             cccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCc---ccEEeCcCCcccccCCccccCCCCCcEE
Q 001801          626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGS---LTLLHLQKNSLSGRIPESLSNCNRLVSL  702 (1011)
Q Consensus       626 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~~p~~l~~l~~L~~L  702 (1011)
                      +-..-+    ...+..| ......+.+.|++++-+++ .+|........   ....+++.|++. .+|..+..+..+.+.
T Consensus       344 ~e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~  416 (565)
T KOG0472|consen  344 TETAMT----LPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTD  416 (565)
T ss_pred             ccccCC----CCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHH
Confidence            000000    0001111 1223345566666666666 44443333222   556666666665 566655555544433


Q ss_pred             -EcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCC
Q 001801          703 -NMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD  781 (1011)
Q Consensus       703 -~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~  781 (1011)
                       .+++|.+ +.+|..+. .+++|..|+|++|.+. .+|.+++.+..|+.||+|.|+|. .+|+++..+..+         
T Consensus       417 l~lsnn~i-sfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l---------  483 (565)
T KOG0472|consen  417 LVLSNNKI-SFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL---------  483 (565)
T ss_pred             HHhhcCcc-ccchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH---------
Confidence             3333333 35565555 5677777777776666 56777777778888888888876 677765544433         


Q ss_pred             CCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccc
Q 001801          782 THPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHF  861 (1011)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  861 (1011)
                                                                    +.+--++|++...-|..+.++.+|..|||.+|.+
T Consensus       484 ----------------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  484 ----------------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL  517 (565)
T ss_pred             ----------------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence                                                          1223345777655556688999999999999999


Q ss_pred             cccccccccCCCCCCEEeCcCCccc
Q 001801          862 SGRIPDSIGAMKSIEVIDFSNNQLS  886 (1011)
Q Consensus       862 ~g~ip~~l~~L~~L~~L~Ls~N~l~  886 (1011)
                      . .||+.++++++|++|++++|.+.
T Consensus       518 q-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  518 Q-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             h-hCChhhccccceeEEEecCCccC
Confidence            8 88889999999999999999997

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=315.05  Aligned_cols=364  Identities=23%  Similarity=0.255  Sum_probs=215.4

Q ss_pred             cEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEeccc
Q 001801          286 VYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSS  365 (1011)
Q Consensus       286 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~  365 (1011)
                      +.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.++....+.+..++ .|+.||||.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhh
Confidence            34555555555555555666666666666666665 4555444555566666666666665556666665 666666666


Q ss_pred             CcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcC
Q 001801          366 QQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSI  445 (1011)
Q Consensus       366 n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l  445 (1011)
                      |.++..--.+|..-.                                                     ++++|+|++|.|
T Consensus       159 N~is~i~~~sfp~~~-----------------------------------------------------ni~~L~La~N~I  185 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKV-----------------------------------------------------NIKKLNLASNRI  185 (873)
T ss_pred             chhhcccCCCCCCCC-----------------------------------------------------CceEEeeccccc
Confidence            666533323333333                                                     444444444444


Q ss_pred             CCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCcccc
Q 001801          446 SGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFW  525 (1011)
Q Consensus       446 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  525 (1011)
                      +..-...|.++.+|..|.|+.|+++. +|...|.++++|+.|+|..|++.......|..+++|+.|.+..|.+...-...
T Consensus       186 t~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~  264 (873)
T KOG4194|consen  186 TTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA  264 (873)
T ss_pred             cccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence            44444445555555555555555543 33334555555555555555555444555555555555555555555555555


Q ss_pred             ccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCC-ccccCCCcEEEccCcccCccCCCcccCCcee
Q 001801          526 LLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESI  604 (1011)
Q Consensus       526 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L  604 (1011)
                      |..+.++++|+++.|++...-..|++ +++.|+.|++++|.|...-+. +..                            
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~Wsf----------------------------  315 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSF----------------------------  315 (873)
T ss_pred             eeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhh----------------------------
Confidence            55566666666666655543333332 233444444444443322111 111                            


Q ss_pred             ecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCc
Q 001801          605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNS  684 (1011)
Q Consensus       605 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  684 (1011)
                                         .++|++|+|++|+++..-++.|..+..|++|+|++|.++..-...|.++++|++|||++|.
T Consensus       316 -------------------tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  316 -------------------TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             -------------------cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence                               3567777777777776667777777777777777777776666667777777777777777


Q ss_pred             ccccCC---ccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccC
Q 001801          685 LSGRIP---ESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGY  755 (1011)
Q Consensus       685 l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  755 (1011)
                      +++.+-   ..|.++++|+.|++.+|++. .||...+..+..|++|||.+|.+...-|.+|..+ .|+.|.+..
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            776553   34666777777778777776 6777666677777888888877777777777776 777666544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=314.20  Aligned_cols=365  Identities=22%  Similarity=0.250  Sum_probs=286.9

Q ss_pred             cEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcce
Q 001801          334 VHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLES  413 (1011)
Q Consensus       334 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~  413 (1011)
                      +.|++++|+++...+..|.+++ +|+++++..|.++ .+|...+...+|+.|+|.+|.+                     
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I---------------------  137 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLI---------------------  137 (873)
T ss_pred             eeeeccccccccCcHHHHhcCC-cceeeeeccchhh-hcccccccccceeEEeeecccc---------------------
Confidence            3456666666655555666665 6666666666655 4555444445577777776663                     


Q ss_pred             eeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCe
Q 001801          414 WDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA  493 (1011)
Q Consensus       414 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  493 (1011)
                              ...-.+.+..++.|+.|||+.|.|+...-.+|..-.++++|+|++|+|+. +....|..+.+|..|.|+.|.
T Consensus       138 --------~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  138 --------SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             --------ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCc
Confidence                    33333445566778888888888886655677777899999999999997 445589999999999999999


Q ss_pred             eeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCC
Q 001801          494 LTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN  573 (1011)
Q Consensus       494 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~  573 (1011)
                      ++..+...|..+++|+.|+|..|++...---.|.++++|+.|.+.+|++...-...| -.                    
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F-y~--------------------  267 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF-YG--------------------  267 (873)
T ss_pred             ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce-ee--------------------
Confidence            999999999999999999999999976556678999999999999999874333322 22                    


Q ss_pred             ccccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcE
Q 001801          574 LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV  653 (1011)
Q Consensus       574 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  653 (1011)
                         +.++++|+|+.|+++                     ..-..+++.  +++|+.|++++|.|..+-++.|.-+++|++
T Consensus       268 ---l~kme~l~L~~N~l~---------------------~vn~g~lfg--Lt~L~~L~lS~NaI~rih~d~WsftqkL~~  321 (873)
T KOG4194|consen  268 ---LEKMEHLNLETNRLQ---------------------AVNEGWLFG--LTSLEQLDLSYNAIQRIHIDSWSFTQKLKE  321 (873)
T ss_pred             ---ecccceeecccchhh---------------------hhhcccccc--cchhhhhccchhhhheeecchhhhccccee
Confidence               333344444443332                     222233333  678999999999999888999999999999


Q ss_pred             EecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChh--HhhccCCCcEEEecc
Q 001801          654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTW--IGEKFSSMVILNLRS  731 (1011)
Q Consensus       654 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~~~l~~L~~L~L~~  731 (1011)
                      |+|++|+++...++.|..+..|++|+|++|+++..--..|..+++|++|||++|.++..|.+.  .+..+++|+.|++.+
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g  401 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG  401 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence            999999999888999999999999999999999777788999999999999999999877643  345799999999999


Q ss_pred             ccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCC
Q 001801          732 NIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYP  778 (1011)
Q Consensus       732 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~  778 (1011)
                      |++...--.+|..+.+|++|||.+|.+...-|..|..+ .|.++.+.
T Consensus       402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            99997777889999999999999999998889999887 67666443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=8.3e-38  Score=320.28  Aligned_cols=478  Identities=25%  Similarity=0.386  Sum_probs=322.3

Q ss_pred             CCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcE
Q 001801          256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVH  335 (1011)
Q Consensus       256 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  335 (1011)
                      -..|+.+.+++|.+..   ....+.++..|.+|++.+|+++ ..|.+++.+..++.++.++|+++ .+|+.++.+.+|+.
T Consensus        44 qv~l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~  118 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK  118 (565)
T ss_pred             hcchhhhhhccCchhh---ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence            3456667777777654   4555666777777777777766 55666677777777777777765 56666677777777


Q ss_pred             EEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceee
Q 001801          336 ISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWD  415 (1011)
Q Consensus       336 L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~  415 (1011)
                      ++.++|.+. ..++.++.+. .++.++..+|+++ ..|..++.+.+|..+++.+|+                        
T Consensus       119 l~~s~n~~~-el~~~i~~~~-~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~------------------------  171 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLL-DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK------------------------  171 (565)
T ss_pred             hhcccccee-ecCchHHHHh-hhhhhhccccccc-cCchHHHHHHHHHHhhccccc------------------------
Confidence            777777666 3444455554 6666666666666 445566666666666666655                        


Q ss_pred             ccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeee
Q 001801          416 MTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT  495 (1011)
Q Consensus       416 L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  495 (1011)
                           +....|..+. ++.|++||...|.++ .+|+.++.+.+|+.|++..|++.. +|  .|.+|..|++++++.|++.
T Consensus       172 -----l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~g~N~i~  241 (565)
T KOG0472|consen  172 -----LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHVGENQIE  241 (565)
T ss_pred             -----hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHhcccHHH
Confidence                 4443444333 677777777777765 566667777777777777777764 33  3555555555555555443


Q ss_pred             eecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCcc
Q 001801          496 LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLS  575 (1011)
Q Consensus       496 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~  575 (1011)
                                                                       .+|+.....++++..||+.+|+++.....+.
T Consensus       242 -------------------------------------------------~lpae~~~~L~~l~vLDLRdNklke~Pde~c  272 (565)
T KOG0472|consen  242 -------------------------------------------------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC  272 (565)
T ss_pred             -------------------------------------------------hhHHHHhcccccceeeeccccccccCchHHH
Confidence                                                             4556666666777777777777774333455


Q ss_pred             ccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhc-----ccc
Q 001801          576 KATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN-----FLY  650 (1011)
Q Consensus       576 ~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-----l~~  650 (1011)
                      .+.+|..||+|+|.+++                      +|..+++  + +|+.|.+.+|.+..+-.+-+..     ++.
T Consensus       273 lLrsL~rLDlSNN~is~----------------------Lp~sLgn--l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy  327 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISS----------------------LPYSLGN--L-HLKFLALEGNPLRTIRREIISKGTQEVLKY  327 (565)
T ss_pred             HhhhhhhhcccCCcccc----------------------CCccccc--c-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence            55566666666666553                      3333333  4 6888888888775322111111     111


Q ss_pred             CcE----EecCCCcc----cccCC-c---cccCCCcccEEeCcCCcccccCCccccCCCC---CcEEEcCCCccccccCh
Q 001801          651 LRV----LNLGNNNF----TGNLP-P---SLGSLGSLTLLHLQKNSLSGRIPESLSNCNR---LVSLNMDGNQFSGDIPT  715 (1011)
Q Consensus       651 L~~----L~Ls~N~l----~~~~p-~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~ip~  715 (1011)
                      |+.    =-++.-.-    .+..| .   ....+.+.+.|++++-+++ .+|........   ....+++.|++. ++|.
T Consensus       328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk  405 (565)
T KOG0472|consen  328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK  405 (565)
T ss_pred             HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhh
Confidence            111    01111100    01111 1   1223567888999998888 66766554444   788999999997 8998


Q ss_pred             hHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccC
Q 001801          716 WIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSC  795 (1011)
Q Consensus       716 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  795 (1011)
                      .+. .+..+.+.-+.+|+..+-+|..++.+++|..|+|++|.+. .+|..++.+..|                       
T Consensus       406 ~L~-~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-----------------------  460 (565)
T KOG0472|consen  406 RLV-ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-----------------------  460 (565)
T ss_pred             hhH-HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-----------------------
Confidence            876 5666655444444444578889999999999999998887 788877766555                       


Q ss_pred             CCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCC
Q 001801          796 LPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSI  875 (1011)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  875 (1011)
                                                      +.||+|.|+|. .+|+.+..+..++.+--++|++....|+.+.+|.+|
T Consensus       461 --------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  461 --------------------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             --------------------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence                                            67999999987 889999988888888888899987777779999999


Q ss_pred             CEEeCcCCcccccCCccccCCCCCCeEEcccCccc
Q 001801          876 EVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS  910 (1011)
Q Consensus       876 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  910 (1011)
                      ..|||.+|.+. .||..+++|++|+.|++++|+|.
T Consensus       508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999997 78999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.2e-34  Score=326.68  Aligned_cols=243  Identities=28%  Similarity=0.439  Sum_probs=144.1

Q ss_pred             cCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEE
Q 001801          599 FQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLL  678 (1011)
Q Consensus       599 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  678 (1011)
                      .+++++++++|++++ +|.+++.  +.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. -+|+...++++|++|
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~--~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGA--CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHh--cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            345555555555553 4466655  567777777777774 56666666677777777777777 466666667777777


Q ss_pred             eCcCCcccccCCccc-cCCC-CCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCc
Q 001801          679 HLQKNSLSGRIPESL-SNCN-RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN  756 (1011)
Q Consensus       679 ~L~~N~l~~~~p~~l-~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  756 (1011)
                      +|..|++. ..|+.+ .-.. +|..|+.+.|++. ..|..-....+.|+.|.+.+|.++...-..+.+...|+.|+|++|
T Consensus       316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             eehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence            77777776 344322 2222 2566666666665 444333334566666666666666665556666666667777766


Q ss_pred             cccccccc-cccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCC
Q 001801          757 NLSGAIPK-CISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKN  835 (1011)
Q Consensus       757 ~l~~~~p~-~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N  835 (1011)
                      ++. .+|. .+.++..|                                                       +.|+||+|
T Consensus       394 rL~-~fpas~~~kle~L-------------------------------------------------------eeL~LSGN  417 (1081)
T KOG0618|consen  394 RLN-SFPASKLRKLEEL-------------------------------------------------------EELNLSGN  417 (1081)
T ss_pred             ccc-cCCHHHHhchHHh-------------------------------------------------------HHHhcccc
Confidence            665 3333 34443333                                                       44566666


Q ss_pred             cceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccC-CccccCCCCCCeEEcccCc
Q 001801          836 NFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI-PRSVSNLTFLNLLNLSYNY  908 (1011)
Q Consensus       836 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~  908 (1011)
                      .++ .+|..+..+..|++|..-+|++. ..| ++.++++|+.+|+|.|+|+... |... .-++|++||+|+|.
T Consensus       418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            665 55566666666666666666665 444 5666666666666666665432 2222 22556666666664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-33  Score=318.03  Aligned_cols=480  Identities=28%  Similarity=0.363  Sum_probs=261.4

Q ss_pred             eeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCC
Q 001801          163 LNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSG  242 (1011)
Q Consensus       163 L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~  242 (1011)
                      +|++.+++. .+|..+-+-..+++|+++.|.....+ .++..+                          .-+|+.|++++
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~--------------------------~v~L~~l~lsn   54 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP-LEFVEK--------------------------RVKLKSLDLSN   54 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCc-hHHhhh--------------------------eeeeEEeeccc
Confidence            455555555 56655555555666666666432222 222222                          22244444444


Q ss_pred             CCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCC
Q 001801          243 CQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSS  322 (1011)
Q Consensus       243 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  322 (1011)
                      |++... |..+..+.+|+.|+++.|.+..   .|.....+.+|++|.|.+|.+. ..|..+..+++|++|++++|++. .
T Consensus        55 n~~~~f-p~~it~l~~L~~ln~s~n~i~~---vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~  128 (1081)
T KOG0618|consen   55 NQISSF-PIQITLLSHLRQLNLSRNYIRS---VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-P  128 (1081)
T ss_pred             cccccC-CchhhhHHHHhhcccchhhHhh---Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-C
Confidence            444332 4455555666666666666554   5555666666666666666555 55555666666666666666654 4


Q ss_pred             cchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhh
Q 001801          323 IPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDI  402 (1011)
Q Consensus       323 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~  402 (1011)
                      +|..+..+..++.+..++|...    ..++..  .++.+++..|.+.+.++..+..++.                     
T Consensus       129 ~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~--~ik~~~l~~n~l~~~~~~~i~~l~~---------------------  181 (1081)
T KOG0618|consen  129 IPLVIEVLTAEEELAASNNEKI----QRLGQT--SIKKLDLRLNVLGGSFLIDIYNLTH---------------------  181 (1081)
T ss_pred             CchhHHhhhHHHHHhhhcchhh----hhhccc--cchhhhhhhhhcccchhcchhhhhe---------------------
Confidence            5555555555555555555111    011111  2334444444444333333333332                     


Q ss_pred             hcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCC
Q 001801          403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLS  482 (1011)
Q Consensus       403 ~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  482 (1011)
                                                        .|+|.+|.+. .  ..+..+.+|+.|....|++...     --.-+
T Consensus       182 ----------------------------------~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l-----~~~g~  219 (1081)
T KOG0618|consen  182 ----------------------------------QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL-----EISGP  219 (1081)
T ss_pred             ----------------------------------eeecccchhh-h--hhhhhccchhhhhhhhcccceE-----EecCc
Confidence                                              3444444443 1  1234444555555555554431     12234


Q ss_pred             CccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCccccccc
Q 001801          483 KLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNF  562 (1011)
Q Consensus       483 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l  562 (1011)
                      +|+.|+.++|.++.. .. -....+++.++++.+++.. +|.|+..+.+|+.+++.+|++ ..+|..++. ..+|+.|.+
T Consensus       220 ~l~~L~a~~n~l~~~-~~-~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~-~~~L~~l~~  294 (1081)
T KOG0618|consen  220 SLTALYADHNPLTTL-DV-HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLRISR-ITSLVSLSA  294 (1081)
T ss_pred             chheeeeccCcceee-cc-ccccccceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHHHhh-hhhHHHHHh
Confidence            555555555555411 11 1123456666666666653 448888888888888888888 355555543 468899999


Q ss_pred             ccccccccCCCccccCCCcEEEccCcccCccCCCcc----cCCceeecccccCCCCCChhhccCCCCcccEEeecccccc
Q 001801          563 SNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLIS----FQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS  638 (1011)
Q Consensus       563 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~----~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  638 (1011)
                      .+|.+.-..|......+|++|++..|++....+..+    ..+..+..+.|.+....  ......++.|+.|++.+|.++
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCccc
Confidence            999998766667778889999999998863333221    22444555555544221  112222445666666666666


Q ss_pred             ccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHh
Q 001801          639 GEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIG  718 (1011)
Q Consensus       639 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  718 (1011)
                      ...-+.+.+..+|+.|+|++|++.......+.+++.|+.|+|++|+++ .+|..+.++..|++|...+|++. .+| .+.
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~  449 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA  449 (1081)
T ss_pred             ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence            655555666666666666666666322234556666666666666665 55666666666666666666665 555 333


Q ss_pred             hccCCCcEEEecccccccc-CCccccCCCCCcEEEccCcc
Q 001801          719 EKFSSMVILNLRSNIFDGQ-FPTELCFLTSLQILDLGYNN  757 (1011)
Q Consensus       719 ~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~  757 (1011)
                       .++.|+.+|++.|.++.. +|... .-++|++||+++|.
T Consensus       450 -~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  450 -QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             -hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence             466666666666666532 22222 12566666666664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.4e-32  Score=292.25  Aligned_cols=254  Identities=24%  Similarity=0.427  Sum_probs=149.2

Q ss_pred             cCCCCCCEEECCCCCCCCC-CCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCC
Q 001801          131 LHFQHLNYLDLSGNSFGGG-IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLL  209 (1011)
Q Consensus       131 ~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L  209 (1011)
                      +-++..|-.|+++|.|+|. .|..+..+++++.|.|....+. .+|..++.|.+|++|.+++|+...+.           
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-----------   71 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-----------   71 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-----------
Confidence            3467788899999999865 8999999999999999998887 78988888888888888877432211           


Q ss_pred             cEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEE
Q 001801          210 QHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLD  289 (1011)
Q Consensus       210 ~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~  289 (1011)
                                       ..+..++.||.+.++.                        |++... .+|..+..+..|+.||
T Consensus        72 -----------------GELs~Lp~LRsv~~R~------------------------N~LKns-GiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   72 -----------------GELSDLPRLRSVIVRD------------------------NNLKNS-GIPTDIFRLKDLTILD  109 (1255)
T ss_pred             -----------------hhhccchhhHHHhhhc------------------------cccccC-CCCchhcccccceeee
Confidence                             1223333344444443                        333221 1455555555555555


Q ss_pred             ccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCc
Q 001801          290 LGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE  369 (1011)
Q Consensus       290 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~  369 (1011)
                      |++|++. ..|..+..-+++-+|+||+|+|..+....|.+++.|-.|||++|++. .+|..+..+. .|++|+|++|.+.
T Consensus       110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLN  186 (1255)
T ss_pred             cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhhhhcCCChhh
Confidence            5555555 45555555555555555555555322233445555556666666554 3344445554 5666666666554


Q ss_pred             CCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcC
Q 001801          370 GQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLI  449 (1011)
Q Consensus       370 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  449 (1011)
                      ...-..+..+++|++|.+++.+-                            -...+|..+..+.+|..+|+|.|++. .+
T Consensus       187 hfQLrQLPsmtsL~vLhms~TqR----------------------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHMSNTQR----------------------------TLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             HHHHhcCccchhhhhhhcccccc----------------------------hhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            33223333455555555555441                            12345555556666666666666665 45


Q ss_pred             cccccCCCcCcEEEeecCccc
Q 001801          450 PSSLGGLSSLERVVLSNNTLK  470 (1011)
Q Consensus       450 p~~l~~l~~L~~L~L~~n~l~  470 (1011)
                      |+.+-.+++|+.|+|++|+|+
T Consensus       238 Pecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee
Confidence            555555555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.7e-31  Score=286.97  Aligned_cols=281  Identities=28%  Similarity=0.457  Sum_probs=169.0

Q ss_pred             ccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccCccCCCcccCCceee
Q 001801          526 LLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESID  605 (1011)
Q Consensus       526 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~  605 (1011)
                      +....++-.|++++|+| +++|..++..+..|-+||+++|++....|.+..+..|++|++++|.+.      ..+|+.  
T Consensus       122 LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~------hfQLrQ--  192 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN------HFQLRQ--  192 (1255)
T ss_pred             hhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh------HHHHhc--
Confidence            33334444455555554 356666677777788888888888766666666666666666666543      011110  


Q ss_pred             cccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCccc-ccCCccccCCCcccEEeCcCCc
Q 001801          606 LSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT-GNLPPSLGSLGSLTLLHLQKNS  684 (1011)
Q Consensus       606 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~  684 (1011)
                               +|.      +++|++|.+++.                        +-+ ..+|.++..+.+|..+|++.|.
T Consensus       193 ---------LPs------mtsL~vLhms~T------------------------qRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  193 ---------LPS------MTSLSVLHMSNT------------------------QRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             ---------Ccc------chhhhhhhcccc------------------------cchhhcCCCchhhhhhhhhccccccC
Confidence                     010      334444444443                        322 1245555555555555555555


Q ss_pred             ccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccc-ccc
Q 001801          685 LSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG-AIP  763 (1011)
Q Consensus       685 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p  763 (1011)
                      +. .+|+.+.++++|+.|+||+|+++ .+....+ .-.+|++|++++|+++ .+|..++.++.|+.|++.+|+++- .||
T Consensus       234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP  309 (1255)
T KOG0444|consen  234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP  309 (1255)
T ss_pred             CC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence            54 45555555555555555555554 3333333 3455666666666666 566666777777777777776542 466


Q ss_pred             ccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCch
Q 001801          764 KCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPV  843 (1011)
Q Consensus       764 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~  843 (1011)
                      ..++.+.+|.                                                       .+..++|.+. ..|+
T Consensus       310 SGIGKL~~Le-------------------------------------------------------vf~aanN~LE-lVPE  333 (1255)
T KOG0444|consen  310 SGIGKLIQLE-------------------------------------------------------VFHAANNKLE-LVPE  333 (1255)
T ss_pred             cchhhhhhhH-------------------------------------------------------HHHhhccccc-cCch
Confidence            6676666653                                                       2344555554 6788


Q ss_pred             hccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc---C--cccccCCC
Q 001801          844 EVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY---N--YLSGEIPT  915 (1011)
Q Consensus       844 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~---N--~l~g~iP~  915 (1011)
                      .+..+..|+.|.|++|++. ..|+.+.-|+.|+.|||..|.=--..|.-=..-++|+.-|+.+   +  .+.|..|.
T Consensus       334 glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  334 GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence            8888999999999999988 8899999999999999998864433443322335666655543   2  46776664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-24  Score=223.91  Aligned_cols=428  Identities=24%  Similarity=0.280  Sum_probs=237.0

Q ss_pred             hccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCC
Q 001801          355 SASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKS  434 (1011)
Q Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~  434 (1011)
                      |+.-..++|..|+|+...|.+|+.+++|+.|+|++|.                             ++..-|.+|..+++
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-----------------------------Is~I~p~AF~GL~~  116 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-----------------------------ISFIAPDAFKGLAS  116 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccc-----------------------------hhhcChHhhhhhHh
Confidence            3455566666666665555566666666666666666                             44445555555555


Q ss_pred             CCEEEccC-CcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeec
Q 001801          435 LDSLFLSH-NSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL  513 (1011)
Q Consensus       435 L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  513 (1011)
                      +.+|-+.+ |+|+......|+++.+|+.|.+.-|++.. ++...+..+++|..|.+.+|.+..+....|..+..++.+.+
T Consensus       117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl  195 (498)
T KOG4237|consen  117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL  195 (498)
T ss_pred             hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence            55555444 66665555567777777777777777765 33346777777777777777777776667777777777777


Q ss_pred             ccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccCcc
Q 001801          514 QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT  593 (1011)
Q Consensus       514 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~  593 (1011)
                      ..|.+..     ..+++.+... +..+.+       .+.+..-..-..+.+.++..+-+.-... +++.+          
T Consensus       196 A~np~ic-----dCnL~wla~~-~a~~~i-------etsgarc~~p~rl~~~Ri~q~~a~kf~c-~~esl----------  251 (498)
T KOG4237|consen  196 AQNPFIC-----DCNLPWLADD-LAMNPI-------ETSGARCVSPYRLYYKRINQEDARKFLC-SLESL----------  251 (498)
T ss_pred             hcCcccc-----ccccchhhhH-Hhhchh-------hcccceecchHHHHHHHhcccchhhhhh-hHHhH----------
Confidence            6665310     0000000000 000000       0001111111222222222111110000 00000          


Q ss_pred             CCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCC
Q 001801          594 LPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG  673 (1011)
Q Consensus       594 ~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  673 (1011)
                              .. .++.+.+...+-+..+...+++|+.|++++|+++++-+.+|.+...+++|.|..|++...-...|.++.
T Consensus       252 --------~s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls  322 (498)
T KOG4237|consen  252 --------PS-RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS  322 (498)
T ss_pred             --------HH-hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc
Confidence                    00 011111111122223334477888888888888888888888888888888888888766666788888


Q ss_pred             cccEEeCcCCcccccCCccccCCCCCcEEEcCCCcccccc-ChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEE
Q 001801          674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI-PTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILD  752 (1011)
Q Consensus       674 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  752 (1011)
                      .|+.|+|.+|+|+...|..|..+.+|.+|+|-.|++...- -.|+++.+        +.+.-.|..|-  +.-..++.++
T Consensus       323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl--------r~~~~~~~~~C--q~p~~~~~~~  392 (498)
T KOG4237|consen  323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL--------RKKSVVGNPRC--QSPGFVRQIP  392 (498)
T ss_pred             cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH--------hhCCCCCCCCC--CCCchhcccc
Confidence            8888888888888888888888888888888887765221 12333222        12222222221  1223455566


Q ss_pred             ccCccccc---cccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEE
Q 001801          753 LGYNNLSG---AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL  829 (1011)
Q Consensus       753 Ls~N~l~~---~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  829 (1011)
                      ++++.+..   .-|+..+                     +....-|++......                        +.
T Consensus       393 ~~dv~~~~~~c~~~ee~~---------------------~~~s~~cP~~c~c~~------------------------tV  427 (498)
T KOG4237|consen  393 ISDVAFGDFRCGGPEELG---------------------CLTSSPCPPPCTCLD------------------------TV  427 (498)
T ss_pred             chhccccccccCCccccC---------------------CCCCCCCCCCcchhh------------------------hh
Confidence            66554431   1121111                     111111222211111                        12


Q ss_pred             EEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccC
Q 001801          830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYN  907 (1011)
Q Consensus       830 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  907 (1011)
                      ..-|++.+. .+|..+-  .....|++.+|.++ .+|.+  .+.+| .+|+|+|+++..--..|.+|++|.+|-+|||
T Consensus       428 vRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  428 VRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             Hhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            223333332 3333221  13445889999998 77776  67788 8999999999888889999999999999997

>PLN03210 Resistant to P

Probab=99.87  E-value=4.2e-21  Score=245.14  Aligned_cols=127  Identities=24%  Similarity=0.314  Sum_probs=88.3

Q ss_pred             CcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEc
Q 001801          625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM  704 (1011)
Q Consensus       625 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  704 (1011)
                      ++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..   .++|++|+|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            467777777776666777777777777777777776555666655 5777777777777654455543   356777777


Q ss_pred             CCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCcc
Q 001801          705 DGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN  757 (1011)
Q Consensus       705 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  757 (1011)
                      ++|.+. .+|.++. .+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus       854 s~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            777776 6777776 67777777777754444566677777777777777774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=5.4e-24  Score=219.24  Aligned_cols=278  Identities=22%  Similarity=0.223  Sum_probs=193.1

Q ss_pred             CCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccC-CCCcccCcccccCCCCCCEE
Q 001801          234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGS-NDFQGSIPVGLQNLTSLRHL  312 (1011)
Q Consensus       234 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L  312 (1011)
                      .-.+++|..|+|+.+.+.+|..+++|+.|||++|.|+..  .|.+|.+++.|.+|-+.+ |+|+......|+++..|+.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            456677778888888788888888888888888888765  777788887777776665 77776666677778888888


Q ss_pred             eCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCc------------CCCchhccCCC
Q 001801          313 DLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE------------GQIPRSFGRLC  380 (1011)
Q Consensus       313 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~------------~~~p~~l~~l~  380 (1011)
                      .+.-|++.....+.|..+++|..|.+.+|.+...--..+..+. .++.+.+..|.+-            ...|..++..+
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-ccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            8887887777777777888888888877777644444566665 6777777776622            11222233333


Q ss_pred             CCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCc-ccccCCCCCCEEEccCCcCCCcCcccccCCCcC
Q 001801          381 NLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLT-SQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSL  459 (1011)
Q Consensus       381 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  459 (1011)
                      ...-..+.+.++.+.-..-+.    +....+.+--.+.|...+..| ..|..+++|+.|++++|+++++-+.+|.+...+
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~----c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFL----CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             ecchHHHHHHHhcccchhhhh----hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence            333233333322221111110    000111111122333333333 458889999999999999999999999999999


Q ss_pred             cEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCC
Q 001801          460 ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG  519 (1011)
Q Consensus       460 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  519 (1011)
                      ++|.|..|++.. +....|.++..|+.|+|++|+|+...+.+|.....|.+|++-.|.+.
T Consensus       301 ~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  301 QELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            999999999985 55558999999999999999999999999999999999998887653

>PLN03210 Resistant to P

Probab=99.86  E-value=1.3e-20  Score=240.76  Aligned_cols=305  Identities=23%  Similarity=0.238  Sum_probs=149.8

Q ss_pred             ccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEcc
Q 001801          507 QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLS  586 (1011)
Q Consensus       507 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls  586 (1011)
                      +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+.. ++..+ ..+++|+.|+++++...+.+|.+..+++|++|+++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-ccccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence            3555555555443 334333 34566666666666543 22222 34567777777776655666766666777777777


Q ss_pred             CcccCccCCCc---ccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccc
Q 001801          587 SNNLSGTLPLI---SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTG  663 (1011)
Q Consensus       587 ~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  663 (1011)
                      +|.....+|..   +.+|+.|++++|...+.+|..+   .+++|+.|++++|...+.+|..   ..+|++|++++|.+. 
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-  738 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-  738 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence            76655555543   2345555555544444444332   1344555555555443333322   234455555555544 


Q ss_pred             cCCccccCCCcccEEeCcCCccc-------ccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccc
Q 001801          664 NLPPSLGSLGSLTLLHLQKNSLS-------GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDG  736 (1011)
Q Consensus       664 ~~p~~l~~l~~L~~L~L~~N~l~-------~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~  736 (1011)
                      .+|..+ .+++|+.|++.++...       ...|......++|+.|++++|...+.+|.++. ++++|+.|++++|...+
T Consensus       739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~  816 (1153)
T PLN03210        739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLE  816 (1153)
T ss_pred             cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcC
Confidence            334333 2444444444442211       00111111223444444444444444444443 44444444444443333


Q ss_pred             cCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCc
Q 001801          737 QFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK  816 (1011)
Q Consensus       737 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  816 (1011)
                      .+|..+ ++++|+.|++++|.....+|..                                                   
T Consensus       817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---------------------------------------------------  844 (1153)
T PLN03210        817 TLPTGI-NLESLESLDLSGCSRLRTFPDI---------------------------------------------------  844 (1153)
T ss_pred             eeCCCC-CccccCEEECCCCCcccccccc---------------------------------------------------
Confidence            344333 3444444444444322222211                                                   


Q ss_pred             chhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCc
Q 001801          817 ELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQ  884 (1011)
Q Consensus       817 ~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~  884 (1011)
                             ...++.|+|++|.++ .+|..+..+++|+.|+|++|+--..+|..+..+++|+.+++++|.
T Consensus       845 -------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 -------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             -------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                   112345666666665 456666666666666666633222456566666666666666664

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.9e-21  Score=227.67  Aligned_cols=259  Identities=25%  Similarity=0.324  Sum_probs=154.9

Q ss_pred             cccccccccccccCCC-ccccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeecccc
Q 001801          558 YFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS  636 (1011)
Q Consensus       558 ~~L~ls~n~l~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  636 (1011)
                      ..|+++++.++ .+|. +.  ++++.|++++|+++. +|..+++|++|++++|.++. +|..     .++|+.|++++|.
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-----p~sL~~L~Ls~N~  273 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-----PPGLLELSIFSNP  273 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-----ccccceeeccCCc
Confidence            34455555554 2332 21  345555666555553 44445556666666666553 3321     2456666666666


Q ss_pred             ccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChh
Q 001801          637 FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTW  716 (1011)
Q Consensus       637 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  716 (1011)
                      ++ .+|..+   .+|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.++ .+|..
T Consensus       274 L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l  340 (788)
T PRK15387        274 LT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL  340 (788)
T ss_pred             hh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc
Confidence            65 233322   35666777777766 34432   3567777777777664 3432   134666677777775 45531


Q ss_pred             HhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCC
Q 001801          717 IGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCL  796 (1011)
Q Consensus       717 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  796 (1011)
                          ..+|+.|+|++|++++ +|..   .++|+.|++++|.+++ +|...   .                          
T Consensus       341 ----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~--------------------------  382 (788)
T PRK15387        341 ----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---S--------------------------  382 (788)
T ss_pred             ----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---c--------------------------
Confidence                2467777777777764 4432   2456667777777662 44311   1                          


Q ss_pred             CCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCC
Q 001801          797 PRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIE  876 (1011)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~  876 (1011)
                                                   .|+.|||++|+|++ +|...   ++|+.|++++|+|++ +|...   .+|+
T Consensus       383 -----------------------------~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~  425 (788)
T PRK15387        383 -----------------------------GLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLL  425 (788)
T ss_pred             -----------------------------ccceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhh
Confidence                                         12567788888774 55432   467788888888874 66533   4567


Q ss_pred             EEeCcCCcccccCCccccCCCCCCeEEcccCcccccCCC
Q 001801          877 VIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPT  915 (1011)
Q Consensus       877 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  915 (1011)
                      .|++++|+|+ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus       426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            7888888887 6788888888888888888888887765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.5e-21  Score=228.22  Aligned_cols=267  Identities=24%  Similarity=0.370  Sum_probs=195.7

Q ss_pred             CCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccCccCCCcccCCceeecccccC
Q 001801          532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAF  611 (1011)
Q Consensus       532 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l  611 (1011)
                      -..|+++++.++ .+|..+.   ++|+.|++.+|+++. +|..  +++|++|++++|+++ .+|..+++|+.|++++|.+
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccC-cccCcccccceeeccCCch
Confidence            445666666665 3454442   356677777777663 4443  467888888888887 4566677888888888887


Q ss_pred             CCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCc
Q 001801          612 SGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPE  691 (1011)
Q Consensus       612 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  691 (1011)
                      .. +|..     .++|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++++ +|.
T Consensus       275 ~~-Lp~l-----p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~  339 (788)
T PRK15387        275 TH-LPAL-----PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT  339 (788)
T ss_pred             hh-hhhc-----hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence            63 3332     3568889999998874 4542   4679999999999985 4542   2467888999999874 564


Q ss_pred             cccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCcccccccccccccccc
Q 001801          692 SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA  771 (1011)
Q Consensus       692 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  771 (1011)
                      .   ..+|++|+|++|+++ .+|..    ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|...   +.
T Consensus       340 l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s~  403 (788)
T PRK15387        340 L---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---SE  403 (788)
T ss_pred             c---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---cC
Confidence            2   257899999999998 57752    4678889999999984 6654   3578999999999984 55321   11


Q ss_pred             CccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccC
Q 001801          772 MVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVAL  851 (1011)
Q Consensus       772 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L  851 (1011)
                                                                             |+.||+|+|+|++ +|...   .+|
T Consensus       404 -------------------------------------------------------L~~LdLS~N~Lss-IP~l~---~~L  424 (788)
T PRK15387        404 -------------------------------------------------------LKELMVSGNRLTS-LPMLP---SGL  424 (788)
T ss_pred             -------------------------------------------------------CCEEEccCCcCCC-CCcch---hhh
Confidence                                                                   2578999999985 67543   467


Q ss_pred             ceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCC
Q 001801          852 RSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLT  897 (1011)
Q Consensus       852 ~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~  897 (1011)
                      +.|+|++|+|+ .+|..++++++|+.|+|++|.|+|.+|..+..++
T Consensus       425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            88999999998 7899999999999999999999999998875544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=3.4e-19  Score=212.02  Aligned_cols=118  Identities=29%  Similarity=0.451  Sum_probs=53.3

Q ss_pred             cccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcC
Q 001801          626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMD  705 (1011)
Q Consensus       626 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  705 (1011)
                      +|+.|++++|+++ .+|..+.  .+|+.|+|++|++. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence            4455555555544 2333322  24555555555554 3444332  24555555555554 2344332  345555555


Q ss_pred             CCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCcccc
Q 001801          706 GNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS  759 (1011)
Q Consensus       706 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  759 (1011)
                      +|+++ .+|..+.   ++|+.|++++|.++. +|..+.  ++|+.|++++|.++
T Consensus       292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT  338 (754)
T ss_pred             CCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCccc
Confidence            55554 3443321   244555555555542 333221  34555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=3.1e-19  Score=212.43  Aligned_cols=246  Identities=24%  Similarity=0.402  Sum_probs=159.8

Q ss_pred             CCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecC
Q 001801          578 TGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLG  657 (1011)
Q Consensus       578 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  657 (1011)
                      +.++.|++++|+++...+....+|+.|++++|.++ .+|..+    .++|+.|++++|++. .+|..+.  .+|+.|+++
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l----~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATL----PDTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhh----hccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            34555666666555332233446666666666665 344433    236778888888877 5566554  468888888


Q ss_pred             CCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEecccccccc
Q 001801          658 NNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQ  737 (1011)
Q Consensus       658 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~  737 (1011)
                      +|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ 
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-  339 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-  339 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-
Confidence            88887 4666553  478888888888873 555443  46888888888887 567654   3678888888888875 


Q ss_pred             CCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcc
Q 001801          738 FPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE  817 (1011)
Q Consensus       738 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  817 (1011)
                      +|..+.  ++|+.|++++|+++ .+|..+.  +                                               
T Consensus       340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~-----------------------------------------------  367 (754)
T PRK15370        340 LPASLP--PELQVLDVSKNQIT-VLPETLP--P-----------------------------------------------  367 (754)
T ss_pred             CChhhc--CcccEEECCCCCCC-cCChhhc--C-----------------------------------------------
Confidence            666553  68888888888886 4554321  1                                               


Q ss_pred             hhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccc----cCCCCCCEEeCcCCcccccCCccc
Q 001801          818 LEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSI----GAMKSIEVIDFSNNQLSEEIPRSV  893 (1011)
Q Consensus       818 ~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l----~~L~~L~~L~Ls~N~l~~~ip~~l  893 (1011)
                              .|+.|||++|+|+ .+|..+.  ..|+.|++++|+|+ .+|..+    +.++.+..|++.+|.++.   ..+
T Consensus       368 --------~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl  432 (754)
T PRK15370        368 --------TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTI  432 (754)
T ss_pred             --------CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHH
Confidence                    1256888888887 4566554  36888888888887 455443    445777888888888873   233


Q ss_pred             cCCCCCCeEEcccCcccccC
Q 001801          894 SNLTFLNLLNLSYNYLSGEI  913 (1011)
Q Consensus       894 ~~l~~L~~L~ls~N~l~g~i  913 (1011)
                         ..|+.+ ++.+.+.|++
T Consensus       433 ---~~L~~L-l~s~~~~gp~  448 (754)
T PRK15370        433 ---QNMQRL-MSSVGYQGPR  448 (754)
T ss_pred             ---HHHHHh-hhcccccCCc
Confidence               333333 4455555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=2.4e-17  Score=183.40  Aligned_cols=166  Identities=22%  Similarity=0.298  Sum_probs=94.7

Q ss_pred             CCCCEEEcCCCCCCCC----CCCCCCCC-CCccEEECCCCCCCCC--hhhhHhhhCCCCCcEEEccCCCCccc----Ccc
Q 001801          233 SSLRVLRLSGCQLDHF----HPPPIVNI-SSISVLDLSSNQFDQN--SLVLSWVFGLSNLVYLDLGSNDFQGS----IPV  301 (1011)
Q Consensus       233 ~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~  301 (1011)
                      ++|++|++++|++++.    ....+..+ ++|+.|++++|.+++.  ..++..+..+++|++|++++|.+++.    ++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            3366666666655531    11223344 5666666666666532  11344555666777777777776642    233


Q ss_pred             cccCCCCCCEEeCCCCCCCCC----cchhccCCCCCcEEEccCCCCCCchhhHHHhh----hccccEEecccCcCcC---
Q 001801          302 GLQNLTSLRHLDLSYNDFNSS----IPNWLASFSNLVHISLRSNSLQGSITGFLANL----SASIEVLDLSSQQLEG---  370 (1011)
Q Consensus       302 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l----~~~L~~L~Ls~n~l~~---  370 (1011)
                      .+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+...    .+.|++|++++|.++.   
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence            445556777777777776543    23344566777777777777765333333322    1267777777776652   


Q ss_pred             -CCchhccCCCCCCEEEccCccCCcchhH
Q 001801          371 -QIPRSFGRLCNLREISLSDVKMSQDISE  398 (1011)
Q Consensus       371 -~~p~~l~~l~~L~~L~L~~n~~~~~~~~  398 (1011)
                       .+...+..+++|+++++++|.+......
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence             2233445556777777777776544333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=2.9e-17  Score=182.74  Aligned_cols=60  Identities=30%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             CCCCEEEccCCcCCC----cCcccccCCCcCcEEEeecCccccc----cChhhhcCC-CCccEEEccCCe
Q 001801          433 KSLDSLFLSHNSISG----LIPSSLGGLSSLERVVLSNNTLKGY----LSEIHLANL-SKLVSFDVSGNA  493 (1011)
Q Consensus       433 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l-~~L~~L~L~~n~  493 (1011)
                      +.|++|++++|.+++    .+...+..+++|+++++++|.+...    +.. .+... +.|+++++.+|+
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE-SLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH-HHhhcCCchhhcccCCCC
Confidence            556666666666652    1223344556677777777766643    222 12222 567777776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=4.5e-18  Score=155.68  Aligned_cols=81  Identities=25%  Similarity=0.474  Sum_probs=43.6

Q ss_pred             EEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCC---CCeEEccc
Q 001801          830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTF---LNLLNLSY  906 (1011)
Q Consensus       830 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~---L~~L~ls~  906 (1011)
                      |+|++|.|. .+|.+++++++|+.|.+..|.+- ..|.+++.|++|++|.+.+|+++ .+|..++++.-   =+.+.+.+
T Consensus       132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~  208 (264)
T KOG0617|consen  132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEE  208 (264)
T ss_pred             HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhh
Confidence            344444443 45555566666666666666655 55666666666666666666665 44444444432   12334455


Q ss_pred             CcccccC
Q 001801          907 NYLSGEI  913 (1011)
Q Consensus       907 N~l~g~i  913 (1011)
                      |+..-+|
T Consensus       209 NPwv~pI  215 (264)
T KOG0617|consen  209 NPWVNPI  215 (264)
T ss_pred             CCCCChH
Confidence            6655444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=6.7e-18  Score=154.54  Aligned_cols=119  Identities=28%  Similarity=0.543  Sum_probs=55.6

Q ss_pred             cccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEE
Q 001801          648 FLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL  727 (1011)
Q Consensus       648 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  727 (1011)
                      +...+.|.|++|+++ .+|+.++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..++ .++.|++|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence            344445555555555 34445555555555555555554 44555555555555555555544 4444444 34444444


Q ss_pred             Eecccccc-ccCCccccCCCCCcEEEccCcccccccccccccccc
Q 001801          728 NLRSNIFD-GQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA  771 (1011)
Q Consensus       728 ~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  771 (1011)
                      ||.+|.+. ..+|..|..++.|+.|+|++|.|. .+|..++++++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~  151 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN  151 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence            44444443 223444444444444444444443 33333333333

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.3e-14  Score=172.92  Aligned_cols=116  Identities=39%  Similarity=0.623  Sum_probs=103.1

Q ss_pred             eEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc
Q 001801          827 VALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY  906 (1011)
Q Consensus       827 l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  906 (1011)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.||+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCcc--cCccCccccCCC-CCCCCCCCCCCC
Q 001801          907 NYLSGEIPTSTQ--LQSFDASCFIGN-DLCGSPLSRNCT  942 (1011)
Q Consensus       907 N~l~g~iP~~~~--~~~~~~~~~~~n-~lcg~~~~~~c~  942 (1011)
                      |+++|.+|..-.  +.......+.+| .+||.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999997521  122234457889 899977555674

>PLN03150 hypothetical protein; Provisional

Probab=99.43  E-value=4.7e-13  Score=159.74  Aligned_cols=127  Identities=39%  Similarity=0.625  Sum_probs=110.2

Q ss_pred             CCCHHHHHHHHhhhccCCCCCCCccCCCCCCCCCCCc----cceeeEecC--CCC--ceEEEEcCCCCCCCCCCCCCCcc
Q 001801           31 HCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCC----KWSGVVCDN--FTG--HVLELRLGNPLNHPISYHTSPAQ  102 (1011)
Q Consensus        31 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~~--~v~~l~l~~~~~~~~~~~~~~~~  102 (1011)
                      .+.++|.+||+++|+++.+|..  .+|.    +..||    .|.||.|..  ..+  +|+.|+|+++             
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-------------  428 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-------------  428 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCCC-------------
Confidence            3577899999999999876532  4896    44553    799999952  222  5899999884             


Q ss_pred             hhhhhhcccchhhhhccccCCccccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCC
Q 001801          103 YSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLS  182 (1011)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~  182 (1011)
                                        .+.|.+|+.++++++|++|+|++|.+.|.+|..++.+++|++|+|++|.+++.+|..+++++
T Consensus       429 ------------------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        429 ------------------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             ------------------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence                              78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeCCCCCC
Q 001801          183 KLQYLDLVENSE  194 (1011)
Q Consensus       183 ~L~~L~L~~n~~  194 (1011)
                      +|++|+|++|.+
T Consensus       491 ~L~~L~Ls~N~l  502 (623)
T PLN03150        491 SLRILNLNGNSL  502 (623)
T ss_pred             CCCEEECcCCcc
Confidence            999999999853

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=5.8e-13  Score=144.59  Aligned_cols=194  Identities=28%  Similarity=0.474  Sum_probs=137.0

Q ss_pred             CcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEc
Q 001801          625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM  704 (1011)
Q Consensus       625 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  704 (1011)
                      ..-...|++.|++. .+|..++.+..|+.+.|..|.+- .+|..++++..|.+++|+.|+++ .+|..+..|+ |+.|-+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence            33455667777776 56777777777777777777776 66777777777777777777776 5666666655 777777


Q ss_pred             CCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCC
Q 001801          705 DGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHP  784 (1011)
Q Consensus       705 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~  784 (1011)
                      ++|+++ .+|..++ .+.+|..||.+.|.+. .+|..++++.+|+.|.++.|++. .+|+.+..|+              
T Consensus       151 sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--------------  212 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--------------  212 (722)
T ss_pred             ecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------
Confidence            777776 6777776 6777777777777776 56677777777777777777776 4555443222              


Q ss_pred             CccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCcccccc
Q 001801          785 GITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR  864 (1011)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  864 (1011)
                                                                |..||+|.|+++ .||-+|.+|+.|++|-|.+|.++ .
T Consensus       213 ------------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S  248 (722)
T KOG0532|consen  213 ------------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S  248 (722)
T ss_pred             ------------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence                                                      256888888887 78888888888888888888888 6


Q ss_pred             ccccc---cCCCCCCEEeCcCCc
Q 001801          865 IPDSI---GAMKSIEVIDFSNNQ  884 (1011)
Q Consensus       865 ip~~l---~~L~~L~~L~Ls~N~  884 (1011)
                      .|..+   |...--++|+..-++
T Consensus       249 PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  249 PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ChHHHHhccceeeeeeecchhcc
Confidence            66654   344455666666663

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=1e-12  Score=142.75  Aligned_cols=195  Identities=25%  Similarity=0.432  Sum_probs=149.9

Q ss_pred             cccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEE
Q 001801          648 FLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL  727 (1011)
Q Consensus       648 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  727 (1011)
                      +.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|+.+.++..|++|||+.|+++ .+|..++  .--|+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeE
Confidence            344566889999998 78888888899999999999998 78999999999999999999998 8888886  4568888


Q ss_pred             EeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCccc
Q 001801          728 NLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIE  807 (1011)
Q Consensus       728 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  807 (1011)
                      -+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|.                                  
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr----------------------------------  192 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLR----------------------------------  192 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHH----------------------------------
Confidence            99999888 67888888888888888888887 6777777776663                                  


Q ss_pred             ceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccc
Q 001801          808 KAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE  887 (1011)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~  887 (1011)
                                           .|.+..|++. ..|+++..|+ |..||+|+|+++ .||-.|.+|+.|++|-|.+|.|. 
T Consensus       193 ---------------------~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-  247 (722)
T KOG0532|consen  193 ---------------------DLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-  247 (722)
T ss_pred             ---------------------HHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-
Confidence                                 2445556655 4566666544 777888888887 78888888888888888888886 


Q ss_pred             cCCcccc---CCCCCCeEEcccCc
Q 001801          888 EIPRSVS---NLTFLNLLNLSYNY  908 (1011)
Q Consensus       888 ~ip~~l~---~l~~L~~L~ls~N~  908 (1011)
                      ..|..+-   ...-.++|+..-++
T Consensus       248 SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  248 SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             CChHHHHhccceeeeeeecchhcc
Confidence            3454442   23335566665554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=2.4e-11  Score=139.13  Aligned_cols=199  Identities=31%  Similarity=0.550  Sum_probs=116.3

Q ss_pred             EEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCC-cccEEeCcCCcccccCCccccCCCCCcEEEcCCC
Q 001801          629 VLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG-SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGN  707 (1011)
Q Consensus       629 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  707 (1011)
                      .+++..|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4555556553222 23344466777777777777 4555566553 7777777777776 45566677777777777777


Q ss_pred             ccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCcc
Q 001801          708 QFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT  787 (1011)
Q Consensus       708 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~  787 (1011)
                      +++ .+|...+ ..+.|+.|++++|++. .+|..+.....|+.+++++|++. .++..+.+++.+               
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------  234 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------  234 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence            776 5665543 4667777777777776 45555445555667777766532 233333333332               


Q ss_pred             CCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccc
Q 001801          788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPD  867 (1011)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  867 (1011)
                                                              ..+.+++|++. .++..++.+++++.|++++|.++ .++.
T Consensus       235 ----------------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~  272 (394)
T COG4886         235 ----------------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS  272 (394)
T ss_pred             ----------------------------------------cccccCCceee-eccchhccccccceecccccccc-cccc
Confidence                                                    22334455444 22455555566666666666666 3333


Q ss_pred             cccCCCCCCEEeCcCCcccccCCcc
Q 001801          868 SIGAMKSIEVIDFSNNQLSEEIPRS  892 (1011)
Q Consensus       868 ~l~~L~~L~~L~Ls~N~l~~~ip~~  892 (1011)
                       ++.+.+++.||+++|.++...|..
T Consensus       273 -~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         273 -LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             -ccccCccCEEeccCccccccchhh
Confidence             566666666666666666555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=3.3e-11  Score=137.95  Aligned_cols=200  Identities=33%  Similarity=0.480  Sum_probs=163.7

Q ss_pred             cEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCC-CCcEEEcCCCccccccChhHhhccCCCcEEEec
Q 001801          652 RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCN-RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR  730 (1011)
Q Consensus       652 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  730 (1011)
                      ..++++.|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..+. .+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence            46888898885333 34556688999999999998 6777777774 9999999999998 7776676 89999999999


Q ss_pred             cccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceE
Q 001801          731 SNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAF  810 (1011)
Q Consensus       731 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  810 (1011)
                      +|++. .+|...+.++.|+.|++++|++. .+|..+.....|                                      
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L--------------------------------------  211 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL--------------------------------------  211 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh--------------------------------------
Confidence            99999 56666668899999999999998 666544333333                                      


Q ss_pred             EEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCC
Q 001801          811 LVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP  890 (1011)
Q Consensus       811 ~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip  890 (1011)
                                       +.+++++|.+. .++..+..+..+..|.+++|++. .+|..++.+++++.|++++|.++...+
T Consensus       212 -----------------~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         212 -----------------EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             -----------------hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc
Confidence                             56778888543 57788899999999999999998 447788999999999999999985544


Q ss_pred             ccccCCCCCCeEEcccCcccccCCCC
Q 001801          891 RSVSNLTFLNLLNLSYNYLSGEIPTS  916 (1011)
Q Consensus       891 ~~l~~l~~L~~L~ls~N~l~g~iP~~  916 (1011)
                        ++.+..++.|++++|.++...|..
T Consensus       273 --~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         273 --LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             --ccccCccCEEeccCccccccchhh
Confidence              899999999999999999887754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=7.3e-12  Score=129.01  Aligned_cols=250  Identities=25%  Similarity=0.318  Sum_probs=142.3

Q ss_pred             ccccCCCCCCEEECCCCCCCCC----CCccccCCCCCCEeeCCCCCCCC----CCccc-------cCCCCCCCEEeCCCC
Q 001801          128 PSLLHFQHLNYLDLSGNSFGGG----IPRFLGSMGKLKYLNLSGAGFKG----MIPHQ-------LGNLSKLQYLDLVEN  192 (1011)
Q Consensus       128 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~----~~p~~-------l~~l~~L~~L~L~~n  192 (1011)
                      +.+..+..+++++||+|.|...    +...+.+.++|+..++++- ++|    .+|..       +..+++|++||||+|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            4556778999999999998533    5566777889999999863 333    34433       346678888888888


Q ss_pred             CCcCCCCC---CCCCCCCCCcEEeCCCCCCCCccc--hHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCC
Q 001801          193 SELYVDNL---SWLPGLSLLQHLDLGGVNLGKAFD--WSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSN  267 (1011)
Q Consensus       193 ~~~~~~~~---~~l~~l~~L~~L~L~~~~~~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  267 (1011)
                      .+...+..   ..+..++.|++|.|.+|.+.....  +..++.      +|.         .......-+.|+++...+|
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~------~l~---------~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALF------ELA---------VNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHH------HHH---------HHhccCCCcceEEEEeecc
Confidence            54332211   134456777777777776654421  111110      000         0011223345555555555


Q ss_pred             CCCCC--hhhhHhhhCCCCCcEEEccCCCCccc----CcccccCCCCCCEEeCCCCCCCCC----cchhccCCCCCcEEE
Q 001801          268 QFDQN--SLVLSWVFGLSNLVYLDLGSNDFQGS----IPVGLQNLTSLRHLDLSYNDFNSS----IPNWLASFSNLVHIS  337 (1011)
Q Consensus       268 ~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~  337 (1011)
                      ++...  ..+...|...+.|+.+.++.|.+...    +...+..+++|+.|||..|.++..    +...+..+++|+.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            55322  22444555566666666666655421    223456666677777766666532    233445566677777


Q ss_pred             ccCCCCCCchh----hHHHhhhccccEEecccCcCcCC----CchhccCCCCCCEEEccCccCC
Q 001801          338 LRSNSLQGSIT----GFLANLSASIEVLDLSSQQLEGQ----IPRSFGRLCNLREISLSDVKMS  393 (1011)
Q Consensus       338 L~~n~l~~~~~----~~l~~l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~  393 (1011)
                      +++|.+...-.    ..+....+.|++|.+.+|.++..    +.......+.|+.|+|++|.+.
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            77776654332    22333333677777777766532    1123445677777888877763

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1.7e-11  Score=126.28  Aligned_cols=219  Identities=22%  Similarity=0.179  Sum_probs=121.1

Q ss_pred             ccccccCCCCCCEEECCCCCCCCC----CCc-------cccCCCCCCEeeCCCCCCCCCCccc----cCCCCCCCEEeCC
Q 001801          126 INPSLLHFQHLNYLDLSGNSFGGG----IPR-------FLGSMGKLKYLNLSGAGFKGMIPHQ----LGNLSKLQYLDLV  190 (1011)
Q Consensus       126 l~~~l~~l~~L~~L~Ls~n~l~~~----~p~-------~l~~l~~L~~L~Ls~n~~~~~~p~~----l~~l~~L~~L~L~  190 (1011)
                      +.+.+.+.+.|+..++++- ++|.    +|.       .+-.+++|++||||+|.+...-+..    +..+..|++|.|.
T Consensus        50 i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~  128 (382)
T KOG1909|consen   50 IAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN  128 (382)
T ss_pred             HHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh
Confidence            4456667778888888764 2332    443       3345668888888888876544433    3567888888888


Q ss_pred             CCCCcCCCCC------------CCCCCCCCCcEEeCCCCCCCCc--cchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCC
Q 001801          191 ENSELYVDNL------------SWLPGLSLLQHLDLGGVNLGKA--FDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNI  256 (1011)
Q Consensus       191 ~n~~~~~~~~------------~~l~~l~~L~~L~L~~~~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  256 (1011)
                      +|-+.....-            ...+.-+.|+.+..+.|++.+.  ..+...+...+.|+.+.+..|.|....       
T Consensus       129 N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG-------  201 (382)
T KOG1909|consen  129 NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG-------  201 (382)
T ss_pred             cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch-------
Confidence            8854322211            1233456677777777766554  334555666666666666666554321       


Q ss_pred             CCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCccc----CcccccCCCCCCEEeCCCCCCCCCcchhc-----
Q 001801          257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGS----IPVGLQNLTSLRHLDLSYNDFNSSIPNWL-----  327 (1011)
Q Consensus       257 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----  327 (1011)
                                     .......+..+++|+.|||.+|-++..    +...+..+++|+.|++++|.+...-...+     
T Consensus       202 ---------------~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~  266 (382)
T KOG1909|consen  202 ---------------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK  266 (382)
T ss_pred             ---------------hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence                           112334445555555555555555432    22334445555566665555543222222     


Q ss_pred             cCCCCCcEEEccCCCCCCch----hhHHHhhhccccEEecccCcC
Q 001801          328 ASFSNLVHISLRSNSLQGSI----TGFLANLSASIEVLDLSSQQL  368 (1011)
Q Consensus       328 ~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~~L~~L~Ls~n~l  368 (1011)
                      ...+.|+.|.+.+|.++..-    ...+...+ .|+.|+|++|.+
T Consensus       267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~-dL~kLnLngN~l  310 (382)
T KOG1909|consen  267 ESAPSLEVLELAGNEITRDAALALAACMAEKP-DLEKLNLNGNRL  310 (382)
T ss_pred             ccCCCCceeccCcchhHHHHHHHHHHHHhcch-hhHHhcCCcccc
Confidence            13556666666666655322    12233333 677777777766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.7e-11  Score=128.11  Aligned_cols=212  Identities=22%  Similarity=0.192  Sum_probs=141.7

Q ss_pred             cCCCCCCEEECCCCCCCCCC-CccccCCCCCCEeeCCCCCCCCCC--ccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCC
Q 001801          131 LHFQHLNYLDLSGNSFGGGI-PRFLGSMGKLKYLNLSGAGFKGMI--PHQLGNLSKLQYLDLVENSELYVDNLSWLPGLS  207 (1011)
Q Consensus       131 ~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~--p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~  207 (1011)
                      ++++.|+...|.++...... ......|++++.|||+.|-+..-.  -.-...+++|+.|+|+.|+......-..-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            57899999999998774321 146678999999999999887532  344577999999999999754333222233678


Q ss_pred             CCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcE
Q 001801          208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVY  287 (1011)
Q Consensus       208 ~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  287 (1011)
                      .|+.|.++.|.++ ..++...+..+|+|+.|++..|...........-+..|+.|||++|.+.... .-...+.++.|+.
T Consensus       198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQ  275 (505)
T ss_pred             hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-cccccccccchhh
Confidence            8899999999888 5566677788899999999988644444455556778888888888876521 1244567778888


Q ss_pred             EEccCCCCccc-Cccc-----ccCCCCCCEEeCCCCCCCCC-cchhccCCCCCcEEEccCCCCC
Q 001801          288 LDLGSNDFQGS-IPVG-----LQNLTSLRHLDLSYNDFNSS-IPNWLASFSNLVHISLRSNSLQ  344 (1011)
Q Consensus       288 L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~  344 (1011)
                      |+++.+.+... .|+.     ...+++|++|++..|++... .-..+..+++|+.|.+..|.++
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            88887777643 2222     24556677777766666421 1122333444555554444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.4e-10  Score=122.75  Aligned_cols=111  Identities=25%  Similarity=0.260  Sum_probs=58.9

Q ss_pred             CCCCCCEEEcCCCCCCCCCC-CCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccc-cCCCC
Q 001801          231 SLSSLRVLRLSGCQLDHFHP-PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTS  308 (1011)
Q Consensus       231 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~  308 (1011)
                      ++++|+++.|.++.+..... .....++.++.|||+.|-+.....+......+++|+.|+++.|.+........ ..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45555666666555544322 23445677777777777666544455556677777777777776653222111 13445


Q ss_pred             CCEEeCCCCCCCCC-cchhccCCCCCcEEEccCC
Q 001801          309 LRHLDLSYNDFNSS-IPNWLASFSNLVHISLRSN  341 (1011)
Q Consensus       309 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n  341 (1011)
                      |+.|.++.|.++-. +...+..+|+|+.|+|..|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            55555555555421 1112224455555555555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.4e-09  Score=132.39  Aligned_cols=254  Identities=25%  Similarity=0.283  Sum_probs=149.6

Q ss_pred             ccccc-ccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCC
Q 001801          125 KINPS-LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWL  203 (1011)
Q Consensus       125 ~l~~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l  203 (1011)
                      .++.. |..+++|++|||++|.=-+.+|..++.+-+||||+|+++.+. .+|..+++|.+|.+||+..+...... ....
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~  638 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGIL  638 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchh
Confidence            34443 567999999999998766779999999999999999999998 89999999999999999987432222 2234


Q ss_pred             CCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCcc----EEECCCCCCCCChhhhHhh
Q 001801          204 PGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSIS----VLDLSSNQFDQNSLVLSWV  279 (1011)
Q Consensus       204 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~~~l  279 (1011)
                      ..+++||+|.+..............+.++.+|+.+.......  .....+..+.+|+    .+.+.++...   ..+..+
T Consensus       639 ~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~---~~~~~~  713 (889)
T KOG4658|consen  639 LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR---TLISSL  713 (889)
T ss_pred             hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc---eeeccc
Confidence            458899999887766444333444556666666666644433  1111222333333    2222222221   145566


Q ss_pred             hCCCCCcEEEccCCCCcccCcccccC------CCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHh
Q 001801          280 FGLSNLVYLDLGSNDFQGSIPVGLQN------LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN  353 (1011)
Q Consensus       280 ~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  353 (1011)
                      ..+.+|+.|.+.++............      ++++..+...++... ..+.+....++|+.|.+..+.....+.+....
T Consensus       714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~  792 (889)
T KOG4658|consen  714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA  792 (889)
T ss_pred             ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHH
Confidence            67777777777777765322211111      122222222222211 22334445567777777777666555555555


Q ss_pred             hhccccEEecccCcCcCC-CchhccCCCCCCEEEc
Q 001801          354 LSASIEVLDLSSQQLEGQ-IPRSFGRLCNLREISL  387 (1011)
Q Consensus       354 l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L  387 (1011)
                      +. .++.+.+..+.+.+. .-...+.++++..+.+
T Consensus       793 ~~-~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l  826 (889)
T KOG4658|consen  793 LL-ELKELILPFNKLEGLRMLCSLGGLPQLYWLPL  826 (889)
T ss_pred             hh-hcccEEecccccccceeeecCCCCceeEeccc
Confidence            44 555555555555544 2334444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=5.4e-09  Score=101.97  Aligned_cols=126  Identities=27%  Similarity=0.368  Sum_probs=45.3

Q ss_pred             hccccCcEEecCCCcccccCCcccc-CCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCC
Q 001801          646 MNFLYLRVLNLGNNNFTGNLPPSLG-SLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSM  724 (1011)
Q Consensus       646 ~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  724 (1011)
                      .+..++++|+|++|.++. + +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+++ .++..+...+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            344467777777777773 3 2344 466777777777777632  34667777888888888877 4555544357788


Q ss_pred             cEEEeccccccccC-CccccCCCCCcEEEccCccccccccc----cccccccCccccC
Q 001801          725 VILNLRSNIFDGQF-PTELCFLTSLQILDLGYNNLSGAIPK----CISNLSAMVTVDY  777 (1011)
Q Consensus       725 ~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~l~~  777 (1011)
                      ++|++++|++...- -..+..+++|+.|+|.+|+++.. +.    .+..+++|+.+|.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            88888888776421 24566788888888888888743 32    2566777766654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=4.8e-09  Score=102.29  Aligned_cols=104  Identities=34%  Similarity=0.420  Sum_probs=25.5

Q ss_pred             CCCEEEcCCCCCCCCCCCCCC-CCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccc-cCCCCCCE
Q 001801          234 SLRVLRLSGCQLDHFHPPPIV-NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRH  311 (1011)
Q Consensus       234 ~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~  311 (1011)
                      ++++|+|++|.|+.+  +.++ .+.+|+.|++++|.++..    +.+..+++|++|++++|.++.. .+.+ ..+++|++
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l----~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL----EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE   92 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S------TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc----cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence            444444444444443  1232 344555555555555431    2334455555555555555532 2222 24555555


Q ss_pred             EeCCCCCCCCC-cchhccCCCCCcEEEccCCCCC
Q 001801          312 LDLSYNDFNSS-IPNWLASFSNLVHISLRSNSLQ  344 (1011)
Q Consensus       312 L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~  344 (1011)
                      |++++|++... .-..+..+++|+.|++.+|.++
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            65555555431 1133445555556666555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.79  E-value=1.3e-09  Score=109.45  Aligned_cols=206  Identities=24%  Similarity=0.311  Sum_probs=113.2

Q ss_pred             cccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCC--CCCC
Q 001801          125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVD--NLSW  202 (1011)
Q Consensus       125 ~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~--~~~~  202 (1011)
                      .+|-.+.-+++|..+.+|.+.-. .|-+....-+-|+++...+..+.. .|. +-....+.  |.....-....  ....
T Consensus       205 ~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~--D~~~~E~~t~~G~~~~~  279 (490)
T KOG1259|consen  205 RLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILA--DPSGSEPSTSNGSALVS  279 (490)
T ss_pred             ccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-ccc-ccchhhhc--CccCCCCCccCCceEEe
Confidence            44556667788888888877532 122222233567777777665542 111 11111111  22111111100  1112


Q ss_pred             CCCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCC
Q 001801          203 LPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGL  282 (1011)
Q Consensus       203 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l  282 (1011)
                      +..-+.|+++|+++|.++..   ...+.-.|.++.|++++|++....  .+..+++|+.||||+|.++.   +-.|-..+
T Consensus       280 ~dTWq~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~---~~Gwh~KL  351 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE---CVGWHLKL  351 (490)
T ss_pred             cchHhhhhhccccccchhhh---hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh---hhhhHhhh
Confidence            22334566777777766554   334555677777777777776653  36667777777777777654   44455566


Q ss_pred             CCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCC-cchhccCCCCCcEEEccCCCCCC
Q 001801          283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSS-IPNWLASFSNLVHISLRSNSLQG  345 (1011)
Q Consensus       283 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~  345 (1011)
                      .+++.|.|+.|.+..  ...++++-+|..||+++|++... --..++++|.|+++.|.+|.+.+
T Consensus       352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            677777777776642  23455666677777777766532 12345666666666666666654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.77  E-value=5.7e-09  Score=76.17  Aligned_cols=41  Identities=56%  Similarity=1.042  Sum_probs=30.7

Q ss_pred             CHHHHHHHHhhhccCC-CCCCCccCCCCCCC-CCCCccceeeEec
Q 001801           33 IESEREALLKFKKDLK-DPSNRLVSWNGAGD-GADCCKWSGVVCD   75 (1011)
Q Consensus        33 ~~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~   75 (1011)
                      +++|++||++||+++. +|.+.+.+|+.  . .++||.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            3689999999999998 57789999984  3 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=1.8e-09  Score=108.51  Aligned_cols=130  Identities=24%  Similarity=0.288  Sum_probs=71.8

Q ss_pred             CCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCC
Q 001801          331 SNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDR  410 (1011)
Q Consensus       331 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  410 (1011)
                      +.|+++||++|.++ .+..++.-.| .++.|++++|.+...  ..+..+++|+.|||++|.+..                
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~----------------  343 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE----------------  343 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhHh----------------
Confidence            45566666666555 2333333334 666666666665532  235556666666666665221                


Q ss_pred             cceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEcc
Q 001801          411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS  490 (1011)
Q Consensus       411 L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  490 (1011)
                                    +..+-..+-++++|.++.|.+...  ..++.+-+|..||+++|+|...-....++++|-|+.+.+.
T Consensus       344 --------------~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  344 --------------CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             --------------hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence                          111222345566677777766533  3455666677777777776654333456666666666666


Q ss_pred             CCeeee
Q 001801          491 GNALTL  496 (1011)
Q Consensus       491 ~n~l~~  496 (1011)
                      +|++..
T Consensus       408 ~NPl~~  413 (490)
T KOG1259|consen  408 GNPLAG  413 (490)
T ss_pred             CCCccc
Confidence            666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=7.9e-09  Score=82.71  Aligned_cols=60  Identities=42%  Similarity=0.568  Sum_probs=38.2

Q ss_pred             cCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcc
Q 001801          850 ALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYL  909 (1011)
Q Consensus       850 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  909 (1011)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655445666666666666666666666666666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.72  E-value=1.3e-08  Score=124.10  Aligned_cols=180  Identities=24%  Similarity=0.307  Sum_probs=101.9

Q ss_pred             CCCCEEECCCCC--CCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcE
Q 001801          134 QHLNYLDLSGNS--FGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQH  211 (1011)
Q Consensus       134 ~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~  211 (1011)
                      +.|++|-+.+|.  +....+++|..++.|++|||++|.--+.+|..+++|.+||+|+++++.+                 
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-----------------  607 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-----------------  607 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-----------------
Confidence            356666666664  3322334466677777777776665556777777777777777766532                 


Q ss_pred             EeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEcc
Q 001801          212 LDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLG  291 (1011)
Q Consensus       212 L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls  291 (1011)
                              .   .+|..+.+++.|.+|++..+.....++.....+++|++|.+..............+..+.+|+.+...
T Consensus       608 --------~---~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  608 --------S---HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             --------c---ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence                    2   23556677777777777766655555566666777777777665543333344555666666666654


Q ss_pred             CCCCcccCcccccCCCCCC----EEeCCCCCCCCCcchhccCCCCCcEEEccCCCCC
Q 001801          292 SNDFQGSIPVGLQNLTSLR----HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ  344 (1011)
Q Consensus       292 ~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  344 (1011)
                      ....  .+-..+..++.|+    .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus       677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence            4332  1111222222222    2222222221 34455666777777777777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.66  E-value=2e-08  Score=80.36  Aligned_cols=60  Identities=30%  Similarity=0.491  Sum_probs=56.2

Q ss_pred             eeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcc
Q 001801          826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL  885 (1011)
Q Consensus       826 ~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l  885 (1011)
                      .|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            468899999999987778999999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.57  E-value=5.3e-09  Score=119.79  Aligned_cols=241  Identities=27%  Similarity=0.302  Sum_probs=146.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcE
Q 001801          132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQH  211 (1011)
Q Consensus       132 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~  211 (1011)
                      .+..++.+++..|.+.. +-..++.+++|++|++.+|.+. .+...+..+++|++|++++|.+..+..   +..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc---hhhccchhh
Confidence            45666666677776643 3344667788888888888877 333336777888888888886554443   444555778


Q ss_pred             EeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCC-CCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEc
Q 001801          212 LDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHP-PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDL  290 (1011)
Q Consensus       212 L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  290 (1011)
                      |++.+|.+.+...    +..++.|+.+++++|++....+ . ...+.+++.+++.+|.+..    ...+..+..+..+++
T Consensus       145 L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l  215 (414)
T KOG0531|consen  145 LNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSL  215 (414)
T ss_pred             heeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhc
Confidence            8888887777543    4447777888888887777655 3 4667777888888887753    233444455555577


Q ss_pred             cCCCCcccCcccccCCC--CCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcC
Q 001801          291 GSNDFQGSIPVGLQNLT--SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL  368 (1011)
Q Consensus       291 s~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l  368 (1011)
                      ..|.++..-+  +..+.  +|+.+++++|.+. ..+..+..+.++..+++.+|++...-.  +...+ .+..+....+.+
T Consensus       216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~-~~~~~~~~~~~~  289 (414)
T KOG0531|consen  216 LDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLP-KLSELWLNDNKL  289 (414)
T ss_pred             ccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccc-hHHHhccCcchh
Confidence            7777663322  22223  3778888888776 233456667777777777777653221  11222 444555555554


Q ss_pred             cCC---Cch-hccCCCCCCEEEccCccC
Q 001801          369 EGQ---IPR-SFGRLCNLREISLSDVKM  392 (1011)
Q Consensus       369 ~~~---~p~-~l~~l~~L~~L~L~~n~~  392 (1011)
                      ...   ... .....+.++...+..+..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  290 ALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             cchhhhhccccccccccccccccccCcc
Confidence            321   111 134455566666665553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.56  E-value=8.7e-09  Score=118.05  Aligned_cols=217  Identities=32%  Similarity=0.353  Sum_probs=123.2

Q ss_pred             CcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEc
Q 001801          625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM  704 (1011)
Q Consensus       625 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  704 (1011)
                      ..++.+++..|.+.. +-..+..+.+|+.|++.+|++... ...+..+++|++|++++|.|+...  .+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            455555666665553 222345556666666666666632 222555666666666666665332  2444555666666


Q ss_pred             CCCccccccChhHhhccCCCcEEEeccccccccCC-ccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCC
Q 001801          705 DGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFP-TELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTH  783 (1011)
Q Consensus       705 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~  783 (1011)
                      ++|.++ .++.. . .++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...-.     +.             
T Consensus       148 ~~N~i~-~~~~~-~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-----~~-------------  205 (414)
T KOG0531|consen  148 SGNLIS-DISGL-E-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-----LD-------------  205 (414)
T ss_pred             ccCcch-hccCC-c-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-----hH-------------
Confidence            666665 22221 1 25556666666666554322 1 3445555555555555541110     00             


Q ss_pred             CCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccc--cCceeeccCccc
Q 001801          784 PGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLV--ALRSLNLSYNHF  861 (1011)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l  861 (1011)
                                                             ....+..+++..|.++-.-+  +..+.  .|+.+++++|++
T Consensus       206 ---------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  206 ---------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI  244 (414)
T ss_pred             ---------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc
Confidence                                                   01112334777777763322  12222  388999999999


Q ss_pred             cccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccc
Q 001801          862 SGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG  911 (1011)
Q Consensus       862 ~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  911 (1011)
                      . .++..+..+..+..||+++|+++..-  .+.....+..+..+.|++..
T Consensus       245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  245 S-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             c-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcc
Confidence            8 55566778899999999999987643  24455667777788887764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=2.5e-08  Score=100.64  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=81.5

Q ss_pred             CCCCCEEeCCCCCCcCCCCCCCCC-CCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCc
Q 001801          181 LSKLQYLDLVENSELYVDNLSWLP-GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSI  259 (1011)
Q Consensus       181 l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  259 (1011)
                      ...++.|.+.++.+-..+....++ .++.++++||.+|.++++.++...+.++|.|+.|+++.|.+...+...-...++|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            334455555555444444444343 4678889999999999998888899999999999999999887654333567889


Q ss_pred             cEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCC
Q 001801          260 SVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDF  295 (1011)
Q Consensus       260 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l  295 (1011)
                      ++|-|.+..+... .....+..++.+++|.++.|++
T Consensus       124 ~~lVLNgT~L~w~-~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  124 RVLVLNGTGLSWT-QSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEEEEcCCCCChh-hhhhhhhcchhhhhhhhccchh
Confidence            9999988877643 1334556777778888777743

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=4.7e-09  Score=105.74  Aligned_cols=182  Identities=28%  Similarity=0.265  Sum_probs=116.6

Q ss_pred             CCCCEEECCCCCCCCC-CCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcEE
Q 001801          134 QHLNYLDLSGNSFGGG-IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHL  212 (1011)
Q Consensus       134 ~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L  212 (1011)
                      ++|++||||...++-. +-..+..|.+|+.|.|.++.+.+.+...+++-.+|+.|+|+.|...+..              
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--------------  250 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--------------  250 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--------------
Confidence            3588999998887644 4556778889999999999988888888888888888888877422211              


Q ss_pred             eCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCC-C-CCCccEEECCCCCCC-CChhhhHhhhCCCCCcEEE
Q 001801          213 DLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIV-N-ISSISVLDLSSNQFD-QNSLVLSWVFGLSNLVYLD  289 (1011)
Q Consensus       213 ~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~-l~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~  289 (1011)
                                 .....+.+++.|.+|++++|.++...-..+. . -++|+.|+++++.-. +..-+......+++|..||
T Consensus       251 -----------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  251 -----------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             -----------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence                       2234456677777777777765543221111 1 146777777765321 1111333345778888888


Q ss_pred             ccCCC-CcccCcccccCCCCCCEEeCCCCCCCCCcchhc---cCCCCCcEEEccCCC
Q 001801          290 LGSND-FQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWL---ASFSNLVHISLRSNS  342 (1011)
Q Consensus       290 Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~n~  342 (1011)
                      |++|. ++...-..|.+++.|++|.++.|..  .+|+.+   ...+.|.+|++.++-
T Consensus       320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            88764 3434445566777888888887763  455543   355677777776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=3.5e-08  Score=99.58  Aligned_cols=180  Identities=22%  Similarity=0.166  Sum_probs=124.7

Q ss_pred             CCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcE
Q 001801          208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVY  287 (1011)
Q Consensus       208 ~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  287 (1011)
                      .||+|||+...++.. .+...+..|++|+.|.+.++++.+.+...+++-..|+.|+++.+.--......-.+.+++.|.+
T Consensus       186 Rlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            366666666555432 2344567788888888888888888778888888899999887643222224456778999999


Q ss_pred             EEccCCCCcccCcccc-cC-CCCCCEEeCCCCCCC---CCcchhccCCCCCcEEEccCCC-CCCchhhHHHhhhccccEE
Q 001801          288 LDLGSNDFQGSIPVGL-QN-LTSLRHLDLSYNDFN---SSIPNWLASFSNLVHISLRSNS-LQGSITGFLANLSASIEVL  361 (1011)
Q Consensus       288 L~Ls~n~l~~~~p~~l-~~-l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~L~~L  361 (1011)
                      |++++|.+....-..+ .. -++|+.|+++|+.-.   ..+..-..++++|.+|||++|. ++......+..++ .|++|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hheee
Confidence            9999998775432222 22 257889999887421   1222233578999999999875 4444555667777 89999


Q ss_pred             ecccCcCcCCCch---hccCCCCCCEEEccCcc
Q 001801          362 DLSSQQLEGQIPR---SFGRLCNLREISLSDVK  391 (1011)
Q Consensus       362 ~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~  391 (1011)
                      .++.|..  .+|.   .+...++|.+|++.++-
T Consensus       344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            9998863  4555   35677889999888765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.13  E-value=6.1e-07  Score=89.62  Aligned_cols=89  Identities=21%  Similarity=0.221  Sum_probs=43.3

Q ss_pred             hCCCCCcEEEccCCCCccc----CcccccCCCCCCEEeCCCCCCCCCcchhc----c--CCCCCcEEEccCCCCCCch--
Q 001801          280 FGLSNLVYLDLGSNDFQGS----IPVGLQNLTSLRHLDLSYNDFNSSIPNWL----A--SFSNLVHISLRSNSLQGSI--  347 (1011)
Q Consensus       280 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~--~l~~L~~L~L~~n~l~~~~--  347 (1011)
                      ..+++|+.||++.|-++-.    +..++...+.|+.|.+..|-++..-..++    .  ..++|..|...+|.+.+.+  
T Consensus       211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence            3455556666665555432    12223344455666666665543222211    1  3455666666666544322  


Q ss_pred             ----hhHHH-hhhccccEEecccCcCc
Q 001801          348 ----TGFLA-NLSASIEVLDLSSQQLE  369 (1011)
Q Consensus       348 ----~~~l~-~l~~~L~~L~Ls~n~l~  369 (1011)
                          +.... ++| -|..|.+.+|.+.
T Consensus       291 ~~~l~~~e~~~~p-~L~~le~ngNr~~  316 (388)
T COG5238         291 DISLNEFEQDAVP-LLVDLERNGNRIK  316 (388)
T ss_pred             eechhhhhhcccH-HHHHHHHccCcch
Confidence                12221 233 6666777777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.13  E-value=1.1e-06  Score=87.88  Aligned_cols=251  Identities=20%  Similarity=0.175  Sum_probs=150.7

Q ss_pred             ccCCCCCCEEECCCCCCCCC----CCccccCCCCCCEeeCCCCCCC---CCCc-------cccCCCCCCCEEeCCCCCCc
Q 001801          130 LLHFQHLNYLDLSGNSFGGG----IPRFLGSMGKLKYLNLSGAGFK---GMIP-------HQLGNLSKLQYLDLVENSEL  195 (1011)
Q Consensus       130 l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~---~~~p-------~~l~~l~~L~~L~L~~n~~~  195 (1011)
                      +..+..+..+|||+|.|...    +...+.+-++|+..+++.-...   ..+|       +.+-+|++|+..+||+|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            34478889999999998544    4455666788888888864221   1223       33457778888888777432


Q ss_pred             CCCCC---CCCCCCCCCcEEeCCCCCCCCccc--hHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCC
Q 001801          196 YVDNL---SWLPGLSLLQHLDLGGVNLGKAFD--WSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFD  270 (1011)
Q Consensus       196 ~~~~~---~~l~~l~~L~~L~L~~~~~~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  270 (1011)
                      .....   ..++.-+.|.||.+++|.+.....  +..++..+.        .       ....++-+.|++.....|++.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--------~-------nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--------Y-------NKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--------H-------HhhhccCCCceEEEeccchhc
Confidence            21110   123444555555555555443311  111110000        0       011234467777777777775


Q ss_pred             CCh--hhhHhhhCCCCCcEEEccCCCCccc-----CcccccCCCCCCEEeCCCCCCCCCc----chhccCCCCCcEEEcc
Q 001801          271 QNS--LVLSWVFGLSNLVYLDLGSNDFQGS-----IPVGLQNLTSLRHLDLSYNDFNSSI----PNWLASFSNLVHISLR  339 (1011)
Q Consensus       271 ~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~  339 (1011)
                      ..+  .....+..-..|+++.+..|.+.-.     +-..+..+.+|+.|||..|.++-.-    ...+...+.|+.|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            421  1223344446899999999887633     2223567899999999999987532    2334456779999999


Q ss_pred             CCCCCCchhhHHH----h-hhccccEEecccCcCcCCCchh-------ccCCCCCCEEEccCccCCcc
Q 001801          340 SNSLQGSITGFLA----N-LSASIEVLDLSSQQLEGQIPRS-------FGRLCNLREISLSDVKMSQD  395 (1011)
Q Consensus       340 ~n~l~~~~~~~l~----~-l~~~L~~L~Ls~n~l~~~~p~~-------l~~l~~L~~L~L~~n~~~~~  395 (1011)
                      +|-++..-...+.    . ..++|..|...+|...+.+...       =.+++-|..|.+.+|.+...
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            9988765443322    1 1238888989888876544322       14567788888888887643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.04  E-value=3.3e-07  Score=82.11  Aligned_cols=94  Identities=31%  Similarity=0.491  Sum_probs=60.4

Q ss_pred             ccEEeCcCCcccccCCcc---ccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEE
Q 001801          675 LTLLHLQKNSLSGRIPES---LSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQIL  751 (1011)
Q Consensus       675 L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  751 (1011)
                      +..++|++|++- .+++.   +.....|+..+|++|.+. .+|..+...++.+++|++++|.++ .+|.++..+++|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            444555555553 23332   233445666677777776 667666656677778888888777 567778888888888


Q ss_pred             EccCccccccccccccccccC
Q 001801          752 DLGYNNLSGAIPKCISNLSAM  772 (1011)
Q Consensus       752 ~Ls~N~l~~~~p~~l~~l~~L  772 (1011)
                      +++.|++. ..|+-+..|.++
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             ccccCccc-cchHHHHHHHhH
Confidence            88888876 455555445444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.03  E-value=3.1e-07  Score=103.40  Aligned_cols=105  Identities=26%  Similarity=0.289  Sum_probs=54.5

Q ss_pred             CCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCcc-ccCCCcccEEeCcCCcccccCCccccCCCCCcEE
Q 001801          624 RGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSL  702 (1011)
Q Consensus       624 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  702 (1011)
                      ++.++.|+|++|++...-  .+..++.|++|||++|.+. .+|.. ..++ .|+.|.+++|.++.  -.++.++.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh--hhhHHhhhhhhcc
Confidence            345666666666665332  5555666666666666665 33331 1222 26666666666542  1345556666666


Q ss_pred             EcCCCccccccChhHhhccCCCcEEEeccccc
Q 001801          703 NMDGNQFSGDIPTWIGEKFSSMVILNLRSNIF  734 (1011)
Q Consensus       703 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l  734 (1011)
                      |+++|-+.+.-.-...-.+..|+.|.|.+|.+
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            66666555332111111345566666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=4.6e-06  Score=84.60  Aligned_cols=64  Identities=23%  Similarity=0.355  Sum_probs=34.8

Q ss_pred             CCCCCEEEccCCcCCCcCc-ccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeee
Q 001801          432 FKSLDSLFLSHNSISGLIP-SSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT  495 (1011)
Q Consensus       432 l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  495 (1011)
                      +|++..+-+..|.+...-. ..+..++.+..|+|+.|+|..--.-..+..++.|..|.++++++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            3455556666665543211 233445555566666666655433345566666666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=6.9e-07  Score=80.09  Aligned_cols=135  Identities=24%  Similarity=0.351  Sum_probs=92.1

Q ss_pred             cccEEeeccccccccCChhhhc---cccCcEEecCCCcccccCCcccc-CCCcccEEeCcCCcccccCCccccCCCCCcE
Q 001801          626 ELQVLNLENNSFSGEIPDCWMN---FLYLRVLNLGNNNFTGNLPPSLG-SLGSLTLLHLQKNSLSGRIPESLSNCNRLVS  701 (1011)
Q Consensus       626 ~L~~L~L~~n~l~~~~p~~~~~---l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  701 (1011)
                      .+..++|++|++- .+++....   ...|+..+|++|.+. .+|+.|. ..+.++.|+|++|+++ .+|+.+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3556777777764 34444433   345666788888888 4555554 3457888888888887 67888888888888


Q ss_pred             EEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccc
Q 001801          702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCI  766 (1011)
Q Consensus       702 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  766 (1011)
                      |+++.|++. ..|.-++ .+.+|-.|+..+|... .+|-.+..-+..-..++.++++.+.-|..+
T Consensus       105 lNl~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl  166 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL  166 (177)
T ss_pred             cccccCccc-cchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence            888888887 6777777 4888888888888776 455444333333344556667766555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.90  E-value=1.2e-06  Score=98.86  Aligned_cols=102  Identities=28%  Similarity=0.339  Sum_probs=45.3

Q ss_pred             CcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEec
Q 001801          651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR  730 (1011)
Q Consensus       651 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~  730 (1011)
                      |.+.+.++|.+. .+..++.-++.|+.|+|++|+++..  +.+..|+.|++|||++|.+. .+|..-...+ +|+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            444444455444 3334444444555555555554422  14444555555555555554 3332211111 24555555


Q ss_pred             cccccccCCccccCCCCCcEEEccCcccc
Q 001801          731 SNIFDGQFPTELCFLTSLQILDLGYNNLS  759 (1011)
Q Consensus       731 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  759 (1011)
                      +|.++..  .++.+|.+|+.||+++|-+.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence            5544432  23444455555555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.84  E-value=1.3e-06  Score=92.93  Aligned_cols=288  Identities=19%  Similarity=0.103  Sum_probs=131.1

Q ss_pred             CCCCEEECCCCCCCCC--CCccccCCCCCCEeeCCCCC-CCCCCcccc-CCCCCCCEEeCCCCCCcCCCCCCC-CCCCCC
Q 001801          134 QHLNYLDLSGNSFGGG--IPRFLGSMGKLKYLNLSGAG-FKGMIPHQL-GNLSKLQYLDLVENSELYVDNLSW-LPGLSL  208 (1011)
Q Consensus       134 ~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~L~~n~~~~~~~~~~-l~~l~~  208 (1011)
                      ..|+.|.+.++.-.+.  +-..-.+++++++|++.++. +++..-.++ ..+++|++|+|..|...+...+.. ..++++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4688888888754333  33445678888888888875 333322333 457788888887764322222221 124555


Q ss_pred             CcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEE
Q 001801          209 LQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYL  288 (1011)
Q Consensus       209 L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L  288 (1011)
                      |++|+++.+.......+.....+++.++.+.++                        ++.-.+...+...-..+..+.++
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k------------------------GC~e~~le~l~~~~~~~~~i~~l  273 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLK------------------------GCLELELEALLKAAAYCLEILKL  273 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhc------------------------ccccccHHHHHHHhccChHhhcc
Confidence            555555554332222222223333333333333                        32211111111122233334444


Q ss_pred             EccCCCC-cccC-cccccCCCCCCEEeCCCCCCCC-Ccchhc-cCCCCCcEEEccCCC-CCCchhhHHHhhhccccEEec
Q 001801          289 DLGSNDF-QGSI-PVGLQNLTSLRHLDLSYNDFNS-SIPNWL-ASFSNLVHISLRSNS-LQGSITGFLANLSASIEVLDL  363 (1011)
Q Consensus       289 ~Ls~n~l-~~~~-p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l-~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~L~~L~L  363 (1011)
                      ++..|.. +..- -..=..+..|++|+.+++.-.+ ..-..+ .+.++|+.|-+..++ ++..-...++...+.|+.+++
T Consensus       274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~  353 (483)
T KOG4341|consen  274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL  353 (483)
T ss_pred             chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence            4444422 1110 0011234555555555443211 111222 244556666665554 222222223322225666666


Q ss_pred             ccCcCc--CCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEcc
Q 001801          364 SSQQLE--GQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLS  441 (1011)
Q Consensus       364 s~n~l~--~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls  441 (1011)
                      ..+...  +.+...-.+++.|+++.++.+....+.....                        +...-..+..|+.+.++
T Consensus       354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~------------------------l~~~~c~~~~l~~lEL~  409 (483)
T KOG4341|consen  354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH------------------------LSSSSCSLEGLEVLELD  409 (483)
T ss_pred             cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh------------------------hhhccccccccceeeec
Confidence            555432  1122222345666666666554221110000                        01112334567777777


Q ss_pred             CCcCC-CcCcccccCCCcCcEEEeecCcc
Q 001801          442 HNSIS-GLIPSSLGGLSSLERVVLSNNTL  469 (1011)
Q Consensus       442 ~n~l~-~~~p~~l~~l~~L~~L~L~~n~l  469 (1011)
                      ++... ...-+.+..+++|+.+++.+++-
T Consensus       410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  410 NCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             CCCCchHHHHHHHhhCcccceeeeechhh
Confidence            77543 23334456677888888777754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=1.7e-05  Score=57.94  Aligned_cols=36  Identities=31%  Similarity=0.615  Sum_probs=23.0

Q ss_pred             cCceeeccCccccccccccccCCCCCCEEeCcCCccc
Q 001801          850 ALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS  886 (1011)
Q Consensus       850 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~  886 (1011)
                      +|++|++++|+|+ .+|+.+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666777777776 45556677777777777777666

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.67  E-value=3.1e-06  Score=90.00  Aligned_cols=85  Identities=27%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             CCcceeeccCCccc--ccCcccccCCCCCCEEEccCCcCCCcC-----cccccCCCcCcEEEeecCccccccChhhhcCC
Q 001801          409 DRLESWDMTGCKIF--GHLTSQIGHFKSLDSLFLSHNSISGLI-----PSSLGGLSSLERVVLSNNTLKGYLSEIHLANL  481 (1011)
Q Consensus       409 ~~L~~L~L~~~~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  481 (1011)
                      ..|+.+++.+|...  +.+...-.+++.|+.+.+++|......     ...-..+..|+.+.++++.....-....+..+
T Consensus       346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence            34555555554432  223333345777888888877532221     11123456677777777766544333455666


Q ss_pred             CCccEEEccCCe
Q 001801          482 SKLVSFDVSGNA  493 (1011)
Q Consensus       482 ~~L~~L~L~~n~  493 (1011)
                      ++|+.+++.+++
T Consensus       426 ~~Leri~l~~~q  437 (483)
T KOG4341|consen  426 RNLERIELIDCQ  437 (483)
T ss_pred             cccceeeeechh
Confidence            666666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.65  E-value=0.00012  Score=80.57  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=52.3

Q ss_pred             ccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCC
Q 001801          669 LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSL  748 (1011)
Q Consensus       669 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  748 (1011)
                      +..+.+++.|++++|.++ .+|.   --.+|++|++++|.-...+|..+   .++|+.|++++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            445678999999999877 4562   23469999998865445677654   35888999988843334553      46


Q ss_pred             cEEEccCccc
Q 001801          749 QILDLGYNNL  758 (1011)
Q Consensus       749 ~~L~Ls~N~l  758 (1011)
                      +.|++++|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            6777776554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00022  Score=78.46  Aligned_cols=133  Identities=18%  Similarity=0.254  Sum_probs=64.7

Q ss_pred             cCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEec
Q 001801          577 ATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNL  656 (1011)
Q Consensus       577 ~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  656 (1011)
                      +..++.|++++|.++ .+|..+.+|+.|.++++.--..+|..+    .++|+.|++++|.....+|.      +|+.|++
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L  119 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPVLPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGLPE------SVRSLEI  119 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCCCCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccccc------ccceEEe
Confidence            344555555555444 334445556666665543333344333    23567777776632223443      3566666


Q ss_pred             CCCccc--ccCCccccCCCcccEEeCcCCccc--ccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccc
Q 001801          657 GNNNFT--GNLPPSLGSLGSLTLLHLQKNSLS--GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN  732 (1011)
Q Consensus       657 s~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N  732 (1011)
                      +.+...  +.+|.      +|+.|.+.+++..  ..+|..  --++|++|++++|... .+|..+   ..+|+.|+++.+
T Consensus       120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE  187 (426)
T ss_pred             CCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence            655432  12332      4555655433211  011111  1146777777777654 344433   246777777665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.58  E-value=5.2e-05  Score=55.35  Aligned_cols=38  Identities=47%  Similarity=0.685  Sum_probs=32.5

Q ss_pred             CCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccc
Q 001801          873 KSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG  911 (1011)
Q Consensus       873 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  911 (1011)
                      ++|++|++++|+|+ .+|..+++|++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 567789999999999999999874

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.50  E-value=5e-05  Score=90.88  Aligned_cols=84  Identities=26%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             CCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCC
Q 001801          206 LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNL  285 (1011)
Q Consensus       206 l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  285 (1011)
                      +|+|++|.+++-.+... +......++++|+.||+|+++++..  ..++++++|++|.+.+-.+.... .-..+.++++|
T Consensus       147 LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~-~l~~LF~L~~L  222 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ-DLIDLFNLKKL  222 (699)
T ss_pred             CcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh-hHHHHhcccCC
Confidence            44444444444433322 1334445556666666666555544  34455555555555554443210 22334445555


Q ss_pred             cEEEccCC
Q 001801          286 VYLDLGSN  293 (1011)
Q Consensus       286 ~~L~Ls~n  293 (1011)
                      +.||+|..
T Consensus       223 ~vLDIS~~  230 (699)
T KOG3665|consen  223 RVLDISRD  230 (699)
T ss_pred             Ceeecccc
Confidence            55555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.45  E-value=0.00014  Score=70.38  Aligned_cols=88  Identities=23%  Similarity=0.223  Sum_probs=72.5

Q ss_pred             CCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcEE
Q 001801          133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHL  212 (1011)
Q Consensus       133 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L  212 (1011)
                      +.....+||++|.+..  ...|..+++|.+|.|++|+|+..-|.--.-+++|+.|.|.+|.+...+++..++.+++|++|
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3567789999998842  24567889999999999999976666556678899999999999888888888888889988


Q ss_pred             eCCCCCCCCc
Q 001801          213 DLGGVNLGKA  222 (1011)
Q Consensus       213 ~L~~~~~~~~  222 (1011)
                      .+-+|.++..
T Consensus       119 tll~Npv~~k  128 (233)
T KOG1644|consen  119 TLLGNPVEHK  128 (233)
T ss_pred             eecCCchhcc
Confidence            8888877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.38  E-value=0.00011  Score=88.10  Aligned_cols=152  Identities=27%  Similarity=0.354  Sum_probs=99.5

Q ss_pred             CCCcEEeCCCCCCCCccchHHHhcC-CCCCCEEEcCCCCCCCCC-CCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCC
Q 001801          207 SLLQHLDLGGVNLGKAFDWSLAINS-LSSLRVLRLSGCQLDHFH-PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN  284 (1011)
Q Consensus       207 ~~L~~L~L~~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  284 (1011)
                      .+|++|++++...- ...|+..++. +|.|+.|.+++-.+.... .....++++|..||+|+.+++.    ...++++++
T Consensus       122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----l~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN----LSGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC----cHHHhcccc
Confidence            34566666554332 2356666654 799999999887664432 2334577899999999988875    267788899


Q ss_pred             CcEEEccCCCCcc-cCcccccCCCCCCEEeCCCCCCCCCc--c----hhccCCCCCcEEEccCCCCCCchhhHHHhhhcc
Q 001801          285 LVYLDLGSNDFQG-SIPVGLQNLTSLRHLDLSYNDFNSSI--P----NWLASFSNLVHISLRSNSLQGSITGFLANLSAS  357 (1011)
Q Consensus       285 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~  357 (1011)
                      |+.|.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..+|+|+.||.++..+....-+.+-+-.++
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            9988888776653 33345778899999999877654321  1    111247888888888777776655554443335


Q ss_pred             ccEEec
Q 001801          358 IEVLDL  363 (1011)
Q Consensus       358 L~~L~L  363 (1011)
                      |+.+..
T Consensus       277 L~~i~~  282 (699)
T KOG3665|consen  277 LQQIAA  282 (699)
T ss_pred             Hhhhhh
Confidence            554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00021  Score=72.36  Aligned_cols=118  Identities=24%  Similarity=0.185  Sum_probs=86.9

Q ss_pred             CCccccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCC--CCCCCCccccCCCCCCCEEeCCCCCCcCCCC
Q 001801          122 FGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGA--GFKGMIPHQLGNLSKLQYLDLVENSELYVDN  199 (1011)
Q Consensus       122 ~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~  199 (1011)
                      ..|.+....-.+..|+.|++.+..++..  ..+-.+++|++|.++.|  .+++.++....++++|++|+++.|++..+..
T Consensus        31 ~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst  108 (260)
T KOG2739|consen   31 GAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST  108 (260)
T ss_pred             cCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence            3455666666777788888777766532  33456789999999999  7777777777778999999999999888888


Q ss_pred             CCCCCCCCCCcEEeCCCCCCCCccchH-HHhcCCCCCCEEEcC
Q 001801          200 LSWLPGLSLLQHLDLGGVNLGKAFDWS-LAINSLSSLRVLRLS  241 (1011)
Q Consensus       200 ~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~l~~l~~L~~L~Ls  241 (1011)
                      +..++.+.+|..|++..|..+...+.. ..+.-+++|+.|+-.
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            888888889999999988777654332 234456666666533

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.16  E-value=0.00066  Score=65.81  Aligned_cols=103  Identities=21%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             cCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCcccc--ccChhHhhccCCCcEE
Q 001801          650 YLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG--DIPTWIGEKFSSMVIL  727 (1011)
Q Consensus       650 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L  727 (1011)
                      +...+||++|.+...  +.|..++.|.+|.+++|+|+.+-|.--.-+++|+.|.|.+|.+..  .+-. +. .+++|++|
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La-~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LA-SCPKLEYL  118 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hc-cCCcccee
Confidence            455666666666522  235556666666666666665555444445566666666666541  1111 11 46666677


Q ss_pred             EeccccccccC---CccccCCCCCcEEEccCc
Q 001801          728 NLRSNIFDGQF---PTELCFLTSLQILDLGYN  756 (1011)
Q Consensus       728 ~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N  756 (1011)
                      .+-+|.++..-   -.-+..+++|+.||.+.=
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            66666655321   123566777777776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.24  E-value=0.012  Score=55.16  Aligned_cols=105  Identities=15%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             hhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCC
Q 001801          645 WMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSM  724 (1011)
Q Consensus       645 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  724 (1011)
                      |.++++|+.+.+.. .+...-...|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++...+..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence            33444444444442 233233334444444444444443 3323333444444444444433 221 2333333234455


Q ss_pred             cEEEeccccccccCCccccCCCCCcEEEccC
Q 001801          725 VILNLRSNIFDGQFPTELCFLTSLQILDLGY  755 (1011)
Q Consensus       725 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  755 (1011)
                      +.+++..+ +...-...+.+. .|+.+.+..
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            55554433 222222334443 555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.00015  Score=73.26  Aligned_cols=104  Identities=22%  Similarity=0.233  Sum_probs=75.6

Q ss_pred             CCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcE
Q 001801          132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQH  211 (1011)
Q Consensus       132 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~  211 (1011)
                      .+.+.+.|+..+|.+++.  ....+|+.|++|.||-|.|+..-|  +..|++|+.|.|..|.+..+..+..+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            356778899999988754  234578899999999999885544  7788899999999888777777777888888888


Q ss_pred             EeCCCCCCCCccc---hHHHhcCCCCCCEEE
Q 001801          212 LDLGGVNLGKAFD---WSLAINSLSSLRVLR  239 (1011)
Q Consensus       212 L~L~~~~~~~~~~---~~~~l~~l~~L~~L~  239 (1011)
                      |.|..|.......   -...+.-+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888776544321   123455566666664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.16  E-value=0.01  Score=55.54  Aligned_cols=83  Identities=12%  Similarity=0.189  Sum_probs=30.6

Q ss_pred             hcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCC
Q 001801          229 INSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTS  308 (1011)
Q Consensus       229 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  308 (1011)
                      +.++++|+.+.+.. .+..+....|.++++|+.+.+..+ +...  ....|.++++++.+.+.. .+.......|..+++
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i--~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI--GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc--ceeeeecccccccccccc-ccccccccccccccc
Confidence            44445555555543 344444445555555555555443 3221  222344444455555543 222222333444555


Q ss_pred             CCEEeCCC
Q 001801          309 LRHLDLSY  316 (1011)
Q Consensus       309 L~~L~Ls~  316 (1011)
                      |+.+++..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            55555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.14  E-value=0.0029  Score=64.31  Aligned_cols=63  Identities=27%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             hccccCcEEecCCCcccccCCccccCCCcccEEeCcCC--cccccCCccccCCCCCcEEEcCCCccc
Q 001801          646 MNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKN--SLSGRIPESLSNCNRLVSLNMDGNQFS  710 (1011)
Q Consensus       646 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~  710 (1011)
                      ..+..|+.|.+.+..++..  ..+-.+++|++|.++.|  ++.+.++.....+++|++|++++|++.
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3344455555555444421  22334455555566555  444444444444455555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.75  E-value=0.0027  Score=74.95  Aligned_cols=175  Identities=26%  Similarity=0.160  Sum_probs=101.9

Q ss_pred             CCCCCCEEECCCCCCCCC--CCccccCCCCCCEeeCCCC-CCCCCC----ccccCCCCCCCEEeCCCCCCcCCCCCCCCC
Q 001801          132 HFQHLNYLDLSGNSFGGG--IPRFLGSMGKLKYLNLSGA-GFKGMI----PHQLGNLSKLQYLDLVENSELYVDNLSWLP  204 (1011)
Q Consensus       132 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~~~~~~----p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~  204 (1011)
                      .++.|+.|.+.++.-...  +-.....+++|+.|+++++ ......    ......+++|+.|+++.+.......+..++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            478888888888743332  3455667889999999873 222121    223456788999999988644444444444


Q ss_pred             -CCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCC--CCCCCCCCCCccEEECCCCCCCCChhhhHhhhC
Q 001801          205 -GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF--HPPPIVNISSISVLDLSSNQFDQNSLVLSWVFG  281 (1011)
Q Consensus       205 -~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~  281 (1011)
                       .+++|++|.+..+.-.+...+......++.|++|++++|.....  ......++++++.|.+....            .
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~------------~  333 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN------------G  333 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC------------C
Confidence             38899999988777433345666777888999999998865311  11122335555554433221            1


Q ss_pred             CCCCcEEEccCCCCc---ccCcccccCCCCCCEEeCCCCC
Q 001801          282 LSNLVYLDLGSNDFQ---GSIPVGLQNLTSLRHLDLSYND  318 (1011)
Q Consensus       282 l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~  318 (1011)
                      +..++.+.+......   .........+++++.+.+.++.
T Consensus       334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            223333333332221   1122234566667777666666

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0049  Score=37.35  Aligned_cols=19  Identities=42%  Similarity=0.613  Sum_probs=8.4

Q ss_pred             CceeeccCcccccccccccc
Q 001801          851 LRSLNLSYNHFSGRIPDSIG  870 (1011)
Q Consensus       851 L~~L~Ls~N~l~g~ip~~l~  870 (1011)
                      |++|||++|+|+ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344444444444 4444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.00095  Score=67.65  Aligned_cols=83  Identities=23%  Similarity=0.273  Sum_probs=40.9

Q ss_pred             CCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcE
Q 001801          208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVY  287 (1011)
Q Consensus       208 ~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~  287 (1011)
                      +.+.|++-+|.++++    ....+|+.|++|.|+-|+|+...  .+..|++|+.|.|..|.|.... ....+.++++|+.
T Consensus        20 ~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sld-EL~YLknlpsLr~   92 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLD-ELEYLKNLPSLRT   92 (388)
T ss_pred             HhhhhcccCCCccHH----HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHH-HHHHHhcCchhhh
Confidence            344445555555443    23445566666666666655542  2445555555555555554321 1223445555555


Q ss_pred             EEccCCCCcc
Q 001801          288 LDLGSNDFQG  297 (1011)
Q Consensus       288 L~Ls~n~l~~  297 (1011)
                      |.|..|.-.+
T Consensus        93 LWL~ENPCc~  102 (388)
T KOG2123|consen   93 LWLDENPCCG  102 (388)
T ss_pred             HhhccCCccc
Confidence            5555544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.57  E-value=0.0062  Score=71.93  Aligned_cols=79  Identities=28%  Similarity=0.285  Sum_probs=38.4

Q ss_pred             ccCCCCCCEEEccCCcCCCcC-cccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCC-CC-c
Q 001801          429 IGHFKSLDSLFLSHNSISGLI-PSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDW-IP-P  505 (1011)
Q Consensus       429 l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~-~  505 (1011)
                      ...+++++.+.+..+...... ...+.+++.|+ ..+..          .......++.|+++.+.......... .. .
T Consensus       358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~----------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~  426 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL----------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSC  426 (482)
T ss_pred             HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH----------HhccCCccceEecccCccccccchHHHhhhh
Confidence            455677777777777643322 23344555552 11111          11222226777777765432221111 11 4


Q ss_pred             cccceeecccCcC
Q 001801          506 FQLEKLDLQSCHL  518 (1011)
Q Consensus       506 ~~L~~L~L~~n~l  518 (1011)
                      ..++.+++.++..
T Consensus       427 ~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  427 SNLKDLDLSGCRV  439 (482)
T ss_pred             hccccCCccCccc
Confidence            5566777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.55  E-value=0.0053  Score=37.20  Aligned_cols=22  Identities=50%  Similarity=0.791  Sum_probs=15.1

Q ss_pred             CCCEEeCcCCcccccCCccccCC
Q 001801          874 SIEVIDFSNNQLSEEIPRSVSNL  896 (1011)
Q Consensus       874 ~L~~L~Ls~N~l~~~ip~~l~~l  896 (1011)
                      +|++|||++|+++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4677888888887 677666543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.37  E-value=0.00018  Score=82.53  Aligned_cols=67  Identities=28%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             ccccCCCCCCEEECCCCCCCCC----CCccccCC-CCCCEeeCCCCCCCCC----CccccCCCCCCCEEeCCCCCC
Q 001801          128 PSLLHFQHLNYLDLSGNSFGGG----IPRFLGSM-GKLKYLNLSGAGFKGM----IPHQLGNLSKLQYLDLVENSE  194 (1011)
Q Consensus       128 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~  194 (1011)
                      ..+....+|..|++++|.+.+.    +-..+... ..|++|++..|.+++.    +...+.....++.++++.|.+
T Consensus       109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            3455566777777777766543    11222222 4566666666666543    344455566666666666644

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.88  E-value=0.0018  Score=74.38  Aligned_cols=68  Identities=25%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             hHhhhCCCCCcEEEccCCCCcccCcc----cccCC-CCCCEEeCCCCCCCC----CcchhccCCCCCcEEEccCCCC
Q 001801          276 LSWVFGLSNLVYLDLGSNDFQGSIPV----GLQNL-TSLRHLDLSYNDFNS----SIPNWLASFSNLVHISLRSNSL  343 (1011)
Q Consensus       276 ~~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l-~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l  343 (1011)
                      ...+.....|+.|++++|.+.+.--.    .+... ..|++|++..|.++.    .+.+.+.....++.++++.|.+
T Consensus       108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            33444555566666666655532111    11111 344555555555443    2333444455555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.18  E-value=0.035  Score=55.15  Aligned_cols=84  Identities=19%  Similarity=0.179  Sum_probs=69.6

Q ss_pred             cceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEE
Q 001801          824 LYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLN  903 (1011)
Q Consensus       824 ~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  903 (1011)
                      ....+.||++.|++- ..-..|.-++.|..||+|.|.+. ..|..++++..+..+++..|..+ ..|.++..++.+..++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            345578999999875 34456777888889999999988 78888999999999999999887 5788899999999999


Q ss_pred             cccCccc
Q 001801          904 LSYNYLS  910 (1011)
Q Consensus       904 ls~N~l~  910 (1011)
                      +-.|+|.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9888865

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.27  E-value=0.37  Score=27.02  Aligned_cols=11  Identities=27%  Similarity=0.628  Sum_probs=3.7

Q ss_pred             CcEEEcCCCcc
Q 001801          699 LVSLNMDGNQF  709 (1011)
Q Consensus       699 L~~L~Ls~N~l  709 (1011)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.76  E-value=0.58  Score=29.53  Aligned_cols=16  Identities=44%  Similarity=0.567  Sum_probs=9.1

Q ss_pred             CCCCEEeCcCCccccc
Q 001801          873 KSIEVIDFSNNQLSEE  888 (1011)
Q Consensus       873 ~~L~~L~Ls~N~l~~~  888 (1011)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.76  E-value=0.58  Score=29.53  Aligned_cols=16  Identities=44%  Similarity=0.567  Sum_probs=9.1

Q ss_pred             CCCCEEeCcCCccccc
Q 001801          873 KSIEVIDFSNNQLSEE  888 (1011)
Q Consensus       873 ~~L~~L~Ls~N~l~~~  888 (1011)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.31  E-value=0.02  Score=56.82  Aligned_cols=89  Identities=20%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCC
Q 001801          251 PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASF  330 (1011)
Q Consensus       251 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  330 (1011)
                      ..+...++.+.||++.|++..   ....|.-++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn---~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~  110 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVN---LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE  110 (326)
T ss_pred             hhhhccceeeeehhhhhHHHh---hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence            445566777778888777654   4455666677778888877766 67777777788888888777776 667888888


Q ss_pred             CCCcEEEccCCCCC
Q 001801          331 SNLVHISLRSNSLQ  344 (1011)
Q Consensus       331 ~~L~~L~L~~n~l~  344 (1011)
                      ++++++++..+.+.
T Consensus       111 ~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFF  124 (326)
T ss_pred             CCcchhhhccCcch
Confidence            88888888887755

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.63  E-value=0.9  Score=28.66  Aligned_cols=21  Identities=29%  Similarity=0.369  Sum_probs=12.9

Q ss_pred             CCCcEEEcCCCccccccChhHh
Q 001801          697 NRLVSLNMDGNQFSGDIPTWIG  718 (1011)
Q Consensus       697 ~~L~~L~Ls~N~l~~~ip~~~~  718 (1011)
                      ++|++|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5565543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.63  E-value=0.9  Score=28.66  Aligned_cols=21  Identities=29%  Similarity=0.369  Sum_probs=12.9

Q ss_pred             CCCcEEEcCCCccccccChhHh
Q 001801          697 NRLVSLNMDGNQFSGDIPTWIG  718 (1011)
Q Consensus       697 ~~L~~L~Ls~N~l~~~ip~~~~  718 (1011)
                      ++|++|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666665 5565543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.32  E-value=0.27  Score=48.36  Aligned_cols=86  Identities=21%  Similarity=0.188  Sum_probs=51.5

Q ss_pred             CCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCC-CchhhHHHhhhccccEEecccCc-CcCCCchhccCCCCCCE
Q 001801          307 TSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ-GSITGFLANLSASIEVLDLSSQQ-LEGQIPRSFGRLCNLRE  384 (1011)
Q Consensus       307 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~  384 (1011)
                      ..++.+|-++..+..+--+.+..++.++.|.+.+|.-- ..--+.+.+..++|+.|++++|. |+..--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            34555666666555544455556666666666665422 12223344444588888888775 55554556777888888


Q ss_pred             EEccCccC
Q 001801          385 ISLSDVKM  392 (1011)
Q Consensus       385 L~L~~n~~  392 (1011)
                      |.+.+-+.
T Consensus       181 L~l~~l~~  188 (221)
T KOG3864|consen  181 LHLYDLPY  188 (221)
T ss_pred             HHhcCchh
Confidence            88876553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.60  E-value=0.31  Score=30.11  Aligned_cols=14  Identities=36%  Similarity=0.577  Sum_probs=5.1

Q ss_pred             cCceeeccCccccc
Q 001801          850 ALRSLNLSYNHFSG  863 (1011)
Q Consensus       850 ~L~~L~Ls~N~l~g  863 (1011)
                      +|+.|+|++|.|++
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            34444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1011
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-40
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-40
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-11
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		1e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		7e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-05
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		2e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 197/715 (27%), Positives = 293/715 (40%), Gaps = 116/715 (16%)
Query: 290 LGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW--LASFSNLVHISLRSNSLQ--G 345
           L ++   GS+  G +   SL  LDLS N  +  +     L S S L  +++ SN+L   G
Sbjct: 81  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 346 SITGFLANLSASIEVLDLSSQQLEGQ--IPRSFGRLC-NLREISLSDVKMSQDIS----- 397
            ++G L     S+EVLDLS+  + G   +       C  L+ +++S  K+S D+      
Sbjct: 140 KVSGGLK--LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 398 --EILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXX 455
             E LD+ S+  S        TG    G  ++                            
Sbjct: 198 NLEFLDVSSNNFS--------TGIPFLGDCSA---------------------------- 221
Query: 456 XXXXERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL-- 513
               + + +S N L G  S   ++  ++L   ++S N     VGP  IPP  L+ L    
Sbjct: 222 ---LQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQF---VGP--IPPLPLKSLQYLS 272
Query: 514 --QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEI 571
             ++   G    F   + + L  LD+S +     VP  F   S        SN+  +GE+
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGEL 331
Query: 572 P--NLSKATGLRTVDLSSNNLSGTLPL----ISFQLESIDLSNNAFSGSISPVLCNGMRG 625
           P   L K  GL+ +DLS N  SG LP     +S  L ++DLS+N FSG I P LC   + 
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 626 ELQVLNLENNSFSGEIPDCWMN----------FLYLRVXXXXXXXXXXXXXXXXXXXXXX 675
            LQ L L+NN F+G+IP    N          F YL                        
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 676 XXXXXQK--------------NSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
                Q+              N L+G IP  LSNC  L  +++  N+ +G+IP WIG + 
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RL 510
Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
            ++ IL L +N F G  P EL    SL  LDL  N  +G IP  +   S  +  ++  G 
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 782 THPGITDCSLYRSC----------------LPRPRSFSDPIEKAFLVMKGKELEYSTILY 825
            +  I +  + + C                L R  S  +P      V  G          
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
            +  +D+S N  SG IP E+  +  L  LNL +N  SG IPD +G ++ + ++D S+N+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 886 SEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGN-DLCGSPLSR 939
              IP+                   G IP   Q ++F  + F+ N  LCG PL R
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 197/715 (27%), Positives = 293/715 (40%), Gaps = 116/715 (16%)
Query: 290 LGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW--LASFSNLVHISLRSNSLQ--G 345
           L ++   GS+  G +   SL  LDLS N  +  +     L S S L  +++ SN+L   G
Sbjct: 84  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 346 SITGFLANLSASIEVLDLSSQQLEGQ--IPRSFGRLC-NLREISLSDVKMSQDIS----- 397
            ++G L     S+EVLDLS+  + G   +       C  L+ +++S  K+S D+      
Sbjct: 143 KVSGGLK--LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 398 --EILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXX 455
             E LD+ S+  S        TG    G  ++                            
Sbjct: 201 NLEFLDVSSNNFS--------TGIPFLGDCSA---------------------------- 224
Query: 456 XXXXERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL-- 513
               + + +S N L G  S   ++  ++L   ++S N     VGP  IPP  L+ L    
Sbjct: 225 ---LQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQF---VGP--IPPLPLKSLQYLS 275
Query: 514 --QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEI 571
             ++   G    F   + + L  LD+S +     VP  F   S        SN+  +GE+
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGEL 334
Query: 572 P--NLSKATGLRTVDLSSNNLSGTLPL----ISFQLESIDLSNNAFSGSISPVLCNGMRG 625
           P   L K  GL+ +DLS N  SG LP     +S  L ++DLS+N FSG I P LC   + 
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 626 ELQVLNLENNSFSGEIPDCWMN----------FLYLRVXXXXXXXXXXXXXXXXXXXXXX 675
            LQ L L+NN F+G+IP    N          F YL                        
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 676 XXXXXQK--------------NSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
                Q+              N L+G IP  LSNC  L  +++  N+ +G+IP WIG + 
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RL 513
Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
            ++ IL L +N F G  P EL    SL  LDL  N  +G IP  +   S  +  ++  G 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 782 THPGITDCSLYRSC----------------LPRPRSFSDPIEKAFLVMKGKELEYSTILY 825
            +  I +  + + C                L R  S  +P      V  G          
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
            +  +D+S N  SG IP E+  +  L  LNL +N  SG IPD +G ++ + ++D S+N+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 886 SEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGN-DLCGSPLSR 939
              IP+                   G IP   Q ++F  + F+ N  LCG PL R
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 104/261 (39%), Gaps = 22/261 (8%)
Query: 689 IPESLSNCNRLVSLNMDG-NQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTS 747
           IP SL+N   L  L + G N   G IP  I  K + +  L +      G  P  L  + +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 748 LQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITD-----CSLYRSCLPRPRSF 802
           L  LD  YN LSG +P  IS+L  +V + +        I D       L+ S        
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 803 SDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFS 862
           +  I   F  +             +A +DLS+N   G+  V        + ++L+ N  +
Sbjct: 187 TGKIPPTFANLN------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 863 GRIPDSIGAMKSIEVIDFSNNQLSEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSF 922
             +   +G  K++  +D  NN++   +P+                   GEIP    LQ F
Sbjct: 235 FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 923 DASCFIGND-LCGSPLSRNCT 942
           D S +  N  LCGSPL   CT
Sbjct: 294 DVSAYANNKCLCGSPLPA-CT 313

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLS--GAGFKGMIPHQLGNLSKLQYLD 188
           L  + L  L  + N  G         +  L++L+LS  G  FKG         + L+YLD
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHF 248
           L  N  + +   S   GL  L+HLD    NL +  ++S+ ++              + H 
Sbjct: 380 LSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHT 431
Query: 249 HPPPIVN-----ISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVG 302
           H     N     +SS+ VL ++ N F +N   L  +F  L NL +LDL     +   P  
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 303 LQNLTSLRHLDLSYNDF 319
             +L+SL+ L++S+N+F
Sbjct: 490 FNSLSSLQVLNMSHNNF 506

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 139 LDLSGNSFGGGIPRFLGSMGKLKYLNLS--GAGFKGMIPHQLGNLSKLQYLDLVENSELY 196
           L+L  N            + +L  L+LS  G  FKG         + L+YLDL  N  + 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 197 VDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVN- 255
           +   S   GL  L+HLD    NL +  ++S+ ++              + H H     N 
Sbjct: 93  MS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHTHTRVAFNG 144
Query: 256 ----ISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
               +SS+ VL ++ N F +N   L  +F  L NL +LDL     +   P    +L+SL+
Sbjct: 145 IFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 311 HLDLSYNDF 319
            L++S+N+F
Sbjct: 203 VLNMSHNNF 211

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 20/219 (9%)
Query: 131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLS--GAGFKGMIPHQLGNLSKLQYLD 188
           L  + L  L  + N  G         +  L++L+LS  G  FKG         + L+YLD
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHF 248
           L  N  + +   S   GL  L+HLD    NL +  ++S+ ++              + H 
Sbjct: 380 LSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHT 431
Query: 249 HPPPIVN-----ISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVG 302
           H     N     +SS+ VL ++ N F +N   L  +F  L NL +LDL     +   P  
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
             +L+SL+ L+++ N   S         ++L  I L +N
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 276 LSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLV 334
           +S +  L+NL YL L  N  Q S+P G+   LT+L+ L L  N   S         +NL 
Sbjct: 78  ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 335 HISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQ 394
           ++ L  N LQ    G    L+ ++  LDL + QL+      F +L  L+++SL+D ++  
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLT-NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 395 DISEILDIFSS 405
               + D  +S
Sbjct: 196 VPDGVFDRLTS 206

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 43/179 (24%)
Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXX 237
           L NL+K+  L+L  N    + N+S + GL  ++ LDL    +                  
Sbjct: 87  LKNLTKITELELSGNP---LKNVSAIAGLQSIKTLDLTSTQITDV--------------- 128
Query: 238 XXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
                         P+  +S++ VL L  NQ       +S + GL+NL YL +G+N    
Sbjct: 129 -------------TPLAGLSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNNQVND 171
Query: 298 SIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS 355
             P+  L  LT+LR  D   +D +      LAS  NL+ + L+ N  Q S    LANLS
Sbjct: 172 LTPLANLSKLTTLRADDNKISDISP-----LASLPNLIEVHLKDN--QISDVSPLANLS 223

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 276 LSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLV 334
           +S +  L+NL YL L  N  Q S+P G+   LT+L+ L L  N   S         +NL 
Sbjct: 78  ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 335 HISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISL 387
           +++L  N LQ    G    L+   E LDLS  QL+      F +L  L+++ L
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTE-LDLSYNQLQSLPEGVFDKLTQLKDLRL 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1011
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-180
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-79
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-72
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  542 bits (1399), Expect = e-180
 Identities = 220/941 (23%), Positives = 339/941 (36%), Gaps = 225/941 (23%)

Query: 31  HCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPL 90
             +  E   L+ FK  L D  N L  W+      + C + GV C +    V  +      
Sbjct: 8   QSLYREIHQLISFKDVLPDK-NLLPDWSS---NKNPCTFDGVTCRD--DKVTSI------ 55

Query: 91  NHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGI 150
                                                        L+   L+       +
Sbjct: 56  --------------------------------------------DLSSKPLNV--GFSAV 69

Query: 151 PRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQ 210
              L S+  L+ L LS +   G +       + L  LDL  N                  
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN------------------ 110

Query: 211 HLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIV-NISSISVLDLSSNQF 269
                  +L        ++ S S L+ L +S   LD          ++S+ VLDLS+N  
Sbjct: 111 -------SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 270 -DQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLA 328
              N +      G   L +L +  N   G + V      +L  LD+S N+F++ IP +L 
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLG 220

Query: 329 SFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLS 388
             S L H+ +  N L G  +  ++  +  +++L++SS Q  G IP     L +L+ +SL+
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277

Query: 389 DVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQI-GHFKSLDSLFLSHNSISG 447
           +                              K  G +   + G   +L  L LS N   G
Sbjct: 278 E-----------------------------NKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 448 LIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQ 507
            +P   G  S LE + LS+N   G L    L  +  L   D+S N  +            
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS------------ 356

Query: 508 LEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRI 567
                                                 +P      S  L  L+ S++  
Sbjct: 357 ------------------------------------GELPESLTNLSASLLTLDLSSNNF 380

Query: 568 NGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGEL 627
           +G I            +L  N  +         L+ + L NN F+G I P L N    EL
Sbjct: 381 SGPILP----------NLCQNPKN--------TLQELYLQNNGFTGKIPPTLSN--CSEL 420

Query: 628 QVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSG 687
             L+L  N  SG IP    +   LR L L  N   G +P  L  + +L  L L  N L+G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 688 RIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTS 747
            IP  LSNC  L  +++  N+ +G+IP WIG +  ++ IL L +N F G  P EL    S
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRS 539

Query: 748 LQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIE 807
           L  LDL  N  +G IP  +   S  +  ++  G  +  I +  + + C            
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH---------GA 590

Query: 808 KAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPD 867
              L  +G   E    L      +++   + G       +  ++  L++SYN  SG IP 
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 868 SIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS----------- 916
            IG+M  + +++  +N +S  IP  V +L  LN+L+LS N L G IP +           
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 917 -------------TQLQSFDASCFIGND-LCGSPLSRNCTE 943
                         Q ++F  + F+ N  LCG PL R    
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  294 bits (755), Expect = 2e-87
 Identities = 122/655 (18%), Positives = 220/655 (33%), Gaps = 58/655 (8%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
             ++  L+L+ N              +L  L++       + P     L  L+ L+L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 193 SELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
                  LS L        + L  L L   ++ K  +         +L  L LS   L  
Sbjct: 84  ------ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSS 135

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
                 V + ++  L LS+N+          +F  S+L  L+L SN  +   P     + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 308 SLRHLDLSYNDFNSSIPNWLASF---SNLVHISLRSNSLQGSITGFLANLSA-SIEVLDL 363
            L  L L+      S+   L      +++ ++SL ++ L  +       L   ++ +LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 364 SSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFG 423
           S   L      SF  L  L    L    +    S          +  +   ++       
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS---HSLHGLFN--VRYLNLKR----- 305

Query: 424 HLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSK 483
                     S     +S  S+  +   S   L  LE + + +N + G +       L  
Sbjct: 306 ----------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLIN 354

Query: 484 LVSFDVSGNALTLKVGPDWI----PPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISR 539
           L    +S +  +L+   +          L  L+L    +             L  LD+  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 540 SGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLIS 598
           + I   +  + W     ++ +  S ++      N  +    L+ + L    L       S
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 599 F-----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS--------GEIPDCW 645
                  L  +DLSNN  +     +L    +  L++L+L++N+ +        G      
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEK--LEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 646 MNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMD 705
               +L +LNL +N F          L  L ++ L  N+L+       +N   L SLN+ 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 706 GNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
            N  +       G  F ++  L++R N FD    +   F+  +         LS 
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  291 bits (746), Expect = 3e-86
 Identities = 142/712 (19%), Positives = 237/712 (33%), Gaps = 119/712 (16%)

Query: 234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGS 292
           S  V   S  +L    P  +   ++I+VL+L+ NQ      + +  F   S L  LD+G 
Sbjct: 5   SHEVADCSHLKLTQV-PDDLP--TNITVLNLTHNQL---RRLPAANFTRYSQLTSLDVGF 58

Query: 293 NDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLA 352
           N      P   Q L  L+ L+L +N+ +       A  +NL  + L SNS+Q        
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 353 NLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLE 412
               ++  LDLS   L      +  +L NL+E+ LS+ K+    +   +      +  L+
Sbjct: 119 KQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ---ALKSEELDIFANSSLK 174

Query: 413 SWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLG---GLSSLERVVLSNNTL 469
             +++  +I             L  LFL++  +   +   L      +S+  + LSN+ L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 470 KGYLSEIHLANL--SKLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWL 526
               S      L  + L   D+S N L   VG D      QLE   L+  ++   F   L
Sbjct: 235 ST-TSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 527 LSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDL 585
                + YL++ RS                    + S + +             L  +++
Sbjct: 293 HGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 586 SSNNLSGTLPLISFQ----LESIDLSNNAFSGS--ISPVLCNGMRGELQVLNLENNSFSG 639
             N++ G +    F     L+ + LSN+  S     +    +     L +LNL  N  S 
Sbjct: 337 EDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPESLSNCNR 698
              D +    +L VL+LG N     L       L ++  ++L  N        S +    
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 699 LVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNL 758
           L  L +                      ++   + F          L +L ILDL  NN+
Sbjct: 456 LQRLMLRRVALKN---------------VDSSPSPFQP--------LRNLTILDLSNNNI 492

Query: 759 SGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKEL 818
           +      +  L  +  +D  L   +                                   
Sbjct: 493 ANINDDMLEGLEKLEILD--LQHNN----------------------------------- 515

Query: 819 EYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVI 878
                     L  L K+   G     +  L  L  LNL  N F     +    +  +++I
Sbjct: 516 ----------LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 879 DFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS-----TQLQSFDAS 925
           D   N L+       +N   L  LNL  N ++             L   D  
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  289 bits (741), Expect = 1e-85
 Identities = 125/661 (18%), Positives = 220/661 (33%), Gaps = 73/661 (11%)

Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSEL 195
               D S       +P  L +   +  LNL+    + +        S+L  LD+  N   
Sbjct: 6   HEVADCSHLKL-TQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN--- 59

Query: 196 YVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVN 255
               +S L                            L  L+VL L   +L          
Sbjct: 60  ---TISKLE---------------------PELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS 315
            ++++ L L SN      +  +      NL+ LDL  N    +       L +L+ L LS
Sbjct: 96  CTNLTELHLMSNSI--QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 316 YNDFNSSIPNWLASFSN--LVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIP 373
            N   +     L  F+N  L  + L SN ++    G    +   +  L L++ QL   + 
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLT 212

Query: 374 RSFG---RLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIG 430
                     ++R +SLS+ ++S   +     F       L   D++   +         
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLS---TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 431 HFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHL--------ANLS 482
               L+  FL +N+I  L   SL GL ++  + L  +  K  +S   L          L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 483 KLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFP----FWLLSQNVLGYLDI 537
            L   ++  N +   +  +       L+ L L +            F  L+ + L  L++
Sbjct: 330 CLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 538 SRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLP 595
           +++ I   + +  +     L  L+   + I  E+          +  + LS N     L 
Sbjct: 389 TKNKIS-KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LT 446

Query: 596 LISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYL 651
             SF     L+ + L   A     S          L +L+L NN+ +    D       L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 652 RVLNLGNNNFT--------GNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLN 703
            +L+L +NN          G     L  L  L +L+L+ N       E   +   L  ++
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 704 MDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELC-FLTSLQILDLGYNNLSGAI 762
           +  N  +    +       S+  LNL+ N+              +L  LD+ +N      
Sbjct: 567 LGLNNLNTLPASVFN-NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 763 P 763
            
Sbjct: 626 E 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  276 bits (709), Expect = 5e-81
 Identities = 122/616 (19%), Positives = 232/616 (37%), Gaps = 54/616 (8%)

Query: 184 LQYLDLVENSELYVDNLSWLPG--LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLS 241
            +  D           L+ +P    + +  L+L    L +    +      S L  L + 
Sbjct: 6   HEVADCSHL------KLTQVPDDLPTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVG 57

Query: 242 GCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPV 301
              +    P     +  + VL+L  N+   + L        +NL  L L SN  Q     
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 302 GLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS-ASIEV 360
                 +L  LDLS+N  +S+         NL  + L +N +Q   +  L   + +S++ 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 361 LDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCK 420
           L+LSS Q++   P  F  +  L  + L++V++   ++E L +  +  S  + +  ++  +
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS--IRNLSLSNSQ 233

Query: 421 IFGHLTSQIGHFK--SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHL 478
           +     +     K  +L  L LS+N+++ +   S   L  LE   L  N ++  L    L
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSL 292

Query: 479 ANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDIS 538
             L  +   ++  +                 K  +    L     F       L +L++ 
Sbjct: 293 HGLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 539 RSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLS-----KATGLRTVDLSSNNLSGT 593
            + I   + +  +     L +L+ SNS  +              + L  ++L+ N +S  
Sbjct: 338 DNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 594 LPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFL 649
               +F     LE +DL  N     ++     G+   +  + L  N +     + +    
Sbjct: 397 ESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVP 454

Query: 650 YLRVLNLGNNNFTG--NLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGN 707
            L+ L L         + P     L +LT+L L  N+++    + L    +L  L++  N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 708 QFS-------GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
             +          P +  +  S + ILNL SN FD         L  L+I+DLG NNL+ 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 761 AIPKCISNLSAMVTVD 776
                 +N  ++ +++
Sbjct: 575 LPASVFNNQVSLKSLN 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (568), Expect = 9e-62
 Identities = 109/599 (18%), Positives = 208/599 (34%), Gaps = 68/599 (11%)

Query: 380 CNLREISLSDVKMSQDISEI-LDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSL 438
            +      S       ++++  D+ ++     +   ++T  ++     +    +  L SL
Sbjct: 4   VSHEVADCSH----LKLTQVPDDLPTN-----ITVLNLTHNQLRRLPAANFTRYSQLTSL 54

Query: 439 FLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKV 498
            +  N+IS L P     L  L+ + L +N L   LS+   A  + L    +  N++  K+
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQ-KI 112

Query: 499 GPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF-WEASPQ 556
             +       L  LDL    L  T     +    L  L +S + IQ          A+  
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 557 LYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISF------QLESIDLSNN 609
           L  L  S+++I    P        L  + L++  L  +L            + ++ LSN+
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 610 AFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL 669
             S + +          L +L+L  N+ +    D +     L    L  NN       SL
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 670 GSLGSLTLLHLQKN---------SLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEK 720
             L ++  L+L+++         SL      S      L  LNM+ N   G         
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-G 351

Query: 721 FSSMVILNLRSNIFDGQFPTELCF----LTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
             ++  L+L ++    +  T   F     + L IL+L  N +S       S L  +  +D
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 777 YPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKG---KELEYSTILYLVAL--ID 831
                    +    + +      + +        + +      +L  ++   + +L  + 
Sbjct: 412 ---------LGLNEIGQE--LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 832 LSKNNFSG--EIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE-- 887
           L +         P     L  L  L+LS N+ +    D +  ++ +E++D  +N L+   
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 888 ------EIPRSVSNLTFLNLLNLSYNYLSGEIPTS----TQLQSFDASCFIGNDLCGSP 936
                      +  L+ L++LNL  N              +L+  D      N+L   P
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG---LNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  158 bits (401), Expect = 3e-40
 Identities = 68/383 (17%), Positives = 113/383 (29%), Gaps = 76/383 (19%)

Query: 117 YERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSG--AGFKGMI 174
              +      + S    + L +L++  N   G        +  LKYL+LS      + + 
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 175 PHQLGNL--SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSL 232
                +L  S L  L+L +N  +          L  L+ LDLG   +G+          L
Sbjct: 372 NETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ-EWRGL 429

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGS 292
            ++  + LS  +           + S+  L L            S    L NL  LDL +
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 293 NDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLA 352
           N+        L+ L  L  LDL +N+                   L  ++  G    FL 
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLA----------------RLWKHANPGGPIYFLK 533

Query: 353 NLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLE 412
            LS  + +L+L S   +      F  L  L+                             
Sbjct: 534 GLS-HLHILNLESNGFDEIPVEVFKDLFELKI---------------------------- 564

Query: 413 SWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGY 472
                                    + L  N+++ L  S      SL+ + L  N +   
Sbjct: 565 -------------------------IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 473 LSEIHLANLSKLVSFDVSGNALT 495
             ++       L   D+  N   
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 1e-09
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 11/155 (7%)

Query: 122 FGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
             G     L    HL+ L+L  N F          + +LK ++L       +      N 
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583

Query: 182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLG---KAFDWSLAINSLSSLRVL 238
             L+ L+L +N    V+   + P    L  LD+         ++  W +   + +   + 
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIP 643

Query: 239 RLSG---CQLDHFHPPPIVNISSISVLDLSSNQFD 270
            LS    C       PP  +   + + D SS +  
Sbjct: 644 ELSSHYLCNT-----PPHYHGFPVRLFDTSSCKDS 673

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  270 bits (692), Expect = 2e-79
 Identities = 116/593 (19%), Positives = 214/593 (36%), Gaps = 38/593 (6%)

Query: 199 NLSWLPG--LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNI 256
           N   +P       ++LDL    L     +S    S   L+VL LS C++         ++
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSY 316
           S +S L L+ N     SL L    GLS+L  L     +        + +L +L+ L++++
Sbjct: 76  SHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 317 NDFNS-SIPNWLASFSNLVHISLRSNSLQGSIT---GFLANLSASIEVLDLSSQQLEGQI 372
           N   S  +P + ++ +NL H+ L SN +Q         L  +      LDLS   +    
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 373 PRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS-QIGH 431
           P +F  +  L +++L +   S ++ +            +    +   +  G+L       
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 432 FKSLDSLFLSHNSISGL------IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLV 485
            + L +L +    ++ L      I      L+++    L + T++        +      
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQ 307

Query: 486 SFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT 545
             ++             +    L++L   S   G  F    L    L +LD+SR+G+   
Sbjct: 308 HLELVNCKFG---QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS--LEFLDLSRNGLSFK 362

Query: 546 -VPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQ---- 600
              ++    +  L +L+ S + +     N      L  +D   +NL        F     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 601 LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEI-PDCWMNFLYLRVLNLGNN 659
           L  +D+S+     + + +        L+VL +  NSF     PD +     L  L+L   
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 660 NFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGE 719
                 P +  SL SL +L++  N+            N L  L+   N         +  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 720 KFSSMVILNLRSNIFDGQFPTE--LCFLTSLQILDLGYNNLSGAIPKCISNLS 770
             SS+  LNL  N F      +  L ++   + L +    +  A P     + 
Sbjct: 541 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  251 bits (642), Expect = 2e-72
 Identities = 114/658 (17%), Positives = 212/658 (32%), Gaps = 101/658 (15%)

Query: 257 SSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS 315
            S   LDLS N       + S+ F     L  LDL   + Q       Q+L+ L  L L+
Sbjct: 28  FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 316 YNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEG-QIPR 374
            N   S      +  S+L  +     +L       + +L  +++ L+++   ++  ++P 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPE 143

Query: 375 SFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKS 434
            F  L NL  + LS                               KI     + +     
Sbjct: 144 YFSNLTNLEHLDLS-----------------------------SNKIQSIYCTDLRVLHQ 174

Query: 435 LD----SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS 490
           +     SL LS N ++ + P +   +  L ++ L NN     + +  +  L+ L    + 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 491 GNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
                 +   +      LE L               + +  L YLD     I D      
Sbjct: 234 LGEFRNEGNLEKFDKSALEGL-----------CNLTIEEFRLAYLDYYLDDIIDL----- 277

Query: 551 WEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNA 610
           +     +   +  +  I   + + S   G + ++L +        L    L+ +  ++N 
Sbjct: 278 FNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 611 FSGSISPVLCNGMRGELQVLNLENN--SFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPS 668
              + S V        L+ L+L  N  SF G           L+ L+L  N     +  +
Sbjct: 337 GGNAFSEVDL----PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391

Query: 669 LGSLGSLTLLHLQKNSLSGRIPES-LSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727
              L  L  L  Q ++L      S   +   L+ L++                 SS+ +L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVL 450

Query: 728 NLRSNIFDGQFPTE-LCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGI 786
            +  N F   F  +    L +L  LDL    L    P   ++LS++  ++  +   +   
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN--MSHNN--- 505

Query: 787 TDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVT 846
                          F       +  +    L+          +D S N+       E+ 
Sbjct: 506 ---------------FFSLDTFPYKCLN--SLQV---------LDYSLNHIMTSKKQELQ 539

Query: 847 DLV-ALRSLNLSYNHFSGRIP--DSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNL 901
               +L  LNL+ N F+        +  +K    +     ++    P     +  L+L
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  228 bits (583), Expect = 2e-64
 Identities = 107/655 (16%), Positives = 187/655 (28%), Gaps = 143/655 (21%)

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
            +   LDL  N  +        +   L+ LDLS  +  +       S S+L  + L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 343 LQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDI 402
           +Q    G  + LS S++ L      L        G L  L+E++++   +          
Sbjct: 88  IQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ--------- 137

Query: 403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERV 462
                                 L     +  +L+ L LS N I  +  + L  L  +  +
Sbjct: 138 -------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 463 VLSNNTLKGYLSEIHLANLS--KLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQSCHLG 519
            LS +     ++ I        +L    +  N  +L V    I     LE   L      
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 520 PTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATG 579
                    ++ L  L                     L    F                 
Sbjct: 239 NEGNLEKFDKSALEGL-------------------CNLTIEEFR---------------- 263

Query: 580 LRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
           L  +D   +++      ++  + S  L +             G     Q L L N  F  
Sbjct: 264 LAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIERVKDFSYNFG----WQHLELVNCKFGQ 318

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS--GRIPESLSNCN 697
                  +   L   +    N       S   L SL  L L +N LS  G   +S     
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 698 RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN 757
            L  L++  N                                +    L  L+ LD  ++N
Sbjct: 374 SLKYLDLSFNGVIT--------------------------MSSNFLGLEQLEHLDFQHSN 407

Query: 758 LSGAIPK-CISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK 816
           L          +L  ++ +D  +  TH                          F  +   
Sbjct: 408 LKQMSEFSVFLSLRNLIYLD--ISHTH------------------TRVAFNGIFNGLS-- 445

Query: 817 ELEYSTILYLVALIDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSI 875
            LE          + ++ N+F      ++ T+L  L  L+LS        P +  ++ S+
Sbjct: 446 SLEV---------LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 876 EVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS-----TQLQSFDAS 925
           +V++ S+N            L  L +L+ S N++            + L   + +
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  199 bits (507), Expect = 2e-54
 Identities = 98/578 (16%), Positives = 168/578 (29%), Gaps = 83/578 (14%)

Query: 121 KFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGM-IPHQLG 179
                   +      L  L     +        +G +  LK LN++    +   +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 180 NLSKLQYLDLVEN--SELYVDNLSWLPGLSLLQ-HLDLGGVNLGKAFDWSLAINSLSSLR 236
           NL+ L++LDL  N    +Y  +L  L  + LL   LDL    +      +        L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---KEIRLH 203

Query: 237 VLRLSGCQLDHFHPP-PIVNISSISVLDLSSNQF-DQNSLVLSWVFGLSNLVYLDLGSND 294
            L L             I  ++ + V  L   +F ++ +L       L  L  L +    
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 295 ------FQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSIT 348
                 +   I      LT++    L             +      H+ L +       T
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT 321

Query: 349 GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCIS 408
             L +L        L+    +G    S   L +L  + LS   +S               
Sbjct: 322 LKLKSL------KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS--------------- 360

Query: 409 DRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNT 468
                         G  +       SL  L LS N +   + S+  GL  LE +   ++ 
Sbjct: 361 ------------FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 469 LKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLS 528
           LK         +L  L+  D+S                    L                 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTR------VAFNGIFNGL----------------- 444

Query: 529 QNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSS 587
            + L  L ++ +  Q+      +     L FL+ S  ++    P   +  + L+ +++S 
Sbjct: 445 -SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 588 NNLSGTLPLI---SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDC 644
           NN              L+ +D S N    S    L +     L  LNL  N F+      
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFACTCEHQ 562

Query: 645 WM--NFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHL 680
                    R L +         P     +  +  L++
Sbjct: 563 SFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (486), Expect = 2e-51
 Identities = 93/530 (17%), Positives = 178/530 (33%), Gaps = 71/530 (13%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
             S  +L LS N +  L   S      L+ + LS   ++  + +    +LS L +  ++G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 492 NALTLKVGPDWI-PPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
           N +   +          L+KL     +L     F +     L  L+++ + IQ      +
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 551 WEASPQLYFLNFSNSRINGEIPN-LSKATGLR----TVDLSSNNLSGTLPLI--SFQLES 603
           +     L  L+ S+++I       L     +     ++DLS N ++   P      +L  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204

Query: 604 IDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE------IPDCWMNFLYLRVLNL- 656
           + L NN  S ++      G+ G L+V  L    F  E                L +    
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAG-LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 657 --GNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIP 714
               + +  ++      L +++   L   ++     +  S       L +   +F    P
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ-FP 320

Query: 715 TWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS--GAIPKCISNLSAM 772
           T   +    +   + +              L SL+ LDL  N LS  G   +     +++
Sbjct: 321 TLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 773 VTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDL 832
             +D         ++   +         +F          +  ++LE+         +D 
Sbjct: 376 KYLD---------LSFNGVITM----SSNF----------LGLEQLEH---------LDF 403

Query: 833 SKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPR 891
             +N        V   L  L  L++S+ H           + S+EV+  + N   E    
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 892 SV-SNLTFLNLLNLSYNYLSGEIPTS----TQLQSFDASCFIGNDLCGSP 936
            + + L  L  L+LS   L    PT+    + LQ  + S    N+     
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS---HNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (357), Expect = 5e-35
 Identities = 56/349 (16%), Positives = 104/349 (29%), Gaps = 35/349 (10%)

Query: 582 TVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEI 641
           T      N       + F  +++DLS N      S    +    ELQVL+L         
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIE 68

Query: 642 PDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVS 701
              + +  +L  L L  N        +   L SL  L   + +L+      + +   L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQI----LDLGYNN 757
           LN+  N              +++  L+L SN     + T+L  L  + +    LDL  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 758 LSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE 817
           ++   P     +                +   +L  +        S  + K  +    + 
Sbjct: 189 MNFIQPGAFKEIR---------------LHKLTLRNN------FDSLNVMKTCI----QG 223

Query: 818 LEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNH---FSGRIPDSIGAMKS 874
           L    +  LV     ++ N        +  L  L        +   +   I D    + +
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 875 IEVIDFSNNQLSEEIPRS-VSNLTFLNLLNLSYNYLSGEIPTSTQLQSF 922
           +      +  +      S       L L+N  +         S +  +F
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  253 bits (648), Expect = 5e-73
 Identities = 91/654 (13%), Positives = 173/654 (26%), Gaps = 134/654 (20%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDF----NSSIPNWLASFSNLVHIS 337
              +  L L      G +P  +  LT L  L L  +          P  +++  +     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 338 LRSNSLQGSITGFLANLSAS-IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDI 396
                 Q +   +      S +    ++S   +  I +S        +I       S +I
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL----SNNI 195

Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL 456
           + +           L  + M           +    ++       +             L
Sbjct: 196 TFVSKAVMRLTK--LRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDNL 248

Query: 457 SSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSC 516
             L  V + N      L    L  L ++   +V+ N                     +  
Sbjct: 249 KDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGI----------------SGEQL 291

Query: 517 HLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSK 576
                          +  + I  +                    N     +   +  + K
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYN--------------------NLKTFPVETSLQKMKK 331

Query: 577 ATGLRTVDLSSNNLSGTLPLIS--FQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLEN 634
              L  ++   N L G LP      +L S++L+ N  +  I    C     +++ L+  +
Sbjct: 332 ---LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTE-QVENLSFAH 386

Query: 635 NSFSGEIPD--CWMNFLYLRVLNLGNNNFTG-------NLPPSLGSLGSLTLLHLQKNSL 685
           N     IP+     +   +  ++   N            L P+     +++ ++L  N +
Sbjct: 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 686 SGRIPESLSNCNRLVSLNMDGNQFSG-------DIPTWIGEKFSSMVILNLRSNIFDGQF 738
           S    E  S  + L S+N+ GN  +        D           +  ++LR N      
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NTYLLTSIDLRFNKLTK-L 503

Query: 739 PTELCF--LTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCL 796
             +     L  L  +DL YN+ S   P    N S +                        
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL------------------------ 538

Query: 797 PRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNL 856
                                        +    D   N    E P  +T   +L  L +
Sbjct: 539 -------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 857 SYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
             N     + + I    +I V+D  +N         V       +  L Y+   
Sbjct: 574 GSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  249 bits (639), Expect = 8e-72
 Identities = 91/650 (14%), Positives = 203/650 (31%), Gaps = 103/650 (15%)

Query: 140 DLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDN 199
           +   + +G      L S G++  L+L G G  G +P  +G L++L+ L L  + E   + 
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 200 LSW---LPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNI 256
           L     +      +      ++  K F         S L    ++               
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSY 316
              + +   SN                               +   +  LT LR   +  
Sbjct: 183 LKDTQIGQLSNNI---------------------------TFVSKAVMRLTKLRQFYMGN 215

Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF 376
           + F +             + +        +      NL   +  +++ +     ++P   
Sbjct: 216 SPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFL 269

Query: 377 GRLCNLREISLSD---VKMSQDISEILDIFSSCISDRLESWDMTGCKIF-GHLTSQIGHF 432
             L  ++ I+++    +   Q   +   +  + + ++++   +    +    + + +   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 433 KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
           K L  L   +N + G +P + G    L  + L+ N +    +        ++ +   + N
Sbjct: 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANF-CGFTEQVENLSFAHN 387

Query: 493 ALTLKVGPDWIPPF-------QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT 545
            L        IP          +  +D     +G       +       LD +       
Sbjct: 388 KLKY------IPNIFDAKSVSVMSAIDFSYNEIG------SVDGKNFDPLDPT------- 428

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESI 604
                      +  +N SN++I+       S  + L +++L  N L+  +P  S + E+ 
Sbjct: 429 -----PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENE 482

Query: 605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWM-NFLYLRVLNLGNNNFTG 663
           +  N                  L  ++L  N  +    D       YL  ++L  N+F+ 
Sbjct: 483 NFKN----------TYL-----LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 664 NLPPSLGSLGSLTLLHLQ------KNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWI 717
             P    +  +L    ++       N      PE ++ C  L  L +  N     +   I
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI 585

Query: 718 GEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCIS 767
                ++ +L+++ N       + +C      +  L Y+     I  C +
Sbjct: 586 ---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD-IRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  212 bits (541), Expect = 1e-58
 Identities = 85/641 (13%), Positives = 179/641 (27%), Gaps = 106/641 (16%)

Query: 324 PNWLASFSNLVHISL----RSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRL 379
            NW          +     +   + G+  G   N +  +  L L      G++P + G+L
Sbjct: 45  KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL 104

Query: 380 CNLREISLSDVKMS-QDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIG--HFKSLD 436
             L  ++L        +        S+ +S   E                     F  L 
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMS--DEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 437 SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTL 496
              ++ +     I  S        ++   +N +      +    L+KL  F +  +    
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV--MRLTKLRQFYMGNSPFV- 219

Query: 497 KVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQ 556
                       E  + +                     D+    ++             
Sbjct: 220 ----AENICEAWENENSEYAQQ-------------YKTEDLKWDNLK------------D 250

Query: 557 LYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSI 615
           L  +   N     ++P  L     ++ ++++ N       L                   
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-------------DWQA 297

Query: 616 SPVLCNGMRGELQVLNLENNSF-SGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGS 674
                 G   ++Q++ +  N+  +  +         L +L    N   G   P+ GS   
Sbjct: 298 LADAPVG--EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIK 354

Query: 675 LTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIF 734
           L  L+L  N ++           ++ +L+   N+       +  +  S M  ++   N  
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 735 DG-------QFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787
                              ++  ++L  N +S    +  S  S + +++         + 
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN---------LM 465

Query: 788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVE--V 845
              L  + +P+     +        +    L           IDL  N  +  +  +   
Sbjct: 466 GNML--TEIPKNSLKDENENFKNTYL----LTS---------IDLRFNKLTK-LSDDFRA 509

Query: 846 TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVI------DFSNNQLSEEIPRSVSNLTFL 899
           T L  L  ++LSYN FS   P       +++        D   N+   E P  ++    L
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 900 NLLNLSYNYLSGEIPTS--TQLQSFDASCFIGNDLCGSPLS 938
             L +  N +  ++       +   D      N      LS
Sbjct: 569 TQLQIGSNDIR-KVNEKITPNISVLDIK---DNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  159 bits (405), Expect = 6e-41
 Identities = 58/417 (13%), Positives = 136/417 (32%), Gaps = 52/417 (12%)

Query: 118 ERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQ 177
           E ++     +    + + L  +++        +P FL ++ +++ +N++           
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQL 291

Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRV 237
             +                   L+  P    +Q + +G  NL K F    ++  +  L +
Sbjct: 292 KDDWQ----------------ALADAPVGEKIQIIYIGYNNL-KTFPVETSLQKMKKLGM 334

Query: 238 LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
           L     QL+    P   +   ++ L+L+ NQ     +  ++      +  L    N  + 
Sbjct: 335 LECLYNQLEGK-LPAFGSEIKLASLNLAYNQI--TEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 298 -SIPVGLQNLTSLRHLDLSYNDFNS-------SIPNWLASFSNLVHISLRSNSLQGSITG 349
                  ++++ +  +D SYN+  S        +        N+  I+L +N +      
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 350 FLANLSASIEVLDLSSQQLEG-------QIPRSFGRLCNLREISLSDVKMSQDISEILDI 402
             +  S  +  ++L    L             +F     L  I L   K    ++++ D 
Sbjct: 452 LFSTGS-PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK----LTKLSDD 506

Query: 403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH------NSISGLIPSSLGGL 456
           F +     L   D++    F    +Q  +  +L    + +      N      P  +   
Sbjct: 507 FRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 457 SSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL 513
            SL ++ + +N     + +++      +   D+  N           P  +     L
Sbjct: 566 PSLTQLQIGSND----IRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (360), Expect = 3e-35
 Identities = 47/353 (13%), Positives = 99/353 (28%), Gaps = 71/353 (20%)

Query: 602 ESIDLSNNAFSGSISPVLCN------------------GMRGELQVLNLENNSFSGEIPD 643
           ++++  N +  G  +    N                     G +  L+LE    SG +PD
Sbjct: 40  DALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD 99

Query: 644 CWMNFLYLRVLNLGNNNFTGN----LPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCN-- 697
                  L VL LG++    N     P  + +  S       +        +     +  
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 698 RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN 757
            L+   ++ +     I             +   SN         +  LT L+   +G + 
Sbjct: 160 DLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217

Query: 758 LSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE 817
                                             Y+         ++ ++   L    K+
Sbjct: 218 FVAENICEAWENEN--------------SEYAQQYK---------TEDLKWDNL----KD 250

Query: 818 LEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHF--------SGRIPDSI 869
           L           +++       ++P  +  L  ++ +N++ N            +     
Sbjct: 251 LTD---------VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 870 GAMKSIEVIDFSNNQLSE-EIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQS 921
              + I++I    N L    +  S+  +  L +L   YN L G++P       
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  235 bits (601), Expect = 4e-70
 Identities = 84/315 (26%), Positives = 140/315 (44%), Gaps = 42/315 (13%)

Query: 634 NNSFSGEIPDCWMNFLYLRVLNLGNNNFTG--NLPPSLGSLGSLTLLHLQK-NSLSGRIP 690
           N ++ G + D       +  L+L   N      +P SL +L  L  L++   N+L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 691 ESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQI 750
            +++   +L  L +     SG IP ++  +  ++V L+   N   G  P  +  L +L  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 751 LDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCL--PRPRSFSDPIEK 808
           +    N +SGAIP    + S + T               ++ R+ L    P +F++    
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTS-------------MTISRNRLTGKIPPTFAN---- 196

Query: 809 AFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDS 868
                          L L  + DLS+N   G+  V        + ++L+ N  +  +   
Sbjct: 197 ---------------LNLAFV-DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K 239

Query: 869 IGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFI 928
           +G  K++  +D  NN++   +P+ ++ L FL+ LN+S+N L GEIP    LQ FD S + 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

Query: 929 GND-LCGSPLSRNCT 942
            N  LCGSPL   CT
Sbjct: 300 NNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  197 bits (504), Expect = 9e-57
 Identities = 77/308 (25%), Positives = 120/308 (38%), Gaps = 42/308 (13%)

Query: 582 TVDLSSNNLSGTLP---LISFQLESIDLSNNAFSGS--ISPVLCNGMRGELQVLNLEN-N 635
           T D  +    G L      ++++ ++DLS         I   L N     L  L +   N
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY--LNFLYIGGIN 87

Query: 636 SFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSN 695
           +  G IP        L  L + + N +G +P  L  + +L  L    N+LSG +P S+S+
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 696 CNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGY 755
              LV +  DGN+ SG IP   G        + +  N   G+ P     L +L  +DL  
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 756 NNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKG 815
           N L G       +      +               L ++      S +  + K   V   
Sbjct: 207 NMLEGDASVLFGSDKNTQKIH--------------LAKN------SLAFDLGK---VGLS 243

Query: 816 KELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSI 875
           K L           +DL  N   G +P  +T L  L SLN+S+N+  G IP   G ++  
Sbjct: 244 KNLNG---------LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293

Query: 876 EVIDFSNN 883
           +V  ++NN
Sbjct: 294 DVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (445), Expect = 8e-49
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 11/216 (5%)

Query: 555 PQLYFLNFSNS-RINGEIPN-LSKATGLRTVDLSSNNLSGTLPL-ISF--QLESIDLSNN 609
           P L FL       + G IP  ++K T L  + ++  N+SG +P  +S    L ++D S N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 610 AFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYL-RVLNLGNNNFTGNLPPS 668
           A SG++ P + + +   L  +  + N  SG IPD + +F  L   + +  N  TG +PP+
Sbjct: 136 ALSGTLPPSISS-LP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 669 LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILN 728
             +L +L  + L +N L G       +      +++  N  + D+         ++  L+
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLD 250

Query: 729 LRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPK 764
           LR+N   G  P  L  L  L  L++ +NNL G IP+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (440), Expect = 3e-48
 Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 13/231 (5%)

Query: 554 SPQLYFLNFSNSRINGEI---PNLSKATGLRTVDLSS-NNLSGTLPL-ISF--QLESIDL 606
           + ++  L+ S   +        +L+    L  + +   NNL G +P  I+   QL  + +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 607 SNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLP 666
           ++   SG+I   L       L  L+   N+ SG +P    +   L  +    N  +G +P
Sbjct: 109 THTNVSGAIPDFLSQ--IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 667 PSLGSLGSL-TLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMV 725
            S GS   L T + + +N L+G+IP + +N N L  +++  N   GD     G    +  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG-SDKNTQ 224

Query: 726 ILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
            ++L  N        ++    +L  LDL  N + G +P+ ++ L  + +++
Sbjct: 225 KIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  170 bits (434), Expect = 3e-47
 Identities = 83/362 (22%), Positives = 137/362 (37%), Gaps = 70/362 (19%)

Query: 32  CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFT--GHVLELRL-GN 88
           C   +++ALL+ KKDL +P+  L SW    D      W GV+CD  T    V  L L G 
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTD-CCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 89  PLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSG-NSFG 147
            L                                   I  SL +  +LN+L + G N+  
Sbjct: 61  NLP------------------------------KPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 148 GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLS 207
           G IP  +  + +L YL ++     G IP  L  +  L  LD   N+              
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-------------- 136

Query: 208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISS-ISVLDLSS 266
                 L G           +I+SL +L  +   G ++    P    + S   + + +S 
Sbjct: 137 ------LSG-------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 267 NQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW 326
           N+    +  +   F   NL ++DL  N  +G   V   +  + + + L+ N     +   
Sbjct: 184 NRL---TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239

Query: 327 LASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREIS 386
           +    NL  + LR+N + G++   L  L   +  L++S   L G+IP+  G L      +
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297

Query: 387 LS 388
            +
Sbjct: 298 YA 299

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (416), Expect = 6e-45
 Identities = 69/270 (25%), Positives = 118/270 (43%), Gaps = 18/270 (6%)

Query: 228 AINSLSSLRVLRLSGCQLD--HFHPPPIVNISSISVLDLSSNQFDQNSL---VLSWVFGL 282
                  +  L LSG  L   +  P  + N+  ++ L +       N+L   +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG----GINNLVGPIPPAIAKL 100

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
           + L YL +   +  G+IP  L  + +L  LD SYN  + ++P  ++S  NLV I+   N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 343 LQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDI 402
           + G+I     + S     + +S  +L G+IP +F  L NL  + LS   +  D S    +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV---L 216

Query: 403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERV 462
           F S  +   +   +    +   L  ++G  K+L+ L L +N I G +P  L  L  L  +
Sbjct: 217 FGSDKN--TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 463 VLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
            +S N L G + +    NL +      + N
Sbjct: 274 NVSFNNLCGEIPQG--GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (403), Expect = 4e-43
 Identities = 72/334 (21%), Positives = 122/334 (36%), Gaps = 68/334 (20%)

Query: 411 LESW----DMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISG--LIPSSLGGLSSLERVVL 464
           L SW    D       G L         +++L LS  ++     IPSSL  L  L  + +
Sbjct: 24  LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 465 SN-NTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFP 523
              N L G +    +A L++L    ++   ++   G   IP F                 
Sbjct: 84  GGINNLVGPIPP-AIAKLTQLHYLYITHTNVS---GA--IPDF----------------- 120

Query: 524 FWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLSKATGLRT 582
                   L  +                     L  L+FS + ++G +P ++S    L  
Sbjct: 121 --------LSQI-------------------KTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 583 VDLSSNNLSGTLPL----ISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638
           +    N +SG +P      S    S+ +S N  +G I P   N     L  ++L  N   
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDLSRNMLE 210

Query: 639 GEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNR 698
           G+    + +    + ++L  N+   +L   +G   +L  L L+ N + G +P+ L+    
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 699 LVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN 732
           L SLN+  N   G+IP   G       +    +N
Sbjct: 270 LHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (383), Expect = 2e-40
 Identities = 62/348 (17%), Positives = 120/348 (34%), Gaps = 82/348 (23%)

Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDL-GSNDFQGSIPVGLQNLTS 308
                    ++ LDLS     +   + S +  L  L +L + G N+  G IP  +  LT 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 309 LRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL 368
           L +L +++ + + +IP++L+    LV +    N+L G++   +++L  ++  +     ++
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGNRI 161

Query: 369 EGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQ 428
            G IP S+G    L                              S  ++  ++ G +   
Sbjct: 162 SGAIPDSYGSFSKL----------------------------FTSMTISRNRLTGKIPPT 193

Query: 429 IGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFD 488
             +  +L  + LS N + G      G   + +++ L+ N+L   L +  +     L   D
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLD 250

Query: 489 VSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPA 548
           +  N +    G   +P   L +L                                     
Sbjct: 251 LRNNRIY---GT--LPQG-LTQL------------------------------------- 267

Query: 549 RFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPL 596
                   L+ LN S + + GEIP             ++N      PL
Sbjct: 268 ------KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (371), Expect = 5e-39
 Identities = 61/291 (20%), Positives = 99/291 (34%), Gaps = 71/291 (24%)

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGR--IPESLSNCNRLVSLNM-DGNQFS 710
            +  N  + G L  +      +  L L   +L     IP SL+N   L  L +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
           G IP  I +                         LT L  L + + N+SGAIP  +S + 
Sbjct: 91  GPIPPAIAK-------------------------LTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 771 AMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL- 829
            +VT+D                 +      + S  +               +I  L  L 
Sbjct: 126 TLVTLD--------------FSYN------ALSGTLP-------------PSISSLPNLV 152

Query: 830 -IDLSKNNFSGEIPVEVTDLVAL-RSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE 887
            I    N  SG IP        L  S+ +S N  +G+IP +   + ++  +D S N L  
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211

Query: 888 EIPRSVSNLTFLNLLNLSYNYLSGEIP---TSTQLQSFDASCFIGNDLCGS 935
           +      +      ++L+ N L+ ++     S  L   D      N + G+
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR---NNRIYGT 259

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  116 bits (292), Expect = 2e-28
 Identities = 54/253 (21%), Positives = 90/253 (35%), Gaps = 82/253 (32%)

Query: 666 PPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMV 725
           P +L S    T       +  G + ++ +   R+ +L++ G       P           
Sbjct: 21  PTTLSSWLPTT--DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP----------- 67

Query: 726 ILNLRSNIFDGQFPTELCFLTSLQILDL-GYNNLSGAIPKCISNLSAMVTVDYPLGDTHP 784
                        P+ L  L  L  L + G NNL G IP                    P
Sbjct: 68  ------------IPSSLANLPYLNFLYIGGINNLVGPIP--------------------P 95

Query: 785 GITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVE 844
            I   +                          +L Y         + ++  N SG IP  
Sbjct: 96  AIAKLT--------------------------QLHY---------LYITHTNVSGAIPDF 120

Query: 845 VTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFL-NLLN 903
           ++ +  L +L+ SYN  SG +P SI ++ ++  I F  N++S  IP S  + + L   + 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 904 LSYNYLSGEIPTS 916
           +S N L+G+IP +
Sbjct: 181 ISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 840 EIPVEVTDLVALRS----LNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS--EEIPRSV 893
           +I  ++ +   L S     +     + G + D+      +  +D S   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 894 SNLTFLNLLNLS-YNYLSGEIPTS----TQLQSFDASCFIGNDLCGS 935
           +NL +LN L +   N L G IP +    TQL     +     ++ G+
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---HTNVSGA 116

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  237 bits (608), Expect = 7e-68
 Identities = 97/588 (16%), Positives = 181/588 (30%), Gaps = 65/588 (11%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
                 L+ S N            +  L +L+L+      +      +  +L  L L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 193 SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP 252
             L     + L G   L+HL      +       + +++  +L  L L    +     P 
Sbjct: 92  P-LIFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNL--VYLDLGSNDFQGSIPVGLQNLTSLR 310
                 + VLD  +N    + L    +  L     + L+L  ND    I  G  +    +
Sbjct: 149 GFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQ 205

Query: 311 HLDLSYNDFNSSIPNWLA--SFSNLVHISLRSNSLQGSITGFLANLSA-SIEVLDLSSQQ 367
            L+         I   L   +  +L   +      +         L   S+E ++L    
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 368 LEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS 427
                  +F     L+E+ L+   +S+                              L S
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSE------------------------------LPS 295

Query: 428 QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSF 487
            +    +L  L LS N    L   S     SL  + +  NT +  L    L NL  L   
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 488 DVSGNALT-LKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT 545
           D+S + +         +     L+ L+L                  L  LD++ + ++  
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESI 604
                ++    L  LN S+S ++            L+ ++L  N+               
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG----------N 465

Query: 605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN 664
               N+                L++L L     S      + +   +  ++L +N  T +
Sbjct: 466 IQKTNSLQTLGR----------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

Query: 665 LPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGD 712
              +L  L  +  L+L  N +S  +P  L   ++  ++N+  N     
Sbjct: 516 SIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  220 bits (562), Expect = 1e-61
 Identities = 109/665 (16%), Positives = 211/665 (31%), Gaps = 113/665 (16%)

Query: 261 VLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFN 320
             +  +   ++    L      ++   L+   N            L +L  LDL+     
Sbjct: 16  TYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 321 SSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLC 380
               +   S   L  + L +N L       L+    +++ L      +            
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQ- 128

Query: 381 NLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFL 440
                                                               K+L+SL+L
Sbjct: 129 ----------------------------------------------------KTLESLYL 136

Query: 441 SHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKL--VSFDVSGNALTLKV 498
             N IS +          L+ +   NN +  YLS+  +++L +   +S +++GN +   +
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA-GI 194

Query: 499 GPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNV--LGYLDISRSGIQDTVPARFWE-ASP 555
            P        + L+             L +  +  L          +D  PA F      
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 556 QLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLIS--FQLESIDLSNNAFS 612
            +  +N           N     +GL+ +DL++ +LS     +     L+ + LS N F 
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314

Query: 613 GSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY-LRVLNLGNNNFT--GNLPPSL 669
             +  +  +     L  L+++ N+   E+    +  L  LR L+L +++          L
Sbjct: 315 N-LCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 670 GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNL 729
            +L  L  L+L  N       E+   C +L  L++   +          +    + +LNL
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 730 RSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKC---ISNLSAMVTVDYPLGDTHPGI 786
             ++ D         L +LQ L+L  N+      +    +  L  +  +          +
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV---------L 483

Query: 787 TDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVT 846
           + C L  S +    +F+            K + +         +DLS N  +      ++
Sbjct: 484 SFCDL--SSID-QHAFTSL----------KMMNH---------VDLSHNRLTSSSIEALS 521

Query: 847 DLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY 906
            L  +  LNL+ NH S  +P  +  +     I+   N L        SN+ FL     + 
Sbjct: 522 HLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENM 576

Query: 907 NYLSG 911
             L  
Sbjct: 577 QKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (553), Expect = 2e-60
 Identities = 90/546 (16%), Positives = 160/546 (29%), Gaps = 47/546 (8%)

Query: 236 RVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSND 294
           +        L+   P  +   +S   L+ S N       + +  F  L NL +LDL    
Sbjct: 15  KTYNCENLGLNEI-PGTLP--NSTECLEFSFNVL---PTIQNTTFSRLINLTFLDLTRCQ 68

Query: 295 FQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANL 354
                    Q+   L  L L+ N         L+    L H+      +       L N 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 355 SASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESW 414
             ++E L L S  +             L+ +   +      I  +               
Sbjct: 129 K-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA----IHYLSK------------- 170

Query: 415 DMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLS 474
                +    L        +  SL L+ N I+G+ P +                L     
Sbjct: 171 -----EDMSSLQQ-----ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 475 EIHLANLSKLVSFDVSGNALT--LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVL 532
            +  + +  L                  + +    +E ++LQ  +            + L
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 533 GYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLS 591
             LD++ + +   +P+        L  L  S ++         S    L  + +  N   
Sbjct: 281 QELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 592 GTLPLISFQ----LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN 647
             L     +    L  +DLS++    S    L       LQ LNL  N       + +  
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 648 FLYLRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDG 706
              L +L+L           S   +L  L +L+L  + L     +       L  LN+ G
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 707 NQFSGDIPTWIG--EKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPK 764
           N F           +    + IL L               L  +  +DL +N L+ +  +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 765 CISNLS 770
            +S+L 
Sbjct: 519 ALSHLK 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (526), Expect = 8e-57
 Identities = 107/610 (17%), Positives = 198/610 (32%), Gaps = 89/610 (14%)

Query: 335 HISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQ 394
             +  +  L          L  S E L+ S   L      +F RL NL  + L+      
Sbjct: 16  TYNCENLGL----NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT----RC 67

Query: 395 DISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLG 454
            I  I +                    F            LD+L L+ N +  +  ++L 
Sbjct: 68  QIYWIHE------------------DTFQSQHR-------LDTLVLTANPLIFMAETALS 102

Query: 455 GLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQ 514
           G  +L+ +      +   +  I L N   L S  +  N ++    P   P  +L+ LD Q
Sbjct: 103 GPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 515 SCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNL 574
           +  +                       +     +           LN + + I G  P  
Sbjct: 162 NNAI---------------------HYLSKEDMSSL--QQATNLSLNLNGNDIAGIEPGA 198

Query: 575 SKATGLRTVDLSSNNLSGTLPLISF-----QLESIDLSNNAFSGSISPVLCNGMRGELQV 629
             +   ++++         +           L      +         V        ++ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 630 LNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRI 689
           +NL+ + F     + +  F  L+ L+L   + +  LP  L  L +L  L L  N      
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 690 PESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCF--LTS 747
             S SN   L  L++ GN    ++ T   E   ++  L+L  +  +      L    L+ 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 748 LQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIE 807
           LQ L+L YN       +       +  +D         +    L          F +   
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLD---------LAFTRL--KVKDAQSPFQNLHL 426

Query: 808 KAFLVMKG---KELEYSTILYLVAL--IDLSKNNFSGEIPVEV---TDLVALRSLNLSYN 859
              L +               L AL  ++L  N+F      +      L  L  L LS+ 
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 860 HFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS--- 916
             S     +  ++K +  +D S+N+L+     ++S+L  +  LNL+ N++S  +P+    
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545

Query: 917 -TQLQSFDAS 925
            +Q ++ +  
Sbjct: 546 LSQQRTINLR 555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (461), Expect = 3e-48
 Identities = 107/526 (20%), Positives = 191/526 (36%), Gaps = 55/526 (10%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
               L + + L  L L  N              KLK L+        +    + +L +  
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 186 --YLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
              L+L  N    ++  ++    ++ Q L+ GG          L  +++ SL +      
Sbjct: 181 NLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 244 QLDHFHPPPIVNISSISV--LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPV 301
             +   P     +  +SV  ++L  + F   ++  +     S L  LDL +      +P 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYF--FNISSNTFHCFSGLQELDLTATHLS-ELPS 295

Query: 302 GLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSIT-GFLANLSASIEV 360
           GL  L++L+ L LS N F +      ++F +L H+S++ N+ +  +  G L NL  ++  
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRE 354

Query: 361 LDLSSQQLE--GQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTG 418
           LDLS   +E           L +L+ ++LS  +     +E                    
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-------------------- 394

Query: 419 CKIFGHLTSQIGHFKSLDSLFLSHNSISGLIP-SSLGGLSSLERVVLSNNTLKGYLSEIH 477
              F            L+ L L+   +      S    L  L+ + LS++ L    SE  
Sbjct: 395 --AFKECP-------QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQL 444

Query: 478 LANLSKLVSFDVSGNALTLKVGPDWIPPFQ----LEKLDLQSCHLGPTFPFWLLSQNVLG 533
              L  L   ++ GN    K         Q    LE L L  C L         S  ++ 
Sbjct: 445 FDGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSG 592
           ++D+S + +  +           +Y LN +++ I+  +P+ L   +  RT++L  N L  
Sbjct: 504 HVDLSHNRLT-SSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

Query: 593 TLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638
           T   I F LE    +           LC      L+ + L + + S
Sbjct: 562 TCSNIYF-LEWYKENMQKLE-DTEDTLCENP-PLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  166 bits (423), Expect = 2e-43
 Identities = 78/379 (20%), Positives = 148/379 (39%), Gaps = 17/379 (4%)

Query: 124 GKINPSLLHFQHLNYLDLSGNSFGGGIPRFLG--SMGKLKYLNLSGAGFKGMIPHQLGNL 181
             I P          L+  G      I + L   ++  L          + + P     L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 182 SK--LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLR 239
            +  ++ ++L ++   +  + +     S LQ LDL   +L +       +  LS+L+ L 
Sbjct: 252 CEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPS---GLVGLSTLKKLV 307

Query: 240 LSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGS- 298
           LS  + ++       N  S++ L +  N   +  L    +  L NL  LDL  +D + S 
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTK-RLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 299 -IPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSIT-GFLANLSA 356
              + L+NL+ L+ L+LSYN+  S           L  + L    L+         NL  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH- 425

Query: 357 SIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDM 416
            ++VL+LS   L+    + F  L  L+ ++L      +   +  +   +    RLE   +
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL--GRLEILVL 483

Query: 417 TGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEI 476
           + C +           K ++ + LSHN ++     +L  L  +  + L++N +   +   
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPS 541

Query: 477 HLANLSKLVSFDVSGNALT 495
            L  LS+  + ++  N L 
Sbjct: 542 LLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  148 bits (375), Expect = 3e-37
 Identities = 60/346 (17%), Positives = 114/346 (32%), Gaps = 24/346 (6%)

Query: 581 RTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
           +T +  +  L+     +    E ++ S N      +          L  L+L        
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRCQIYWI 72

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
             D + +   L  L L  N        +L    +L  L   +  +S      L N   L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQI--LDLGYNNL 758
           SL +  N  S  I    G     + +L+ ++N        ++  L       L+L  N++
Sbjct: 133 SLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 759 SGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPR-------SFSDPIEKAFL 811
           +G I     + +   ++++  G  +  +    L  S +              D     F 
Sbjct: 192 AG-IEPGAFDSAVFQSLNF-GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 812 VMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGA 871
            +    +E          I+L K+ F             L+ L+L+  H S  +P  +  
Sbjct: 250 GLCEMSVES---------INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 872 MKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTST 917
           + +++ +  S N+       S SN   L  L++  N    E+ T  
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (334), Expect = 3e-32
 Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 8/249 (3%)

Query: 121 KFGGKINPSLLHFQHLNYLDLSGNSFGGGI-PRFLGSMGKLKYLNLSG--AGFKGMIPHQ 177
           KF      S  +F  L +L + GN+    +    L ++  L+ L+LS            Q
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRV 237
           L NLS LQ L+L  N  L +   ++      L+ LDL    L K  D      +L  L+V
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRL-KVKDAQSPFQNLHLLKV 429

Query: 238 LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQ 296
           L LS   LD         + ++  L+L  N F + ++  +     L  L  L L   D  
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 297 GSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSA 356
                   +L  + H+DLS+N   SS    L+    +  ++L SN +   +   L  LS 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILS- 547

Query: 357 SIEVLDLSS 365
               ++L  
Sbjct: 548 QQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 120 SKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLG 179
            K   +   SL     L  L LS             S+  + +++LS           L 
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 180 NLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGG 216
           +L  + YL+L  N  + +   S LP LS  + ++L  
Sbjct: 522 HLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQ 556

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  231 bits (591), Expect = 1e-63
 Identities = 102/650 (15%), Positives = 204/650 (31%), Gaps = 118/650 (18%)

Query: 139 LDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVD 198
            +   + +G      L + G++  L+L+G G KG +P  +G L++L+ L    +SE    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 199 NLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISS 258
            L     L+     +    +  +     + ++    L +  L    ++    P +  I  
Sbjct: 364 RLFGDEELTPDMSEER--KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKK 419

Query: 259 ISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYND 318
            S + L   Q    +  ++                     I   +Q LT L+ +  + + 
Sbjct: 420 DSRISLKDTQIGNLTNRIT--------------------FISKAIQRLTKLQIIYFANSP 459

Query: 319 FNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGR 378
           F            +    +        +     +NL   +  ++L +     Q+P     
Sbjct: 460 FTYDNIA-----VDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYD 513

Query: 379 LCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSL 438
           L  L+ ++++  +         D                    +  L         +   
Sbjct: 514 LPELQSLNIACNRGISAAQLKAD--------------------WTRLADDEDTGPKIQIF 553

Query: 439 FLSHNSISGLIPS-SLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLK 497
           ++ +N++     S SL  +  L  +   +N ++  L         KL    +  N +   
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LEAF--GTNVKLTDLKLDYNQIE-- 608

Query: 498 VGPDWIPPF------QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFW 551
                IP        Q+E L      L    P    +++V                    
Sbjct: 609 ----EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV-------------------- 643

Query: 552 EASPQLYFLNFSNSRINGEIPNLS------KATGLRTVDLSSNNLSGTLPLI---SFQLE 602
                +  ++FS ++I  E  N+S      K     TV LS N +      +      + 
Sbjct: 644 ---YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 603 SIDLSNNAFSGSISPVLCNGMRGE------LQVLNLENNSFSGEIPDCWMNFL-YLRVLN 655
           +I LSNN  + SI         G       L  ++L  N  +    D     L YL  ++
Sbjct: 701 TIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 656 LGNNNFTGNLPPSLGSLGSLTLLHLQK------NSLSGRIPESLSNCNRLVSLNMDGNQF 709
           +  N F+   P    +   L    ++       N +  + P  ++ C  L+ L +  N  
Sbjct: 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 710 SGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
              +   +      + IL++  N       T +C      +  L Y+   
Sbjct: 819 RK-VDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  218 bits (558), Expect = 2e-59
 Identities = 71/648 (10%), Positives = 167/648 (25%), Gaps = 124/648 (19%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
              +  L L     +G +P  +  LT L+ L    +    S   +            R +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQ---IPRSFGRLCNLREISLSDVKMSQDISE 398
            ++        +    + + DL    +       P       +L++  + +  ++  I+ 
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN--LTNRITF 439

Query: 399 ILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSS 458
           I           L+              +        +     +         S   L  
Sbjct: 440 ISKAIQRLTK--LQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 459 LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHL 518
           L  V L N      L +  L +L +L S +++ N              + +   L     
Sbjct: 493 LTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGIS------AAQLKADWTRL----- 540

Query: 519 GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKAT 578
                    +   +    +  + +++   +   +   +L  L+  ++++   +       
Sbjct: 541 ----ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNV 595

Query: 579 GLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLEN 634
            L  + L  N +   +P        Q+E +  S+N      +      +   +  ++   
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY-VMGSVDFSY 653

Query: 635 NSFSGEIPDC-----WMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS--- 686
           N    E  +          +    + L  N           +   ++ + L  N ++   
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 687 ----GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTEL 742
                    +  N   L ++++  N+ +  +                             
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFR-----------------------A 749

Query: 743 CFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSF 802
             L  L  +D+ YN  S   P    N S +                              
Sbjct: 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQL------------------------------ 778

Query: 803 SDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFS 862
                                  +    D   N    + P  +T   +L  L +  N   
Sbjct: 779 -------------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 863 GRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
             + + +     + ++D ++N        SV       +  L Y+   
Sbjct: 820 K-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  197 bits (503), Expect = 2e-52
 Identities = 84/540 (15%), Positives = 167/540 (30%), Gaps = 72/540 (13%)

Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
            +   + +     V L N   +  L L+       +P+ +   + L  +S  ++S   S 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 348 TGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCI 407
             F           +   +               L    L        I+   ++     
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA----INRNPEMKPIKK 419

Query: 408 SDRLESWDMTGCKIFGHLTS---QIGHFKSLDSLFLSHNSISGL---------------- 448
             R+   D     +   +T     I     L  ++ +++  +                  
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 449 ---IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT----LKVGPD 501
                 S   L  L  V L N      L +  L +L +L S +++ N       LK    
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 502 WIPPF-----QLEKLDLQSCHL---GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEA 553
            +        +++   +   +L     +     + +  LG LD   + ++  + A  +  
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK--LGLLDCVHNKVR-HLEA--FGT 593

Query: 554 SPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISF----QLESIDLS 607
           + +L  L    ++I  EIP    +    +  +  S N L     + +      + S+D S
Sbjct: 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 608 NNAFSG---SISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT-- 662
            N       +IS  + +        + L  N       + +     +  + L NN  T  
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 663 -----GNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCN--RLVSLNMDGNQFSGDIPT 715
                     +  +   LT + L+ N L+  + +         L ++++  N FS   PT
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPT 770

Query: 716 WIGEKFSSMVILNLR------SNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNL 769
                 S +    +R       N    Q+PT +    SL  L +G N++     K    L
Sbjct: 771 QPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (492), Expect = 4e-51
 Identities = 88/672 (13%), Positives = 192/672 (28%), Gaps = 134/672 (19%)

Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSS 365
                 LD     + S   N      N      +   + G   G   + +  +  L L+ 
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWN--FNKELDMWGDQPGVDLDNNGRVTGLSLAG 332

Query: 366 QQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHL 425
              +G++P + G+L  L+ +S      +                  +  +    +I  H 
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF-----GDEELTPDMSEERKHRIRMHY 387

Query: 426 TS-QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH-----LA 479
               + + + L+   L  ++I+      +  +    R+ L +  +    + I      + 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 480 NLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISR 539
            L+KL     + +  T             E  +                      L    
Sbjct: 446 RLTKLQIIYFANSPFT-----YDNIAVDWEDANSDYAKQYENEE------LSWSNL---- 490

Query: 540 SGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLIS 598
                            L  +   N     ++P+ L     L++++++ N       L +
Sbjct: 491 ---------------KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 599 F------------QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWM 646
                        +++   +  N      +      M  +L +L+  +N     +   + 
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV-KLGLLDCVHNKVR-HLEA-FG 592

Query: 647 NFLYLRVLNLGNNNFTGNLPPSLGS-LGSLTLLHLQKNSLSGRIPE--SLSNCNRLVSLN 703
             + L  L L  N     +P    +    +  L    N L   IP   +  +   + S++
Sbjct: 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVD 650

Query: 704 MDGNQFSGDIPTWIGE----KFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
              N+   +           K  +   + L  N             + +  + L  N ++
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 760 GAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELE 819
            +IP+                             S  P+  ++ +               
Sbjct: 711 -SIPE----------------------------NSLKPKDGNYKN--------------- 726

Query: 820 YSTILYLVALIDLSKNNFSGEIPVE--VTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEV 877
                YL+  IDL  N  +  +  +   T L  L ++++SYN FS   P        ++ 
Sbjct: 727 ----TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780

Query: 878 I------DFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS--TQLQSFDASCFIG 929
                  D   N++  + P  ++    L  L +  N +  ++      QL   D +    
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIA---D 836

Query: 930 NDLCGSPLSRNC 941
           N      ++  C
Sbjct: 837 NPNISIDVTSVC 848

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (444), Expect = 4e-45
 Identities = 70/435 (16%), Positives = 138/435 (31%), Gaps = 63/435 (14%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGG-------------------GIPRFLGSMGKLKYLNLS 166
           I+ ++     L  +  + + F                            ++  L  + L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 167 GAGFKGMIPHQLGNLSKLQYLDLVENS----ELYVDNLSWLP----GLSLLQHLDLGGVN 218
                  +P  L +L +LQ L++  N          + + L         +Q   +G  N
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 219 LGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSW 278
           L + F  S ++  +  L +L     ++   H         ++ L L  NQ     +   +
Sbjct: 560 L-EEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQI--EEIPEDF 614

Query: 279 VFGLSNLVYLDLGSNDFQGSIP--VGLQNLTSLRHLDLSYNDFNSSIPNWLASFS----- 331
                 +  L    N  +  IP     +++  +  +D SYN   S   N   S       
Sbjct: 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 332 NLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE-------GQIPRSFGRLCNLRE 384
           N   ++L  N +Q   T   A  S  I  + LS+  +             ++     L  
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 385 ISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH-- 442
           I L   K    ++ + D F +     L + D++    F    +Q  +   L +  + H  
Sbjct: 733 IDLRFNK----LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQR 787

Query: 443 ----NSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKV 498
               N I    P+ +    SL ++ + +N     + ++      +L   D++ N      
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSN----DIRKVDEKLTPQLYILDIADNPNISID 843

Query: 499 GPDWIPPFQLEKLDL 513
                P  +     L
Sbjct: 844 VTSVCPYIEAGMYVL 858

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  225 bits (576), Expect = 2e-63
 Identities = 115/662 (17%), Positives = 206/662 (31%), Gaps = 106/662 (16%)

Query: 124 GKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK 183
           G +NP +    ++             +P  + S    K ++LS    K +  +   N S+
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLSK-VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 184 LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           LQ+LDL          +  +                        A + L  L  L L+G 
Sbjct: 58  LQWLDLSRC------EIETIE---------------------DKAWHGLHHLSNLILTGN 90

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG-SIPVG 302
            +  F P     ++S+  L     +    SL    +  L  L  L++  N      +P  
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKL--ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNL----VHISLRSNSLQGSITGFLANLSASI 358
             NLT+L H+DLSYN   +   N L          + + +  N +          +   +
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK--L 206

Query: 359 EVLDLSSQQLEGQIPR-SFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
             L L        I +     L  L    L   +   + +  L+IF   I + L      
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN--LEIFEPSIMEGLCD---- 260

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
                           ++D   L++ +           L+++  + L+  ++K       
Sbjct: 261 ---------------VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--- 302

Query: 478 LANLSKLVSFDVSGNALTLKVGPDWIPPFQ---LEKLDLQSCHLGPTFPFWLLSQNVLGY 534
           +    K  S  +    L         P      L+ L L       +F    L    L Y
Sbjct: 303 VPKHFKWQSLSIIRCQLKQ------FPTLDLPFLKSLTLTMNKGSISFKKVALPS--LSY 354

Query: 535 LDISRSGIQDTVPARFWE-ASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT 593
           LD+SR+ +  +    + +  +  L  L+ S +       N      L+ +D   + L   
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414

Query: 594 LPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV 653
               +F      L                    L  L++   +   +    ++    L  
Sbjct: 415 TEFSAFL----SLEK------------------LLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 654 LNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGD 712
           L +  N+F  N   +   +  +LT L L K  L           +RL  LNM  N     
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 713 IPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAM 772
             +    +  S+  L+   N  +        F  SL   +L  N+++     CI      
Sbjct: 513 DSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-----CICEHQKF 566

Query: 773 VT 774
           + 
Sbjct: 567 LQ 568

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  212 bits (543), Expect = 5e-59
 Identities = 97/527 (18%), Positives = 178/527 (33%), Gaps = 38/527 (7%)

Query: 257 SSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS 315
           SS   +DLS N       + S+ F   S L +LDL   + +         L  L +L L+
Sbjct: 32  SSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 316 YNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEG-QIPR 374
            N   S  P   +  ++L ++      L    +  +  L  +++ L+++   +   ++P 
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPA 147

Query: 375 SFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKS 434
            F  L NL  + LS   +       L            S DM+   I   +  Q      
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLREN-PQVNLSLDMSLNPI-DFIQDQAFQGIK 205

Query: 435 LDSLFLSHNSISGLIPS-SLGGLSSLERVVLSNNTLKGY--LSEIHLANLSKLVSFDVSG 491
           L  L L  N  S  I    L  L+ L    L     K    L     + +  L       
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV---- 261

Query: 492 NALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFW 551
                           +++  L   +              +  + ++   I+        
Sbjct: 262 ---------------TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK- 305

Query: 552 EASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNA 610
               +   L+    ++  + P L     L+++ L+ N  S +   ++   L  +DLS NA
Sbjct: 306 --HFKWQSLSIIRCQLK-QFPTLD-LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA 361

Query: 611 FSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPS-L 669
            S S      +     L+ L+L  N     +   +M    L+ L+  ++        S  
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 670 GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNL 729
            SL  L  L +   +              L +L M GN F  +  + +    +++  L+L
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 730 RSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
                +         L  LQ+L++ +NNL        + L ++ T+D
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  195 bits (498), Expect = 4e-53
 Identities = 96/643 (14%), Positives = 197/643 (30%), Gaps = 105/643 (16%)

Query: 297 GSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSA 356
           GS+   ++ + ++           S +P+ +   S+  +I L  N L+   +   +N S 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKL-SKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFS- 56

Query: 357 SIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDM 416
            ++ LDLS  ++E    +++  L +L  + L+                            
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILT---------------------------- 88

Query: 417 TGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEI 476
            G  I            SL++L      ++ L    +G L +L+++ +++N +       
Sbjct: 89  -GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 477 HLANLSKLVSFDVSGNALTLKVGPDWIPPFQ-----LEKLDLQSCHLGPTFPFWLLSQNV 531
           + +NL+ LV  D+S N +   +  + +   +        LD+    +             
Sbjct: 148 YFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205

Query: 532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLS 591
           L  L +  +     +     +    L+           E              L     S
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN------------LEIFEPS 253

Query: 592 GTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYL 651
               L    ++   L+      S   V  + +   +  ++L   S      +        
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDF-SDDIVKFHCLA-NVSAMSLAGVSIKY--LEDVPKHFKW 309

Query: 652 RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711
           + L++               L  L  L L  N  S  I         L  L++  N  S 
Sbjct: 310 QSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF 364

Query: 712 DIP-TWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIP-KCISNL 769
               ++     +S+  L+L  N            L  LQ LD  ++ L          +L
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 770 SAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829
             ++ +D         I+  +                         K       L L +L
Sbjct: 424 EKLLYLD---------ISYTNT------------------------KIDFDGIFLGLTSL 450

Query: 830 --IDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS 886
             + ++ N+F       V  +   L  L+LS              +  +++++ S+N L 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 887 EEIPRSVSNLTFLNLLNLSYNYLSGEIPTS----TQLQSFDAS 925
                  + L  L+ L+ S+N +             L  F+ +
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (280), Expect = 2e-25
 Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 7/212 (3%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQ-LGNLSKLQYL 187
           S L    L +LDLS N     +      + +L++L+   +  K +       +L KL YL
Sbjct: 371 SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
           D+   +   +D      GL+ L  L + G N  K    S    + ++L  L LS CQL+ 
Sbjct: 430 DISYTN-TKIDFDGIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
                   +  + +L++S N      L  S    L +L  LD   N  + S  +      
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNL--LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 308 SLRHLDLSYNDFNSSIPN-WLASFSNLVHISL 338
           SL   +L+ N       +     +       L
Sbjct: 546 SLAFFNLTNNSVACICEHQKFLQWVKEQKQFL 577

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  194 bits (496), Expect = 4e-53
 Identities = 104/523 (19%), Positives = 190/523 (36%), Gaps = 34/523 (6%)

Query: 209 LQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ 268
            ++LDL    L     +S    S   L+VL LS C++         ++S +S L L+ N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 269 FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS-SIPNWL 327
               SL L    GLS+L  L     +        + +L +L+ L++++N   S  +P + 
Sbjct: 88  I--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 328 ASFSNLVHISLRSNSLQG---SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLRE 384
           ++ +NL H+ L SN +Q    +    L  +      LDLS   +   I     +   L +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHK 204

Query: 385 ISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS-QIGHFKSLDSLFLSHN 443
           ++L +   S ++ +            +    +   +  G+L        + L +L +   
Sbjct: 205 LTLRNNFDSLNVMK--TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 444 SISGL------IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLK 497
            ++ L      I      L+++    L + T++      +      L   +         
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-- 320

Query: 498 VGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQD-TVPARFWEASPQ 556
                +    L++L   S   G  F    L    L +LD+SR+G+      ++    +  
Sbjct: 321 ----TLKLKSLKRLTFTSNKGGNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 557 LYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQ----LESIDLSNNAFS 612
           L +L+ S + +     N      L  +D   +NL        F     L  +D+S+    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 613 GSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY-LRVLNLGNNNFTGNLPPSLGS 671
                 + NG+   L+VL +  NSF           L  L  L+L         P +  S
Sbjct: 435 -VAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 672 LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIP 714
           L SL +L++  N L             L  + +  N +    P
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (450), Expect = 4e-47
 Identities = 99/527 (18%), Positives = 177/527 (33%), Gaps = 37/527 (7%)

Query: 257 SSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS 315
            S   LDLS N       + S+ F     L  LDL   + Q       Q+L+ L  L L+
Sbjct: 28  FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 316 YNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL-EGQIPR 374
            N   S      +  S+L  +     +L       + +L  +++ L+++   +   ++P 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPE 143

Query: 375 SFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKS 434
            F  L NL  + LS  K+       L +    +     S D++   +   +         
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPM-NFIQPGAFKEIR 201

Query: 435 LDSLFLSHNSISGLIPS-SLGGLSSLERVVLSNNTLKGY--LSEIHLANLSKLVSFDVSG 491
           L  L L +N  S  +    + GL+ LE   L     +    L +   + L  L +  +  
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 492 NALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFW 551
                          +L  LD     +   F         +    +    I+      + 
Sbjct: 262 F--------------RLAYLDYYLDDIIDLFN----CLTNVSSFSLVSVTIERVKDFSYN 303

Query: 552 EASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNA 610
                L  +N    +     P L     L+ +  +SN        +    LE +DLS N 
Sbjct: 304 FGWQHLELVNCKFGQ----FPTLK-LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 611 FSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPS-L 669
            S        +     L+ L+L  N     +   ++    L  L+  ++N       S  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 670 GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNL 729
            SL +L  L +             +  + L  L M GN F  +    I  +  ++  L+L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 730 RSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
                +   PT    L+SLQ+L++  N L          L+++  + 
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (405), Expect = 2e-41
 Identities = 108/554 (19%), Positives = 183/554 (33%), Gaps = 77/554 (13%)

Query: 127 NPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQY 186
           + S   F  L  LDLS             S+  L  L L+G   + +       LS LQ 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 187 LDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLD 246
           L  VE +   ++N   +  L  L+ L++    + ++F      ++L++L  L LS  ++ 
Sbjct: 105 LVAVETNLASLEN-FPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 247 HFHPPPIVNISSISV----LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG 302
             +   +  +  + +    LDLS N  +    +    F    L  L L +N    ++   
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 303 -LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL 361
            +Q L  L    L   +F +     L  F       L + ++               E  
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNE--GNLEKFDKSALEGLCNLTI---------------EEF 262

Query: 362 DLSSQQLEG-QIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCK 420
            L+        I   F  L N+   SL  V     I  + D                   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT----IERVKDFS----------------- 301

Query: 421 IFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLAN 480
                     +      L L +          L  L  L     ++N      SE+ L +
Sbjct: 302 ----------YNFGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEVDLPS 348

Query: 481 LSKLVSFDVSGNALTLKVGPD--WIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDIS 538
           L  L   D+S N L+ K            L+ LDL    +  T     L    L +LD  
Sbjct: 349 LEFL---DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 539 RSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPL 596
            S ++       + +   L +L+ S++       N   +  + L  + ++ N+       
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 597 ISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLR 652
             F     L  +DLS       +SP   N +   LQVLN+ +N         +     L+
Sbjct: 464 DIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQ 521

Query: 653 VLNLGNNNFTGNLP 666
            + L  N +  + P
Sbjct: 522 KIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (375), Expect = 2e-37
 Identities = 111/640 (17%), Positives = 208/640 (32%), Gaps = 132/640 (20%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           + N+ Y      +F   IP  L    S ++LDLS+N           SF  L  + L   
Sbjct: 7   VPNITY-QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
            +Q    G   +LS  +  L L+   ++     +F  L +L+++   +  ++   +    
Sbjct: 63  EIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-- 119

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL-IPSSLGGLSSLE 460
                                GHL +       L  L ++HN I    +P     L++LE
Sbjct: 120 --------------------IGHLKT-------LKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 461 RVVLSNNTLKGYLSEIHLANLSKL----VSFDVSGNALTLKVGPDWIPPFQLEKLDLQSC 516
            + LS+N ++  +    L  L ++    +S D+S N +   + P      +L KL L++ 
Sbjct: 153 HLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN 210

Query: 517 HLGPTFP---FWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN 573
                        L+   +  L +     +  +      A   L  L     R+      
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY---- 266

Query: 574 LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
                    +D   +++      +   + S  L +      +     N     L+++N +
Sbjct: 267 ---------LDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCK 315

Query: 634 NNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS--GRIPE 691
              F        +    L+ L   +N        S   L SL  L L +N LS  G   +
Sbjct: 316 FGQFPT------LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 692 SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQIL 751
           S      L  L++  N                                +    L  L+ L
Sbjct: 368 SDFGTTSLKYLDLSFNGVI--------------------------TMSSNFLGLEQLEHL 401

Query: 752 DLGYNNLSGAIPKCI-SNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAF 810
           D  ++NL       +  +L  ++ +D         I+                       
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLD---------ISHTHT------------------- 433

Query: 811 LVMKGKELEYSTILYLVAL--IDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPD 867
                +         L +L  + ++ N+F      ++ T+L  L  L+LS        P 
Sbjct: 434 -----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 868 SIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYN 907
           +  ++ S++V++ ++NQL          LT L  + L  N
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  132 bits (333), Expect = 4e-32
 Identities = 99/503 (19%), Positives = 176/503 (34%), Gaps = 70/503 (13%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
             S  +L LS N +  L   S      L+ + LS   ++  + +    +LS L +  ++G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 492 NALTLKVGPDWI-PPFQLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDTVPA 548
           N +   +          L+KL     +L     FP   L    L  L+++ + IQ     
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--LKELNVAHNLIQSFKLP 142

Query: 549 RFWEASPQLYFLNFSNSRI----NGEIPNLSKATGLR-TVDLSSNNLSGTLPLISFQ--- 600
            ++     L  L+ S+++I      ++  L +   L  ++DLS N ++  +   +F+   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201

Query: 601 LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG-----EIPDCWMN---FLYLR 652
           L  + L NN  S ++      G+ G L+V  L    F       +     +     L + 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAG-LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 653 VLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711
              L   ++  +    L   L +++   L   ++     +  S       L +   +F  
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFG- 317

Query: 712 DIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS--GAIPKCISNL 769
             PT    K  S+  L   SN     F      L SL+ LDL  N LS  G   +     
Sbjct: 318 QFPTL---KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 770 SAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829
           +++  +D  L      +   S     L +                   LE+         
Sbjct: 373 TSLKYLD--LSFNG--VITMSSNFLGLEQ-------------------LEH--------- 400

Query: 830 IDLSKNNFSGEIPVEVTD-LVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEE 888
           +D   +N        V   L  L  L++S+ H           + S+EV+  + N   E 
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 889 IPRSV-SNLTFLNLLNLSYNYLS 910
               + + L  L  L+LS   L 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (288), Expect = 1e-26
 Identities = 78/407 (19%), Positives = 135/407 (33%), Gaps = 57/407 (14%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGG---------------------------GIPRFLGSM 157
           K+     +  +L +LDLS N                                I       
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 158 GKLKYLNLSGAGFKG-MIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSL-------L 209
            +L  L L        ++   +  L+ L+   LV        NL      +L       +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 210 QHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQF 269
           +   L  ++     D     N L+++    L    ++               L+L + +F
Sbjct: 260 EEFRLAYLDY-YLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKF 316

Query: 270 DQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFN--SSIPNWL 327
            Q   +      L +L  L   SN    +      +L SL  LDLS N  +         
Sbjct: 317 GQFPTL-----KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 328 ASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRS-FGRLCNLREIS 386
              ++L ++ L  N +  +++     L   +E LD     L+     S F  L NL  + 
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 387 LSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQI-GHFKSLDSLFLSHNSI 445
           +S        + I +  SS     LE   M G     +    I    ++L  L LS   +
Sbjct: 428 ISHTHTRVAFNGIFNGLSS-----LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 446 SGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
             L P++   LSSL+ + +++N LK  + +     L+ L    +  N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.2 bits (245), Expect = 3e-21
 Identities = 53/343 (15%), Positives = 97/343 (28%), Gaps = 31/343 (9%)

Query: 582 TVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEI 641
           T      N       + F  +++DLS N      S    +    ELQVL+L         
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIE 68

Query: 642 PDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVS 701
              + +  +L  L L  N        +   L SL  L   + +L+      + +   L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQI----LDLGYNN 757
           LN+  N              +++  L+L SN     + T+L  L  + +    LDL  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 758 LSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE 817
           ++   P     +                     L         +      +    ++   
Sbjct: 189 MNFIQPGAFKEIRLH-----------------KLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 818 LEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR-IPDSIGAMKSIE 876
           L          L    K+   G   +       +    L+Y  +    I D    + ++ 
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLT------IEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 877 VIDFSNNQLSEEIPRS-VSNLTFLNLLNLSYNYLSGEIPTSTQ 918
                +  +      S       L L+N  +         S +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  198 bits (505), Expect = 9e-53
 Identities = 117/593 (19%), Positives = 216/593 (36%), Gaps = 50/593 (8%)

Query: 137 NYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELY 196
                   +    +P+ L +    + L LS    + +       L +LQ L+L       
Sbjct: 7   RIAFYRFCNLTQ-VPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 197 VDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP--IV 254
             +      L  L+ LDLG  +         A   L  L  LRL  C L           
Sbjct: 63  TIDKEAFRNLPNLRILDLGS-SKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 255 NISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLT--SLRH 311
           N+ +++ LDLS NQ    SL L   F  L++L  +D  SN         L+ L   +L  
Sbjct: 121 NLKALTRLDLSKNQIR--SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 312 LDLSYNDFNSSIP-NWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEG 370
             L+ N   S +  +W    +   ++ L    + G+          ++++    S  +  
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW--------TVDITGNFSNAISK 230

Query: 371 QIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIG 430
               S     ++         +  D  +  + F+      +   D++   +F   +    
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIK-DPDQ--NTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 431 HFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS 490
             K L  L L++N I+ +   +  GL +L+ + LS N L   L   +   L K+   D+ 
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQ 346

Query: 491 GNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
            N + +     +    +L+ LDL+   L  T  F       +  + +S + +        
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFI----PSIPDIFLSGNKL-----VTL 396

Query: 551 WEASPQLYFLNFSNSRING--EIPNLSKATGLRTVDLSSNNLSGTLPLISFQ----LESI 604
            + +     ++ S +R+     +  L +   L+ + L+ N  S      +      LE +
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 605 DLSNNAFSGSISPVLCNGMRGE---LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNF 661
            L  N    +    LC  +      LQVL L +N  +   P  + +   LR L+L +N  
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 662 TGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIP 714
           T  L  +     +L +L + +N L    P+   +   L  L++  N+F  +  
Sbjct: 517 T-VLSHND-LPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  163 bits (414), Expect = 2e-41
 Identities = 90/507 (17%), Positives = 177/507 (34%), Gaps = 44/507 (8%)

Query: 125 KINPSLLHF-QHLNYLDLSGNSFGGGI--PRFLGSMGKLKYLNLSGAGFKGMIPHQ-LGN 180
            ++P       HL  L L        +    +  ++  L  L+LS    + +  H   G 
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146

Query: 181 LSKLQYLDLVEN--SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVL 238
           L+ L+ +D   N    +    L  L G + L    L   +L  +         ++  R +
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSL-YSRVSVDWGKCMNPFRNM 204

Query: 239 RLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGS 298
            L    +         N  ++ +    SN    +      +    +++    G ++ +  
Sbjct: 205 VLEILDVSG-------NGWTVDITGNFSNAI--SKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 299 IPVGLQNL--TSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSA 356
                  L  +S+RHLDLS+    S       +  +L  ++L  N +          L  
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD- 314

Query: 357 SIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDM 416
           +++VL+LS   L      +F  L  +  I L    ++    +            L++ D+
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-----LQTLDL 369

Query: 417 TGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEI 476
               +     + I    S+  +FLS N +  L   +L    +   + LS N L+      
Sbjct: 370 RDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILY 420

Query: 477 HLANLSKLVSFDVSGNALTLKVGPDWIP--PFQLEKLDLQSCHLGPTFPFWLLSQNV--- 531
            L  +  L    ++ N  +     D  P     LE+L L    L   +   L        
Sbjct: 421 FLLRVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 532 --LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNN 589
             L  L ++ + +  ++P   +     L  L+ +++R+   + +      L  +D+S N 
Sbjct: 480 SHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQ 537

Query: 590 LSGTLPLISFQLESIDLSNNAFSGSIS 616
           L    P +   L  +D+++N F     
Sbjct: 538 LLAPNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  161 bits (410), Expect = 7e-41
 Identities = 114/623 (18%), Positives = 204/623 (32%), Gaps = 133/623 (21%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI-TGFLANLSA 356
            +P   Q L +   L LS+N   +   +       L  + L S     +I      NL  
Sbjct: 18  QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP- 73

Query: 357 SIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDM 416
           ++ +LDL S ++    P +F  L +L E+ L    +S  + +                  
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK------------------ 115

Query: 417 TGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL-IPSSLGGLSSLERVVLSNNTLKGYLSE 475
                F +L +       L  L LS N I  L +  S G L+SL+ +  S+N +   + E
Sbjct: 116 --DGYFRNLKA-------LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCE 165

Query: 476 IHLANLS--KLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLG 533
             L  L    L  F ++ N+L  +V  DW                            VL 
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP------------------FRNMVLE 207

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT 593
            LD+S +G    +   F  A  +    +   +              +       +N+   
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH------------IMGAGFGFHNIK-- 253

Query: 594 LPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV 653
                      D   N F+G             ++ L+L +          +     L+V
Sbjct: 254 -----------DPDQNTFAGLARS--------SVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI 713
           LNL  N        +   L +L +L+L  N L      +     ++  +++  N  +  I
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-II 353

Query: 714 PTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMV 773
                +    +  L+LR N       T + F+ S+  + L  N L       +  +    
Sbjct: 354 QDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-----TLPKI---- 399

Query: 774 TVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLS 833
                         + +     L   R  +  I    L +    L+          + L+
Sbjct: 400 --------------NLTANLIHLSENRLENLDILYFLLRVP--HLQI---------LILN 434

Query: 834 KNNFSG-EIPVEVTDLVALRSLNLSYNHFSGRIPDSIGA-----MKSIEVIDFSNNQLSE 887
           +N FS        ++  +L  L L  N         +       +  ++V+  ++N L+ 
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 888 EIPRSVSNLTFLNLLNLSYNYLS 910
             P   S+LT L  L+L+ N L+
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (404), Expect = 3e-40
 Identities = 141/781 (18%), Positives = 261/781 (33%), Gaps = 153/781 (19%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
              R+     C L     P    +++   L LS N       V +  F  L  L  L+LG
Sbjct: 4   FDGRIAFYRFCNLTQV--PQ--VLNTTERLLLSFNYIRT---VTASSFPFLEQLQLLELG 56

Query: 292 SNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI--T 348
           S     +I     +NL +LR LDL  +      P+      +L  + L    L  ++   
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 349 GFLANLSASIEVLDLSSQQLEG-QIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCI 407
           G+  NL  ++  LDLS  Q+    +  SFG+L +L+ I  S  +    I  + +      
Sbjct: 117 GYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ----IFLVCE------ 165

Query: 408 SDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
                            L       K+L    L+ NS+   +    G   +  R +    
Sbjct: 166 ------------HELEPL-----QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM---- 204

Query: 468 TLKGYLSEIHLA-NLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG--PTFPF 524
                L  + ++ N   +       NA++       I    +        ++       F
Sbjct: 205 ----VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 525 WLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRT 582
             L+++ + +LD+S   +  ++ +R +E    L  LN + ++IN +I +        L+ 
Sbjct: 261 AGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQV 318

Query: 583 VDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIP 642
           ++LS N L              +L ++ F G             +  ++L+ N  +    
Sbjct: 319 LNLSYNLLG-------------ELYSSNFYGLPK----------VAYIDLQKNHIAIIQD 355

Query: 643 DCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSL 702
             +     L+ L+L +N  T     ++  + S+  + L  N L      +L+       +
Sbjct: 356 QTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLI 406

Query: 703 NMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCF-LTSLQILDLGYNNLSGA 761
           ++  N+       +   +   + IL L  N F      +      SL+ L LG N L  A
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 762 IPKCI-----SNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK 816
               +       LS +  +          +    L                         
Sbjct: 467 WETELCWDVFEGLSHLQVLY---------LNHNYL------------------------N 493

Query: 817 ELEYSTILYLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKS 874
            L      +L AL  + L+ N  +  +         L  L++S N      PD      S
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLLAPNPDV---FVS 548

Query: 875 IEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCG 934
           + V+D ++N+   E        TF+N LN +   ++G           D  C   +   G
Sbjct: 549 LSVLDITHNKFICEC----ELSTFINWLNHTNVTIAGP--------PADIYCVYPDSFSG 596

Query: 935 SPLSRNCTETVPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMYSV 994
             L    TE          +++E      +    +  V    F++  L V +   + +  
Sbjct: 597 VSLFSLSTEGC--------DEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFIC 648

Query: 995 F 995
           +
Sbjct: 649 Y 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (313), Expect = 4e-29
 Identities = 84/416 (20%), Positives = 147/416 (35%), Gaps = 48/416 (11%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
            +      L  LD+SGN +             +                 L     +   
Sbjct: 198 MNPFRNMVLEILDVSGNGW------------TVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 188 DLVEN--SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQL 245
               +   +   +  + L   S ++HLDL    +      S    +L  L+VL L+  ++
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSS-VRHLDLSHGFV--FSLNSRVFETLKDLKVLNLAYNKI 302

Query: 246 DHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQN 305
           +         + ++ VL+LS N      L  S  +GL  + Y+DL  N          + 
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLG--ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSS 365
           L  L+ LDL  N   +     +    ++  I L  N L       L  ++ +  ++ LS 
Sbjct: 361 LEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVT-----LPKINLTANLIHLSE 410

Query: 366 QQLEG-QIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGH 424
            +LE   I     R+ +L+ + L+  +     S      +   +  LE   +    +   
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNR----FSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 425 LTSQI-----GHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLA 479
             +++          L  L+L+HN ++ L P     L++L  + L++N L         A
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526

Query: 480 NLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLD----LQSCHLGPTFPFWLLSQNV 531
           NL  L   D+S N L     PD      +  +     +  C L  TF  WL   NV
Sbjct: 527 NLEIL---DISRNQLL-APNPDVFVSLSVLDITHNKFICECELS-TFINWLNHTNV 577

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 3e-09
 Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 20/223 (8%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPR-FLGSMGKLKYLNLSGAGFKGMIPHQL----- 178
            I   LL   HL  L L+ N F              L+ L L     +     +L     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 179 GNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVL 238
             LS LQ L L  N    +        L+ L+ L L    L       L     ++L +L
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGV-FSHLTALRGLSLNSNRLTVLSHNDL----PANLEIL 531

Query: 239 RLSGCQLDHFHPPPIVNISSISVLDLSSNQFD---QNSLVLSWVFGLSNLVYLDLGSNDF 295
            +S  QL   +P   V++S +   D++ N+F    + S  ++W+   +  +       D 
Sbjct: 532 DISRNQLLAPNPDVFVSLSVL---DITHNKFICECELSTFINWLNHTNVTIAGP--PADI 586

Query: 296 QGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL 338
               P       SL  L     D    + +   S   +  ++L
Sbjct: 587 YCVYPDSFSG-VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTL 628

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (412), Expect = 2e-42
 Identities = 104/553 (18%), Positives = 193/553 (34%), Gaps = 68/553 (12%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
              +  LDLS N         L +   L+ L L  +    +      +L  L++LDL +N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 193 SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP 252
             L   + SW   LS L++L+L G N  +    +    +L++L+ LR+   +        
Sbjct: 85  H-LSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGNVET------- 135

Query: 253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHL 312
               S I  +D +               GL++L  L++ +   +      L+++  + HL
Sbjct: 136 ---FSEIRRIDFA---------------GLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 313 DLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQI 372
            L  ++    +  +    S++ ++ LR  +L       L     S  +  L+ +      
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT- 236

Query: 373 PRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHF 432
             SF  L  L    L   ++          F  C  + L  ++ +   +   L       
Sbjct: 237 DESFNELLKLLRYILELSEVE---------FDDCTLNGLGDFNPSESDVVSELGKV--ET 285

Query: 433 KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
            ++  L +    +   + +    L  ++R+ + N+ +   +      +L  L   D+S N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344

Query: 493 ALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE 552
            +  +   +         L      L       +LSQN L  +  +   +          
Sbjct: 345 LMVEEYLKNSACKGAWPSLQ----TL-------VLSQNHLRSMQKTGEILLT-------- 385

Query: 553 ASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFS 612
               L  L+ S +  +    +      +R ++LSS  +      I   LE +D+SNN   
Sbjct: 386 -LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD 444

Query: 613 GSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSL 672
            S S  L       LQ L +  N     +PD    F  L V+ +  N            L
Sbjct: 445 -SFSLFLPR-----LQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRL 496

Query: 673 GSLTLLHLQKNSL 685
            SL  + L  N  
Sbjct: 497 TSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (408), Expect = 7e-42
 Identities = 97/591 (16%), Positives = 186/591 (31%), Gaps = 105/591 (17%)

Query: 139 LDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVD 198
            D    SF   IP  L +   +K L+LS      +    L   + LQ L L  +      
Sbjct: 10  CDGRSRSFTS-IPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----- 61

Query: 199 NLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISS 258
                     +  ++              A  SL SL  L LS   L          +SS
Sbjct: 62  ----------INTIEGD------------AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 259 ISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSY 316
           +  L+L  N +   +L ++ +F  L+NL  L +G+ +    I       LTSL  L++  
Sbjct: 100 LKYLNLMGNPYQ--TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF 376
               +     L S  ++ H++L  +     +  F   LS S+  L+L    L        
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS-SVRYLELRDTNLARFQFSPL 216

Query: 377 GRLCNLREISL-----------SDVKMSQDISEILDIFSSCISD----RLESWDMTGCKI 421
                   +             S  ++ + +  IL++      D     L  ++ +   +
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 422 FGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANL 481
              L        ++  L +    +   + +    L  ++R+ + N+ +   +      +L
Sbjct: 277 VSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL 333

Query: 482 SKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSG 541
             L   D+S N +  +   +         L      L       +LSQN L  +  +   
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQ----TL-------VLSQNHLRSMQKTGEI 382

Query: 542 IQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQL 601
           +              L  L+ S +  +    +      +R ++LSS  +           
Sbjct: 383 LLT---------LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR---------- 423

Query: 602 ESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNF 661
               +                    L+VL++ NN+         +    L+ L +  N  
Sbjct: 424 ---VVKTCIPQT-------------LEVLDVSNNNLD-SFS---LFLPRLQELYISRNKL 463

Query: 662 TGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGD 712
              LP +      L ++ + +N L             L  + +  N +   
Sbjct: 464 K-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (404), Expect = 3e-41
 Identities = 94/536 (17%), Positives = 191/536 (35%), Gaps = 56/536 (10%)

Query: 230 NSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYL 288
              ++++ L LS  ++ +     +   +++ VL L S++    + +    F  L +L +L
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI---NTIEGDAFYSLGSLEHL 79

Query: 289 DLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSI 347
           DL  N            L+SL++L+L  N + +  + +   + +NL  + + +      I
Sbjct: 80  DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 348 T-GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSC 406
                A L+ S+  L++ +  L     +S   + ++  ++L   + +  +    DI SS 
Sbjct: 140 RRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS- 197

Query: 407 ISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSN 466
               +   ++    +     S +   +    +       S L   S   L  L R +L  
Sbjct: 198 ----VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE- 252

Query: 467 NTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWL 526
                 LSE+   + +     D + +   +      +    + +L +   +L        
Sbjct: 253 ------LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 527 LSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATG----LRT 582
                +  + +  S +   VP  F +    L FL+ S + +  E    S   G    L+T
Sbjct: 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 583 VDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIP 642
           + LS N            L S+  +        +          L  L++  N+F   +P
Sbjct: 366 LVLSQN-----------HLRSMQKTGEILLTLKN----------LTSLDISRNTFH-PMP 403

Query: 643 DCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSL 702
           D       +R LNL +      +   +    +L +L +  N+L       L     L  L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPR---LQEL 456

Query: 703 NMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNL 758
            +  N+    +P      F  ++++ +  N            LTSLQ + L  N  
Sbjct: 457 YISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (348), Expect = 4e-34
 Identities = 104/652 (15%), Positives = 193/652 (29%), Gaps = 150/652 (23%)

Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSY 316
            +  V D  S  F     + S +   + +  LDL  N         L+   +L+ L L  
Sbjct: 5   DASGVCDGRSRSFTS---IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL-EGQIPRS 375
           +  N+   +   S  +L H+ L  N L    + +   LS S++ L+L         +   
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSL 118

Query: 376 FGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSL 435
           F  L NL+ + + +V+   +I                         F  LTS       L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRR---------------------IDFAGLTS-------L 150

Query: 436 DSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT 495
           + L +   S+      SL  +  +  + L  +    +L EI    LS +   ++    L 
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209

Query: 496 LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASP 555
                       L   ++ S           L+       D S + +      +      
Sbjct: 210 ------RFQFSPLPVDEVSSPM-------KKLAFRGSVLTDESFNELL-----KLLRYIL 251

Query: 556 QLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSI 615
           +L  + F +  +NG + + +           S+ +S    + +  +  + +        +
Sbjct: 252 ELSEVEFDDCTLNG-LGDFNP--------SESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 616 SPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSL 675
           S V     +  ++ + +EN+           +   L  L+L  N        +    G+ 
Sbjct: 303 STVYSLLEK--VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 676 TLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFD 735
               LQ   LS          N L S+   G                             
Sbjct: 361 P--SLQTLVLSQ---------NHLRSMQKTGEILLT------------------------ 385

Query: 736 GQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSC 795
                    L +L  LD+  N     +P        M  ++         ++   +    
Sbjct: 386 ---------LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN---------LSSTGI--RV 424

Query: 796 LPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLN 855
           +                          I   + ++D+S NN      +    L  L+ L 
Sbjct: 425 VKT-----------------------CIPQTLEVLDVSNNNLD-SFSL---FLPRLQELY 457

Query: 856 LSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYN 907
           +S N     +PD+      + V+  S NQL          LT L  + L  N
Sbjct: 458 ISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  129 bits (326), Expect = 2e-31
 Identities = 71/383 (18%), Positives = 129/383 (33%), Gaps = 37/383 (9%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
                  LN L++   S      + L S+  + +L L  +    ++      LS ++YL+
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 189 LVEN----------SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVL 238
           L +               V +             D     L K   + L ++ +      
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 239 RLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSL--VLSWVF-GLSNLVYLDLGSNDF 295
                  +      +  +  +  + +      Q  L   LS V+  L  +  + + ++  
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 296 QGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASF---SNLVHISLRSNSLQ--GSITG 349
              +P    Q+L SL  LDLS N          A      +L  + L  N L+       
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 350 FLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISD 409
            L  L  ++  LD+S       +P S      +R ++LS           + +  +CI  
Sbjct: 382 ILLTLK-NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG--------IRVVKTCIPQ 431

Query: 410 RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTL 469
            LE  D++      +L S       L  L++S N +  L  +SL     L  + +S N L
Sbjct: 432 TLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQL 485

Query: 470 KGYLSEIHLANLSKLVSFDVSGN 492
           K  + +     L+ L    +  N
Sbjct: 486 K-SVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (303), Expect = 2e-28
 Identities = 71/368 (19%), Positives = 132/368 (35%), Gaps = 29/368 (7%)

Query: 554 SPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISFQ----LESIDLS 607
           +  +  L+ S ++I   I +  L     L+ + L S+ ++ T+   +F     LE +DLS
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLS 82

Query: 608 NNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY-LRVLNLGNNNFTGNLP 666
           +N  S S+S      +   L+ LNL  N +           L  L+ L +GN      + 
Sbjct: 83  DNHLS-SLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 667 P-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMV 725
                 L SL  L ++  SL     +SL +   +  L +  ++ +  +     +  SS+ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 726 ILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPG 785
            L LR         + L        +       S    +  + L  ++     L  +   
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL--SEVE 257

Query: 786 ITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEV 845
             DC+L       P           +V +  ++E  TI  L     + +     ++    
Sbjct: 258 FDDCTLNGLGDFNPSESD-------VVSELGKVETVTIRRL----HIPQFYLFYDLSTVY 306

Query: 846 TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI---PRSVSNLTFLNLL 902
           + L  ++ + +  +            +KS+E +D S N + EE             L  L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 903 NLSYNYLS 910
            LS N+L 
Sbjct: 367 VLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  117 bits (294), Expect = 2e-27
 Identities = 97/590 (16%), Positives = 178/590 (30%), Gaps = 131/590 (22%)

Query: 337 SLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDI 396
             RS S     T   + L+A+++ LDLS  ++            NL+ + L     S  I
Sbjct: 11  DGRSRSF----TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK----SSRI 62

Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL 456
           + I                      F  L S       L+ L LS N +S L  S  G L
Sbjct: 63  NTIEG------------------DAFYSLGS-------LEHLDLSDNHLSSLSSSWFGPL 97

Query: 457 SSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQS 515
           SSL+ + L  N  +         NL+ L +  +       ++          L +L++++
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 516 CHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-L 574
             L                        Q             ++ L    S     +    
Sbjct: 158 LSL---------------------RNYQSQSLKSI----RDIHHLTLHLSESAFLLEIFA 192

Query: 575 SKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLEN 634
              + +R ++L   NL+         ++ +       +   S +        L++L    
Sbjct: 193 DILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 635 NSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLS 694
                E  DC +N L     +   +              ++  LH+ +  L   +    S
Sbjct: 252 ELSEVEFDDCTLNGL----GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 695 NCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLG 754
              ++  + ++ ++                    +  +            L SL+ LDL 
Sbjct: 308 LLEKVKRITVENSKVF-----------------LVPCSFSQH--------LKSLEFLDLS 342

Query: 755 YNNLSGAIPK---CISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFL 811
            N +     K   C     ++ T+   L   H  +                    +   +
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLV--LSQNH--LRSMQ----------------KTGEI 382

Query: 812 VMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGA 871
           ++  K L           +D+S+N F   +P        +R LNLS       +      
Sbjct: 383 LLTLKNLTS---------LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CI 429

Query: 872 MKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQS 921
            +++EV+D SNN L          L  L  L +S N L   +P ++    
Sbjct: 430 PQTLEVLDVSNNNLDS-FS---LFLPRLQELYISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 3e-27
 Identities = 59/357 (16%), Positives = 126/357 (35%), Gaps = 18/357 (5%)

Query: 579 GLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638
                D  S + +     ++  ++S+DLS N  +  I           LQVL L+++  +
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACA-NLQVLILKSSRIN 63

Query: 639 GEIPDCWMNFLYLRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSG-RIPESLSNC 696
               D + +   L  L+L +N+ + +L  S  G L SL  L+L  N      +     N 
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 697 NRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756
             L +L +   +   +I        +S+  L +++          L  +  +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 757 NLSGAIPKCISNLSAMVTVD--------YPLGDTHPGITDCSLYRSCLPRPRSFSDPIEK 808
             +  +      LS++  ++        +             + +    R    +D    
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF-RGSVLTDESFN 241

Query: 809 AFLVMKGKELEYSTI----LYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR 864
             L +    LE S +      L  L D + +       +   + V +R L++   +    
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 865 IPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQS 921
           +      ++ ++ I   N+++         +L  L  L+LS N +  E   ++  + 
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (281), Expect = 8e-26
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 19/243 (7%)

Query: 127 NPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQY 186
               +    +  L +        +      + K+K + +  +    +      +L  L++
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 187 LDLVEN--SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQ 244
           LDL EN   E Y+ N +       LQ L L   +L         + +L +L  L +S   
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 245 LDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF--GLSNLVYLDLGSNDFQGSIPVG 302
                P        +  L+LSS         +  V       L  LD+ +N+   S  + 
Sbjct: 399 FHPM-PDSCQWPEKMRFLNLSSTG-------IRVVKTCIPQTLEVLDVSNNNLD-SFSL- 448

Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLD 362
              L  L+ L +S N    ++P+  + F  L+ + +  N L+    G    L+ S++ + 
Sbjct: 449 --FLPRLQELYISRNKL-KTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLT-SLQKIW 503

Query: 363 LSS 365
           L +
Sbjct: 504 LHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (277), Expect = 3e-25
 Identities = 75/508 (14%), Positives = 155/508 (30%), Gaps = 107/508 (21%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
             ++ SL LS N I+ +    L   ++L+ ++L ++ +   +      +L  L   D+S 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 492 NALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
           N L+  +   W  P   L+ L+L                               T+    
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPY-------------------------QTLGV-- 115

Query: 551 WEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQ----LESIDL 606
                                PNL+    L+T+ + +      +  I F     L  +++
Sbjct: 116 -----------------TSLFPNLTN---LQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 607 SNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLP 666
              +   +        +R ++  L L  +  +  +         +R L L + N      
Sbjct: 156 KALSLR-NYQSQSLKSIR-DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 667 PSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVI 726
             L      + +       S    ES +   +L+   ++ ++          +  +   +
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF-------DDCTLNGL 266

Query: 727 LNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGI 786
            +   +  D           +++ L +    L   +    S L  +  +           
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT---------- 316

Query: 787 TDCSLYRSCLPR--PRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEI--- 841
               +  S +                     K LE+         +DLS+N    E    
Sbjct: 317 ----VENSKVFLVPCSFSQHL----------KSLEF---------LDLSENLMVEEYLKN 353

Query: 842 PVEVTDLVALRSLNLSYNHFS--GRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFL 899
                   +L++L LS NH     +  + +  +K++  +D S N     +P S      +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKM 412

Query: 900 NLLNLSYNYLSGEIPTS--TQLQSFDAS 925
             LNLS   +   + T     L+  D S
Sbjct: 413 RFLNLSSTGIR-VVKTCIPQTLEVLDVS 439

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (395), Expect = 9e-41
 Identities = 100/512 (19%), Positives = 174/512 (33%), Gaps = 98/512 (19%)

Query: 251 PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
                ++      L                 L  +  L             G++ L +L 
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRL--GIKSIDGVEYLNNLT 71

Query: 311 HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEG 370
            ++ S N      P  L + + LV I + +N +       LANL+ ++  L L + Q+  
Sbjct: 72  QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLT-NLTGLTLFNNQITD 126

Query: 371 QIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIG 430
             P     L NL  + LS   +S      +   S   S  L+     G ++       + 
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISD-----ISALSGLTS--LQQLSF-GNQVTD--LKPLA 174

Query: 431 HFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS 490
           +  +L+ L +S N +S +  S L  L++LE ++ +NN +        L  L+ L    ++
Sbjct: 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLN 229

Query: 491 GNALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPAR 549
           GN L        I     L  L                       LD++ + I +     
Sbjct: 230 GNQLKD------IGTLASLTNLT---------------------DLDLANNQISN----- 257

Query: 550 FWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSN 608
                                +  LS  T L  + L +N +S   PL     L +++L+ 
Sbjct: 258 ---------------------LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296

Query: 609 NAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPS 668
           N     ISP+        L  L L  N+ S   P    +   L+ L   NN  +     S
Sbjct: 297 NQLE-DISPI---SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSS 348

Query: 669 LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILN 728
           L +L ++  L    N +S   P  L+N  R+  L ++   ++           +++ I N
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV----NYKANVSIPN 402

Query: 729 LRSNIFDGQ-FPTELCFLTSLQILDLGYNNLS 759
              N+      P  +    S    D+ +N  S
Sbjct: 403 TVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  148 bits (376), Expect = 3e-38
 Identities = 90/495 (18%), Positives = 184/495 (37%), Gaps = 59/495 (11%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
            +           L   +    +      + ++  L     G K +    +  L+ L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQI 73

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
           +   N    + +++ L  L+ L  + +    +         + +L++L  L L   Q+  
Sbjct: 74  NFSNNQ---LTDITPLKNLTKLVDILMNNNQIAD----ITPLANLTNLTGLTLFNNQIT- 125

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
               P+ N+++++ L+LSSN        +S + GL++L  L  G+     +    L NLT
Sbjct: 126 -DIDPLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFGNQV---TDLKPLANLT 177

Query: 308 SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQ 367
           +L  LD+S N   S I   LA  +NL  +   +N +       L  L+ +++ L L+  Q
Sbjct: 178 TLERLDISSNKV-SDISV-LAKLTNLESLIATNNQISDIT--PLGILT-NLDELSLNGNQ 232

Query: 368 LEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS 427
           L+     +   L NL ++ L++ +    IS +  + S      L    +   +I     S
Sbjct: 233 LKD--IGTLASLTNLTDLDLANNQ----ISNLAPL-SGLTK--LTELKLGANQISN--IS 281

Query: 428 QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSF 487
            +    +L +L L+ N +  + P  +  L +L  + L  N +        +++L+KL   
Sbjct: 282 PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRL 336

Query: 488 DVSGNALTLKVGPDWIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQ 543
               N ++       +        +  L      +    P   L++  +  L ++     
Sbjct: 337 FFYNNKVS------DVSSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQAWT 388

Query: 544 DTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF---Q 600
           +         S      N + + I      +S        D++ N  S     +S+   Q
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQ 445

Query: 601 LESIDLSNNAFSGSI 615
             +I      FSG++
Sbjct: 446 PVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (352), Expect = 4e-35
 Identities = 96/489 (19%), Positives = 172/489 (35%), Gaps = 77/489 (15%)

Query: 427 SQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVS 486
                        L   +++  +      L  +  +      +K  +  +    L+ L  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-IDGV--EYLNNLTQ 72

Query: 487 FDVSGNALTLKVGPDWIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGI 542
            + S N LT       I P     +L  + + +  +    P   L+   L  L +  + I
Sbjct: 73  INFSNNQLTD------ITPLKNLTKLVDILMNNNQIADITPLANLTN--LTGLTLFNNQI 124

Query: 543 QDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QL 601
            D  P    +    L  L  S++ I+  I  LS  T L+ +    N ++   PL +   L
Sbjct: 125 TDIDPL---KNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLKPLANLTTL 179

Query: 602 ESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNF 661
           E +D+S+N  S  IS +        L+ L   NN  S   P        L  L+L  N  
Sbjct: 180 ERLDISSNKVS-DISVL---AKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQL 233

Query: 662 TGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
                 +L SL +LT L L  N +S   P  LS   +L  L +  NQ S   P       
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL---AGL 286

Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
           +++  L L  N  +    + +  L +L  L L +NN+S   P  +S+L+ +  +     +
Sbjct: 287 TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF--FYN 340

Query: 782 THPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEI 841
               ++D            S ++             + +         +    N  S   
Sbjct: 341 NK--VSD----------VSSLANL----------TNINW---------LSAGHNQISDLT 369

Query: 842 PVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNL 901
           P+   +L  +  L L+   ++   P +  A  SI     +        P ++S+      
Sbjct: 370 PLA--NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALI-APATISDGGSYTE 425

Query: 902 LNLSYNYLS 910
            ++++N  S
Sbjct: 426 PDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (335), Expect = 6e-33
 Identities = 88/474 (18%), Positives = 167/474 (35%), Gaps = 99/474 (20%)

Query: 308 SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQ 367
            L    ++ +   + I     + +  +   L   ++  +++    +L   +  L      
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLD-QVTTLQADRLG 57

Query: 368 LEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS 427
           +  +       L NL +I+ S+ +++ DI+ +                            
Sbjct: 58  I--KSIDGVEYLNNLTQINFSNNQLT-DITPL---------------------------- 86

Query: 428 QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSF 487
              +   L  + +++N I+ + P  L  L++L  + L NN +        L NL+ L   
Sbjct: 87  --KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRL 139

Query: 488 DVSGNALTLKVGPDWIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQ 543
           ++S N ++       I        L++L   +                L  L        
Sbjct: 140 ELSSNTISD------ISALSGLTSLQQLSFGNQVTDLK---------PLANL-------- 176

Query: 544 DTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLE 602
                        L  L+ S+++++ +I  L+K T L ++  ++N +S   PL     L+
Sbjct: 177 -----------TTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTNLD 224

Query: 603 SIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT 662
            + L+ N     I  +        L  L+L NN  S   P        L  L LG N  +
Sbjct: 225 ELSLNGNQLK-DIGTLASLT---NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS 278

Query: 663 GNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFS 722
                 L  L +LT L L +N L       +SN   L  L +  N  S   P       +
Sbjct: 279 N--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPV---SSLT 331

Query: 723 SMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
            +  L   +N       + L  LT++  L  G+N +S   P  ++NL+ +  + 
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (331), Expect = 2e-32
 Identities = 84/476 (17%), Positives = 155/476 (32%), Gaps = 77/476 (16%)

Query: 437 SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTL 496
           +       I+ +       L+   + VL    +      +   +L ++ +       +  
Sbjct: 6   ATITQDTPINQIFT--DTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKS 60

Query: 497 KVGPDWIPPFQ----LEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE 552
                 I   +    L +++  +  L    P   L++  L  + ++ + I D  P     
Sbjct: 61  ------IDGVEYLNNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADITPL---A 109

Query: 553 ASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAF 611
               L  L   N++I   I  L   T L  ++LSSN +S    L     L+ +   N   
Sbjct: 110 NLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT 168

Query: 612 SGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGS 671
                  L       L+ L++ +N  S            L  L   NN  +      LG 
Sbjct: 169 DLKPLANLTT-----LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGI 219

Query: 672 LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRS 731
           L +L  L L  N L      +L++   L  L++  NQ S   P       + +  L L +
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGA 274

Query: 732 NIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSL 791
           N       + L  LT+L  L+L  N L    P  ISNL  +  +          +   ++
Sbjct: 275 NQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT---------LYFNNI 321

Query: 792 YRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVAL 851
                      SD    + L     +L+          +    N  S      + +L  +
Sbjct: 322 -----------SDISPVSSL----TKLQR---------LFFYNNKVSD--VSSLANLTNI 355

Query: 852 RSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYN 907
             L+  +N  S   P  +  +  I  +  ++   +       +N++  N +     
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (291), Expect = 3e-27
 Identities = 86/394 (21%), Positives = 142/394 (36%), Gaps = 64/394 (16%)

Query: 535 LDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTL 594
             + ++ + DTV         Q+  L      I   I  +     L  ++ S+N L+   
Sbjct: 29  TVLGKTNVTDTVS---QTDLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 595 PLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV 653
           PL +  +L  I ++NN  +  I+P+        L  L L NN  +   P    N   L  
Sbjct: 85  PLKNLTKLVDILMNNNQIA-DITPL---ANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 138

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI 713
           L L +N  +     +L  L SL  L            + L+N   L  L++  N+ S DI
Sbjct: 139 LELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVS-DI 192

Query: 714 PTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMV 773
                 K +++  L   +N      P  L  LT+L  L L  N L       +++L+ + 
Sbjct: 193 SVL--AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 774 TVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLS 833
            +D  L +    I++                P+          +L           + L 
Sbjct: 247 DLD--LANNQ--ISN--------------LAPLSGL------TKLTE---------LKLG 273

Query: 834 KNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV 893
            N  S   P+    L AL +L L+ N         I  +K++  +    N +S+  P  V
Sbjct: 274 ANQISNISPLA--GLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--V 327

Query: 894 SNLTFLNLLNLSYNYLSG--EIPTSTQLQSFDAS 925
           S+LT L  L    N +S    +   T +    A 
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAG 361

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (289), Expect = 4e-27
 Identities = 78/376 (20%), Positives = 131/376 (34%), Gaps = 65/376 (17%)

Query: 555 PQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSG 613
            +        + +     + +    + T+      +     +     L  I+ SNN  + 
Sbjct: 24  AEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT- 81

Query: 614 SISPV--LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGS 671
            I+P+  L       L  + + NN  +   P    N   L  L L NN  T      L +
Sbjct: 82  DITPLKNLTK-----LVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD--IDPLKN 132

Query: 672 LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRS 731
           L +L  L L  N++S     +LS    L  L+  GNQ +   P       +++  L++ S
Sbjct: 133 LTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKPL---ANLTTLERLDISS 186

Query: 732 NIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSL 791
           N       + L  LT+L+ L    N +S   P  +  L+ +  +   L      + D   
Sbjct: 187 NKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELS--LNGNQ--LKDIG- 237

Query: 792 YRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVAL 851
                         +           L           +DL+ N  S   P+    L  L
Sbjct: 238 -------------TLASL------TNLTD---------LDLANNQISNLAPLS--GLTKL 267

Query: 852 RSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG 911
             L L  N  S      +  + ++  ++ + NQL +  P  +SNL  L  L L +N +S 
Sbjct: 268 TELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 912 EIPTS--TQLQSFDAS 925
             P S  T+LQ     
Sbjct: 324 ISPVSSLTKLQRLFFY 339

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (252), Expect = 2e-22
 Identities = 76/370 (20%), Positives = 128/370 (34%), Gaps = 91/370 (24%)

Query: 563 SNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPV--L 619
            ++ IN +I   +         L   N++ T+      Q+ ++         SI  V  L
Sbjct: 10  QDTPIN-QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDGVEYL 67

Query: 620 CNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLH 679
            N     L  +N  NN  +   P    N   L  + + NN         L +L +LT L 
Sbjct: 68  NN-----LTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 680 LQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFP 739
           L  N ++    + L N   L  L +  N  S                             
Sbjct: 119 LFNNQITD--IDPLKNLTNLNRLELSSNTISD---------------------------I 149

Query: 740 TELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRP 799
           + L  LTSLQ L  G N ++   P  ++NL+ +  +D  +      ++D S         
Sbjct: 150 SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLD--ISSNK--VSDIS--------- 193

Query: 800 RSFSDPIEKAFLVMKGKELEYSTILYLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLS 857
                                  +  L  L  +  + N  S   P+    L  L  L+L+
Sbjct: 194 ----------------------VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLN 229

Query: 858 YNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS- 916
            N        ++ ++ ++  +D +NNQ+S   P  +S LT L  L L  N +S   P + 
Sbjct: 230 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAG 285

Query: 917 -TQLQSFDAS 925
            T L + + +
Sbjct: 286 LTALTNLELN 295

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 3e-12
 Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 82/306 (26%)

Query: 625 GELQVLN-LENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKN 683
           G L      ++   +    D            LG  N T     S   L  +T L   + 
Sbjct: 1   GPLGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRL 56

Query: 684 SLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELC 743
            +     + +   N L  +N   NQ +   P                           L 
Sbjct: 57  GIK--SIDGVEYLNNLTQINFSNNQLTDITP---------------------------LK 87

Query: 744 FLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFS 803
            LT L  + +  N ++   P  ++NL+ +  +   L +    ITD               
Sbjct: 88  NLTKLVDILMNNNQIADITP--LANLTNLTGLT--LFNNQ--ITD--------------- 126

Query: 804 DPIEKAFLVMKGKELEYSTILYLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHF 861
                              +  L  L  ++LS N  S      ++ L +L+ L+      
Sbjct: 127 ----------------IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVT 168

Query: 862 SGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS--TQL 919
                  +  + ++E +D S+N++S+     ++ LT L  L  + N +S   P    T L
Sbjct: 169 D---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNL 223

Query: 920 QSFDAS 925
                +
Sbjct: 224 DELSLN 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 2e-40
 Identities = 81/367 (22%), Positives = 152/367 (41%), Gaps = 37/367 (10%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
                       L   S    +      +  +  L ++G     +    +  L+ L+YL+
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLEYLN 72

Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF 248
           L  N    + ++S L  L  L +L +G  N         A+ +L++LR L L+   +   
Sbjct: 73  LNGNQ---ITDISPLSNLVKLTNLYIGT-NKITDIS---ALQNLTNLRELYLNEDNISDI 125

Query: 249 HPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTS 308
              P+ N++ +  L+L +N    N   LS +  ++ L YL +  +  +   P  + NLT 
Sbjct: 126 --SPLANLTKMYSLNLGANH---NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTD 178

Query: 309 LRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL 368
           L  L L+YN      P  LAS ++L + +   N +       +AN++  +  L + + ++
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMT-RLNSLKIGNNKI 233

Query: 369 EGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQ 428
               P     L  L  + +        IS+I +         L+  ++   +I     S 
Sbjct: 234 TDLSP--LANLSQLTWLEIGT----NQISDI-NAVKDLTK--LKMLNVGSNQISD--ISV 282

Query: 429 IGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFD 488
           + +   L+SLFL++N +       +GGL++L  + LS N +        LA+LSK+ S D
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI---RPLASLSKMDSAD 339

Query: 489 VSGNALT 495
            +   + 
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (328), Expect = 6e-33
 Identities = 85/437 (19%), Positives = 163/437 (37%), Gaps = 97/437 (22%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL 219
              L    A    + P    +L++     L + S   V ++     L  +  L + G  +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKAS---VTDVVTQEELESITKLVVAGEKV 56

Query: 220 GKAFDWSL-AINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSW 278
                 S+  I  L++L  L L+G Q+      P+ N+  ++ L + +N+       +S 
Sbjct: 57  A-----SIQGIEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITD----ISA 105

Query: 279 VFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL 338
           +  L+NL  L L  ++     P  L NLT +  L+L  N   S +   L++ + L ++++
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTV 162

Query: 339 RSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISE 398
             + ++      +ANL+  +  L L+  Q+E   P     L +L   +    +    I++
Sbjct: 163 TESKVKDVTP--IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ----ITD 213

Query: 399 ILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSS 458
           I                           + + +   L+SL + +N I+ L P  L  LS 
Sbjct: 214 I---------------------------TPVANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 459 LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF----QLEKLDLQ 514
           L  + +  N +   ++   + +L+KL   +V  N ++       I       QL  L L 
Sbjct: 245 LTWLEIGTNQISD-INA--VKDLTKLKMLNVGSNQIS------DISVLNNLSQLNSLFLN 295

Query: 515 SCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNL 574
           +  LG           V+G L                     L  L  S + I   I  L
Sbjct: 296 NNQLG------NEDMEVIGGL-------------------TNLTTLFLSQNHITD-IRPL 329

Query: 575 SKATGLRTVDLSSNNLS 591
           +  + + + D ++  + 
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (325), Expect = 2e-32
 Identities = 76/406 (18%), Positives = 148/406 (36%), Gaps = 69/406 (16%)

Query: 262 LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS 321
           L       +Q    +     L+  +   L        +    + L S+  L ++     +
Sbjct: 5   LATLPAPINQ----IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV-A 57

Query: 322 SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCN 381
           SI   +   +NL +++L  N +       L+NL   +  L + + ++      +   L N
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDIS--PLSNLV-KLTNLYIGTNKIT--DISALQNLTN 111

Query: 382 LREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLS 441
           LRE+ L++  +S DIS + ++        + S ++        L+  + +   L+ L ++
Sbjct: 112 LRELYLNEDNIS-DISPLANLTK------MYSLNLGANHNLSDLSP-LSNMTGLNYLTVT 163

Query: 442 HNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPD 501
            + +  + P  +  L+ L  + L+ N ++       LA+L+ L  F    N +T      
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQIT------ 212

Query: 502 WIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQL 557
            I P     +L  L + +  +    P   LSQ  L +L+I  + I D             
Sbjct: 213 DITPVANMTRLNSLKIGNNKITDLSPLANLSQ--LTWLEIGTNQISD------------- 257

Query: 558 YFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSIS 616
                        I  +   T L+ +++ SN +S    L +  QL S+ L+NN       
Sbjct: 258 -------------INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 617 PVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT 662
            V+       L  L L  N  +   P    +   +   +  N    
Sbjct: 305 EVIGG--LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (325), Expect = 2e-32
 Identities = 79/484 (16%), Positives = 149/484 (30%), Gaps = 143/484 (29%)

Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
           G + L  L    N           +L       L        +        ++  + +  
Sbjct: 1   GAATLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG 53

Query: 341 NSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
             +  SI G +  L+ ++E L+L+  Q+    P     L  L  + +   K    I++I 
Sbjct: 54  EKVA-SIQG-IEYLT-NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK----ITDI- 103

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLE 460
                                     S + +  +L  L+L+ ++IS + P  L  L+ + 
Sbjct: 104 --------------------------SALQNLTNLRELYLNEDNISDISP--LANLTKMY 135

Query: 461 RVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF----QLEKLDLQSC 516
            + L  N     LS   L+N++ L    V+ + +        + P      L  L L   
Sbjct: 136 SLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYN 187

Query: 517 HLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSK 576
            +    P   L+   L Y     + I D                          I  ++ 
Sbjct: 188 QIEDISPLASLTS--LHYFTAYVNQITD--------------------------ITPVAN 219

Query: 577 ATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENN 635
            T L ++ + +N ++   PL +  QL  +++  N  S  I+               +++ 
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS-DINA--------------VKDL 264

Query: 636 SFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSN 695
           +              L++LN+G+N  +      L +L  L  L L  N L     E +  
Sbjct: 265 T-------------KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 696 CNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGY 755
              L +L +  N  + DI                            L  L+ +   D   
Sbjct: 310 LTNLTTLFLSQNHIT-DIR--------------------------PLASLSKMDSADFAN 342

Query: 756 NNLS 759
             + 
Sbjct: 343 QVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 3e-31
 Identities = 84/460 (18%), Positives = 148/460 (32%), Gaps = 121/460 (26%)

Query: 435 LDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNAL 494
             +L      I+ + P     L+   R VL   ++      +    L  +    V+G  +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV 56

Query: 495 TLKVGPDWIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
                   I        LE L+L    +    P   L                       
Sbjct: 57  AS------IQGIEYLTNLEYLNLNGNQITDISPLSNL----------------------- 87

Query: 551 WEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNN 609
                +L  L    ++I  +I  L   T LR + L+ +N+S   PL +  ++ S++L  N
Sbjct: 88  ----VKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142

Query: 610 AFSGSISPV--LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP 667
                +SP+  +       L  L +  +      P    N   L  L+L  N        
Sbjct: 143 HNLSDLSPLSNMTG-----LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--IS 193

Query: 668 SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727
            L SL SL       N ++      ++N  RL SL +  N+ + D+        S +  L
Sbjct: 194 PLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKIT-DLSPL--ANLSQLTWL 248

Query: 728 NLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787
            + +N         +  LT L++L++G N +S      IS L+ +               
Sbjct: 249 EIGTNQISD--INAVKDLTKLKMLNVGSNQISD-----ISVLNNL--------------- 286

Query: 788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTD 847
                                        +L           + L+ N    E    +  
Sbjct: 287 ----------------------------SQLNS---------LFLNNNQLGNEDMEVIGG 309

Query: 848 LVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE 887
           L  L +L LS NH +   P  + ++  ++  DF+N  + +
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (312), Expect = 9e-31
 Identities = 71/406 (17%), Positives = 151/406 (37%), Gaps = 64/406 (15%)

Query: 508 LEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRI 567
              L      +   FP   L++       + ++ + D V     E    +  L  +  ++
Sbjct: 2   AATLATLPAPINQIFPDADLAE--GIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 568 NGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGE 626
              I  +   T L  ++L+ N ++   PL +  +L ++ +  N  +  IS +        
Sbjct: 57  A-SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISAL---QNLTN 111

Query: 627 LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS 686
           L+ L L  ++ S   P    N   +  LNLG N+   +    L ++  L  L + ++ + 
Sbjct: 112 LRELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK 168

Query: 687 GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLT 746
                 ++N   L SL+++ NQ     P       +S+       N       T +  +T
Sbjct: 169 D--VTPIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITD--ITPVANMT 221

Query: 747 SLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPI 806
            L  L +G N ++   P  ++NLS +  ++  +G     I+D                  
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLE--IGTN--QISD------------------ 257

Query: 807 EKAFLVMKGKELEYSTILYLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR 864
                         + +  L  L  +++  N  S    +   +L  L SL L+ N     
Sbjct: 258 -------------INAVKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNE 302

Query: 865 IPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
             + IG + ++  +  S N +++  P  +++L+ ++  + +   + 
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (310), Expect = 1e-30
 Identities = 78/357 (21%), Positives = 139/357 (38%), Gaps = 40/357 (11%)

Query: 427 SQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVS 486
                        L   S++ ++      L S+ ++V++   +   +  I    L+ L  
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-IQGI--EYLTNLEY 70

Query: 487 FDVSGNALTLKVGPDWIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGI 542
            +++GN +T       I P     +L  L + +  +        L+   L  L ++   I
Sbjct: 71  LNLNGNQITD------ISPLSNLVKLTNLYIGTNKITDISALQNLTN--LRELYLNEDNI 122

Query: 543 QDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QL 601
            D  P        ++Y LN   +    ++  LS  TGL  + ++ + +    P+ +   L
Sbjct: 123 SDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDL 179

Query: 602 ESIDLSNNAFSGSISPV--LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNN 659
            S+ L+ N     ISP+  L +     L       N  +   P   M    L  L +GNN
Sbjct: 180 YSLSLNYNQIE-DISPLASLTS-----LHYFTAYVNQITDITPVANMT--RLNSLKIGNN 231

Query: 660 NFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGE 719
             T      L +L  LT L +  N +S     ++ +  +L  LN+  NQ S DI      
Sbjct: 232 KITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISVL--N 284

Query: 720 KFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
             S +  L L +N    +    +  LT+L  L L  N+++   P  +++LS M + D
Sbjct: 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.6 bits (218), Expect = 1e-18
 Identities = 56/350 (16%), Positives = 110/350 (31%), Gaps = 80/350 (22%)

Query: 579 GLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSF 637
           G  T+      ++   P     +     L   + +  ++          +  L +     
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELE----SITKLVVAGEKV 56

Query: 638 SGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCN 697
           +  I         L  LNL  N  T      L +L  LT L++  N ++     +L N  
Sbjct: 57  A-SIQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 698 RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN 757
            L  L ++ +  S   P                           L  LT +  L+LG N+
Sbjct: 111 NLRELYLNEDNISDISP---------------------------LANLTKMYSLNLGANH 143

Query: 758 LSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE 817
                   +SN++ +  +   + ++   + D                PI          +
Sbjct: 144 NLS-DLSPLSNMTGLNYLT--VTESK--VKD--------------VTPIANL------TD 178

Query: 818 LEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEV 877
           L           + L+ N      P+    L +L       N  +   P  +  M  +  
Sbjct: 179 LYS---------LSLNYNQIEDISPLA--SLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 878 IDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG--EIPTSTQLQSFDAS 925
           +   NN++++  P  ++NL+ L  L +  N +S    +   T+L+  +  
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  142 bits (361), Expect = 2e-36
 Identities = 112/631 (17%), Positives = 190/631 (30%), Gaps = 185/631 (29%)

Query: 280 FGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLR 339
              + L      S++    +PV  +N+ S      +++++  + P        +    LR
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 340 SNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
               +                L+L++  L   +P       +L  +  S   ++      
Sbjct: 67  DCLDR------------QAHELELNNLGLS-SLPELPP---HLESLVASCNSLT------ 104

Query: 400 LDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSL 459
                                    L       KSL     +  ++S L P        L
Sbjct: 105 ------------------------ELPELPQSLKSLLVDNNNLKALSDLPPL-------L 133

Query: 460 ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG 519
           E + +SNN L+  L E+   N S L   DV  N+L     PD  P   LE +   +  L 
Sbjct: 134 EYLGVSNNQLE-KLPEL--QNSSFLKIIDVDNNSLK--KLPDLPP--SLEFIAAGNNQLE 186

Query: 520 PTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATG 579
                                                             E+P L     
Sbjct: 187 --------------------------------------------------ELPELQNLPF 196

Query: 580 LRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
           L  +   +N+L   LP +   LESI   NN       P L N     L  +  +NN    
Sbjct: 197 LTAIYADNNSLK-KLPDLPLSLESIVAGNNILE--ELPELQN--LPFLTTIYADNNLLK- 250

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRL 699
            +PD   +   L  LN+ +N  T +LP    SL  L +     + LS   P        L
Sbjct: 251 TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------L 299

Query: 700 VSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
             LN   N+        + +   S+  LN+ +N    + P        L+ L   +N+L+
Sbjct: 300 YYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA 350

Query: 760 GAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELE 819
             +P+   NL  +             +    L        R F D  E            
Sbjct: 351 -EVPELPQNLKQLH------------VEYNPL--------REFPDIPES----------- 378

Query: 820 YSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVID 879
                    + DL  N+   E+P        L+ L++  N      PD      S+E + 
Sbjct: 379 ---------VEDLRMNSHLAEVPEL---PQNLKQLHVETNPLR-EFPDIPE---SVEDLR 422

Query: 880 FSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
            ++ ++ +    +      L      +++  
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (347), Expect = 2e-34
 Identities = 101/555 (18%), Positives = 187/555 (33%), Gaps = 110/555 (19%)

Query: 205 GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDL 264
             + LQ       NL +     +   ++ S      +  + +   PP       ++V  L
Sbjct: 9   SNTFLQEPLRHSSNLTE---MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 265 SSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIP 324
                                  L+L +     S+P   +    L  L  S N   + +P
Sbjct: 66  RDCL-------------DRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSL-TELP 107

Query: 325 NWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLRE 384
               S  +L+  +    +L         +L   +E L +S+ QLE ++P        L+ 
Sbjct: 108 ELPQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKI 157

Query: 385 ISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNS 444
           I + +      + ++ D+  S     LE       ++      ++ +   L +++  +NS
Sbjct: 158 IDVDNNS----LKKLPDLPPS-----LEFIAAGNNQL--EELPELQNLPFLTAIYADNNS 206

Query: 445 ISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIP 504
           +  L         SLE +V  NN L+  L E+   NL  L +     N L     PD  P
Sbjct: 207 LKKLPDL----PLSLESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLK--TLPDLPP 257

Query: 505 PFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSN 564
              LE L+++  +L                                 E    L FL+ S 
Sbjct: 258 --SLEALNVRDNYL-----------------------------TDLPELPQSLTFLDVSE 286

Query: 565 SRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMR 624
           +  +  +  L     L  ++ SSN +  +L  +   LE +++SNN     +  +      
Sbjct: 287 NIFS-GLSEL--PPNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLI-ELPALPPR--- 338

Query: 625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNS 684
             L+ L    N  + E+P+   N   L+ L++  N      P    S+  L +     NS
Sbjct: 339 --LERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM-----NS 386

Query: 685 LSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCF 744
               +PE   N   L  L+++ N    + P        S+  L + S      +      
Sbjct: 387 HLAEVPELPQN---LKQLHVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHET 438

Query: 745 LTSLQILDLGYNNLS 759
              L+     +++  
Sbjct: 439 TDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (338), Expect = 2e-33
 Identities = 95/524 (18%), Positives = 170/524 (32%), Gaps = 109/524 (20%)

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
           F  P  V+ + +      S+      + +     + +        ++++ + P G     
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNL--TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQR 58

Query: 308 SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQ 367
            +    L                     + L +  L  S+     +L    E L  S   
Sbjct: 59  EMAVSRLRDCLDR-----------QAHELELNNLGLS-SLPELPPHL----ESLVASCNS 102

Query: 368 LEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS 427
           L  ++P     L +L   + +   +S             +   LE   ++  ++   L  
Sbjct: 103 LT-ELPELPQSLKSLLVDNNNLKALSD------------LPPLLEYLGVSNNQL-EKLPE 148

Query: 428 QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSF 487
            + +   L  + + +NS+  L P     L  +      NN L+  L E+   NL  L + 
Sbjct: 149 -LQNSSFLKIIDVDNNSLKKL-PDLPPSLEFIA---AGNNQLE-ELPEL--QNLPFLTAI 200

Query: 488 DVSGNALTLKVGPDWIP--PFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT 545
               N+L        +P  P  LE +   +  L             L  L          
Sbjct: 201 YADNNSLK------KLPDLPLSLESIVAGNNILE--------ELPELQNL---------- 236

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESID 605
                    P L  +   N+ +   +P+L     L  +++  N L+  LP +   L  +D
Sbjct: 237 ---------PFLTTIYADNNLLK-TLPDL--PPSLEALNVRDNYLT-DLPELPQSLTFLD 283

Query: 606 LSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNL 665
           +S N FS  +S +  N     L  LN  +N     + D   +   L  LN+ NN     L
Sbjct: 284 VSENIFS-GLSELPPN-----LYYLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-EL 332

Query: 666 PPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMV 725
           P        L  L    N L+  +PE   N   L  L+++ N    + P           
Sbjct: 333 PA---LPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPES------ 378

Query: 726 ILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNL 769
           + +LR N    + P       +L+ L +  N L    P    ++
Sbjct: 379 VEDLRMNSHLAEVPEL---PQNLKQLHVETNPLR-EFPDIPESV 418

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (319), Expect = 6e-31
 Identities = 86/537 (16%), Positives = 161/537 (29%), Gaps = 109/537 (20%)

Query: 174 IPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLS 233
           +P +  N+          +                 +  ++            L      
Sbjct: 26  MPVEAENVKSKTEYYNAWS------EWERNAPPGNGEQREMAVSR--------LRDCLDR 71

Query: 234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSN 293
               L L+   L             +  L  S N     + +      L +L+  +    
Sbjct: 72  QAHELELNNLGLSSLPE----LPPHLESLVASCNSL---TELPELPQSLKSLLVDNNNLK 124

Query: 294 DFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353
                 P        L +L +S N     +P  L + S L  I + +NSL+  +     +
Sbjct: 125 ALSDLPP-------LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 354 LSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLES 413
           L    E +   + QLE ++P     L  L  I   +                        
Sbjct: 175 L----EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNS---------------------- 206

Query: 414 WDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYL 473
                      L        SL+S+   +N +       L  L  L  +   NN LK   
Sbjct: 207 -----------LKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLP 253

Query: 474 SEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLG 533
                     L + +V  N LT    P+      L  LD+              +   L 
Sbjct: 254 DLP-----PSLEALNVRDNYLT--DLPELPQ--SLTFLDVSENIF-SGLSELPPN---LY 300

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT 593
           YL+ S + I+ ++        P L  LN SN+++  E+P L     L  +  S N+L+  
Sbjct: 301 YLNASSNEIR-SLCDLP----PSLEELNVSNNKLI-ELPALP--PRLERLIASFNHLA-E 351

Query: 594 LPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV 653
           +P +   L+ + +  N        +  +     ++ L + ++    E+P+   N   L+ 
Sbjct: 352 VPELPQNLKQLHVEYNPLR-EFPDIPES-----VEDLRMNSH--LAEVPELPQN---LKQ 400

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
           L++  N      P       S+  L +    +      +    ++L     + +   
Sbjct: 401 LHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (290), Expect = 3e-27
 Identities = 88/514 (17%), Positives = 170/514 (33%), Gaps = 115/514 (22%)

Query: 424 HLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSK 483
            +  +  + KS    + + +      P   G    +    L +   +            +
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR------------Q 72

Query: 484 LVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQ 543
               +++   L+    P+  P   LE L      L    P    S   L   + +     
Sbjct: 73  AHELELNNLGLS--SLPELPP--HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK--- 124

Query: 544 DTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLES 603
                   +  P L +L  SN+++  ++P L  ++ L+ +D+ +N+L   LP +   LE 
Sbjct: 125 -----ALSDLPPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF 177

Query: 604 IDLSNNAFSGSISPV--LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNF 661
           I   NN     +  +  L       L  +  +NNS   ++PD  ++   L  +  GNN  
Sbjct: 178 IAAGNNQLE-ELPELQNLPF-----LTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL 227

Query: 662 TGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
                P L +L  LT ++   N L   +P+   +   L +LN+  N  + D+P       
Sbjct: 228 E--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQ--- 277

Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
            S+  L++  NIF            +L  L+   N +  ++     +L            
Sbjct: 278 -SLTFLDVSENIFS-GLSE---LPPNLYYLNASSNEIR-SLCDLPPSL------------ 319

Query: 782 THPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEI 841
               +++  L    LP                       +    L  L   S N+ + E+
Sbjct: 320 EELNVSNNKL--IELP-----------------------ALPPRLERL-IASFNHLA-EV 352

Query: 842 PVEVTDLVALRSLNLSYNHFSGRIPDSIGAMK----------------SIEVIDFSNNQL 885
           P        L+ L++ YN      PD   +++                +++ +    N L
Sbjct: 353 PEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 886 SEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQL 919
            E  P    ++  L + +            +T  
Sbjct: 409 RE-FPDIPESVEDLRMNSERVVDPYEFAHETTDK 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 7e-25
 Identities = 77/434 (17%), Positives = 144/434 (33%), Gaps = 85/434 (19%)

Query: 134 QHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
           +  + L+L+      G+         L+ L  S       +P    +L  L   +    +
Sbjct: 71  RQAHELELNNL----GLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 194 ---------ELYVDN--LSWLP---GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLR 239
                     L V N  L  LP     S L+ +D+   +L K  D         SL  + 
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIA 179

Query: 240 LSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGS 298
               QL+    P + N+  ++ +   +N        L  +     +L  +  G+N     
Sbjct: 180 AGNNQLEEL--PELQNLPFLTAIYADNNS-------LKKLPDLPLSLESIVAGNNIL--E 228

Query: 299 IPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASI 358
               LQNL  L  +    N    ++P+      +L  +++R N L   +     +L+  +
Sbjct: 229 ELPELQNLPFLTTIYADNNLL-KTLPDLP---PSLEALNVRDNYLT-DLPELPQSLT-FL 282

Query: 359 EVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTG 418
           +V +     L    P       NL  ++ S  +    I  + D+  S     LE  +++ 
Sbjct: 283 DVSENIFSGLSELPP-------NLYYLNASSNE----IRSLCDLPPS-----LEELNVSN 326

Query: 419 CKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK------GY 472
            K+   L +       L+ L  S N ++ + P     L  L    +  N L+        
Sbjct: 327 NKL-IELPALPP---RLERLIASFNHLAEV-PELPQNLKQLH---VEYNPLREFPDIPES 378

Query: 473 LSEIHLAN--------LSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPF 524
           + ++ + +           L    V  N L     PD      +E L + S  +   + F
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLR--EFPDIP--ESVEDLRMNSERVVDPYEF 434

Query: 525 WLLSQNVLGYLDIS 538
              + + L      
Sbjct: 435 AHETTDKLEDDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 1e-23
 Identities = 76/490 (15%), Positives = 141/490 (28%), Gaps = 119/490 (24%)

Query: 433 KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
             L       ++++ + P     + S      + +  +            ++    +   
Sbjct: 11  TFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDC 68

Query: 493 ALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE 552
                         Q  +L+L +  L  + P        L  L  S + +   +P     
Sbjct: 69  LDR-----------QAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQS 112

Query: 553 ASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF--QLESIDLSNNA 610
               L   N +   ++   P L        + +S+N L   LP +     L+ ID+ NN+
Sbjct: 113 LK-SLLVDNNNLKALSDLPPLL------EYLGVSNNQLE-KLPELQNSSFLKIIDVDNNS 164

Query: 611 FSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLG 670
               +  +  +     L+ +   NN    E+P+   N  +L  +   NN+    LP    
Sbjct: 165 LK-KLPDLPPS-----LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPL 215

Query: 671 SLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR 730
           SL     +    N L       L N   L ++  D N     +P                
Sbjct: 216 SL---ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPP------------ 257

Query: 731 SNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCS 790
                           SL+ L++  N L+  +P+   +L+               +    
Sbjct: 258 ----------------SLEALNVRDNYLT-DLPELPQSLTF--------------LDVSE 286

Query: 791 LYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVA 850
              S L                             L  L + S N     +        +
Sbjct: 287 NIFSGLS-----------------------ELPPNLYYL-NASSNEIR-SLC---DLPPS 318

Query: 851 LRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
           L  LN+S N     +P        +E +  S N L+E +P    NL  L++         
Sbjct: 319 LEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFP 373

Query: 911 GEIPTSTQLQ 920
               +   L+
Sbjct: 374 DIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 58/351 (16%), Positives = 119/351 (33%), Gaps = 58/351 (16%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
           P L +   L  +D+  NS    + +       L+++       +     +L NL  L  +
Sbjct: 147 PELQNSSFLKIIDVDNNS----LKKLPDLPPSLEFIAAGNNQLE--ELPELQNLPFLTAI 200

Query: 188 DLVENSELYVDNLSWLPG-LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLD 246
               N      +L  LP     L+ +  G  N+ +       + +L  L  +      L 
Sbjct: 201 YADNN------SLKKLPDLPLSLESIVAGN-NILEELP---ELQNLPFLTTIYADNNLLK 250

Query: 247 HFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNL 306
              P    ++ +++V D       +            +L +LD+  N F   +    +  
Sbjct: 251 TL-PDLPPSLEALNVRDNYLTDLPEL---------PQSLTFLDVSENIFS-GLS---ELP 296

Query: 307 TSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQ 366
            +L +L+ S N+  S          +L  +++ +N L   +      L    E L  S  
Sbjct: 297 PNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLI-ELPALPPRL----ERLIASFN 347

Query: 367 QLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLT 426
            L  ++P       NL+++ +        + E  DI  S    R+ S      ++  +L 
Sbjct: 348 HLA-EVPEL---PQNLKQLHVEYNP----LREFPDIPESVEDLRMNSHLAEVPELPQNLK 399

Query: 427 S------QIGHF----KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
                   +  F    +S++ L ++   +      +      LE  V  ++
Sbjct: 400 QLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 76/399 (19%), Positives = 138/399 (34%), Gaps = 86/399 (21%)

Query: 555 PQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGS 614
            +    + + + +  E  N+           + +      P  + +   + +S       
Sbjct: 14  QEPLRHSSNLTEMPVEAENVKS---KTEYYNAWSEWERNAPPGNGEQREMAVSR------ 64

Query: 615 ISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGS 674
               L + +  +   L L N   S  +P+   +   L  L    N+ T  LP    SL S
Sbjct: 65  ----LRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKS 115

Query: 675 LTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIF 734
           L + +    +LS   P        L  L +  NQ    +P  +    S + I+++ +N  
Sbjct: 116 LLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPE-LQ-NSSFLKIIDVDNNSL 165

Query: 735 DGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRS 794
             + P       SL+ +  G N L   +P+ + NL  +  +            + SL   
Sbjct: 166 K-KLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIY---------ADNNSL--K 208

Query: 795 CLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSL 854
            LP                          L L ++     N    E+P E+ +L  L ++
Sbjct: 209 KLP-----------------------DLPLSLESI-VAGNNILE-ELP-ELQNLPFLTTI 242

Query: 855 NLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIP 914
               N     +PD      S+E ++  +N L++ +P    +LTFL++    ++ LS   P
Sbjct: 243 YADNNLLK-TLPDLPP---SLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPP 297

Query: 915 TSTQLQSFDASCFIGNDLCGSP-------LSRNCTETVP 946
               L   +AS      LC  P       +S N    +P
Sbjct: 298 ---NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.0 bits (185), Expect = 4e-14
 Identities = 55/262 (20%), Positives = 93/262 (35%), Gaps = 42/262 (16%)

Query: 665 LPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSM 724
           + P   S   L       ++L+  +P    N           +++  + P   GE+   M
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REM 60

Query: 725 VILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHP 784
            +  LR            C       L+L    LS ++P+   +L ++V     L +   
Sbjct: 61  AVSRLRD-----------CLDRQAHELELNNLGLS-SLPELPPHLESLVASCNSLTELPE 108

Query: 785 GITDC-SLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPV 843
                 SL        ++ SD             LEY         + +S N    ++P 
Sbjct: 109 LPQSLKSLLVDNN-NLKALSDLPPL---------LEY---------LGVSNNQLE-KLP- 147

Query: 844 EVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLN 903
           E+ +   L+ +++  N    ++PD      S+E I   NNQL EE+P  + NL FL  + 
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQL-EELP-ELQNLPFLTAIY 201

Query: 904 LSYNYLSGEIPTSTQLQSFDAS 925
              N L         L+S  A 
Sbjct: 202 ADNNSLKKLPDLPLSLESIVAG 223

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (340), Expect = 1e-33
 Identities = 67/485 (13%), Positives = 149/485 (30%), Gaps = 53/485 (10%)

Query: 131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLV 190
            +        ++ +S    +     S   +K L+LSG     +    L   +KL+ L+L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 191 ENS--------------ELYVDN--LSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSS 234
            N                L ++N  +  L     ++ L     N+       ++ +    
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-----RVSCSRGQG 121

Query: 235 LRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSN 293
            + + L+  ++           S +  LDL  N+   +++  + +      L +L+L  N
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYN 179

Query: 294 DFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353
                +   +     L+ LDLS N   + +     S + +  ISLR+N L   I   L  
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 354 LSASIEVLDLSSQQLE-GQIPRSFGRLCNLREISLSDVKMSQDISEI------------- 399
              ++E  DL       G +   F +   ++ ++   VK     +E              
Sbjct: 236 SQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 400 -LDIFSSCISDRLESWDMTGCKI-------FGHLTSQIGHFKSLDSLFLSHNSISGLIPS 451
             +   +  +DRL +       +          L  +  +      +         +I  
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 452 SLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKL 511
                 +   +      L   +S    A+     +   +   + L+   +   P QL + 
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

Query: 512 DLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEI 571
            ++  +         +  N +   D+ +      +              + + +  N  +
Sbjct: 415 IVKR-YEEMYVEQQSVQNNAIRDWDMYQHKETQ-LAEENARLKKLNGEADLALASANATL 472

Query: 572 PNLSK 576
             L  
Sbjct: 473 QELVV 477

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (317), Expect = 1e-30
 Identities = 67/493 (13%), Positives = 141/493 (28%), Gaps = 106/493 (21%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
            +      +  +  + ++    Q+  +++ LDLS N  +      LA F+ L  ++L SN
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
            L  ++   L +LS ++  LDL++  ++           ++  +  ++      IS +  
Sbjct: 69  VLYETLD--LESLS-TLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN----ISRV-- 114

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLER 461
                                          +   +++L++N I+ L     G  S ++ 
Sbjct: 115 --------------------------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 462 VVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPT 521
           + L  N +         A+   L   ++  N +        +   +L+ LDL S  L   
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKL--- 203

Query: 522 FPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLR 581
                                                      + +  E  + +    + 
Sbjct: 204 -------------------------------------------AFMGPEFQSAAG---VT 217

Query: 582 TVDLSSNNLSGTLPLISFQ---LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638
            + L +N L   +         LE  DL  N F         +      +V  +   +  
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN---QRVQTVAKQTVK 273

Query: 639 GEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSG----RIPESLS 694
                         + + G         P    L +L        S  G    R+     
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 695 NCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQ---IL 751
           N  R   ++    Q+   +   +  +  + + L  +    D Q          L      
Sbjct: 334 NQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 752 DLGYNNLSGAIPK 764
            +G   L  A  +
Sbjct: 393 AVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (311), Expect = 8e-30
 Identities = 62/492 (12%), Positives = 141/492 (28%), Gaps = 74/492 (15%)

Query: 149 GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSL 208
            I     +  + K   ++ +  K  +     +   ++ LDL  N       LS +     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN------PLSQIS---- 50

Query: 209 LQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ 268
                            +  +   + L +L LS   L       + ++S++  LDL++N 
Sbjct: 51  -----------------AADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNY 91

Query: 269 FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLA 328
                  +  +    ++  L   +N+    +          +++ L+ N           
Sbjct: 92  -------VQELLVGPSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEG 141

Query: 329 SFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLS 388
             S + ++ L+ N +       LA  S ++E L+L    +   +         L+ + LS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLS 199

Query: 389 DVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL 448
             K++                               +  +      +  + L +N +   
Sbjct: 200 SNKLA------------------------------FMGPEFQSAAGVTWISLRNNKLVL- 228

Query: 449 IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA-LTLKVGPDWIPPFQ 507
           I  +L    +LE   L  N           +   ++ +        LT +   +   P  
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 508 LEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRI 567
                     L   F   L++     +  +S  G +        E   +   ++    + 
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 568 NGEIPNL-SKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGE 626
              I  +  +     T++     L   +         +D +     G I        +  
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408

Query: 627 LQVLNLENNSFS 638
           LQ+L      + 
Sbjct: 409 LQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (310), Expect = 1e-29
 Identities = 76/508 (14%), Positives = 155/508 (30%), Gaps = 101/508 (19%)

Query: 425 LTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKL 484
           +     +        ++ +S+   + S      +++ + LS N L   +S   LA  +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFT-- 58

Query: 485 VSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQD 544
                                 +LE L+L S  L  T     LS   L  LD++ + +Q+
Sbjct: 59  ----------------------KLELLNLSSNVLYETLDLESLST--LRTLDLNNNYVQE 94

Query: 545 TVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF----Q 600
                     P +  L+ +N+ I+  +   S+  G + + L++N ++  L  +      +
Sbjct: 95  ------LLVGPSIETLHAANNNIS-RVS-CSRGQGKKNIYLANNKIT-MLRDLDEGCRSR 145

Query: 601 LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNN 660
           ++ +DL  N    +++          L+ LNL+ N    ++    + F  L+ L+L +N 
Sbjct: 146 VQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNK 202

Query: 661 FTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEK 720
               + P   S   +T + L+ N L   I ++L     L   ++ GN F          K
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 721 FSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLG 780
                +  +                T   +   G                          
Sbjct: 261 NQR--VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC---------------------- 296

Query: 781 DTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGE 840
                                   P     + +K KE          AL+    +     
Sbjct: 297 -------------------EDLPAPFADRLIALKRKEH---------ALLSGQGSETE-R 327

Query: 841 IPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP---RSVSNLT 897
           +  E  +    R ++     +   I       ++   ++     L E++    R+ + L 
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

Query: 898 FLNLLNLSYNYLSGEIPTSTQLQSFDAS 925
                 +    L       + LQ   A 
Sbjct: 388 GTLQQAVGQIELQHATEEQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 56/298 (18%)

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
           I +   N    ++  + +++    L     S  ++  L L  N LS      L+   +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
            LN+  N    +      E  S++  L+L +N        EL    S++ L    NN+S 
Sbjct: 62  LLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEY 820
            +                      G  +  L  + +                     L  
Sbjct: 113 RVSC----------------SRGQGKKNIYLANNKI-------------------TMLRD 137

Query: 821 STILYLVAL--IDLSKNNFSG-EIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEV 877
                   +  +DL  N                L  LNL YN     +   +     ++ 
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKT 195

Query: 878 IDFSNNQLSEEIPRSVSNLTFLNLLNLSYN---YLSGEIPTSTQLQSFDASCFIGNDL 932
           +D S+N+L+  +     +   +  ++L  N    +   +  S  L+ FD     GN  
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 33/271 (12%), Positives = 73/271 (26%), Gaps = 7/271 (2%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQL-GNLSK 183
            + P       + ++ L  N     I + L     L++ +L G GF             +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 184 LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           +Q +      +L   N       +L  +      +L   F   L         +L   G 
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL 303
           + +        N +    +D    Q+      ++        + L+         +  G 
Sbjct: 324 ETERL-ECERENQARQREIDALKEQYRTVIDQVTL--RKQAKITLEQKKKALDEQVSNGR 380

Query: 304 QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDL 363
           +    L             + +     S L  +       +       +  + +I   D+
Sbjct: 381 RAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDM 439

Query: 364 SSQQLEGQIPRSFGRLCNLREISLSDVKMSQ 394
              +   Q+     RL  L   +   +  + 
Sbjct: 440 YQHKET-QLAEENARLKKLNGEADLALASAN 469

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (321), Expect = 3e-32
 Identities = 54/323 (16%), Positives = 96/323 (29%), Gaps = 34/323 (10%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL 219
            + L   G+         L    +    D                  +  Q     G  L
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA-----WRQANSNNPQIETRTGRAL 68

Query: 220 GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWV 279
               D  L   +      L L    L  F P     +S +  + + +    +   +   +
Sbjct: 69  KATAD-LLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLME---LPDTM 123

Query: 280 FGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFS-------- 331
              + L  L L  N  + ++P  + +L  LR L +      + +P  LAS          
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 332 -NLVHISLRSNSLQG---SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISL 387
            NL  + L    ++    SI   L NL    + L + +  L   +  +   L  L E+ L
Sbjct: 183 VNLQSLRLEWTGIRSLPASI-ANLQNL----KSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 388 SDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISG 447
                   +     IF       L+   +  C     L   I     L+ L L       
Sbjct: 237 RG---CTALRNYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 448 LIPSSLGGLSSLERVVLSNNTLK 470
            +PS +  L +   +++  +   
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (315), Expect = 2e-31
 Identities = 56/354 (15%), Positives = 111/354 (31%), Gaps = 59/354 (16%)

Query: 560 LNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPV 618
           L F  S       + LS+       D +  + +      +   +    +  A   + + +
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETRTGRALK-ATADL 74

Query: 619 LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLL 678
           L +  +     L L +     + PD      +L+ + +        LP ++     L  L
Sbjct: 75  LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132

Query: 679 HLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQF 738
            L +N L   +P S+++ NRL  L++       ++P  +                     
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST----------------DA 175

Query: 739 PTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPR 798
             E   L +LQ L L +  +  ++P  I+NL  + ++          I +  L  S L  
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK---------IRNSPL--SALG- 222

Query: 799 PRSFSDPIEKAFLVMKGKELEYSTILYLVALI--DLSKNNFSGEIPVEVTDLVALRSLNL 856
                                   I +L  L   DL         P        L+ L L
Sbjct: 223 ----------------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 857 SYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
                   +P  I  +  +E +D         +P  ++ L    ++ +  +  +
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 2e-26
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 39/344 (11%)

Query: 429 IGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFD 488
             H    ++L+   ++        L           ++            AN +      
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHY---NADRNRWHSAWR--QANSNNPQIET 62

Query: 489 VSGNALTLKVGPDWIPPFQ---LEKLDLQSCHLGPTFP--FWLLSQNVLGYLDISRSGIQ 543
            +G AL      D +          L+L+S  L P FP   + LS   L ++ I  +G+ 
Sbjct: 63  RTGRALKAT--ADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSH--LQHMTIDAAGLM 117

Query: 544 DTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLE 602
             +P    + +  L  L  + + +   +P  ++    LR + + +      LP      E
Sbjct: 118 -ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP------E 168

Query: 603 SIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT 662
            +         S      +     LQ L LE       +P    N   L+ L + N+  +
Sbjct: 169 PL--------ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

Query: 663 GNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM-DGNQFSGDIPTWIGEKF 721
             L P++  L  L  L L+  +     P        L  L + D +     +P  I  + 
Sbjct: 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIH-RL 276

Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKC 765
           + +  L+LR  +   + P+ +  L +  I+ +   +L   + + 
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 9e-26
 Identities = 41/344 (11%), Positives = 87/344 (25%), Gaps = 62/344 (18%)

Query: 577 ATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636
           ++G   +    +        +  Q +    ++     S      N      Q+      +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW-RQAN--SNNPQIETRTGRA 67

Query: 637 FSGEIPDCW--MNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLS 694
                 D            L L +       P     L  L  + +    L   +P+++ 
Sbjct: 68  LK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 695 NCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLG 754
               L +L +  N                               P  +  L  L+ L + 
Sbjct: 125 QFAGLETLTLARNPLR--------------------------ALPASIASLNRLRELSIR 158

Query: 755 YNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMK 814
                  +P+ +++  A       +      +    +    LP                 
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLP----------------- 199

Query: 815 GKELEYSTILYLVALI--DLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAM 872
                 ++I  L  L    +  +  S  +   +  L  L  L+L         P   G  
Sbjct: 200 ------ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 873 KSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS 916
             ++ +   +      +P  +  LT L  L+L        +P+ 
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 6e-24
 Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 24/228 (10%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
                  HL ++ +        +P  +     L+ L L+    +  +P  + +L++L+ L
Sbjct: 98  DQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLREL 155

Query: 188 DLVENSEL--------YVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSL--AINSLSSLRV 237
            +    EL          D      GL  LQ L L    +      SL  +I +L +L+ 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-----RSLPASIANLQNLKS 210

Query: 238 LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVL--SWVFGLSNLVYLDLGSNDF 295
           L++    L     P I ++  +  LDL        +L        G + L  L L     
Sbjct: 211 LKIRNSPLSAL-GPAIHHLPKLEELDLRGC----TALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 296 QGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSL 343
             ++P+ +  LT L  LDL      S +P+ +A       I +  +  
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 9e-23
 Identities = 55/422 (13%), Positives = 107/422 (25%), Gaps = 109/422 (25%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
            S    L    +         L       + D +         N     +N    +    
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGR 66

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
           +L+ +              L+L S  L  Q P    RL +L+ +++              
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID------------- 112

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLER 461
                              +   L   +  F  L++L L+ N +  L P+S+  L+ L  
Sbjct: 113 ----------------AAGL-MELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE 154

Query: 462 VVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPT 521
           + +                  +L        +         +    L+ L L+   +   
Sbjct: 155 LSIRAC--------------PELTELPEPLASTDASGEHQGLV--NLQSLRLEWTGI--- 195

Query: 522 FPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLR 581
                                  ++PA        L  L   NS ++   P +     L 
Sbjct: 196 ----------------------RSLPASIANLQ-NLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 582 TVDLSSNNLSGTLPLISFQLESI-DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
            +DL         P            +                   L+ L L++ S    
Sbjct: 233 ELDLRGCTALRNYP------PIFGGRAP------------------LKRLILKDCSNLLT 268

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
           +P        L  L+L        LP  +  L +  ++ +  +  +          +R V
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ------HRPV 322

Query: 701 SL 702
           + 
Sbjct: 323 AR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.5 bits (202), Expect = 1e-16
 Identities = 46/298 (15%), Positives = 88/298 (29%), Gaps = 73/298 (24%)

Query: 663 GNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI--------- 713
           G+             L+ Q ++      + LS   R  + + +    +            
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 714 ----------PTWIGE-KFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAI 762
                        + +      V L LRS     QFP +   L+ LQ + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 763 PKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYST 822
           P  +   + + T+          +    L    LP                       ++
Sbjct: 120 PDTMQQFAGLETLT---------LARNPL--RALP-----------------------AS 145

Query: 823 ILYLVAL--IDLSKNNFSGEIP---------VEVTDLVALRSLNLSYNHFSGRIPDSIGA 871
           I  L  L  + +       E+P          E   LV L+SL L +      +P SI  
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 872 MKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS----TQLQSFDAS 925
           +++++ +   N+ L   +  ++ +L  L  L+L         P        L+     
Sbjct: 205 LQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 26/195 (13%)

Query: 745 LTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSD 804
            +  + L    +         +S        D     +     + +  +      R+   
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 805 PIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR 864
             +          LE +T    VAL +L       + P +   L  L+ + +        
Sbjct: 71  TAD---------LLEDATQPGRVAL-ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 865 IPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS-------- 916
           +PD++     +E +  + N L   +P S+++L  L  L++       E+P          
Sbjct: 119 LPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 917 -----TQLQSFDASC 926
                  LQS     
Sbjct: 178 EHQGLVNLQSLRLEW 192

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKL 184
             +       +L  L L        +P  + ++  LK L +  +     +   + +L KL
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 185 QYLDLVENSELYVDNLSWLP----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRL 240
           + LDL   +      L   P    G + L+ L L   +          I+ L+ L  L L
Sbjct: 232 EELDLRGCTA-----LRNYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDL 284

Query: 241 SGC-QLDHFHPPPIVNISSISVLDLSSNQFDQ 271
            GC  L    P  I  + +  ++ +  +   Q
Sbjct: 285 RGCVNLSRL-PSLIAQLPANCIILVPPHLQAQ 315

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  125 bits (316), Expect = 2e-30
 Identities = 103/535 (19%), Positives = 182/535 (34%), Gaps = 84/535 (15%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
               +L +S   +       I+++S + +L +S N+      +   VF     L YLDL 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI---QYLDISVFKFNQELEYLDLS 77

Query: 292 SNDFQGSIPVGLQNLTSLRHLDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGF 350
            N     I        +L+HLDLS+N F++  I     + S L  + L +  L+ S    
Sbjct: 78  HNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 351 LANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDR 410
           +A+L+ S  +L L     E         L +    SL  V  +      +   S      
Sbjct: 135 IAHLNISKVLLVLGETYGE---KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK 470
           LE  ++         +  +     L +     N     I ++      + ++V       
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 471 GYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQN 530
             +S + L        FD SG +L             + ++         ++ + + S  
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKA---------LSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 531 VLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSNN 589
            +    +S + +   V             L+FSN+ +   +  N    T L T+ L  N 
Sbjct: 303 NIKNFTVSGTRM---VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 590 LSGTLPLISF------QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPD 643
           L   L  I+        L+ +D+S N+ S       C+  +  L  LN+ +N  +  I  
Sbjct: 360 LK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK-SLLSLNMSSNILTDTIFR 417

Query: 644 CWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLN 703
           C      ++VL+L +N    ++P  +  L +L  L++  N L   +P+            
Sbjct: 418 C--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG----------- 462

Query: 704 MDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNL 758
                                        IFD         LTSLQ + L  N  
Sbjct: 463 -----------------------------IFDR--------LTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  120 bits (302), Expect = 1e-28
 Identities = 103/585 (17%), Positives = 196/585 (33%), Gaps = 119/585 (20%)

Query: 137 NYLDLSGNSFG---GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
             +D S N        + +      K   LN+S      +    + +LSKL+ L +  N 
Sbjct: 3   FLVDRSKNGLIHVPKDLSQ------KTTILNISQNYISELWTSDILSLSKLRILIISHNR 56

Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPI 253
                          +Q+LD+        F           L  L LS  +L        
Sbjct: 57  ---------------IQYLDIS------VFK------FNQELEYLDLSHNKLVKI---SC 86

Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHL 312
               ++  LDLS N FD  +L +   FG +S L +L L +   + S  + + +L   + L
Sbjct: 87  HPTVNLKHLDLSFNAFD--ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 313 DLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQI 372
            +                 +    SL           F+ ++S                 
Sbjct: 145 LVLGE--TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK--------------- 187

Query: 373 PRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHF 432
                    +  + LS++K   + ++     S                +    T+     
Sbjct: 188 --------TVANLELSNIKCVLEDNKCSYFLSI---------------LAKLQTNPKLSN 224

Query: 433 KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
            +L+++  + NS   ++   L   +++    +SN  L+G L             FD SG 
Sbjct: 225 LTLNNIETTWNSFIRIL--QLVWHTTVWYFSISNVKLQGQL---------DFRDFDYSGT 273

Query: 493 ALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE 552
           +L             + ++         ++ + + S   +    +S + +   V      
Sbjct: 274 SLKA---------LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM---VHMLCPS 321

Query: 553 ASPQLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSNNLSGTLPLISF------QLESID 605
                  L+FSN+ +   +  N    T L T+ L  N L   L  I+        L+ +D
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD 380

Query: 606 LSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNL 665
           +S N+ S       C+  +  L  LN+ +N  +  I  C      ++VL+L +N    ++
Sbjct: 381 ISQNSVSYDEKKGDCSWTK-SLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SI 436

Query: 666 PPSLGSLGSLTLLHLQKNSLSGRIPE-SLSNCNRLVSLNMDGNQF 709
           P  +  L +L  L++  N L   +P+        L  + +  N +
Sbjct: 437 PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (270), Expect = 1e-24
 Identities = 92/443 (20%), Positives = 154/443 (34%), Gaps = 39/443 (8%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
            +LS    +L++S   +          L  LR + +S  ++ Q +     +F       L
Sbjct: 17  KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDI--SVFKFNQE--L 71

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL-IPSSLGGLSSLERVVLSNNTLK 470
           E  D++  K+   ++       +L  L LS N+   L I    G +S L+ + LS   L+
Sbjct: 72  EYLDLSHNKL-VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 471 GYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGP---TFPFWLL 527
              S + +A+L+      V G     K  P+ +  F  E L +               + 
Sbjct: 129 K-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 528 SQNVLGYLDISRSGIQDTVPARFWEAS-----PQLYFLNFSNSRINGE----IPNLSKAT 578
           +   L   +I      +         +     P+L  L  +N          I  L   T
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 579 GLRTVDLSSNNLSGTLPLISF--------QLESIDLSNNAFSGSISPVLCNGMRGELQVL 630
            +    +S+  L G L    F         L    + ++ F    S +        + + 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF--SNMNIK 305

Query: 631 NLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS--GR 688
           N   +        C         L+  NN  T  +  + G L  L  L LQ N L    +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 689 IPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIF-DGQFPTELCFLTS 747
           I E  +    L  L++  N  S D          S++ LN+ SNI  D  F    C    
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR---CLPPR 422

Query: 748 LQILDLGYNNLSGAIPKCISNLS 770
           +++LDL  N +  +IPK +  L 
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLE 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (267), Expect = 4e-24
 Identities = 90/484 (18%), Positives = 186/484 (38%), Gaps = 35/484 (7%)

Query: 135 HLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSE 194
               L++S N         + S+ KL+ L +S    + +         +L+YLDL  N  
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-- 79

Query: 195 LYVDNLSWLP--GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP 252
                L  +       L+HLDL   N   A        ++S L+ L LS   L+     P
Sbjct: 80  ----KLVKISCHPTVNLKHLDLSF-NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 253 IVNISSISV-LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
           I +++   V L L     ++        F   +L  +   + +F   + V ++ + +L  
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 312 LDLSYN------DFNSSIPNWLASFSNLVHISLRSNSLQG-SITGFLANLSAS-IEVLDL 363
            ++          +  SI   L +   L +++L +      S    L  +  + +    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 364 SSQQLEGQIPRSFGRL--CNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKI 421
           S+ +L+GQ+          +L+ +S+  V           I+    +  ++++ ++G ++
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 422 FGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHL-AN 480
              L            L  S+N ++  +  + G L+ LE ++L  N LK       +   
Sbjct: 315 VHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 481 LSKLVSFDVSGNALTLKVGPD-WIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISR 539
           +  L   D+S N+++             L  L++ S  L     F  L    +  LD+  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-TDTIFRCLPPR-IKVLDLHS 430

Query: 540 SGIQDTVPARFWEASPQLYFLNFSNSRI----NGEIPNLSKATGLRTVDLSSNNLSGTLP 595
           + I+ ++P +  +    L  LN +++++    +G    L+    L+ + L +N    + P
Sbjct: 431 NKIK-SIPKQVVKL-EALQELNVASNQLKSVPDGIFDRLTS---LQKIWLHTNPWDCSCP 485

Query: 596 LISF 599
            I +
Sbjct: 486 RIDY 489

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =   99 bits (249), Expect = 6e-22
 Identities = 86/493 (17%), Positives = 167/493 (33%), Gaps = 61/493 (12%)

Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
           +D   N     +P  L        L++S N  +    + + S S L  + +  N +Q   
Sbjct: 5   VDRSKNGLI-HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 348 TGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCI 407
                     +E LDLS  +L   I        NL+ + LS                   
Sbjct: 62  ISVFKFNQ-ELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFD-------------- 103

Query: 408 SDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
                   +  CK FG+++        L  L LS   +       +  L+  + +++   
Sbjct: 104 -------ALPICKEFGNMSQ-------LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 468 TL-----KGYLSEIHLANLSKLVSFDVSGNAL---TLKVGPDWIPPFQLEKLDLQSCHLG 519
           T         L + +  +L  +   +   + +   ++K   +         L+   C   
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 520 PTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE--ASPQLYFLNFSNSRINGEIP----- 572
            +    L +   L  L ++          R  +      +++ + SN ++ G++      
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 573 -NLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGS-ISPVLCNGMRGELQVL 630
            + +    L    + S+        I     ++++ N   SG+ +  +LC         L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 631 NLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLG---SLGSLTLLHLQKNSLSG 687
           +  NN  +  + +   +   L  L L  N     L         + SL  L + +NS+S 
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 688 RIPESL-SNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLT 746
              +   S    L+SLNM  N  +  I   +      + +L+L SN      P ++  L 
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLE 444

Query: 747 SLQILDLGYNNLS 759
           +LQ L++  N L 
Sbjct: 445 ALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.5 bits (235), Expect = 3e-20
 Identities = 90/500 (18%), Positives = 164/500 (32%), Gaps = 85/500 (17%)

Query: 433 KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
           +    L +S N IS L  S +  LS L  +++S+N     +  + ++             
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHN----RIQYLDISVFKFNQ------- 69

Query: 493 ALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE 552
                         +LE LDL    L             L +LD+S +        + + 
Sbjct: 70  --------------ELEYLDLSHNKLV-KISCHPTVN--LKHLDLSFNAFDALPICKEFG 112

Query: 553 ASPQLYFLNFSNSRI-NGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQ-LESIDLSNNA 610
              QL FL  S + +    +  ++     + + +              Q   +  L    
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 611 FSGSISPVLCNGMRGELQVLNLENNSFSGEIPDC---------WMNFLYLRVLNLGNNNF 661
            +      + +     +  L L N     E   C               L  L L N   
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 662 TGNLPPSLGSL---GSLTLLHLQKNSLSGRIPESLSNCN-----RLVSLNMDGNQFSGDI 713
           T N    +  L    ++    +    L G++     + +      L    +  + F    
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP- 291

Query: 714 PTWIGEKFSSMVILNLRSNIFDGQFPTELCF--LTSLQILDLGYNNLSGAIPKCISNLSA 771
            ++I E FS+M I N   +    +    LC   ++    LD   N L+  + +   +L+ 
Sbjct: 292 QSYIYEIFSNMNIKNFTVS--GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 772 MVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALID 831
           + T+               L  + L         I +    MK   L+          +D
Sbjct: 350 LETLI--------------LQMNQL----KELSKIAEMTTQMK--SLQQ---------LD 380

Query: 832 LSKNNFSGEIPVEVTD-LVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP 890
           +S+N+ S +          +L SLN+S N  +  I   +     I+V+D  +N++   IP
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS-IP 437

Query: 891 RSVSNLTFLNLLNLSYNYLS 910
           + V  L  L  LN++ N L 
Sbjct: 438 KQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 9e-20
 Identities = 84/496 (16%), Positives = 177/496 (35%), Gaps = 74/496 (14%)

Query: 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191
               L  L +S N              +L+YL+LS      +  H       L++LDL  
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSF 99

Query: 192 NSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPP 251
           N+                  L +        F       ++S L+ L LS   L+     
Sbjct: 100 NA---------------FDALPICKE-----FG------NMSQLKFLGLSTTHLEKSSVL 133

Query: 252 PIVNISSISV-LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
           PI +++   V L L     ++        F   +L  +   + +F   + V ++ + +L 
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 311 HLDLSYN------DFNSSIPNWLASFSNLVHISLRSNSLQG-SITGFLANLSAS-IEVLD 362
             ++          +  SI   L +   L +++L +      S    L  +  + +    
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 363 LSSQQLEGQIPRSFGRL--CNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCK 420
           +S+ +L+GQ+          +L+ +S+  V           I+    +  ++++ ++G +
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 421 IFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHL-A 479
           +   L            L  S+N ++  +  + G L+ LE ++L  N LK       +  
Sbjct: 314 MVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 480 NLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISR 539
            +  L   D+S N+++                     +              L  L++S 
Sbjct: 372 QMKSLQQLDISQNSVS---------------------YDEKKGDCSWTKS--LLSLNMSS 408

Query: 540 SGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF 599
           + + DT+        P++  L+  +++I      + K   L+ ++++SN L  ++P   F
Sbjct: 409 NILTDTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIF 464

Query: 600 Q----LESIDLSNNAF 611
                L+ I L  N +
Sbjct: 465 DRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.1 bits (226), Expect = 4e-19
 Identities = 54/345 (15%), Positives = 124/345 (35%), Gaps = 33/345 (9%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
              + + L+ +  +   F   +   + ++  L+  N+          + L  L+KLQ   
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF 248
            + N  L     +W   + +LQ +                    +++    +S  +L   
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLV------------------WHTTVWYFSISNVKLQGQ 262

Query: 249 HPPPIVNIS--SISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQN 305
                 + S  S+  L +     D      S+++   SN+   +   +  +    +    
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ--GSITGFLANLSASIEVLDL 363
           ++   HLD S N    ++       + L  + L+ N L+    I      +  S++ LD+
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDI 381

Query: 364 SSQQLEGQIPR-SFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIF 422
           S   +     +       +L  +++S        + + D    C+  R++  D+   KI 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSS-------NILTDTIFRCLPPRIKVLDLHSNKIK 434

Query: 423 GHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
             +  Q+   ++L  L ++ N +  +       L+SL+++ L  N
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 7e-08
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 21/160 (13%)

Query: 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGM--IPHQLGNLSKLQYLDL 189
                 +LD S N     +    G + +L+ L L     K +  I      +  LQ LD+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAIN------------------- 230
            +NS  Y +          L  L++    L       L                      
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV 441

Query: 231 SLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFD 270
            L +L+ L ++  QL          ++S+  + L +N +D
Sbjct: 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (307), Expect = 6e-30
 Identities = 64/378 (16%), Positives = 125/378 (33%), Gaps = 72/378 (19%)

Query: 127 NPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQY 186
               +   +   +    ++        L S  +++ LNL+    + +  +       +Q 
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97

Query: 187 LDLVENSELYVDNLSWLP-----GLSLLQHLDLGGVNL----GKAFDWSLAINSLSSLRV 237
           L +  N       + +LP      + LL  L L   +L       F      ++   L  
Sbjct: 98  LYMGFN------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF------HNTPKLTT 145

Query: 238 LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
           L +S   L+          +S+  L LSSN+     L       + +L + ++  N    
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLS- 199

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
                L    ++  LD S+N   + +         L  + L+ N+L    T +L N    
Sbjct: 200 ----TLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNLTD--TAWLLNYP-G 249

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           +  +DLS  +LE  +   F ++  L  + +S+ ++                         
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----------------------- 286

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
                  L        +L  L LSHN +   +  +      LE + L +N     +  + 
Sbjct: 287 -------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN----SIVTLK 334

Query: 478 LANLSKLVSFDVSGNALT 495
           L+    L +  +S N   
Sbjct: 335 LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 8e-30
 Identities = 71/415 (17%), Positives = 139/415 (33%), Gaps = 72/415 (17%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
            I   LQ       + +     +        + +N   ++ ++++++      L +    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-Q 70

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           +E+L+L+  Q+E     +F     ++++ +        I  +                  
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPP---------------- 110

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
              +F ++         L  L L  N +S L          L  + +SNN L+  + +  
Sbjct: 111 --HVFQNVP-------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 478 LANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDI 537
               + L +  +S N LT  V    IP   L   ++    L  T          +  LD 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYNLLS-TLA----IPIAVEELDA 212

Query: 538 SRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLI 597
           S + I   V       + +L  L   ++ +  +   L    GL  VDLS N L       
Sbjct: 213 SHNSIN-VVRG---PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE------ 261

Query: 598 SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLG 657
                   +  + F               L+ L + NN     +         L+VL+L 
Sbjct: 262 -------KIMYHPFVKMQR----------LERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 658 NNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGD 712
           +N+   ++  +      L  L+L  NS+   +   LS  + L +L +  N +  +
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 8e-28
 Identities = 57/383 (14%), Positives = 130/383 (33%), Gaps = 59/383 (15%)

Query: 385 ISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNS 444
               DV +     ++   F     +  +        +     + +  F+ ++ L L+   
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 445 ISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIP 504
           I  +   +     +++++ +  N ++ YL      N+  L    +  N L+       +P
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS------LP 133

Query: 505 PF------QLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQ 556
                   +L  L + + +L       F   +   L  L +S + +     +      P 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--LQNLQLSSNRLTHVDLSLI----PS 187

Query: 557 LYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSIS 616
           L+  N S + ++     L+    +  +D S N+++     ++ +L  + L +N  + +  
Sbjct: 188 LFHANVSYNLLS----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW 243

Query: 617 PVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLT 676
            +   G    L  ++L  N     +   ++    L  L + NN     L      + +L 
Sbjct: 244 LLNYPG----LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 677 LLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDG 736
           +L L  N L   +  +    +RL +L +D N                     L+ +    
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-----------------TLKLSTH-- 338

Query: 737 QFPTELCFLTSLQILDLGYNNLS 759
                     +L+ L L +N+  
Sbjct: 339 ---------HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (280), Expect = 2e-26
 Identities = 65/370 (17%), Positives = 126/370 (34%), Gaps = 38/370 (10%)

Query: 174 IPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLS 233
           I   L        + +   ++        +  L+  + +      + K     L   S  
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLD--SFR 69

Query: 234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGS 292
            + +L L+  Q++           +I  L +  N       +   VF  +  L  L L  
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER 126

Query: 293 NDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL 351
           ND   S+P G+  N   L  L +S N+      +   + ++L ++ L SN L       +
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
            +L       ++S   L      +      + E+  S   ++  +     +        L
Sbjct: 186 PSL----FHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRG--PVNVE-----L 228

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471
               +    +    T+ + ++  L  + LS+N +  ++      +  LER+ +SNN    
Sbjct: 229 TILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN---- 282

Query: 472 YLSEIHLA--NLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQ 529
            L  ++L    +  L   D+S N L   V  +     +LE L L    +  T        
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT 340

Query: 530 NVLGYLDISR 539
             L  L +S 
Sbjct: 341 --LKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 65/346 (18%), Positives = 128/346 (36%), Gaps = 54/346 (15%)

Query: 583 VDLSSNNLSGTLPLISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEI 641
           +D+ + ++      I+    + +   N+     +   L +  R ++++LNL +       
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR-QVELLNLNDLQIEEID 85

Query: 642 PDCWMNFLYLRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
              +     ++ L +G N     LPP    ++  LT+L L++N LS        N  +L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
           +L+M  N     I     +  +S+  L L SN         L  + SL   ++ YN LS 
Sbjct: 145 TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST 200

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEY 820
                ++   A+  +D          +  S+                          +  
Sbjct: 201 -----LAIPIAVEELD---------ASHNSI------------------------NVVRG 222

Query: 821 STILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDF 880
              + L  L  L  NN + +    + +   L  ++LSYN     +      M+ +E +  
Sbjct: 223 PVNVELTIL-KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 881 SNNQLSEEIPRSVSNLTFLNLLNLSYN---YLSGEIPTSTQLQSFD 923
           SNN+L   +      +  L +L+LS+N   ++    P   +L++  
Sbjct: 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.2 bits (175), Expect = 4e-13
 Identities = 40/279 (14%), Positives = 96/279 (34%), Gaps = 26/279 (9%)

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
           I            +++              +L +  ++  + +++       L +  ++ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
            LN++  Q   +I T+      ++  L +  N      P     +  L +L L  N+LS 
Sbjct: 73  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEY 820
                  N   + T+   + + +  +         +    +F        L +    L +
Sbjct: 132 LPRGIFHNTPKLTTLS--MSNNN--LER-------IE-DDTFQATTSLQNLQLSSNRLTH 179

Query: 821 STILYLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVI 878
             +  + +L   ++S N  S      +   +A+  L+ S+N  +  +         + ++
Sbjct: 180 VDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTIL 231

Query: 879 DFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTST 917
              +N L++     + N   L  ++LSYN L  +I    
Sbjct: 232 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHP 267

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (310), Expect = 3e-29
 Identities = 71/435 (16%), Positives = 144/435 (33%), Gaps = 72/435 (16%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
            I   LQ       + +     +        + +N   ++ ++++++      L +    
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-Q 76

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           +E+L+L+  Q+E     +F     ++++ +        I  +                  
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPP---------------- 116

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
              +F ++         L  L L  N +S L          L  + +SNN L+  + +  
Sbjct: 117 --HVFQNVP-------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

Query: 478 LANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDI 537
               + L +  +S N LT  V    IP   L   ++    L       L     +  LD 
Sbjct: 167 FQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYNLLS-----TLAIPIAVEELDA 218

Query: 538 SRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLI 597
           S + I   V       + +L  L   ++ +  +   L    GL  VDLS N L       
Sbjct: 219 SHNSIN-VVRG---PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE------ 267

Query: 598 SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLG 657
                   +  + F               L+ L + NN     +         L+VL+L 
Sbjct: 268 -------KIMYHPFVKMQR----------LERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 658 NNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWI 717
           +N+   ++  +      L  L+L  NS+   +   LS  + L +L +  N +  +    +
Sbjct: 310 HNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL 365

Query: 718 GEKFSSMVILNLRSN 732
               +   + +   +
Sbjct: 366 FRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  122 bits (308), Expect = 4e-29
 Identities = 69/416 (16%), Positives = 137/416 (32%), Gaps = 76/416 (18%)

Query: 127 NPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQY 186
               +   +   +    ++        L S  +++ LNL+    + +  +       +Q 
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103

Query: 187 LDLVENSELYVDNLSWLP-----GLSLLQHLDLGGVNL----GKAFDWSLAINSLSSLRV 237
           L +  N       + +LP      + LL  L L   +L       F      ++   L  
Sbjct: 104 LYMGFN------AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF------HNTPKLTT 151

Query: 238 LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
           L +S   L+          +S+  L LSSN+     L       + +L + ++  N    
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLS- 205

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
                L    ++  LD S+N   + +         L  + L+ N+L  + T +L N    
Sbjct: 206 ----TLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNL--TDTAWLLNYP-G 255

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           +  +DLS  +LE  +   F ++  L  + +S+ ++                         
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----------------------- 292

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
                  L        +L  L LSHN +   +  +      LE + L +N     +  + 
Sbjct: 293 -------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN----SIVTLK 340

Query: 478 LANLSKLVSFDVSGNALT---LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQN 530
           L+    L +  +S N      L+     +    ++  D Q C +       L  + 
Sbjct: 341 LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD-QHCKIDYQLEHGLCCKE 395

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (285), Expect = 4e-26
 Identities = 57/332 (17%), Positives = 123/332 (37%), Gaps = 46/332 (13%)

Query: 431 HFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS 490
              +   +   ++++  L  + L     +E + L++  ++  +     A    +    + 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107

Query: 491 GNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
            NA+        +PP   + + L                  L  L + R+ +  ++P   
Sbjct: 108 FNAIRY------LPPHVFQNVPL------------------LTVLVLERNDLS-SLPRGI 142

Query: 551 WEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLS 607
           +  +P+L  L+ SN+ +   I +      T L+ + LSSN L+  + L     L   ++S
Sbjct: 143 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVS 200

Query: 608 NNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP 667
            N  S +++  +       ++ L+  +NS +  +       + L +L L +NN T     
Sbjct: 201 YNLLS-TLAIPI------AVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLTD--TA 248

Query: 668 SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727
            L +   L  + L  N L   +        RL  L +  N+    +  +      ++ +L
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVL 306

Query: 728 NLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
           +L  N               L+ L L +N++ 
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (277), Expect = 3e-25
 Identities = 64/370 (17%), Positives = 125/370 (33%), Gaps = 38/370 (10%)

Query: 174 IPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLS 233
           I   L        + +   ++        +  L+  + +      + K     L   S  
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLD--SFR 75

Query: 234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGS 292
            + +L L+  Q++           +I  L +  N       +   VF  +  L  L L  
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLER 132

Query: 293 NDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL 351
           ND   S+P G+  N   L  L +S N+      +   + ++L ++ L SN L       +
Sbjct: 133 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 191

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
            +L       ++S   L      +      + E+  S   ++             ++  L
Sbjct: 192 PSL----FHANVSYNLLS-----TLAIPIAVEELDASHNSINV--------VRGPVNVEL 234

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471
               +    +    T+ + ++  L  + LS+N +  ++      +  LER+ +SNN    
Sbjct: 235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN---- 288

Query: 472 YLSEIH--LANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQ 529
            L  ++     +  L   D+S N L   V  +     +LE L L    +  T        
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLKLSTHHT 346

Query: 530 NVLGYLDISR 539
             L  L +S 
Sbjct: 347 --LKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (266), Expect = 8e-24
 Identities = 61/388 (15%), Positives = 134/388 (34%), Gaps = 51/388 (13%)

Query: 539 RSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKA------TGLRTVDLSSNNLSG 592
           R  ++   P      S   Y   F +  I+ +  ++            + V   ++ +  
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR- 64

Query: 593 TLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNF 648
            LP        Q+E ++L++      I           +Q L +  N+     P  + N 
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV 122

Query: 649 LYLRVLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGN 707
             L VL L  N+ + +LP  +  +   LT L +  N+L     ++      L +L +  N
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 708 QFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCIS 767
           + +  +         S+   N+  N+      + L    +++ LD  +N+++        
Sbjct: 182 RLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNV 232

Query: 768 NLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKG---KELEYSTIL 824
            L+ +                  L  + L       +      + +     +++ Y   +
Sbjct: 233 ELTIL-----------------KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275

Query: 825 YLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSN 882
            +  L  + +S N     + +    +  L+ L+LS+NH    +  +      +E +   +
Sbjct: 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 883 NQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
           N +   +   +S    L  L LS+N   
Sbjct: 334 NSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.3 bits (242), Expect = 7e-21
 Identities = 65/346 (18%), Positives = 129/346 (37%), Gaps = 54/346 (15%)

Query: 583 VDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEI 641
           +D+ + ++      I+    + +   N+     +   L +  R ++++LNL +       
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR-QVELLNLNDLQIEEID 91

Query: 642 PDCWMNFLYLRVLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
              +     ++ L +G N     LPP +  ++  LT+L L++N LS        N  +L 
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
           +L+M  N     I     +  +S+  L L SN         L  + SL   ++ YN LS 
Sbjct: 151 TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLST 206

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEY 820
                ++   A+  +D          +  S+                          +  
Sbjct: 207 -----LAIPIAVEELD---------ASHNSI------------------------NVVRG 228

Query: 821 STILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDF 880
              + L  L  L  NN + +    + +   L  ++LSYN     +      M+ +E +  
Sbjct: 229 PVNVELTIL-KLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 881 SNNQLSEEIPRSVSNLTFLNLLNLSYN---YLSGEIPTSTQLQSFD 923
           SNN+L   +      +  L +L+LS+N   ++    P   +L++  
Sbjct: 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 69.6 bits (170), Expect = 3e-12
 Identities = 40/272 (14%), Positives = 94/272 (34%), Gaps = 28/272 (10%)

Query: 649 LYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQ 708
                +++              +L +  ++  + +++       L +  ++  LN++  Q
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 709 FSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISN 768
              +I T+      ++  L +  N      P     +  L +L L  N+LS        N
Sbjct: 87  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 769 LSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKG---KELEYSTILY 825
              + T+   + + +  +         +    +F        L +       ++ S I  
Sbjct: 146 TPKLTTLS--MSNNN--LER-------IE-DDTFQATTSLQNLQLSSNRLTHVDLSLIPS 193

Query: 826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
           L    ++S N  S      +   +A+  L+ S+N  +  +         + ++   +N L
Sbjct: 194 LFHA-NVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNL 244

Query: 886 SEEIPRSVSNLTFLNLLNLSYNYLSGEIPTST 917
           ++     + N   L  ++LSYN L  +I    
Sbjct: 245 TD--TAWLLNYPGLVEVDLSYNELE-KIMYHP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 42/277 (15%), Positives = 73/277 (26%), Gaps = 22/277 (7%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
           +N        L  LDLS N     + R      +L+ L L       +   +L     L+
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLK 348

Query: 186 YLDLVENSELYVDNLSWLPGLSLLQ--HLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
            L L  N        +    ++       D       +         S        L   
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 244 QLDHFHPPPIVNISSISVLD-LSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIP-- 300
            L              S  D ++S Q   + +       L     L+   N+ +  +   
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

Query: 301 -------------VGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
                        +  +  T+LR   L  +    S  N    F++L            + 
Sbjct: 469 TNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR 528

Query: 348 TGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLRE 384
                      E L+  +  LE Q+     +   LR+
Sbjct: 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  121 bits (305), Expect = 9e-29
 Identities = 95/487 (19%), Positives = 175/487 (35%), Gaps = 39/487 (8%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
              + L LS   +     P I  +S + VL LS N+      +   VF    +L YLD+ 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI---RSLDFHVFLFNQDLEYLDVS 108

Query: 292 SNDFQGSIPVGLQNLTSLRHLDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGF 350
            N  Q +I      + SLRHLDLS+NDF+   +     + + L  + L +   +      
Sbjct: 109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 351 LANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDR 410
           +A+L  S  +LDL S  ++G    S     N   + L     S    ++    ++    +
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK 470
           L +  +        +T      +    L ++   I      S+          +      
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN-- 282

Query: 471 GYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQN 530
             +  + +        F  S  AL             +E +  Q         + + ++ 
Sbjct: 283 --IYNLTITERIDREEFTYSETALK---------SLMIEHVKNQVFLFSKEALYSVFAE- 330

Query: 531 VLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSNN 589
            +    +S S     +      +     FLNF+ +     +    S    L+T+ L  N 
Sbjct: 331 -MNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 590 LSGTLPLISF------QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPD 643
           L      ++        LE++D+S N+ +       C      + VLNL +N  +G +  
Sbjct: 389 LK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-ESILVLNLSSNMLTGSVFR 446

Query: 644 CWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPE-SLSNCNRLVSL 702
           C      ++VL+L NN    ++P  +  L +L  L++  N L   +P+        L  +
Sbjct: 447 CL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502

Query: 703 NMDGNQF 709
            +  N +
Sbjct: 503 WLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 83/494 (16%), Positives = 163/494 (32%), Gaps = 54/494 (10%)

Query: 135 HLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSE 194
               L LS NS        +  + +L+ L LS    + +  H       L+YLD+  N  
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-- 110

Query: 195 LYVDNLSWLP--GLSLLQHLDLGG-----VNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
                L  +    ++ L+HLDL       + + K F       +L+ L  L LS  +   
Sbjct: 111 ----RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFG------NLTKLTFLGLSAAKFRQ 160

Query: 248 FHPPPIVNIS-SISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNL 306
               P+ ++  S  +LDL S               + N   L L  +           ++
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETE---SLQIPNTTVLHLVFHPNSLFSVQVNMSV 217

Query: 307 TSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQ 366
            +L HL LS    N             +    R  +L  ++T      +    V      
Sbjct: 218 NALGHLQLSNIKLN---DENCQRLMTFLSELTRGPTLL-NVTLQHIETTWKCSVKLFQFF 273

Query: 367 QLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLT 426
                          +  +++ ++ +++ I      +S      L    +          
Sbjct: 274 WPR-----------PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE 322

Query: 427 SQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVS 486
           +    F  ++   LS +    +        SS   +  + N           + L +L +
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQT 381

Query: 487 FDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG--PTFPFWLLSQNV--LGYLDISRSGI 542
             +  N L        +    +  L+     L    +  +         +  L++S + +
Sbjct: 382 LILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 543 QDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQ- 600
             +V   F    P++  L+  N+RI   IP  ++    L+ ++++SN L  ++P   F  
Sbjct: 441 TGSV---FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495

Query: 601 ---LESIDLSNNAF 611
              L+ I L +N +
Sbjct: 496 LTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 87/496 (17%), Positives = 160/496 (32%), Gaps = 92/496 (18%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ---GSITGFLANL 354
            +P  L      + L LS N  +      ++  S L  + L  N ++     +  F  +L
Sbjct: 45  HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102

Query: 355 SASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESW 414
               E LD+S  +L+  I      + +LR + LS                    +  +  
Sbjct: 103 ----EYLDVSHNRLQN-IS--CCPMASLRHLDLS-------------------FNDFDV- 135

Query: 415 DMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLS 474
            +  CK FG+LT        L  L LS      L    L  ++ L    +  + +  ++ 
Sbjct: 136 -LPVCKEFGNLTK-------LTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184

Query: 475 EIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGY 534
                +L                             L L             +S N LG+
Sbjct: 185 GGETESLQIP----------------------NTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 535 LDISRSGIQDTVPARFW------EASPQLYFLNFSNSRING----EIPNLSKATGLRTVD 584
           L +S   + D    R           P L  +   +         ++        +  ++
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 585 LSSNNLSGTLPLISFQLESI--------DLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636
           + +  ++  +    F              + N  F  S   +       E+ +  L  + 
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF--AEMNIKMLSISD 340

Query: 637 FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS--GRIPESLS 694
                  C  +      LN   N FT ++     +L  L  L LQ+N L    ++     
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400

Query: 695 NCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN-IFDGQFPTELCFLTSLQILDL 753
           N + L +L++  N  +            S+++LNL SN +    F    C    +++LDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDL 457

Query: 754 GYNNLSGAIPKCISNL 769
             N +  +IPK +++L
Sbjct: 458 HNNRIM-SIPKDVTHL 472

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 1e-17
 Identities = 92/493 (18%), Positives = 163/493 (33%), Gaps = 77/493 (15%)

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
              +L LS NSIS L    +  LS L  + LS+N ++  L          L   DVS N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 494 LTLKVGPDWIPPFQLEKLDLQS---CHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
           L   +    +    L  LDL       L     F  L++  L +L +S +  +       
Sbjct: 112 LQ-NISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTK--LTFLGLSAAKFRQLDLLPV 166

Query: 551 WEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLS--------GTLPLISFQLE 602
                    L+  +  I G      +      + L  +  S            L   QL 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 603 SIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV---LNLGNN 659
           +I L++      ++ +        L  + L++   + +       F + R    LN+ N 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 660 NFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGE 719
             T  +     +     L                     L+  ++    F       +  
Sbjct: 287 TITERIDREEFTYSETAL-------------------KSLMIEHVKNQVFLF-SKEALYS 326

Query: 720 KFSSMVILNLRSNIFDGQFPTELCF--LTSLQILDLGYNNLSGAIPKCISNLSAMVTVDY 777
            F+ M I  L  +  D  F   +C    +S   L+   N  + ++ +  S L        
Sbjct: 327 VFAEMNIKMLSIS--DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-------- 376

Query: 778 PLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNF 837
                   +    L R+ L   ++F                +  + L     +D+S N+ 
Sbjct: 377 ------KRLQTLILQRNGL---KNFFKVALM---------TKNMSSLET---LDVSLNSL 415

Query: 838 -SGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNL 896
            S           ++  LNLS N  +G +   +     ++V+D  NN++   IP+ V++L
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDVTHL 472

Query: 897 TFLNLLNLSYNYL 909
             L  LN++ N L
Sbjct: 473 QALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.4 bits (180), Expect = 2e-13
 Identities = 48/349 (13%), Positives = 119/349 (34%), Gaps = 40/349 (11%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPH--QLGNLS 182
             N ++LH         S              +  +K  + +       +    +   L 
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 183 KLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSG 242
            +    +    +  V    +      +++L++  + + +  D      S ++L+ L +  
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMI-- 309

Query: 243 CQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPV 301
                                + +  F         ++   + +    L  +D      V
Sbjct: 310 -------------------EHVKNQVF---LFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 302 GLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ--GSITGFLANLSASIE 359
              + +S   L+ + N F  S+    ++   L  + L+ N L+    +     N+S S+E
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLE 406

Query: 360 VLDLSSQQLE-GQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTG 418
            LD+S   L      R+     ++  ++LS   ++  +         C+  +++  D+  
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHN 459

Query: 419 CKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
            +I   +   + H ++L  L ++ N +  +       L+SL+ + L +N
Sbjct: 460 NRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 2e-12
 Identities = 59/348 (16%), Positives = 108/348 (31%), Gaps = 38/348 (10%)

Query: 573 NLSKATGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQ 628
           ++S  + LR + LS N +  +L    F     LE +D+S+N    +IS          L+
Sbjct: 71  DISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISC----CPMASLR 124

Query: 629 VLNLENNSFSGEIPDCWM--NFLYLRVLNLGNNNFTGNLPPSLGSLGSLTL-LHLQKNSL 685
            L+L  N F   +P C    N   L  L L    F       +  L    + L L    +
Sbjct: 125 HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 686 SGRIPESLSNCNRLV-SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTEL-- 742
            G   ESL   N  V  L    N                + + N++ N  + Q       
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 743 CFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSF 802
                  +L++   ++       +          +P    +  I + ++           
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFF----WPRPVEYLNIYNLTITE--------- 290

Query: 803 SDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFS 862
                    + + +     T L  + +  +    F        +    +    LS +   
Sbjct: 291 --------RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342

Query: 863 GRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
                   +  S   ++F+ N  ++ + +  S L  L  L L  N L 
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFK--GMIPHQLGNLSKLQYLDLVENS 193
             +L+ + N F   + +   ++ +L+ L L   G K    +     N+S L+ LD+  NS
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPI 253
                          +  L+L    L  +    L       ++VL L   ++    P  +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK----VKVLDLHNNRIMSI-PKDV 469

Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQ 296
            ++ ++  L+++SNQ    S+       L++L Y+ L  N + 
Sbjct: 470 THLQALQELNVASNQL--KSVPDGVFDRLTSLQYIWLHDNPWD 510

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (294), Expect = 1e-28
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 30/288 (10%)

Query: 131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLV 190
            +        ++ +S    +     S   +K L+LSG     +    L   +KL+ L+L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 191 ENS--------------ELYVDN--LSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSS 234
            N                L ++N  +  L     ++ L     N+       ++ +    
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-----RVSCSRGQG 121

Query: 235 LRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSN 293
            + + L+  ++           S +  LDL  N+   +++  + +      L +L+L  N
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYN 179

Query: 294 DFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353
                +   +     L+ LDLS N   + +     S + +  ISLR+N L   I   L  
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 354 LSASIEVLDLSSQQLE-GQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
              ++E  DL       G +   F +   ++ ++   VK     +E  
Sbjct: 236 SQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (280), Expect = 7e-27
 Identities = 57/329 (17%), Positives = 122/329 (37%), Gaps = 45/329 (13%)

Query: 425 LTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKL 484
           +     +        ++ +S+   + S      +++ + LS N L   +S   LA  +KL
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKL 60

Query: 485 VSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQD 544
              ++S N L            +     L +                L  LD++ + +Q+
Sbjct: 61  ELLNLSSNVLYE------TLDLE----SLST----------------LRTLDLNNNYVQE 94

Query: 545 TVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF----Q 600
                     P +  L+ +N+ I+  +   S+  G + + L++N ++  L  +      +
Sbjct: 95  ------LLVGPSIETLHAANNNIS-RVS-CSRGQGKKNIYLANNKIT-MLRDLDEGCRSR 145

Query: 601 LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNN 660
           ++ +DL  N    +++          L+ LNL+ N    ++    + F  L+ L+L +N 
Sbjct: 146 VQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNK 202

Query: 661 FTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEK 720
               + P   S   +T + L+ N L   I ++L     L   ++ GN F          K
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 721 FSSMVILNLRSNIFDGQFPTELCFLTSLQ 749
              +  +  ++         E C + +L 
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 8e-26
 Identities = 50/305 (16%), Positives = 113/305 (37%), Gaps = 23/305 (7%)

Query: 229 INSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYL 288
             + +  ++ +++   L         +  ++  LDLS N    + +  + +   + L  L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELL 63

Query: 289 DLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSIT 348
           +L SN    ++   L++L++LR LDL+ N         L    ++  +   +N++     
Sbjct: 64  NLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSC 116

Query: 349 GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCIS 408
                     + + L++ ++        G    ++ + L   +    I  +     +  S
Sbjct: 117 SRGQGK----KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE----IDTVNFAELAASS 168

Query: 409 DRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNT 468
           D LE  ++    I+  +  Q+  F  L +L LS N ++  +       + +  + L NN 
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK 225

Query: 469 LKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLL 527
           L   + +  L     L  FD+ GN        D+     +++ +  Q+            
Sbjct: 226 LV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 528 SQNVL 532
           +   L
Sbjct: 284 TVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 7e-25
 Identities = 44/344 (12%), Positives = 102/344 (29%), Gaps = 72/344 (20%)

Query: 149 GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSL 208
            I     +  + K   ++ +  K  +     +   ++ LDL  N       LS +     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN------PLSQIS---- 50

Query: 209 LQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ 268
                            +  +   + L +L LS   L       + ++S++  LDL++N 
Sbjct: 51  -----------------AADLAPFTKLELLNLSSNVLY--ETLDLESLSTLRTLDLNNNY 91

Query: 269 FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLA 328
                  +  +    ++  L   +N+    +          +++ L+ N           
Sbjct: 92  -------VQELLVGPSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEG 141

Query: 329 SFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLS 388
             S + ++ L+ N +       LA  S ++E L+L    +   +         L+ + LS
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLS 199

Query: 389 DVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL 448
             K++                               +  +      +  + L +N +   
Sbjct: 200 SNKLA------------------------------FMGPEFQSAAGVTWISLRNNKLVL- 228

Query: 449 IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
           I  +L    +LE   L  N           +   ++ +      
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 3e-23
 Identities = 52/333 (15%), Positives = 114/333 (34%), Gaps = 27/333 (8%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
            +      +  +  + ++    Q+  +++ LDLS N  +      LA F+ L  ++L SN
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI-L 400
            L  ++   L +LS ++  LDL++  ++           ++  +  ++      IS +  
Sbjct: 69  VLYETLD--LESLS-TLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN----ISRVSC 116

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL-IPSSLGGLSSL 459
                      ++  +   KI        G    +  L L  N I  +          +L
Sbjct: 117 SRGQG-----KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 460 ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG 519
           E + L  N +     ++  A L  L   D+S N L   +GP++     +  + L++  L 
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTL---DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 520 PTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATG 579
                 L     L + D+  +G        F+  + ++  +     +   ++   ++   
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV---AKQTVKKLTGQNEEEC 283

Query: 580 LRTVDLSSNNLSGTLPLISFQLESIDLSNNAFS 612
                              F    I L ++   
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (250), Expect = 5e-23
 Identities = 43/338 (12%), Positives = 99/338 (29%), Gaps = 50/338 (14%)

Query: 600 QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNN 659
           + +   +++++        L       ++ L+L  N  S         F  L +LNL +N
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 660 NFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGE 719
                    L SL +L  L L  N +       L     + +L+   N  S  +      
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC---S 117

Query: 720 KFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG-AIPKCISNLSAMVTVDYP 778
           +      + L +N        +    + +Q LDL  N +      +  ++   +  ++  
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN-- 175

Query: 779 LGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFS 838
                       L  + +                    +++   +   +  +DLS N  +
Sbjct: 176 ------------LQYNFI-------------------YDVKGQVVFAKLKTLDLSSNKLA 204

Query: 839 GEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTF 898
             +  E      +  ++L  N     I  ++   +++E  D   N               
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKN 261

Query: 899 LNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSP 936
             +  ++   +      + +  +       G   C   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 46/268 (17%), Positives = 89/268 (33%), Gaps = 32/268 (11%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
             L     L  LDL+ N       + L     ++ L+ +       +          + +
Sbjct: 74  LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNI 125

Query: 188 DLVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSG 242
            L  N       ++ L        S +Q+LDL   N     +++    S  +L  L L  
Sbjct: 126 YLANN------KITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQY 178

Query: 243 CQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG 302
             +        V  + +  LDLSSN+              + + ++ L +N     I   
Sbjct: 179 NFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPEFQ---SAAGVTWISLRNNKLV-LIEKA 232

Query: 303 LQNLTSLRHLDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL 361
           L+   +L H DL  N F+  ++ ++ +    +  ++ ++      +TG       ++  L
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTG-QNEEECTVPTL 288

Query: 362 DLSSQQLEGQIPRSFG-RLCNLREISLS 388
                     +P  F  RL  L      
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 56/298 (18%)

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
           I +   N    ++  + +++    L     S  ++  L L  N LS      L+   +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
            LN+  N    +      E  S++  L+L +N        EL    S++ L    NN+S 
Sbjct: 62  LLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS- 112

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEY 820
            +                      G  +  L  + +                     L  
Sbjct: 113 RVSC----------------SRGQGKKNIYLANNKI-------------------TMLRD 137

Query: 821 STILYLVAL--IDLSKNNFSG-EIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEV 877
                   +  +DL  N                L  LNL YN     +   +     ++ 
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKT 195

Query: 878 IDFSNNQLSEEIPRSVSNLTFLNLLNLSYN---YLSGEIPTSTQLQSFDASCFIGNDL 932
           +D S+N+L+  +     +   +  ++L  N    +   +  S  L+ FD     GN  
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 19/150 (12%), Positives = 38/150 (25%), Gaps = 23/150 (15%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
              + F  L  LDLS N     +     S   + +++L       +I   L     L++ 
Sbjct: 185 KGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
           DL  N         +      +Q +                  ++  L       C +  
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAK---------------QTVKKLTGQNEEECTVPT 287

Query: 248 FHPPPIVNISSIS------VLDLSSNQFDQ 271
                      +       ++ L  +    
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 66/346 (19%), Positives = 113/346 (32%), Gaps = 53/346 (15%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
                 LDL  N           S   L+ L L+      + P    NL  L+ L L  N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 193 SELYVDNLSWLP-----GLSLLQHLDLGGVNL----GKAFDWSLAINSLSSLRVLRLSGC 243
                  L  +P     GLS L  LD+    +       F        L +L+ L +   
Sbjct: 91  ------RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ------DLYNLKSLEVGDN 138

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL 303
            L +        ++S+  L L        S+    +  L  L+ L L   +         
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 304 QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDL 363
           + L  L+ L++S+  +  ++        NL  +S+   +L       + +L   +  L+L
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNL 255

Query: 364 SSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFG 423
           S   +          L  L+EI L   ++            + +              F 
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQL------------AVVEPYA----------FR 293

Query: 424 HLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTL 469
            L         L  L +S N ++ L  S    + +LE ++L +N L
Sbjct: 294 GLN-------YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 2e-26
 Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 18/271 (6%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
               F HL  L+L+ N      P    ++  L+ L L     K +       LS L  LD
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110

Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNL----GKAFDWSLAINSLSSLRVLRLSGCQ 244
           + EN  + + +      L  L+ L++G  +L     +AF        L+SL  L L  C 
Sbjct: 111 ISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFS------GLNSLEQLTLEKCN 163

Query: 245 LDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGL 303
           L       + ++  + VL L        + +  + F  L  L  L++    +  ++    
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNI---NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 304 QNLTSLRHLDLSYNDFNSSIPNW-LASFSNLVHISLRSNSLQGSITGFLANLSASIEVLD 362
               +L  L +++ +  +++P   +     L  ++L  N +       L  L   ++ + 
Sbjct: 221 LYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQ 278

Query: 363 LSSQQLEGQIPRSFGRLCNLREISLSDVKMS 393
           L   QL    P +F  L  LR +++S  +++
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (273), Expect = 5e-25
 Identities = 67/372 (18%), Positives = 127/372 (34%), Gaps = 79/372 (21%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
             +     +LDL   +++      F    +L E+ L++      +S +            
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI----VSAVEP---------- 73

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471
                     F +L        +L +L L  N +  +      GLS+L ++ +S N +  
Sbjct: 74  --------GAFNNLF-------NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV- 117

Query: 472 YLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPP--FQ----LEKLDLQSCHLGPTFPFW 525
            L +    +L  L S +V  N L       +I    F     LE+L L+ C+L       
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLV------YISHRAFSGLNSLEQLTLEKCNL------T 165

Query: 526 LLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTV 583
            +    L +L                     L  L   +  IN  I +    +   L+ +
Sbjct: 166 SIPTEALSHL-------------------HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVL 205

Query: 584 DLSSNNLSGTLPLISFQ---LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
           ++S      T+         L S+ +++   + ++  +    +   L+ LNL  N  S  
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV-YLRFLNLSYNPIS-T 262

Query: 641 IPDCW-MNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNR 698
           I        L L+ + L        + P +   L  L +L++  N L+        +   
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 699 LVSLNMDGNQFS 710
           L +L +D N  +
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (273), Expect = 5e-25
 Identities = 74/422 (17%), Positives = 139/422 (32%), Gaps = 99/422 (23%)

Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLS 315
           +   +LDL  N+    +L         +L  L+L  N    ++  G   NL +LR L L 
Sbjct: 32  TETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR 88

Query: 316 YNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRS 375
            N             SNL  + +  N +   +     +L  +++ L++    L     R+
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRA 147

Query: 376 FGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSL 435
           F  L +L +++L        ++ I                    +   HL         L
Sbjct: 148 FSGLNSLEQLTLEKCN----LTSIPT------------------EALSHLHG-------L 178

Query: 436 DSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT 495
             L L H +I+ +   S   L  L+ + +S+      ++   L  L+             
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN------------- 225

Query: 496 LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASP 555
                       L  L +  C+L                           VP        
Sbjct: 226 ------------LTSLSITHCNL-------------------------TAVPYLAVRHLV 248

Query: 556 QLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISFQ----LESIDLSNN 609
            L FLN S + I+  I    L +   L+ + L    L+  +   +F+    L  +++S N
Sbjct: 249 YLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

Query: 610 AFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFL--YLRVLNLGNNNFTGNLPP 667
             + ++   + + +   L+ L L++N  +    DC + ++      LN      T   P 
Sbjct: 307 QLT-TLEESVFHSVG-NLETLILDSNPLAC---DCRLLWVFRRRWRLNFNRQQPTCATPE 361

Query: 668 SL 669
            +
Sbjct: 362 FV 363

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (262), Expect = 1e-23
 Identities = 67/332 (20%), Positives = 107/332 (32%), Gaps = 38/332 (11%)

Query: 581 RTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
           R V             I  +   +DL  N    +++          L+ L L  N  S  
Sbjct: 14  RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFP-HLEELELNENIVSAV 71

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRL 699
            P  + N   LR L L +N     +P      L +LT L + +N +   +     +   L
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 700 VSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
            SL +  N     I        +S+  L L            L  L  L +L L + N++
Sbjct: 131 KSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 760 GAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELE 819
                    L  +                  L  S  P   + +         +    L 
Sbjct: 190 AIRDYSFKRLYRLKV----------------LEISHWPYLDTMTP---NCLYGLNLTSL- 229

Query: 820 YSTILYLVALIDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVI 878
                       ++  N +  +P      LV LR LNLSYN  S      +  +  ++ I
Sbjct: 230 -----------SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277

Query: 879 DFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
                QL+   P +   L +L +LN+S N L+
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 1e-22
 Identities = 57/359 (15%), Positives = 125/359 (34%), Gaps = 48/359 (13%)

Query: 535 LDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSG 592
           +   R      VP        +   L+   +RI   +     +    L  ++L+ N +S 
Sbjct: 16  VLCHRKRF-VAVPEGI---PTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVS- 69

Query: 593 TLPLISFQ----LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNF 648
            +   +F     L ++ L +N     I   +  G+   L  L++  N     +   + + 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDL 127

Query: 649 LYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQ 708
             L+ L +G+N+       +   L SL  L L+K +L+    E+LS+ + L+ L +    
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 709 FSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISN 768
            +  I  +  ++   + +L +    +         +  +L  L + + NL+      + +
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 769 LSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVA 828
           L  +  ++  L      I+        +       +             L+         
Sbjct: 247 LVYLRFLN--LSYNP--IST-------IE-GSMLHEL----------LRLQE-------- 276

Query: 829 LIDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS 886
            I L     +  +       L  LR LN+S N  +        ++ ++E +   +N L+
Sbjct: 277 -IQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.3 bits (175), Expect = 7e-13
 Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 15/173 (8%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
           +L H   L  L L   +           + +LK L +S   +   +         L  L 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           +         NL+ +P      L  L+ L+L    +       L    L  L+ ++L G 
Sbjct: 231 ITHC------NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH--ELLRLQEIQLVGG 282

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQ 296
           QL    P     ++ + VL++S NQ    +L  S    + NL  L L SN   
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQL--TTLEESVFHSVGNLETLILDSNPLA 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (288), Expect = 5e-27
 Identities = 75/470 (15%), Positives = 150/470 (31%), Gaps = 77/470 (16%)

Query: 235 LRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSND 294
                 +  ++          +++++ LD  ++        ++ +  L+ L  L   SN+
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD----MTGIEKLTGLTKLICTSNN 75

Query: 295 FQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANL 354
              ++ +     T+L +L    N   +++   +   + L +++  +N L          L
Sbjct: 76  IT-TLDLS--QNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 355 SASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESW 414
                 L+ +   L  +I         L E+     K        LD+       +L + 
Sbjct: 130 ----TYLNCARNTLT-EID--VSHNTQLTELDCHLNK----KITKLDVTPQT---QLTTL 175

Query: 415 DMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLS 474
           D +  KI       +   K L+ L    N+I+ L    L     L  +  S+N     L+
Sbjct: 176 DCSFNKI---TELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN----KLT 225

Query: 475 EIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGY 534
           EI +  L++L  FD S N LT       +    L KL    C            Q  L  
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTE------LDVSTLSKLTTLHC-----------IQTDLLE 268

Query: 535 LDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTL 594
           +D++ +               QL +      R   +  +++  T L  +D  +  ++  L
Sbjct: 269 IDLTHN--------------TQLIYFQAEGCRKI-KELDVTHNTQLYLLDCQAAGIT-EL 312

Query: 595 PLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV 653
            L    +L  + L+N   +  +          +L+ L+  N     +          L  
Sbjct: 313 DLSQNPKLVYLYLNNTELT-ELDVSHNT----KLKSLSCVNAHIQ-DFSSV-GKIPALNN 365

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTL-LHLQKNSLSGRIPESLSNCNRLVSL 702
                      +P    +  SLT+ +        G           +   
Sbjct: 366 NFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQ 414

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.8 bits (249), Expect = 5e-22
 Identities = 70/455 (15%), Positives = 141/455 (30%), Gaps = 79/455 (17%)

Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF 376
             FN   P+      N       +  +Q + T     L+ ++  LD  +  +        
Sbjct: 9   QSFNDWFPD-----DNFASEVAAAFEMQATDTISEEQLA-TLTSLDCHNSSITDMTG--I 60

Query: 377 GRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLD 436
            +L  L ++  +      +I+ +                             +    +L 
Sbjct: 61  EKLTGLTKLICTS----NNITTL----------------------------DLSQNTNLT 88

Query: 437 SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTL 496
            L    N ++ L    +  L+ L  +    N     L+++ ++    L   + + N LT 
Sbjct: 89  YLACDSNKLTNL---DVTPLTKLTYLNCDTN----KLTKLDVSQNPLLTYLNCARNTLTE 141

Query: 497 KVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQ 556
               D     QL +LD               +Q  L  LD S + I +   ++       
Sbjct: 142 ---IDVSHNTQLTELDCHLNKKITKLDVTPQTQ--LTTLDCSFNKITELDVSQN----KL 192

Query: 557 LYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSI 615
           L  LN   + I     +L++   L  +D SSN L+  + +    QL   D S N  +  +
Sbjct: 193 LNRLNCDTNNI--TKLDLNQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLT-EL 248

Query: 616 SPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSL 675
                +    +L  L+        EI     +   L             L   +     L
Sbjct: 249 DVSTLS----KLTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIKELD--VTHNTQL 299

Query: 676 TLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFD 735
            LL  Q   ++      LS   +LV L ++  + + ++        + +  L+  +    
Sbjct: 300 YLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELDV---SHNTKLKSLSCVNAHIQ 352

Query: 736 GQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
               + +  + +L               + ++N S
Sbjct: 353 DF--SSVGKIPALNNNFEAEGQTITMPKETLTNNS 385

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.6 bits (246), Expect = 9e-22
 Identities = 67/369 (18%), Positives = 115/369 (31%), Gaps = 55/369 (14%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
           S      L  LD   +S    +   +  +  L  L  +       +   L   + L YL 
Sbjct: 37  SEEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLA 91

Query: 189 LVENSELYVDNLSWLP--GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLD 246
              N       L+ L    L+ L +L+     L       L ++    L  L  +   L 
Sbjct: 92  CDSN------KLTNLDVTPLTKLTYLNCDTNKLT-----KLDVSQNPLLTYLNCARNTLT 140

Query: 247 HFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNL 306
                 + + + ++ LD   N      +    V   + L  LD   N     + V     
Sbjct: 141 EI---DVSHNTQLTELDCHLN----KKITKLDVTPQTQLTTLDCSFNKIT-ELDVS--QN 190

Query: 307 TSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQ 366
             L  L+   N+  + +   L     L  +   SN L   I   +  L+  +   D S  
Sbjct: 191 KLLNRLNCDTNNI-TKLD--LNQNIQLTFLDCSSNKLT-EID--VTPLT-QLTYFDCSVN 243

Query: 367 QLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLT 426
            L  ++      L  L  +         D+ EI    +      L  +   GC+    L 
Sbjct: 244 PLT-ELD--VSTLSKLTTLHCIQ----TDLLEI--DLTHNTQ--LIYFQAEGCRKIKELD 292

Query: 427 SQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVS 486
             + H   L  L      I+ L    L     L  + L+N      L+E+ +++ +KL S
Sbjct: 293 --VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNT----ELTELDVSHNTKLKS 343

Query: 487 FDVSGNALT 495
                  + 
Sbjct: 344 LSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 63/461 (13%), Positives = 145/461 (31%), Gaps = 80/461 (17%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL 219
                 +    +         L+ L  LD   +S   + +++ +  L+ L  L     N+
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSS---ITDMTGIEKLTGLTKLICTSNNI 76

Query: 220 GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWV 279
                 +L ++  ++L  L     +L +     +  ++ ++ L+  +N+     L +S  
Sbjct: 77  T-----TLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL--TKLDVS-- 124

Query: 280 FGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLR 339
                L YL+   N     I V   + T L  LD   N   + +   +   + L  +   
Sbjct: 125 -QNPLLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 340 SNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
            N +          L      L+  +  +  ++     +   L  +  S  K+++     
Sbjct: 179 FNKITELDVSQNKLL----NRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE----- 226

Query: 400 LDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSL 459
           +D+ +      L  +D +   +       +     L +L      +  +    L   + L
Sbjct: 227 IDV-TPLTQ--LTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLEI---DLTHNTQL 277

Query: 460 ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT-LKVGPDWIPPFQLEKLDLQSCHL 518
                        + E+ + + ++L   D     +T L +        +L  L       
Sbjct: 278 IYFQAEGCRK---IKELDVTHNTQLYLLDCQAAGITELDLS----QNPKLVYLY------ 324

Query: 519 GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKAT 578
                   L+   L  LD+S               + +L  L+  N+ I  +  ++ K  
Sbjct: 325 --------LNNTELTELDVS--------------HNTKLKSLSCVNAHIQ-DFSSVGKIP 361

Query: 579 GLRTVDLSSNNLSGTLPL-ISFQLESIDLSNNAFSGSISPV 618
            L     +           ++    +I +S +      +P+
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 56/370 (15%), Positives = 110/370 (29%), Gaps = 55/370 (14%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
             +     L  L  + N+    +   L     L YL         +    +  L+KL YL
Sbjct: 58  TGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYL 111

Query: 188 DLVENSELYVDNLSWLP--GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQL 245
           +   N       L+ L      LL +L+     L       + ++  + L  L     + 
Sbjct: 112 NCDTN------KLTKLDVSQNPLLTYLNCARNTLT-----EIDVSHNTQLTELDCHLNKK 160

Query: 246 DHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQN 305
                  +   + ++ LD S N+     L +S       L  L+  +N+    + +    
Sbjct: 161 --ITKLDVTPQTQLTTLDCSFNKI--TELDVS---QNKLLNRLNCDTNNIT-KLDLN--Q 210

Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSS 365
              L  LD S N   + I   +   + L +     N L       L+ L      L    
Sbjct: 211 NIQLTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTELDVSTLSKL----TTLHCIQ 263

Query: 366 QQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHL 425
             L  +I         L        +  +++       +      L   D     I    
Sbjct: 264 TDLL-EID--LTHNTQLIYFQAEGCRKIKELD-----VTHNTQ--LYLLDCQAAGI---T 310

Query: 426 TSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLV 485
              +     L  L+L++  ++ L    +   + L+ +   N  ++   S +    +  L 
Sbjct: 311 ELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFSSVG--KIPALN 364

Query: 486 SFDVSGNALT 495
           +   +     
Sbjct: 365 NNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.1 bits (237), Expect = 1e-20
 Identities = 72/425 (16%), Positives = 127/425 (29%), Gaps = 77/425 (18%)

Query: 500 PDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYF 559
            DW P          +  +  T          L  LD   S I D       E    L  
Sbjct: 12  NDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGI---EKLTGLTK 68

Query: 560 LNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPV 618
           L  +++ I     +LS+ T L  +   SN L+  L +    +L  ++   N  +  +   
Sbjct: 69  LICTSNNI--TTLDLSQNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLT-KLDVS 124

Query: 619 LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLL 678
                   L  LN   N+ + EI     +   L  L+   N         +     LT L
Sbjct: 125 QNP----LLTYLNCARNTLT-EIDVS--HNTQLTELDCHLNKKIT--KLDVTPQTQLTTL 175

Query: 679 HLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQF 738
               N ++      +S    L  LN D N  +  +      +   +  L+  SN      
Sbjct: 176 DCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNKL---- 224

Query: 739 PTELCF--LTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCL 796
            TE+    LT L   D   N L+      +S L+                          
Sbjct: 225 -TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLT-------------------------- 257

Query: 797 PRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNL 856
                         L     +L    + +   LI            ++VT    L  L+ 
Sbjct: 258 -------------TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304

Query: 857 SYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS 916
                +      +     +  +  +N +L+ E+   VS+ T L  L+    ++  +  + 
Sbjct: 305 QAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSV 357

Query: 917 TQLQS 921
            ++ +
Sbjct: 358 GKIPA 362

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 56/373 (15%), Positives = 115/373 (30%), Gaps = 72/373 (19%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
            +     L YL+   N     +   +     L YLN +           + + ++L  LD
Sbjct: 101 DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELD 154

Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF 248
              N ++   +++       L  LD     +       L ++    L  L      +   
Sbjct: 155 CHLNKKITKLDVTPQTQ---LTTLDCSFNKIT-----ELDVSQNKLLNRLNCDTNNITKL 206

Query: 249 HPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTS 308
               +     ++ LD SSN+     + ++    L+ L Y D   N     + V    L+ 
Sbjct: 207 ---DLNQNIQLTFLDCSSNKL--TEIDVT---PLTQLTYFDCSVNPLT-ELDVS--TLSK 255

Query: 309 LRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL 368
           L  L     D    I   L   + L++           +   + + +  + +LD  +  +
Sbjct: 256 LTTLHCIQTDL-LEID--LTHNTQLIYFQAEGCRKIKELD--VTHNT-QLYLLDCQAAGI 309

Query: 369 EGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQ 428
             ++     +   L  + L++ +    ++E+                             
Sbjct: 310 T-ELD--LSQNPKLVYLYLNNTE----LTEL----------------------------D 334

Query: 429 IGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTL----KGYLSEIHLANLSKL 484
           + H   L SL   +  I     SS+G + +L     +        K  L+   L      
Sbjct: 335 VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

Query: 485 VSFDVSGNALTLK 497
              D  GN + ++
Sbjct: 393 DLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 6e-18
 Identities = 82/509 (16%), Positives = 159/509 (31%), Gaps = 123/509 (24%)

Query: 411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK 470
             S      ++    T       +L SL   ++SI+ +  + +  L+ L +++ ++N   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN--- 74

Query: 471 GYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQN 530
             ++ + L+  + L       N LT     D  P  +L  L+                 N
Sbjct: 75  -NITTLDLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNC--------------DTN 116

Query: 531 VLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNL 590
            L  LD+S++              P L +LN + + +  EI  +S  T L  +D   N  
Sbjct: 117 KLTKLDVSQN--------------PLLTYLNCARNTLT-EID-VSHNTQLTELDCHLNKK 160

Query: 591 SGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFL 649
              L +    QL ++D S N                ++  L++  N              
Sbjct: 161 ITKLDVTPQTQLTTLDCSFN----------------KITELDVSQNK------------- 191

Query: 650 YLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQF 709
            L  LN   NN T  L   L     LT L    N L+  I   ++   +L   +   N  
Sbjct: 192 LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL 245

Query: 710 SGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNL 769
           + ++        S +  L+            E+    + Q++              +++ 
Sbjct: 246 T-ELDVS---TLSKLTTLHCIQTDL-----LEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296

Query: 770 SAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829
           + +  +D              +                         EL+ S    LV L
Sbjct: 297 TQLYLLD---------CQAAGI------------------------TELDLSQNPKLVYL 323

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
             L+    + E+ V  +    L+SL+    H       S+G + ++     +  Q     
Sbjct: 324 -YLNNTELT-ELDV--SHNTKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMP 377

Query: 890 PRSVSNLTFLNLLNLSYNYLSGEIPTSTQ 918
             +++N +    ++       G       
Sbjct: 378 KETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 54/316 (17%), Positives = 102/316 (32%), Gaps = 65/316 (20%)

Query: 627 LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS 686
           L  L+  N+S + ++         L  L   +NN T  L   L    +LT L    N L+
Sbjct: 44  LTSLDCHNSSIT-DMTGIE-KLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT 98

Query: 687 GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLT 746
             +   ++   +L  LN D N+ +    +    +   +  LN   N        ++   T
Sbjct: 99  -NLD--VTPLTKLTYLNCDTNKLTKLDVS----QNPLLTYLNCARNTLT---EIDVSHNT 148

Query: 747 SLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPI 806
            L  LD   N     +   ++  + + T+D                              
Sbjct: 149 QLTELDCHLNKKITKLD--VTPQTQLTTLD------------------------------ 176

Query: 807 EKAFLVMKGKELEYSTILYLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR 864
                     ++    +     L  ++   NN +    +++   + L  L+ S N  +  
Sbjct: 177 ------CSFNKITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-E 226

Query: 865 IPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDA 924
           I   +  +  +   D S N L+ E+   VS L+ L  L+     L  EI  +   Q    
Sbjct: 227 ID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYF 280

Query: 925 SCFIGNDLCGSPLSRN 940
                  +    ++ N
Sbjct: 281 QAEGCRKIKELDVTHN 296

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 9/110 (8%)

Query: 832 LSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPR 891
            +         +    L  L SL+   +  +      I  +  +  +  ++N ++  +  
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD- 80

Query: 892 SVSNLTFLNLLNLSYNYLSG-EIPTSTQLQSFDASCFIGNDLCGSPLSRN 940
            +S  T L  L    N L+  ++   T+L   +      N L    +S+N
Sbjct: 81  -LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCD---TNKLTKLDVSQN 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (280), Expect = 2e-25
 Identities = 65/350 (18%), Positives = 131/350 (37%), Gaps = 58/350 (16%)

Query: 473 LSEIHLANLSKLVSFDVSGNALT-LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNV 531
           + ++     +     +V  + LT L   PD +P   +  L +   +L  + P        
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLTTL---PDCLPA-HITTLVIPDNNL-TSLPALPPE--- 82

Query: 532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLS 591
           L  L++S + +  ++P       P L  L+  ++ +   +P L   +GL  + +  N L+
Sbjct: 83  LRTLEVSGNQLT-SLPVLP----PGLLELSIFSNPLT-HLPAL--PSGLCKLWIFGNQLT 134

Query: 592 GTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYL 651
            +LP++   L+ + +S+N  + S+  +        L  L   NN  +  +P        L
Sbjct: 135 -SLPVLPPGLQELSVSDNQLA-SLPALPSE-----LCKLWAYNNQLT-SLPMLPSG---L 183

Query: 652 RVLNLGNNNFTGNLPPSLGSL-----------------GSLTLLHLQKNSLSGRIPESLS 694
           + L++ +N    +LP     L                   L  L +  N L+  +P   S
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPS 241

Query: 695 NCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLG 754
               L  L + GN+ +  +P         ++ L++  N    + P  L  L+S   ++L 
Sbjct: 242 E---LKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 755 YNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSD 804
            N LS    + +  +++     Y        +   S  R       + +D
Sbjct: 293 GNPLSERTLQALREITSA--PGYSGPIIRFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (278), Expect = 2e-25
 Identities = 62/346 (17%), Positives = 122/346 (35%), Gaps = 57/346 (16%)

Query: 578 TGLRTVDLSSNNLSGTLPLISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636
            G   +++  + L+ TLP      + ++ + +N  + S+  +        L+ L +  N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT-SLPALPPE-----LRTLEVSGNQ 92

Query: 637 FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNC 696
            +  +P      L L + +    +    LP     L  L +   Q  SL    P      
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWIFGNQLTSL----PVLPPG- 142

Query: 697 NRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756
             L  L++  NQ +  +P         +  L   +N      P      + LQ L +  N
Sbjct: 143 --LQELSVSDNQLA-SLPALPS----ELCKLWAYNNQLT-SLPMLP---SGLQELSVSDN 191

Query: 757 NLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK 816
            L+ ++P   S L  +               +  L  + LP     + P     L++ G 
Sbjct: 192 QLA-SLPTLPSELYKLW------------AYNNRL--TSLP-----ALPSGLKELIVSGN 231

Query: 817 ELEY--STILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKS 874
            L         L  L  +S N  +  +P+  + L    SL++  N  + R+P+S+  + S
Sbjct: 232 RLTSLPVLPSELKEL-MVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSS 285

Query: 875 IEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQ 920
              ++   N LSE   +++  +T     +           ++ +  
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 5e-23
 Identities = 69/395 (17%), Positives = 126/395 (31%), Gaps = 78/395 (19%)

Query: 359 EVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTG 418
            VL++    L   +P       ++  + + D  ++                         
Sbjct: 43  AVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT------------------------- 74

Query: 419 CKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHL 478
                 L +     ++L+   +S N ++ L P    GL  L         L         
Sbjct: 75  -----SLPALPPELRTLE---VSGNQLTSL-PVLPPGLLELSIFSNPLTHLP-------- 117

Query: 479 ANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDIS 538
           A  S L    + GN LT    P   P   L++L +    L  + P        L  L   
Sbjct: 118 ALPSGLCKLWIFGNQLT--SLPVLPP--GLQELSVSDNQLA-SLPALPSE---LCKLWAY 169

Query: 539 RSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLIS 598
            + +  ++P         L  L+ S++++   +P L   + L  +   +N L+ +LP + 
Sbjct: 170 NNQLT-SLPMLP----SGLQELSVSDNQLA-SLPTLP--SELYKLWAYNNRLT-SLPALP 220

Query: 599 FQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGN 658
             L+ + +S N  + S+  +       EL+ L +  N  +  +P        L  L++  
Sbjct: 221 SGLKELIVSGNRLT-SLPVLP-----SELKELMVSGNRLT-SLPMLPSG---LLSLSVYR 270

Query: 659 NNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIG 718
           N  T  LP SL  L S T ++L+ N LS R  +       + S                 
Sbjct: 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPII-RFDMAGA 325

Query: 719 EKFSSMVIL-NLRSNIFDGQFPTELCFLTSLQILD 752
                   L    ++        E        +  
Sbjct: 326 SAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 6e-22
 Identities = 57/274 (20%), Positives = 88/274 (32%), Gaps = 57/274 (20%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
             H+  L +  N+    +        +L+ L +SG      +P     L +L        
Sbjct: 60  PAHITTLVIPDNN----LTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 193 SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP 252
                  L  LP  S L  L + G  L      SL       L+ L +S  QL       
Sbjct: 115 H------LPALP--SGLCKLWIFGNQLT-----SLP-VLPPGLQELSVSDNQLASLPA-- 158

Query: 253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT----- 307
               S +  L   +NQ    SL +      S L  L +  N    S+P     L      
Sbjct: 159 --LPSELCKLWAYNNQL--TSLPML----PSGLQELSVSDNQLA-SLPTLPSELYKLWAY 209

Query: 308 ------------SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS 355
                        L+ L +S N   +S+P      S L  + +  N L       L  L 
Sbjct: 210 NNRLTSLPALPSGLKELIVSGNRL-TSLP---VLPSELKELMVSGNRLTS-----LPMLP 260

Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
           + +  L +   QL  ++P S   L +   ++L  
Sbjct: 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 4e-21
 Identities = 67/380 (17%), Positives = 135/380 (35%), Gaps = 77/380 (20%)

Query: 532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLS 591
              L++  SG+  T+P         +  L   ++ +   +P L     LRT+++S N L+
Sbjct: 42  NAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQLT 94

Query: 592 GTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYL 651
            +LP++   L  + + +N  +  +  +        L  L +  N  +  +P        L
Sbjct: 95  -SLPVLPPGLLELSIFSNPLT-HLPALPSG-----LCKLWIFGNQLT-SLPVLPPG---L 143

Query: 652 RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711
           + L++ +N    +LP     L  L   + Q  SL    P   S    L  L++  NQ + 
Sbjct: 144 QELSVSDNQLA-SLPALPSELCKLWAYNNQLTSL----PMLPSG---LQELSVSDNQLA- 194

Query: 712 DIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA 771
            +PT        +  L   +N      P      + L+ L +  N L+ ++P   S L  
Sbjct: 195 SLPTLPS----ELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLT-SLPVLPSEL-- 243

Query: 772 MVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALID 831
                         ++   L  + LP                            L++L  
Sbjct: 244 ----------KELMVSGNRL--TSLPM-----------------------LPSGLLSL-S 267

Query: 832 LSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPR 891
           + +N  +  +P  +  L +  ++NL  N  S R   ++  + S     +S   +  ++  
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP--GYSGPIIRFDMAG 324

Query: 892 SVSNLTFLNLLNLSYNYLSG 911
           + +      L   + ++L  
Sbjct: 325 ASAPRETRALHLAAADWLVP 344

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 1e-20
 Identities = 82/524 (15%), Positives = 144/524 (27%), Gaps = 115/524 (21%)

Query: 232 LSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLG 291
            +   VL +    L      P    + I+ L +  N         S       L  L++ 
Sbjct: 39  NNGNAVLNVGESGLTTL---PDCLPAHITTLVIPDNNLT------SLPALPPELRTLEVS 89

Query: 292 SNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL 351
            N    S+PV    L  L           +         S L  + +  N L       L
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-----SL 136

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
             L   ++ L +S  QL   +P     LC L      + +++                  
Sbjct: 137 PVLPPGLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS----------------- 175

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471
                        L       + L    +S N ++ L P+    L  L      NN L  
Sbjct: 176 -------------LPMLPSGLQELS---VSDNQLASL-PTLPSELYKLW---AYNNRLT- 214

Query: 472 YLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF--QLEKLDLQSCHLGPTFPFWLLSQ 529
            L     + L +L    VSGN LT       +P    +L++L +    L  + P      
Sbjct: 215 SLPA-LPSGLKEL---IVSGNRLTS------LPVLPSELKELMVSGNRLT-SLPMLP--- 260

Query: 530 NVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSN 588
                                      L  L+   +++   +P +L   +   TV+L  N
Sbjct: 261 -------------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 589 NLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNF 648
            LS        ++ S    +            +  R    +     +             
Sbjct: 295 PLSERTLQALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPA 353

Query: 649 LYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQ 708
                   G  +        L  L S T   ++      +I   L+      +L  +   
Sbjct: 354 DRWH--MFGQEDNADAFSLFLDRL-SETENFIKDAGFKAQISSWLAQLAEDEALRANTFA 410

Query: 709 FSGDIPTWIGEK----FSSMVILNLRSNIFDGQFPTELCFLTSL 748
            + +  +   ++       M  + L  N   GQ+  +L  L + 
Sbjct: 411 MATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDNDLAALVAT 454

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 2e-18
 Identities = 55/288 (19%), Positives = 97/288 (33%), Gaps = 53/288 (18%)

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRL 699
           ++  C  N     VLN+G +  T  LP  L +   +T L +  N+L+  +P        L
Sbjct: 33  KMRACLNNGN--AVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPE---L 83

Query: 700 VSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
            +L + GNQ +  +P         + I +          P      + L  L +  N L+
Sbjct: 84  RTLEVSGNQLT-SLPVLPP-GLLELSIFSNPLT----HLPALP---SGLCKLWIFGNQLT 134

Query: 760 GAIPKCISNLSAMVTVDYPLGDTHPGITDC-SLYRSCLPRPRSFSDPIEKAFLVMKGKEL 818
            ++P     L  +   D  L       ++   L+     +  S                 
Sbjct: 135 -SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNN-QLTSLPMLPSG---------- 182

Query: 819 EYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVI 878
                  L  L  +S N  +  +P   ++L     L    N  +  +P        ++ +
Sbjct: 183 -------LQEL-SVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPS---GLKEL 226

Query: 879 DFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS-TQLQSFDAS 925
             S N+L   +P   S L     L +S N L+  +P   + L S    
Sbjct: 227 IVSGNRL-TSLPVLPSELK---ELMVSGNRLT-SLPMLPSGLLSLSVY 269

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.2 bits (221), Expect = 3e-18
 Identities = 66/371 (17%), Positives = 119/371 (32%), Gaps = 66/371 (17%)

Query: 206 LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLS 265
            +    L++G   L      +L     + +  L +    L    P        +  L++S
Sbjct: 39  NNGNAVLNVGESGLT-----TLPDCLPAHITTLVIPDNNLTSL-PA---LPPELRTLEVS 89

Query: 266 SNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPN 325
            NQ     ++     GL  L                     + L  L +  N   +S+P 
Sbjct: 90  GNQLTSLPVLPP---GLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL-TSLPV 138

Query: 326 WLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREI 385
                  L  +S+  N L  S+    + L      L   + QL   +P        L+E+
Sbjct: 139 ---LPPGLQELSVSDNQLA-SLPALPSEL----CKLWAYNNQLT-SLPMLPS---GLQEL 186

Query: 386 SLSDVKMSQDISEI-----LDIFSSCISD------RLESWDMTGCKIFGHLTSQIGHFKS 434
           S+SD +++   +       L  +++ ++        L+   ++G ++   L         
Sbjct: 187 SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPVLPSE--- 242

Query: 435 LDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNAL 494
           L  L +S N ++ L P    GL SL    +  N L   L E  L +LS   + ++ GN L
Sbjct: 243 LKELMVSGNRLTSL-PMLPSGLLSLS---VYRNQLT-RLPE-SLIHLSSETTVNLEGNPL 296

Query: 495 TLKVGPDWIPPFQLEKLDLQS--------CHLGPTFPFWLLSQNVLGYLDISRSGIQDTV 546
           +           ++      S                   L      +L  +R    +  
Sbjct: 297 S---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR--EGEPA 351

Query: 547 PARFWEASPQL 557
           PA  W    Q 
Sbjct: 352 PADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 4e-16
 Identities = 56/275 (20%), Positives = 91/275 (33%), Gaps = 44/275 (16%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKL 184
            +         L+            +P        L  L + G      +P        L
Sbjct: 95  SLPVLPPGLLELSIFSNPLTH----LPALPSG---LCKLWIFGNQLTS-LPVLPPG---L 143

Query: 185 QYLDLVENSELYVDNLSWLP-GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           Q L + +N       L+ LP   S L  L      L      SL     S L+ L +S  
Sbjct: 144 QELSVSDN------QLASLPALPSELCKLWAYNNQLT-----SLP-MLPSGLQELSVSDN 191

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL 303
           QL    P      S +  L   +N+    SL        S L  L +  N    S+PV  
Sbjct: 192 QLASL-PT---LPSELYKLWAYNNRL--TSLPAL----PSGLKELIVSGNRLT-SLPV-- 238

Query: 304 QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDL 363
              + L+ L +S N   +S+P      S L+ +S+  N L   +   L +LS S   ++L
Sbjct: 239 -LPSELKELMVSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLS-SETTVNL 291

Query: 364 SSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISE 398
               L  +  ++   + +    S   ++     + 
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.5 bits (183), Expect = 9e-14
 Identities = 46/253 (18%), Positives = 71/253 (28%), Gaps = 32/253 (12%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
              L  L +S N     +        +L  L          +P     L   Q L + +N
Sbjct: 140 PPGLQELSVSDNQ----LASLPALPSELCKLWAYNNQLT-SLPMLPSGL---QELSVSDN 191

Query: 193 SELYVDNLSWLP-GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPP 251
                  L+ LP   S L  L      L      SL     S L+ L +SG +L      
Sbjct: 192 ------QLASLPTLPSELYKLWAYNNRLT-----SLP-ALPSGLKELIVSGNRLTSLPV- 238

Query: 252 PIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
                S +  L +S N+        S     S L+ L +  N     +P  L +L+S   
Sbjct: 239 ---LPSELKELMVSGNRLT------SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETT 288

Query: 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQ 371
           ++L  N  +      L   ++    S        +         A               
Sbjct: 289 VNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREG 348

Query: 372 IPRSFGRLCNLRE 384
            P    R     +
Sbjct: 349 EPAPADRWHMFGQ 361

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (268), Expect = 3e-25
 Identities = 62/338 (18%), Positives = 108/338 (31%), Gaps = 45/338 (13%)

Query: 135 HLNYLDLSGNSFG---GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191
           HL  +  S          +P           L+L       +      NL  L  L L+ 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDT------ALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85

Query: 192 NSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPP 251
           N    +   +    L  L+ L L    L       L      +L+ LR+   ++      
Sbjct: 86  NKISKISPGA-FAPLVKLERLYLSKNQLK-----ELPEKMPKTLQELRVHENEITKVRKS 139

Query: 252 PIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
               ++ + V++L +N    + +      G+  L Y+ +   +   +IP GL    SL  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTE 196

Query: 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQ 371
           L L  N         L   +NL  + L  NS+     G LAN    +  L L++ +L  +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-K 254

Query: 372 IPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGH 431
           +P        ++ + L +  +S                 + S D                
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS----------------AIGSNDFCPPGYNTKKA----- 293

Query: 432 FKSLDSLFLSHNSI--SGLIPSSLGGLSSLERVVLSNN 467
             S   + L  N +    + PS+   +     V L N 
Sbjct: 294 --SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  102 bits (257), Expect = 9e-24
 Identities = 56/341 (16%), Positives = 104/341 (30%), Gaps = 78/341 (22%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH---LANLSKLVSFD 488
                 L L +N I+ +       L +L  ++L NN     +S+I     A L KL    
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----KISKISPGAFAPLVKLERLY 106

Query: 489 VSGNALTLKVGPDWIPPF---QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT 545
           +S N L        +P      L++L +    +                           
Sbjct: 107 LSKNQLKE------LPEKMPKTLQELRVHENEIT-------------------------K 135

Query: 546 VPARFWEASPQLYFLNFSNSRI-NGEIPN--LSKATGLRTVDLSSNNLSGTLPLISFQ-L 601
           V    +    Q+  +    + + +  I N        L  + ++  N++ T+P      L
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL 194

Query: 602 ESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNF 661
             + L  N  +  +      G+   L  L L  NS S        N  +LR L+L NN  
Sbjct: 195 TELHLDGNKIT-KVDAASLKGLNN-LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 662 TGNLPPSLGSLGSLTLLHLQKNSLSG------RIPESLSNCNRLVSLNMDGNQFSGDIPT 715
              +P  L     + +++L  N++S         P   +       +++  N        
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ----- 306

Query: 716 WIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756
                        ++ + F          +     + LG  
Sbjct: 307 ----------YWEIQPSTFRC--------VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 58/276 (21%), Positives = 106/276 (38%), Gaps = 33/276 (11%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
              + ++L+ L L  N      P     + KL+ L LS    K  +P ++     LQ L 
Sbjct: 71  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELR 127

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           + EN       ++ +      GL+ +  ++LG   L  +   + A   +  L  +R++  
Sbjct: 128 VHEN------EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVG 302
            +      P     S++ L L  N+    + V +    GL+NL  L L  N    ++  G
Sbjct: 182 NITTI---PQGLPPSLTELHLDGNKI---TKVDAASLKGLNNLAKLGLSFNSIS-AVDNG 234

Query: 303 -LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQG------SITGFLANLS 355
            L N   LR L L+ N     +P  LA    +  + L +N++           G+    +
Sbjct: 235 SLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 356 ASIEVLDLSSQQLEGQI--PRSFGRLCNLREISLSD 389
            S   + L S  ++     P +F  +     + L +
Sbjct: 294 -SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 62/313 (19%), Positives = 102/313 (32%), Gaps = 42/313 (13%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
            +   LDL +N     I  G  +NL +L  L L  N  +   P   A    L  + L  N
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVK-MSQDISEIL 400
            L          +  +++ L +   ++       F  L  +  + L      S  I    
Sbjct: 111 QL----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-- 164

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQI--GHFKSLDSLFLSHNSISGLIPSSLGGLSS 458
             F       L    +    I     + I  G   SL  L L  N I+ +  +SL GL++
Sbjct: 165 GAFQGMKK--LSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 459 LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHL 518
           L ++ LS N++   +    LAN   L    ++ N L  KV         ++ +       
Sbjct: 218 LAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY------ 269

Query: 519 GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRIN-GEIPN--LS 575
                   L  N     +IS  G  D  P  +         ++  ++ +   EI      
Sbjct: 270 --------LHNN-----NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 576 KATGLRTVDLSSN 588
                  V L + 
Sbjct: 317 CVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 7e-19
 Identities = 64/299 (21%), Positives = 112/299 (37%), Gaps = 32/299 (10%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD-IFSSCISDR 410
            +L     +LDL + ++       F  L NL  + L + K    IS+I    F+  +   
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK----ISKISPGAFAPLVK-- 101

Query: 411 LESWDMTGCKIFGHLTS-QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTL 469
           LE   ++  +    L        K+L  L +  N I+ +  S   GL+ +  V L  N L
Sbjct: 102 LERLYLSKNQ----LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 470 K-GYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLS 528
           K   +       + KL    ++   +T  + P  +PP  L +L L    +       L  
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNIT-TI-PQGLPP-SLTELHLDGNKITKVDAASLKG 214

Query: 529 QNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSS 587
            N L  L +S + I   V       +P L  L+ +N+++  ++P  L+    ++ V L +
Sbjct: 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 588 NNLSGTLPLISF----------QLESIDLSNNAFS-GSISPVLCNGMRGELQVLNLENN 635
           NN+S  +    F              + L +N      I P     +      + L N 
Sbjct: 273 NNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY-VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLS 591
            LD+  + I   +    ++    L+ L   N++I+ +I     +    L  + LS N L 
Sbjct: 56  LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK 113

Query: 592 GTLPLISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSF-SGEIPDCWMNFL 649
             LP    + L+ + +  N  +  +   + NG+  ++ V+ L  N   S  I +     +
Sbjct: 114 -ELPEKMPKTLQELRVHENEIT-KVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGM 170

Query: 650 Y-LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQ 708
             L  + + + N T  +P   G   SLT LHL  N ++     SL   N L  L +  N 
Sbjct: 171 KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 709 FSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
            S  +          +  L+L +N    + P  L     +Q++ L  NN+S
Sbjct: 228 IS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 63/349 (18%), Positives = 112/349 (32%), Gaps = 78/349 (22%)

Query: 580 LRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
           LR V  S   L      +      +DL NN  +  I       ++  L  L L NN  S 
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKN-LHTLILINNKISK 90

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRL 699
             P  +   + L  L L  N     LP  +    +L  L + +N ++       +  N++
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 700 VSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
           + + +  N                     + +  F G        +  L  + +   N++
Sbjct: 148 IVVELGTNPLK---------------SSGIENGAFQG--------MKKLSYIRIADTNIT 184

Query: 760 GAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYR---SCLPRPRSFSDPIEKAFLVMKGK 816
             IP+                   P +T+  L     + +    S               
Sbjct: 185 -TIPQ----------------GLPPSLTELHLDGNKITKVD-AASLKG------------ 214

Query: 817 ELEYSTILYLVALIDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSI 875
                  L  +A + LS N+ S  +      +   LR L+L+ N    ++P  +   K I
Sbjct: 215 -------LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 876 EVIDFSNNQLSE------EIPRSVSNLTFLNLLNLSYNYLS-GEIPTST 917
           +V+   NN +S         P   +     + ++L  N +   EI  ST
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 34/226 (15%), Positives = 68/226 (30%), Gaps = 33/226 (14%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFK-GMIPHQ-LGNLSKLQYLDLV 190
            + L  L +  N            + ++  + L     K   I +     + KL Y+ + 
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 191 ENSELYVDNLSWLPG--LSLLQHLDLGGVNLGK----AFDWSLAINSLSSLRVLRLSGCQ 244
           +       N++ +P      L  L L G  + K    +         L++L  L LS   
Sbjct: 180 DT------NITTIPQGLPPSLTELHLDGNKITKVDAASL------KGLNNLAKLGLSFNS 227

Query: 245 LDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-- 302
           +       + N   +  L L++N+      V   +     +  + L +N+   +I     
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKL---VKVPGGLADHKYIQVVYLHNNNIS-AIGSNDF 283

Query: 303 -----LQNLTSLRHLDLSYNDFNSSI--PNWLASFSNLVHISLRSN 341
                     S   + L  N        P+          + L + 
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 50/265 (18%), Positives = 96/265 (36%), Gaps = 40/265 (15%)

Query: 650 YLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQF 709
           +LRV+   +      +P  L       LL LQ N ++        N   L +L +  N+ 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 710 SGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNL 769
           S  I          +  L L  N    + P ++    +LQ L +  N ++       + L
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGL 144

Query: 770 SAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829
           + M+ V+  LG     +    +         +F                     +  ++ 
Sbjct: 145 NQMIVVE--LGTNP--LKSSGI------ENGAFQG-------------------MKKLSY 175

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
           I ++  N +  IP  +    +L  L+L  N  +     S+  + ++  +  S N +S   
Sbjct: 176 IRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 890 PRSVSNLTFLNLLNLSYNYLSGEIP 914
             S++N   L  L+L+ N L  ++P
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVP 256

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 9e-06
 Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 24/141 (17%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
           SL    +L  L LS NS        L +   L+ L+L+       +P  L +   +Q + 
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269

Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF 248
           L  N      N+S +                   F         +S   + L    + ++
Sbjct: 270 LHNN------NISAIG---------------SNDFCPPGYNTKKASYSGVSLFSNPVQYW 308

Query: 249 HPPPIV--NISSISVLDLSSN 267
              P     +   + + L + 
Sbjct: 309 EIQPSTFRCVYVRAAVQLGNY 329

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (259), Expect = 2e-23
 Identities = 86/443 (19%), Positives = 148/443 (33%), Gaps = 79/443 (17%)

Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLS 315
           + ++ +DLS N      L  +    L +L +L +        I     + L+SL  L L 
Sbjct: 30  AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 316 YNDFNSSIPNWLASFSNLVHISLRSNSLQGSI--TGFLANLSASIEVLDLSSQQLEGQIP 373
           YN F           +NL  ++L   +L G++    F   L+ S+E+L L    ++   P
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQP 146

Query: 374 RS-FGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHF 432
            S F  +     + L+  K+     E L  F       L    +T               
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT--------------- 191

Query: 433 KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEI--HLANLSKLVSFDVS 490
                  ++   +      +    +S+  + LS N  K  +++        +K+ S  +S
Sbjct: 192 ----LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 491 GNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
            +                +            F F  L  + +   D+S+S I   +    
Sbjct: 248 NSYNMGSS----FGHTNFKDP--------DNFTFKGLEASGVKTCDLSKSKIF-ALLKSV 294

Query: 551 WEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISF----QLESI 604
           +     L  L  + + IN +I +      T L  ++LS N L  ++    F    +LE +
Sbjct: 295 FSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVL 352

Query: 605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY-LRVLNLGNNNFTG 663
           DLS N                      L + SF G         L  L+ L L  N    
Sbjct: 353 DLSYNHIR------------------ALGDQSFLG---------LPNLKELALDTNQLK- 384

Query: 664 NLPPS-LGSLGSLTLLHLQKNSL 685
           ++P      L SL  + L  N  
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 2e-22
 Identities = 71/426 (16%), Positives = 142/426 (33%), Gaps = 69/426 (16%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
           + +  + LS   +   +      +  +  L +          + +  F GLS+L+ L L 
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLD 87

Query: 292 SNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSI--PNWLASFSNLVHISLRSNSLQGSIT 348
            N F   +  G    L +L  L L+  + + ++   N+    ++L  + LR N+++  I 
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQ 145

Query: 349 --GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSC 406
              F  N+     VLDL+  +++                 L                   
Sbjct: 146 PASFFLNMR-RFHVLDLTFNKVKSICEEDLLNFQGKHFTLL------------------- 185

Query: 407 ISDRLESWDMTGCKIFGHLTSQIGHF---KSLDSLFLSHNSISGLIPS---SLGGLSSLE 460
              RL S  +     +     + G+     S+ +L LS N     +          + ++
Sbjct: 186 ---RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 461 RVVLSNNTLKG-YLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG 519
            ++LSN+   G      +  +        +  + +                 DL    + 
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK--------------TCDLSKSKIF 288

Query: 520 --PTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LS 575
                 F   +   L  L ++++ I   +    +     L  LN S + + G I +    
Sbjct: 289 ALLKSVFSHFTD--LEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFE 344

Query: 576 KATGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLN 631
               L  +DLS N++   L   SF     L+ + L  N    S+   + + +   LQ + 
Sbjct: 345 NLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTS-LQKIW 401

Query: 632 LENNSF 637
           L  N +
Sbjct: 402 LHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (251), Expect = 2e-22
 Identities = 83/455 (18%), Positives = 154/455 (33%), Gaps = 80/455 (17%)

Query: 307 TSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI-TGFLANLSASIEVLDLSS 365
             + ++DLS N          +   +L  + +   +    I       LS S+ +L L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-SLIILKLDY 88

Query: 366 QQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHL 425
            Q       +F  L NL  ++L+             +  + +S             F  L
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCN----------LDGAVLSGN----------FFKPL 128

Query: 426 TSQIGHFKSLDSLFLSHNSISGLIPSSL-GGLSSLERVVLSNNTLKGYLSEIHLANLSKL 484
           TS       L+ L L  N+I  + P+S    +     + L+ N +K  + E  L N    
Sbjct: 129 TS-------LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGK 180

Query: 485 VSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQD 544
               +  +++TL+     +  + L              PF   S   +  LD+S +G ++
Sbjct: 181 HFTLLRLSSITLQ----DMNEYWL-------GWEKCGNPFKNTS---ITTLDLSGNGFKE 226

Query: 545 TVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESI 604
           ++  RF++A       +   S       +          + +   L  +       +++ 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS------GVKTC 280

Query: 605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN 664
           DLS +    ++   + +    +L+ L L  N  +    + +    +L  LNL  N    +
Sbjct: 281 DLSKSKIF-ALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-S 337

Query: 665 LPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSS 723
           +      +L  L +L L  N +     +S      L  L +D NQ               
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK------------- 384

Query: 724 MVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNL 758
               ++   IFD         LTSLQ + L  N  
Sbjct: 385 ----SVPDGIFDR--------LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.4 bits (248), Expect = 6e-22
 Identities = 82/456 (17%), Positives = 158/456 (34%), Gaps = 80/456 (17%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           +++ Y+DL  N     +       L  L+ L +        I N   +F  L        
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLS------- 79

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
                          S+ +L L   Q       +F  L NL  ++L+             
Sbjct: 80  ---------------SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN---------- 114

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSL-GGLSSLE 460
           +  + +S             F  LT       SL+ L L  N+I  + P+S    +    
Sbjct: 115 LDGAVLSGN----------FFKPLT-------SLEMLVLRDNNIKKIQPASFFLNMRRFH 157

Query: 461 RVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGP 520
            + L+ N +K  + E  L N        +  +++TL+     +  + L            
Sbjct: 158 VLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQ----DMNEYWL-------GWEKC 205

Query: 521 TFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGL 580
             PF   S   +  LD+S +G ++++  RF++A       +   S       +       
Sbjct: 206 GNPFKNTS---ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 581 RTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
              + +   L  +       +++ DLS +    ++   + +    +L+ L L  N  +  
Sbjct: 263 DPDNFTFKGLEAS------GVKTCDLSKSKIF-ALLKSVFSHFT-DLEQLTLAQNEINKI 314

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRL 699
             + +    +L  LNL  N    ++      +L  L +L L  N +     +S      L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373

Query: 700 VSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFD 735
             L +D NQ    +P  I ++ +S+  + L +N +D
Sbjct: 374 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 6e-22
 Identities = 83/362 (22%), Positives = 140/362 (38%), Gaps = 37/362 (10%)

Query: 184 LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           + Y+DL  NS   ++  S    L  LQ L +     G     +     LSSL +L+L   
Sbjct: 32  VNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN 89

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL 303
           Q           ++++ VL L+    D   L  ++   L++L  L L  N+ +   P   
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 304 -QNLTSLRHLDLSYNDFNSSIPNWLASF--SNLVHISLRSNSLQGSITGFLANLS----- 355
             N+     LDL++N   S     L +F   +   + L S +LQ     +L         
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 356 --ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD----------IF 403
              SI  LDLS    +  + + F       +I    +  S ++                F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 404 SSCISDRLESWDMTGCKIFGHLTSQI-GHFKSLDSLFLSHNSISGLIPSSLGGLSSLERV 462
               +  +++ D++  KIF  L   +  HF  L+ L L+ N I+ +  ++  GL+ L ++
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

Query: 463 VLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPP--F----QLEKLDLQSC 516
            LS N L   +      NL KL   D+S N +        +    F     L++L L + 
Sbjct: 329 NLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR------ALGDQSFLGLPNLKELALDTN 381

Query: 517 HL 518
            L
Sbjct: 382 QL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 7e-22
 Identities = 72/373 (19%), Positives = 131/373 (35%), Gaps = 66/373 (17%)

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
            ++ + LS NSI+ L  +S   L  L+ + +   T    +       LS L+   +  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 494 LTLKVGPDWIPP------FQLEKLDLQSCHLG----PTFPFWLLSQNVLGYLDISRSGIQ 543
                    +          LE L L  C+L         F  L+   L  L +  + I+
Sbjct: 91  FLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS--LEMLVLRDNNIK 142

Query: 544 DTVPARFWEASPQLYFLNFSNSRI----NGEIPNLSKATGLRTVDLSSNNLS-------G 592
              PA F+    + + L+ + +++      ++ N         + LSS  L        G
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLG 201

Query: 593 TLPLISF----QLESIDLSNNAFSGSISPVLCNGMRG-ELQVLNLENNSFSG-------- 639
                +      + ++DLS N F  S++    + + G ++Q L L N+   G        
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261

Query: 640 -EIPDCWMNFLY---LRVLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKNSLSGRIPESLS 694
            +  +     L    ++  +L  +     L  S+      L  L L +N ++     +  
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 695 NCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFDGQFPTELCFLT 746
               L+ LN+  N     I + + E    + +L+L  N         F G        L 
Sbjct: 321 GLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG--------LP 371

Query: 747 SLQILDLGYNNLS 759
           +L+ L L  N L 
Sbjct: 372 NLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 75/385 (19%), Positives = 132/385 (34%), Gaps = 58/385 (15%)

Query: 125 KINP-SLLHFQHLNYLDLSGNSFGGGIPR--FLGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
           ++N  S    Q L +L +   + G  I    F G +  L  L L    F  +       L
Sbjct: 44  ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-LSSLIILKLDYNQFLQLETGAFNGL 102

Query: 182 SKLQYLDLVEN--SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLR 239
           + L+ L L +       +   ++   L+ L+ L L   N+ K    +    ++    VL 
Sbjct: 103 ANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLD 160

Query: 240 LSGCQLDHFHPPPIVNISSISV--LDLSSNQF-DQNSLVLSWV-----FGLSNLVYLDLG 291
           L+  ++       ++N        L LSS    D N   L W      F  +++  LDL 
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 292 SNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL 351
            N F+ S+     +  +            + I + + S S  +  S    + +       
Sbjct: 221 GNGFKESMAKRFFDAIAG-----------TKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 352 ANLSAS-IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDR 410
             L AS ++  DLS  ++   +   F    +L +++L+  ++   I +            
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDD------------ 316

Query: 411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK 470
                      F  LT        L  L LS N +  +       L  LE + LS N ++
Sbjct: 317 ---------NAFWGLT-------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 471 GYLSEIHLANLSKLVSFDVSGNALT 495
             L +     L  L    +  N L 
Sbjct: 361 -ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.2 bits (224), Expect = 5e-19
 Identities = 76/359 (21%), Positives = 128/359 (35%), Gaps = 40/359 (11%)

Query: 570 EIPNLSKATGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRG 625
           ++P L     +  VDLS N+++  L   SF     L+ + +        I      G+  
Sbjct: 24  QVPELP--AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS- 79

Query: 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP--SLGSLGSLTLLHLQKN 683
            L +L L+ N F       +     L VL L   N  G +        L SL +L L+ N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 684 SLSGRIPESL-SNCNRLVSLNMDGNQFSGDIP--TWIGEKFSSMVILNLRSNIFDGQFPT 740
           ++    P S   N  R   L++  N+    I     +  +     +L L S         
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 741 ELCF--------LTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLY 792
            L +         TS+  LDL  N    ++ K   +  A   +   L  ++      S  
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS-LILSNSYNMGSSFG 257

Query: 793 RSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEV-TDLVAL 851
            +       F DP    F  ++   ++           DLSK+     +   V +    L
Sbjct: 258 HTN------FKDPDNFTFKGLEASGVKT---------CDLSKSKIF-ALLKSVFSHFTDL 301

Query: 852 RSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
             L L+ N  +    ++   +  +  ++ S N L     R   NL  L +L+LSYN++ 
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.7 bits (215), Expect = 8e-18
 Identities = 54/349 (15%), Positives = 112/349 (32%), Gaps = 44/349 (12%)

Query: 581 RTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
                 +  L   +P +   +  +DLS N+ +  ++    + ++ +LQ L +E  +    
Sbjct: 13  YNAICINRGLH-QVPELPAHVNYVDLSLNSIA-ELNETSFSRLQ-DLQFLKVEQQTPGLV 69

Query: 641 IPDCWMNFLY-LRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSL-SGRIPE-SLSNC 696
           I +     L  L +L L  N F   L       L +L +L L + +L    +        
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

Query: 697 NRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFDGQFPTELCFL--T 746
             L  L +  N      P           +L+L  N                    L  +
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 747 SLQILDLGYNNLSGAIPKCISNLSAMVTVDY---PLGDTHPGITDCSLYRSCLPRPRSFS 803
           S+ + D+    L           +++ T+D       ++       ++  + +      +
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 804 DPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSG 863
                +                     D     F G       +   +++ +LS +    
Sbjct: 249 SYNMGSSFGHT-------------NFKDPDNFTFKG------LEASGVKTCDLSKSKIF- 288

Query: 864 RIPDSI-GAMKSIEVIDFSNNQLSEEIPRSV-SNLTFLNLLNLSYNYLS 910
            +  S+      +E +  + N++++ I  +    LT L  LNLS N+L 
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 30/234 (12%)

Query: 131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIP---HQLGNLSKLQYL 187
           L    +   D++    G            +  L+LSG GFK  +          +K+Q L
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 188 DLVEN----SELYVDNLSWLPGLSL-------LQHLDLGGVNLGK----AFDWSLAINSL 232
            L  +    S     N       +        ++  DL    +       F         
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH------F 298

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
           + L  L L+  +++         ++ +  L+LS N       + S +F  L  L  LDL 
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL---GSIDSRMFENLDKLEVLDLS 355

Query: 292 SNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ 344
            N  + ++       L +L+ L L  N   S         ++L  I L +N   
Sbjct: 356 YNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 3e-23
 Identities = 61/265 (23%), Positives = 100/265 (37%), Gaps = 35/265 (13%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGS 292
           SS   L L   +L          ++ ++ L LSSN            FG ++L YLDL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 293 NDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIP-NWLASFSNLVHISLRSNSLQGSITGFL 351
           N    ++      L  L HLD  +++       +   S  NL+++ +     + +  G  
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 352 ANLSASIEVLDLSS-QQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDR 410
             LS S+EVL ++     E  +P  F  L NL  + LS  ++ Q            +S  
Sbjct: 147 NGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------------LSPT 193

Query: 411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK 470
                      F  L+       SL  L +SHN+   L       L+SL+ +  S N + 
Sbjct: 194 A----------FNSLS-------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 471 GYLSEIHLANL-SKLVSFDVSGNAL 494
               +  L +  S L   +++ N  
Sbjct: 237 -TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 20/239 (8%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN--SELYVDNLSWLPGLSLLQHLDLGG- 216
              L L     + +       L++L  L L  N  S     + S   G + L++LDL   
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFN 88

Query: 217 --VNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPI-VNISSISVLDLSSNQFDQNS 273
             + +   F        L  L  L      L       + +++ ++  LD+S        
Sbjct: 89  GVITMSSNFL------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---R 139

Query: 274 LVLSWVF-GLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFS 331
           +  + +F GLS+L  L +  N FQ +        L +L  LDLS        P    S S
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

Query: 332 NLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLC-NLREISLSD 389
           +L  +++  N+     T     L+ S++VLD S   +     +       +L  ++L+ 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 11/221 (4%)

Query: 129 SLLHFQHLNYLDLSGN--SFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQY 186
                  L  L LS N  SF G   +       LKYL+LS  G    +      L +L++
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 187 LDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQ-L 245
           LD   ++   +   S    L  L +LD+   +   AF+       LSSL VL+++G    
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQ 163

Query: 246 DHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQ 304
           ++F P     + +++ LDLS  Q +   L  +    LS+L  L++  N+F  S+     +
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYK 220

Query: 305 NLTSLRHLDLSYNDFNSSIPNWLASF-SNLVHISLRSNSLQ 344
            L SL+ LD S N   +S    L  F S+L  ++L  N   
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 57/281 (20%), Positives = 95/281 (33%), Gaps = 39/281 (13%)

Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ-GS 346
           +   S     S+P G+   +S   L+L  N   S         + L  +SL SN L    
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 347 ITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSC 406
                   + S++ LDLS   +   +  +F  L  L  +          + ++ +     
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN----LKQMSEF---- 119

Query: 407 ISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSN 466
                         +F  L +       L  L +SH            GLSSLE + ++ 
Sbjct: 120 -------------SVFLSLRN-------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 467 NTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPP-FQLEKLDLQSCHLG--PTFP 523
           N+ +          L  L   D+S   L  ++ P        L+ L++   +     TFP
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 524 FWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSN 564
           +  L+   L  LD S + I  +           L FLN + 
Sbjct: 219 YKCLNS--LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 8e-18
 Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 14/216 (6%)

Query: 127 NPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQL-GNLSKLQ 185
           + S      L YLDLS N     +      + +L++L+   +  K M    +  +L  L 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 186 YLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQL 245
           YLD+       V       GLS L+ L + G +  + F        L +L  L LS CQL
Sbjct: 130 YLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQL 187

Query: 246 DHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQ 304
           +   P    ++SS+ VL++S N F   SL       L++L  LD   N    +     LQ
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQ 244

Query: 305 NL-TSLRHLDLSYNDFN-----SSIPNWLASFSNLV 334
           +  +SL  L+L+ NDF       S   W+     L+
Sbjct: 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 55/290 (18%), Positives = 92/290 (31%), Gaps = 66/290 (22%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK-GYLSEIHLANLSKLVSFDVS 490
             S   L L  N +  L       L+ L ++ LS+N L             + L   D+S
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 491 GNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
            N +                                                  T+ + F
Sbjct: 87  FNGVI-------------------------------------------------TMSSNF 97

Query: 551 WEASPQLYFLNFSNSRINGEIPNLS---KATGLRTVDLSSNNLSGTLPLISFQ----LES 603
                QL  L+F +S +  ++   S       L  +D+S  +         F     LE 
Sbjct: 98  -LGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEV 154

Query: 604 IDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFL-YLRVLNLGNNNFT 662
           + ++ N+F  +  P +   +R  L  L+L       ++     N L  L+VLN+ +NNF 
Sbjct: 155 LKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 663 GNLPPSLGSLGSLTLLHLQKNSLSGRIPESL--SNCNRLVSLNMDGNQFS 710
                    L SL +L    N +     +       + L  LN+  N F+
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 7/204 (3%)

Query: 578 TGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
           +    ++L SN L  +LP   F    QL  + LS+N  S        +     L+ L+L 
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 634 NNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKNSLSGRIPES 692
            N     +   ++    L  L+  ++N       S+  SL +L  L +            
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 693 LSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILD 752
            +  + L  L M GN F  +    I  +  ++  L+L     +   PT    L+SLQ+L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 753 LGYNNLSGAIPKCISNLSAMVTVD 776
           + +NN           L+++  +D
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.5 bits (194), Expect = 8e-16
 Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 37/234 (15%)

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRIN-GEIPN--LSKATGLRTVDLSSNNL 590
            L++  + +Q ++P   ++   QL  L+ S++ ++     +      T L+ +DLS N +
Sbjct: 32  RLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 591 SGTLP---LISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN 647
             T+    L   QLE +D  ++         +   +R  L  L++ +        +   N
Sbjct: 91  I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTR-VAFNGIFN 147

Query: 648 FLY-LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMD 705
            L  L VL +  N+F  N  P     L +LT L L +  L    P + ++ + L  LNM 
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 706 GNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
            N                    +L +  +          L SLQ+LD   N++ 
Sbjct: 208 HNN-----------------FFSLDTFPYKC--------LNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 51/286 (17%), Positives = 96/286 (33%), Gaps = 60/286 (20%)

Query: 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT--GNLPPSLGSLGSLTLLHLQKN 683
               L LE+N         +     L  L+L +N  +  G    S     SL  L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 684 SLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELC 743
            +   +  +     +L  L+   +     +                  ++F         
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMS---------------EFSVFLS------- 124

Query: 744 FLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFS 803
            L +L  LD+ + +   A     + LS++  +          +   S   +    P  F+
Sbjct: 125 -LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK---------MAGNSFQEN--FLPDIFT 172

Query: 804 DPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFS 862
           +             L   T L      DLS+     ++       L +L+ LN+S+N+F 
Sbjct: 173 E-------------LRNLTFL------DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 863 GRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNL-TFLNLLNLSYN 907
                    + S++V+D+S N +     + + +  + L  LNL+ N
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 46/262 (17%), Positives = 91/262 (34%), Gaps = 42/262 (16%)

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS-GD 712
           +   +   T ++P  +    S T L L+ N L            +L  L++  N  S   
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 713 IPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCI-SNLSA 771
             +      +S+  L+L  N       +    L  L+ LD  ++NL       +  +L  
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 772 MVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL-- 829
           ++ +D         I+              F+                      L +L  
Sbjct: 128 LIYLD---------ISHTHT--RVAF-NGIFNG---------------------LSSLEV 154

Query: 830 IDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEE 888
           + ++ N+F      ++ T+L  L  L+LS        P +  ++ S++V++ S+N     
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 889 IPRSVSNLTFLNLLNLSYNYLS 910
                  L  L +L+ S N++ 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 17/180 (9%)

Query: 744 FLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFS 803
             +S   L+L  N L          L+ +  +          ++   L        +S  
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLS---------LSSNGLSFKGCC-SQSDF 75

Query: 804 DPIEKAFLVMKGKELEY--STILYLVAL--IDLSKNNFSGEIPVEV-TDLVALRSLNLSY 858
                 +L +    +    S  L L  L  +D   +N        V   L  L  L++S+
Sbjct: 76  GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 859 NHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV-SNLTFLNLLNLSYNYLSGEIPTST 917
            H           + S+EV+  + N   E     + + L  L  L+LS   L  ++  + 
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (259), Expect = 4e-23
 Identities = 59/283 (20%), Positives = 105/283 (37%), Gaps = 26/283 (9%)

Query: 437 SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTL 496
           S    +N+ISG            E+  L        +S +    +++     ++   L+ 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 497 KVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQ 556
              PD +PP Q+  L++    L  + P    S   L YLD   + +  T+P         
Sbjct: 73  -SLPDNLPP-QITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELP----AS 121

Query: 557 LYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSIS 616
           L  L+  N+++   +P L     L  ++  +N L+  LP +   LE + + NN  +  + 
Sbjct: 122 LKHLDVDNNQLT-MLPELP--ALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLT-FLP 176

Query: 617 PVLCNGMRGELQVLNLENN---SFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG 673
            +  +     L+ L++  N   S          +           N  T ++P ++ SL 
Sbjct: 177 ELPES-----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLD 230

Query: 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTW 716
               + L+ N LS RI ESLS        +     FS      
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.7 bits (243), Expect = 4e-21
 Identities = 60/334 (17%), Positives = 113/334 (33%), Gaps = 68/334 (20%)

Query: 594 LPLISFQLESIDLSNNAFSGSISPVLCNGMRG-----ELQVLNLENNSFSGEIPDCWMNF 648
           + ++     +  LS N+F  +IS    +         +  +     N     + +C +N 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59

Query: 649 LYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQ 708
                L L   N + +LP +L     +T+L + +N+L   +PE  ++   L  L+   N+
Sbjct: 60  -QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 709 FSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISN 768
            S  +P    E  +S+  L++ +N      P        L+ ++   N L+  +P+  ++
Sbjct: 112 LS-TLP----ELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTS 161

Query: 769 LSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVA 828
           L  +             + +  L  + LP                            L A
Sbjct: 162 LEVLS------------VRNNQL--TFLP-----------------------ELPESLEA 184

Query: 829 LIDLSKNNFSGEIPVEVTDLVALRS----LNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQ 884
           L D+S N     +P                    N  +  IP++I ++     I   +N 
Sbjct: 185 L-DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 885 LSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQ 918
           LS  I  S+S  T     +    Y S        
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 6e-20
 Identities = 49/272 (18%), Positives = 91/272 (33%), Gaps = 41/272 (15%)

Query: 545 TVPARFWEASPQLYFLNFSNSRING--EIPNLSKATGLRTVDLSSNNLSGTLP-LISFQL 601
              A ++ A  +           N    +           + L+  NLS +LP  +  Q+
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPPQI 82

Query: 602 ESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNF 661
             ++++ NA   S+  +  +     L+ L+  +N  S  +P+       L+ L++ NN  
Sbjct: 83  TVLEITQNALI-SLPELPAS-----LEYLDACDNRLS-TLPE---LPASLKHLDVDNNQL 132

Query: 662 TGNLPPSLGSL-----------------GSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM 704
           T  LP     L                  SL +L ++ N L+  +PE   +   L +L++
Sbjct: 133 T-MLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT-FLPELPES---LEALDV 187

Query: 705 DGNQFSGDIPTWIGEKFS---SMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGA 761
             N     +P           + +    R N      P  +  L     + L  N LS  
Sbjct: 188 STNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 762 IPKCISNLSAMVTVDYPLGDTHPGITDCSLYR 793
           I + +S  +A      P           +   
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 1e-16
 Identities = 47/234 (20%), Positives = 77/234 (32%), Gaps = 36/234 (15%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
                    + L L+  +    +P  L    ++  L ++       +P    +   L+YL
Sbjct: 53  LKECLINQFSELQLNRLNL-SSLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYL 105

Query: 188 DLVENSELYVDNLSWLPG-LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLD 246
           D  +N       LS LP   + L+HLD+    L             + L  +     QL 
Sbjct: 106 DACDN------RLSTLPELPASLKHLDVDNNQL-TMLP-----ELPALLEYINADNNQLT 153

Query: 247 HFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNL 306
              P      +S+ VL + +NQ     L         +L  LD+ +N  + S+P      
Sbjct: 154 ML-PE---LPTSLEVLSVRNNQL--TFLPEL----PESLEALDVSTNLLE-SLPAVPVRN 202

Query: 307 TSLR----HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSA 356
                         N   + IP  + S      I L  N L   I   L+  +A
Sbjct: 203 HHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.9 bits (202), Expect = 4e-16
 Identities = 51/313 (16%), Positives = 99/313 (31%), Gaps = 62/313 (19%)

Query: 174 IPHQLGN-LSKLQYLDLVENSELYVDNLSWLPGLSLLQH---LDLGGVNLGKAFDWSLAI 229
                 +   K +   L        +    L    L+     L L  +NL      SL  
Sbjct: 25  TYADYFSAWDKWEKQAL---PGENRNEAVSLLKECLINQFSELQLNRLNLS-----SLPD 76

Query: 230 NSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLD 289
           N    + VL ++   L           +S+  LD   N+   ++L        ++L +LD
Sbjct: 77  NLPPQITVLEITQNALISLPE----LPASLEYLDACDNRL--STLPEL----PASLKHLD 126

Query: 290 LGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITG 349
           + +N     +P   +    L +++   N   + +P      ++L  +S+R+N L   +  
Sbjct: 127 VDNNQLT-MLP---ELPALLEYINADNNQL-TMLPELP---TSLEVLSVRNNQLT-FLPE 177

Query: 350 FLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISD 409
              +L    E LD+S+  LE  +P    R  +  E  +                 + I+ 
Sbjct: 178 LPESL----EALDVSTNLLE-SLPAVPVRNHHSEETEI-----------FFRCRENRIT- 220

Query: 410 RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTL 469
                         H+   I       ++ L  N +S  I  SL   ++           
Sbjct: 221 --------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 470 KGYLSEIHLANLS 482
                + +  +  
Sbjct: 267 SMSDGQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 2e-12
 Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 68/276 (24%)

Query: 664 NLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSS 723
           +   +        L    +N     + E L   N+   L ++    S  +P  +      
Sbjct: 28  DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLP---PQ 81

Query: 724 MVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTH 783
           + +L +  N      P       SL+ LD   N LS  +P+  ++L             H
Sbjct: 82  ITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TLPELPASL------------KH 124

Query: 784 PGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPV 843
             + +  L  + LP                            L  + +   N  +  +P 
Sbjct: 125 LDVDNNQL--TMLP-----------------------ELPALLEYI-NADNNQLT-MLPE 157

Query: 844 EVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS---EEIPRSVSNLTFLN 900
                 +L  L++  N  +  +P+      S+E +D S N L        R+  +     
Sbjct: 158 L---PTSLEVLSVRNNQLT-FLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEI 210

Query: 901 LLNLSYNYLSGEIPTS----TQLQSFDASCFIGNDL 932
                 N ++  IP +        +        N L
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILE---DNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 45/235 (19%), Positives = 75/235 (31%), Gaps = 56/235 (23%)

Query: 694 SNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTEL--CFLTSLQIL 751
            N N  +S N   N  S          +       L     + +  + L  C +     L
Sbjct: 7   INNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSEL 64

Query: 752 DLGYNNLSGAIPKCI-SNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAF 810
            L   NLS ++P  +   +            T   IT  +L    LP             
Sbjct: 65  QLNRLNLS-SLPDNLPPQI------------TVLEITQNAL--ISLP------------- 96

Query: 811 LVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIG 870
                          L  L D   N  S  +P       +L+ L++  N  +  +P+   
Sbjct: 97  ----------ELPASLEYL-DACDNRLS-TLPEL---PASLKHLDVDNNQLT-MLPELPA 140

Query: 871 AMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDAS 925
               +E I+  NNQL+  +P   ++L  L++ N    +L         L++ D S
Sbjct: 141 ---LLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPELP---ESLEALDVS 188

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 57/269 (21%), Positives = 88/269 (32%), Gaps = 21/269 (7%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQ---LGNLSKLQYLDL 189
              L  +D   +         + S+  LK L +  A     I      +  +S LQ L L
Sbjct: 46  EYLLKRVDTEADLGQ--FTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 190 VENSELYVDNLSWLPGLSL-LQHLDLGGVNLGKAFDWSLAINSLS--SLRVLRLSGCQLD 246
                        L      L  L+L  V+      W   +       L+VL ++     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 247 HFHPPPIVNISSISVLDLSSNQFD-----QNSLVLSWVFGLSNLVYLDLGSNDFQGSIPV 301
           +F    +    ++S LDLS N         ++L       L  L   + G     G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 302 GLQNLTSLRHLDLSYNDFNSSIPNWLASF-SNLVHISLRSNSLQGSITGFLANLSASIEV 360
                  L+ LDLS+N    +       + S L  ++L    L          L A + V
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLPAKLSV 278

Query: 361 LDLSSQQLEGQIPRSFGRLCNLREISLSD 389
           LDLS  +L+   P S   L  +  +SL  
Sbjct: 279 LDLSYNRLDR-NP-SPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 44/223 (19%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 556 QLYFLNFSNSRINGEIPNLSKA----TGLRTVDLSSNNLSGTLP-----LISFQLESIDL 606
            L  L    +RI   I   +      +GL+ + L +  ++GT P          L  ++L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 607 SNNAFSG--SISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN 664
            N +++   +    L   ++  L+VL++          +    F  L  L+L +N   G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 665 L-------PPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWI 717
                   P    +L  L L +    + SG      +   +L  L++  N          
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 718 GEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
            +  S +  LNL                  L +LDL YN L  
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.6 bits (217), Expect = 8e-19
 Identities = 48/282 (17%), Positives = 96/282 (34%), Gaps = 22/282 (7%)

Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL-GKAFDWSLAINSLSSLR 236
            G    L+YL    ++E  +   + +     L+ L +    +  +    +L +  +S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 237 VLRLSGCQLDHFHPPPIVNI--SSISVLDLSSNQFDQNSLVLSWVFGLS--NLVYLDLGS 292
            L L   ++    PPP++      +++L+L +  +      L+ +       L  L +  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 293 NDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLA----SFSNLVHISLRSNSLQ--GS 346
                     ++   +L  LDLS N          A     F  L  ++LR+  ++    
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 347 ITGFLANLSASIEVLDLSSQQLEGQIPR-SFGRLCNLREISLSDVKMSQDISEILDIFSS 405
           +   LA     ++ LDLS   L       S      L  ++LS           L     
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS--------FTGLKQVPK 270

Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISG 447
            +  +L   D++  ++             + +L L  N    
Sbjct: 271 GLPAKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 1e-16
 Identities = 55/307 (17%), Positives = 99/307 (32%), Gaps = 55/307 (17%)

Query: 224 DWSLAINSLSSLRV-LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGL 282
           DWS A N L +  V L   G  L++                L     + +    + +   
Sbjct: 23  DWSSAFNCLGAADVELYGGGRSLEYL---------------LKRVDTEADLGQFTDIIKS 67

Query: 283 SNLVYLDLGSNDFQGSIPVG---LQNLTSLRHLDLSYNDFNSSIPNWLASFS--NLVHIS 337
            +L  L + +      I  G   +  ++ L+ L L   +   + P  L   +  +L  ++
Sbjct: 68  LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127

Query: 338 LRSNSLQG---SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQ 394
           LR+ S       +      L   ++VL ++                 L  + LSD     
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 395 DISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHN---SISGLIPS 451
           +   I  +                             F +L  L L +    + SG+  +
Sbjct: 188 ERGLISALCP-------------------------LKFPTLQVLALRNAGMETPSGVCSA 222

Query: 452 SLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKL 511
                  L+ + LS+N+L+           S+L S ++S   L     P  +P  +L  L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLPA-KLSVL 279

Query: 512 DLQSCHL 518
           DL    L
Sbjct: 280 DLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 1e-16
 Identities = 65/369 (17%), Positives = 109/369 (29%), Gaps = 64/369 (17%)

Query: 547 PARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDL 606
                E   +    NFS+ +   +  +     G   V+L     S    L     E+   
Sbjct: 2   DPEPCELDEESCSCNFSDPKP--DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLG 59

Query: 607 SNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFL---YLRVLNLGNNNFTG 663
                  S+S          L+ L +        I    +  L    L+ L L N   TG
Sbjct: 60  QFTDIIKSLS----------LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109

Query: 664 NLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSS 723
             PP L       L  L           +L N +         + +  ++  W+      
Sbjct: 110 TAPPPLLEATGPDLNIL-----------NLRNVS-----WATRDAWLAELQQWLKP---G 150

Query: 724 MVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTH 783
           + +L++           ++    +L  LDL  N   G               +  L    
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG---------------ERGLISAL 195

Query: 784 PGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPV 843
             +   +L    L      +     + L     +L+          +DLS N+       
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG---------LDLSHNSLRDAAGA 246

Query: 844 EV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLL 902
                   L SLNLS+     ++P  + A   + V+D S N+L    P S   L  +  L
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRLD-RNP-SPDELPQVGNL 301

Query: 903 NLSYNYLSG 911
           +L  N    
Sbjct: 302 SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 49/320 (15%), Positives = 96/320 (30%), Gaps = 59/320 (18%)

Query: 305 NLTSLRHLDLSYN-DFNSSIPNWLASFSNLVHISLRSNSLQG-SITGFLANLSAS-IEVL 361
              SL +L    + + +      +    +L  +++R+  +    + G L  L  S ++ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 362 DLSSQQLEGQIPRSFGRLC--NLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGC 419
            L + ++ G  P         +L  ++L +V  +   + + ++                 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL------------- 147

Query: 420 KIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH-- 477
                          L  L ++           +    +L  + LS+N   G    I   
Sbjct: 148 ------------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 478 -LANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLD 536
                  L    +    +                                 ++  L  LD
Sbjct: 196 CPLKFPTLQVLALRNAGME---------------------TPSGVCSALAAARVQLQGLD 234

Query: 537 ISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPL 596
           +S + ++D   A   +   QL  LN S + +      L     L  +DLS N L    P 
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLD-RNPS 291

Query: 597 ISF--QLESIDLSNNAFSGS 614
                Q+ ++ L  N F  S
Sbjct: 292 PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 44/188 (23%), Positives = 59/188 (31%), Gaps = 40/188 (21%)

Query: 118 ERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIP----RFLGSMGKLKYLNLSGAGFK-- 171
            ++         +  F  L+ LDLS N   G               L+ L L  AG +  
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 172 -GMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAIN 230
            G+         +LQ LDL  N      +L    G                         
Sbjct: 217 SGVCSALAAARVQLQGLDLSHN------SLRDAAGAPSCDW------------------- 251

Query: 231 SLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDL 290
             S L  L LS   L    P  +   + +SVLDLS N+ D+N         L  +  L L
Sbjct: 252 -PSQLNSLNLSFTGLKQV-PKGLP--AKLSVLDLSYNRLDRNPSPD----ELPQVGNLSL 303

Query: 291 GSNDFQGS 298
             N F  S
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 851 LRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI-------PRSVSNLTFLNLLN 903
           L+ L+++  H      + +    ++  +D S+N    E        P     L  L L N
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 904 LSYNYLSGEIPTS----TQLQSFDASCFIGNDLCGSPLSRNCT 942
                 SG          QLQ  D S    N L  +  + +C 
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLS---HNSLRDAAGAPSCD 250

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 47/215 (21%), Positives = 75/215 (34%), Gaps = 16/215 (7%)

Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSEL 195
              + L GN           +   L  L L       +       L+ L+ LDL +N++L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 196 YVDNLSWLPGLSLLQHLDLGGVNL----GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPP 251
              + +   GL  L  L L    L       F        L++L+ L L    L      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR------GLAALQYLYLQDNALQALPDD 147

Query: 252 PIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVG-LQNLTSL 309
              ++ +++ L L  N+    S V    F GL +L  L L  N     +     ++L  L
Sbjct: 148 TFRDLGNLTHLFLHGNRI---SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203

Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ 344
             L L  N+ ++     LA    L ++ L  N   
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 37/238 (15%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
           ++ + + L G ++ H          ++++L L SN     + + +  F GL+ L  LDL 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL---ARIDAAAFTGLALLEQLDLS 88

Query: 292 SNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIP-NWLASFSNLVHISLRSNSLQGSITG 349
            N    S+       L  L  L L        +        + L ++ L+ N+LQ     
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 350 FLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISD 409
              +L  ++  L L   ++     R+F  L +L  + L   +++  +             
Sbjct: 148 TFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHP----------- 194

Query: 410 RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
                       F  L         L +L+L  N++S L   +L  L +L+ + L++N
Sbjct: 195 ----------HAFRDLG-------RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 53/241 (21%), Positives = 81/241 (33%), Gaps = 38/241 (15%)

Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLS 315
           ++   + L  N+   + +  +      NL  L L SN     I       L  L  LDLS
Sbjct: 32  AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88

Query: 316 YNDFNSSIP-NWLASFSNLVHISLRSNSLQGSI-TGFLANLSASIEVLDLSSQQLEGQIP 373
            N    S+          L  + L    LQ  +  G    L+ +++ L L    L+    
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA-ALQYLYLQDNALQALPD 146

Query: 374 RSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFK 433
            +F  L NL  + L   +    IS + +                  + F  L        
Sbjct: 147 DTFRDLGNLTHLFLHGNR----ISSVPE------------------RAFRGLH------- 177

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
           SLD L L  N ++ + P +   L  L  + L  N L   L    LA L  L    ++ N 
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236

Query: 494 L 494
            
Sbjct: 237 W 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 47/197 (23%), Positives = 73/197 (37%), Gaps = 29/197 (14%)

Query: 578 TGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
              + + L  N +S  +P  SF     L  + L +N  +  I      G+   L+ L+L 
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLA-LLEQLDLS 88

Query: 634 NNSFSGEIP-DCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPE 691
           +N+    +    +     L  L+L        L P     L +L  L+LQ N+L   +P+
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD 146

Query: 692 -SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFDGQFPTEL 742
            +  +   L  L + GN+ S  +P        S+  L L  N         F        
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD------ 199

Query: 743 CFLTSLQILDLGYNNLS 759
             L  L  L L  NNLS
Sbjct: 200 --LGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 15/210 (7%)

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLS 591
            + +  + I   VPA  + A   L  L   ++ +   I     +    L  +DLS N   
Sbjct: 36  RIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 592 GTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN 647
            ++   +F    +L ++ L        + P L  G+   LQ L L++N+    +PD    
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL-AALQYLYLQDNALQ-ALPDDTFR 150

Query: 648 FLY-LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMD 705
            L  L  L L  N  + ++P  +   L SL  L L +N ++   P +  +  RL++L + 
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 706 GNQFSGDIPTWIGEKFSSMVILNLRSNIFD 735
            N  S  +PT       ++  L L  N + 
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 57/265 (21%), Positives = 92/265 (34%), Gaps = 28/265 (10%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
             +   +FL  N IS +  +S     +L  + L +N L   +       L+ L   D+S 
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 492 NALTLKVGPDWIPPF-QLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDTVPA 548
           NA    V P       +L  L L  C L       F  L+   L YL +  + +Q  +P 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA--LQYLYLQDNALQ-ALPD 146

Query: 549 RFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISF----QLE 602
             +     L  L    +RI+  +P         L  + L  N ++  +   +F    +L 
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204

Query: 603 SIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT 662
           ++ L  N  S ++       +R  LQ L L +N +      C      L          +
Sbjct: 205 TLYLFANNLS-ALPTEALAPLR-ALQYLRLNDNPW-----VCDCRARPLWAWLQKFRGSS 257

Query: 663 GNL----PPSLG--SLGSLTLLHLQ 681
             +    P  L    L  L    LQ
Sbjct: 258 SEVPCSLPQRLAGRDLKRLAANDLQ 282

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 37/193 (19%), Positives = 58/193 (30%), Gaps = 32/193 (16%)

Query: 581 RTVDLSSNNLSGTLPL-ISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
            T       L   +P+ I    + I L  N  S  +        R  L +L L +N  + 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAASQRIFLHGNRIS-HVPAASFRACRN-LTILWLHSNVLAR 70

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPE-SLSNCN 697
                +     L  L+L +N    ++ P+    LG L  LHL +  L   +         
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129

Query: 698 RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN 757
            L  L +  N                  +  L  + F          L +L  L L  N 
Sbjct: 130 ALQYLYLQDNA-----------------LQALPDDTFRD--------LGNLTHLFLHGNR 164

Query: 758 LSGAIPKCISNLS 770
           +S    +    L 
Sbjct: 165 ISSVPERAFRGLH 177

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 49/274 (17%), Positives = 87/274 (31%), Gaps = 78/274 (28%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
             + A+ + + L   ++      SF    NL                             
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTI--------------------------- 60

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471
                                     L+L  N ++ +  ++  GL+ LE++ LS+N    
Sbjct: 61  --------------------------LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 472 YLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPP------FQLEKLDLQSCHLG--PTFP 523
            +       L +L +  +    L        + P        L+ L LQ   L   P   
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQE------LGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 524 FWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLR 581
           F  L    L +L +  + I  +VP R +     L  L    +R+   +          L 
Sbjct: 149 FRDLGN--LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204

Query: 582 TVDLSSNNLSGTLPLISFQ----LESIDLSNNAF 611
           T+ L +NNLS  LP  +      L+ + L++N +
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 43/264 (16%), Positives = 69/264 (26%), Gaps = 87/264 (32%)

Query: 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
            + + L  N  +     S  +  +LT+L L  N L+     + +    L  L++  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
             +                    F G        L  L  L L            +  L 
Sbjct: 94  RSVD----------------PATFHG--------LGRLHTLHLDRCG--------LQELG 121

Query: 771 AMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL- 829
                                       P  F                       L AL 
Sbjct: 122 ----------------------------PGLFRG---------------------LAALQ 132

Query: 830 -IDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE 887
            + L  N     +P +   DL  L  L L  N  S     +   + S++ +    N+++ 
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA- 190

Query: 888 EIPRSV-SNLTFLNLLNLSYNYLS 910
            +      +L  L  L L  N LS
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 41/207 (19%), Positives = 65/207 (31%), Gaps = 60/207 (28%)

Query: 134 QHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
             L+ L L         P     +  L+YL L     + +      +L  L +L L  N 
Sbjct: 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN- 163

Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPI 253
                 +S +P                +AF        L SL  L L   ++ H HP   
Sbjct: 164 -----RISSVP---------------ERAFR------GLHSLDRLLLHQNRVAHVHP--- 194

Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHL 312
                        + F            L  L+ L L +N+   ++P   L  L +L++L
Sbjct: 195 -------------HAFR----------DLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230

Query: 313 DLSYNDFN-----SSIPNWLASFSNLV 334
            L+ N +        +  WL  F    
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGSS 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 8e-21
 Identities = 55/222 (24%), Positives = 81/222 (36%), Gaps = 18/222 (8%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
           S  H +HL  L LS N            +  L  L L       +       LSKL+ L 
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           L  N       +  +P      +  L+ LDLG +          A   LS+LR L L+ C
Sbjct: 143 LRNN------PIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC 195

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG- 302
            L     P +  +  +  LDLS N     ++      GL +L  L +  +  Q  I    
Sbjct: 196 NLREI--PNLTPLIKLDELDLSGNHLS--AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA 250

Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ 344
             NL SL  ++L++N+      +      +L  I L  N   
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 23/254 (9%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           +N   L+L  N  Q  I V   ++L  L  L LS N   +         +NL  + L  N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
            L     G    LS  ++ L L +  +E     +F R+ +LR + L ++K    ISE   
Sbjct: 123 RLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--G 179

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSL---FLSHNSISGLIPSSLGGLSS 458
            F    +  L   ++  C +      +I +   L  L    LS N +S + P S  GL  
Sbjct: 180 AFEGLSN--LRYLNLAMCNL-----REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 459 LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQS--- 515
           L+++ +  + ++  +      NL  LV  +++ N LTL     + P   LE++ L     
Sbjct: 233 LQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

Query: 516 ---CHLGPTFPFWL 526
              C +     +W+
Sbjct: 292 NCNCDILW-LSWWI 304

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 31/242 (12%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLP-----GLSLLQHLDL 214
            + LNL     + +  +   +L  L+ L L  N      ++  +      GL+ L  L+L
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN------HIRTIEIGAFNGLANLNTLEL 119

Query: 215 GGVNL----GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFD 270
               L      AF        LS L+ L L    ++         I S+  LDL      
Sbjct: 120 FDNRLTTIPNGAFV------YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL--- 170

Query: 271 QNSL-VLSW-VF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWL 327
              L  +S   F GLSNL YL+L   + +  IP  L  L  L  LDLS N  ++  P   
Sbjct: 171 -KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 328 ASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISL 387
               +L  + +  + +Q        NL  S+  ++L+   L       F  L +L  I L
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 388 SD 389
             
Sbjct: 287 HH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.5 bits (230), Expect = 8e-20
 Identities = 60/265 (22%), Positives = 101/265 (38%), Gaps = 47/265 (17%)

Query: 209 LQHLDLGGVNL----GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDL 264
            + L+L    +      +F        L  L +L+LS   +          +++++ L+L
Sbjct: 66  TRLLNLHENQIQIIKVNSFK------HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 265 SSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSI 323
             N+    ++       LS L  L L +N  + SIP      + SLR LDL      S I
Sbjct: 120 FDNRL--TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 324 P-NWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNL 382
                   SNL +++L   +L+  I      L   ++ LDLS   L    P SF  L +L
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPNL-TPLI-KLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 383 REISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH 442
           +++ +   ++   I                         F +L        SL  + L+H
Sbjct: 234 QKLWMIQSQIQV-IER---------------------NAFDNLQ-------SLVEINLAH 264

Query: 443 NSISGLIPSSLGGLSSLERVVLSNN 467
           N+++ L       L  LER+ L +N
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 58/265 (21%), Positives = 92/265 (34%), Gaps = 40/265 (15%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
           ++ R+L L   Q+         ++  + +L LS N       +    F GL+NL  L+L 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI---RTIEIGAFNGLANLNTLELF 120

Query: 292 SNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL-RSNSLQGSITG 349
            N    +IP G    L+ L+ L L  N   S          +L  + L     L     G
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 350 FLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISD 409
               LS ++  L+L+   L  +IP +   L  L E+ LS       +S I          
Sbjct: 180 AFEGLS-NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS----GNHLSAIRP-------- 224

Query: 410 RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTL 469
                       F  L         L  L++  + I  +  ++   L SL  + L++N L
Sbjct: 225 ----------GSFQGLM-------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 470 KGYLSEIHLANLSKLVSFDVSGNAL 494
              L       L  L    +  N  
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 33/258 (12%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
             +   L L  N I  +  +S   L  LE + LS N ++  +       L+ L + ++  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 492 NALTLKVGPDWIPPF-QLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDTVPA 548
           N LT  +         +L++L L++  +   P++ F  +    L  LD+        +  
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS--LRRLDLGELKRLSYISE 178

Query: 549 RFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSN 608
             +E    L +LN +   +  EIPNL+    L  +DLS N+LS              +  
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSA-------------IRP 224

Query: 609 NAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPS 668
            +F G +           LQ L +  +       + + N   L  +NL +NN T  LP  
Sbjct: 225 GSFQGLMH----------LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273

Query: 669 -LGSLGSLTLLHLQKNSL 685
               L  L  +HL  N  
Sbjct: 274 LFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 53/241 (21%), Positives = 90/241 (37%), Gaps = 43/241 (17%)

Query: 544 DTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISFQ- 600
             VP      S     LN   ++I   I          L  + LS N++  T+ + +F  
Sbjct: 56  REVPDGI---STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNG 110

Query: 601 ---LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY-LRVLNL 656
              L +++L +N  + +I       +  +L+ L L NN     IP    N +  LR L+L
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLS-KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 657 GNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPT 715
           G       +   +   L +L  L+L   +L   IP +L+   +L  L++ GN  S     
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS----- 220

Query: 716 WIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTV 775
                        +R   F G        L  LQ L +  + +         NL ++V +
Sbjct: 221 ------------AIRPGSFQG--------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 776 D 776
           +
Sbjct: 261 N 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 8e-15
 Identities = 50/262 (19%), Positives = 92/262 (35%), Gaps = 61/262 (23%)

Query: 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
            R+LNL  N        S   L  L +L L +N +      + +    L +L +  N+  
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-- 123

Query: 711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
                          +  + +  F          L+ L+ L L  N +        + + 
Sbjct: 124 ---------------LTTIPNGAFVY--------LSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 771 AMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL- 829
           ++  +D  LG+    ++        +    +F                       L  L 
Sbjct: 161 SLRRLD--LGEL-KRLSY-------IS-EGAFEG---------------------LSNLR 188

Query: 830 -IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEE 888
            ++L+  N   EIP  +T L+ L  L+LS NH S   P S   +  ++ +    +Q+   
Sbjct: 189 YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

Query: 889 IPRSVSNLTFLNLLNLSYNYLS 910
              +  NL  L  +NL++N L+
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 62/314 (19%), Positives = 104/314 (33%), Gaps = 76/314 (24%)

Query: 308 SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQ 367
               +     +    +P+ +   +N   ++L  N +Q        +L   +E+L LS   
Sbjct: 44  QFSKVICVRKNL-REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNH 99

Query: 368 LEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS 427
           +      +F  L NL  + L D +++             I +            F +L+ 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTT------------IPNGA----------FVYLSK 137

Query: 428 QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSF 487
                  L  L+L +N I  +   +   + SL R+ L       Y+SE     LS L   
Sbjct: 138 -------LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 488 DVSGNALTLKVGPDWIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQ 543
           +++   L        IP      +L++LDL   HL        +       L        
Sbjct: 191 NLAMCNLRE------IPNLTPLIKLDELDLSGNHL------SAIRPGSFQGL-------- 230

Query: 544 DTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISFQ- 600
                        L  L    S+I   I          L  ++L+ NNL+  LP   F  
Sbjct: 231 -----------MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTP 277

Query: 601 ---LESIDLSNNAF 611
              LE I L +N +
Sbjct: 278 LHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 48/257 (18%), Positives = 93/257 (36%), Gaps = 30/257 (11%)

Query: 666 PPSLGSLGSLTLLHLQKNSLSGRIPESL---SNC---NRLVSLNMDGNQFSGDIPTWIGE 719
            P + +L  ++LL +           +    S C   N+   +         ++P  I  
Sbjct: 6   SPGMPALLLVSLLSVLLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLR-EVPDGI-- 62

Query: 720 KFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPL 779
             ++  +LNL  N            L  L+IL L  N++        + L+ + T++   
Sbjct: 63  -STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE--- 118

Query: 780 GDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKG---KELEYSTILYLVAL--IDLSK 834
                 + D  L  + +P   +F    +   L ++    + +       + +L  +DL +
Sbjct: 119 ------LFDNRL--TTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 835 NNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV 893
                 I       L  LR LNL+  +    IP+ +  +  ++ +D S N LS   P S 
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 894 SNLTFLNLLNLSYNYLS 910
             L  L  L +  + + 
Sbjct: 228 QGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
           P+L     L+ LDLSGN      P     +  L+ L +  +  + +  +   NL  L  +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 188 DLVENSELYVDNLSWLP-----GLSLLQHLDLGG 216
           +L  N      NL+ LP      L  L+ + L  
Sbjct: 261 NLAHN------NLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 830 IDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEE 888
           ++L +N     I V     L  L  L LS NH       +   + ++  ++  +N+L+  
Sbjct: 69  LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-T 126

Query: 889 IPRSV-SNLTFLNLLNLSYNYLSGEIPTST 917
           IP      L+ L  L L  N +   IP+  
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 8e-21
 Identities = 60/274 (21%), Positives = 95/274 (34%), Gaps = 32/274 (11%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
                QHL  L L  N       +    + KL+ L +S       IP  L   S L  L 
Sbjct: 73  DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELR 129

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           + +N       +  +P     GL  +  +++GG  L  +     A + L  L  LR+S  
Sbjct: 130 IHDN------RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVG 302
           +L      P     +++ L L  N+      +        S L  L LG N  +  I  G
Sbjct: 183 KLTGI---PKDLPETLNELHLDHNKI---QAIELEDLLRYSKLYRLGLGHNQIR-MIENG 235

Query: 303 -LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ----GSITGFLANLS-A 356
            L  L +LR L L  N   S +P  L     L  + L +N++              +  A
Sbjct: 236 SLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 357 SIEVLDLSSQQLEGQI--PRSFGRLCNLREISLS 388
               + L +  +      P +F  + +   I   
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 54/299 (18%), Positives = 98/299 (32%), Gaps = 36/299 (12%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
            +   LDL +ND    +     + L  L  L L  N  +       +    L  + +  N
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
            L         NL +S+  L +   ++       F  L N+  I +    +     E   
Sbjct: 113 HL----VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-G 167

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQI--GHFKSLDSLFLSHNSISGLIPSSLGGLSSL 459
            F      +L    ++  K+     + I     ++L+ L L HN I  +    L   S L
Sbjct: 168 AFDGL---KLNYLRISEAKL-----TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 460 ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQS--- 515
            R+ L +N ++  +    L+ L  L    +  N L+ +V P  +P    L+ + L +   
Sbjct: 220 YRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RV-PAGLPDLKLLQVVYLHTNNI 276

Query: 516 --------CHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSR 566
                   C +G        +   L    +    +Q                + F N +
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV----TDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 60/338 (17%), Positives = 102/338 (30%), Gaps = 73/338 (21%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH---LANLSKLVSFD 488
                 L L +N IS L      GL  L  +VL NN     +S+IH    + L KL    
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----KISKIHEKAFSPLRKLQKLY 108

Query: 489 VSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPA 548
           +S N L        IPP     L                       L I  + I+  VP 
Sbjct: 109 ISKNHLVE------IPPNLPSSL---------------------VELRIHDNRIR-KVPK 140

Query: 549 RFWEASPQLYFLNFSNSRINGEI--PNLSKATGLRTVDLSSNNLSGTLPLISFQ-LESID 605
             +     +  +    + +      P       L  + +S   L+  +P    + L  + 
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELH 199

Query: 606 LSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNL 665
           L +N    +I          +L  L L +N               LR L+L NN  +  +
Sbjct: 200 LDHNKIQ-AIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 666 PPSLGSLGSLTLLHLQKNSLSGRIPES-------LSNCNRLVSLNMDGNQFSGDIPTWIG 718
           P  L  L  L +++L  N+++ ++  +                +++  N           
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP-------- 307

Query: 719 EKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756
                     ++   F          +T    +  G  
Sbjct: 308 -------YWEVQPATFRC--------VTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 57/343 (16%), Positives = 109/343 (31%), Gaps = 61/343 (17%)

Query: 308 SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQ 367
            LR +  S      ++P  +    +   + L++N +          L   +  L L + +
Sbjct: 34  HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNK 89

Query: 368 LEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS 427
           +     ++F  L  L+++ +S       + EI                            
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNH----LVEI---------------------------- 117

Query: 428 QIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK-GYLSEIHLANLSKLVS 486
                 SL  L +  N I  +      GL ++  + +  N L+           L KL  
Sbjct: 118 PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176

Query: 487 FDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQD 544
             +S   LT  +  D   P  L +L L    +           S+  L  L +  + I+ 
Sbjct: 177 LRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSK--LYRLGLGHNQIR- 230

Query: 545 TVPARFWEASPQLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSNNLSGTLPLISF---- 599
            +        P L  L+  N++++  +P  L     L+ V L +NN++  + +  F    
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVG 288

Query: 600 ------QLESIDLSNNAFS-GSISPVLCNGMRGELQVLNLENN 635
                     I L NN      + P     +  +   +   N 
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVT-DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 38/257 (14%)

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLS 591
            LD+  + I   +    ++    LY L   N++I+ +I     S    L+ + +S N+L 
Sbjct: 58  LLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV 115

Query: 592 GTLPLISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSF-SGEIPDCWMNFL 649
             +P      L  + + +N     +   + +G+R  +  + +  N   +        + L
Sbjct: 116 -EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 650 YLRVLNLGNNNFTG---NLPPSLGSL------------------GSLTLLHLQKNSLSGR 688
            L  L +     TG   +LP +L  L                    L  L L  N +   
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 689 IPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN----IFDGQFP--TEL 742
              SLS    L  L++D N+ S  +P  +      + ++ L +N    +    F      
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 743 CFLTSLQILDLGYNNLS 759
                   + L  N + 
Sbjct: 291 VKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 43/273 (15%), Positives = 88/273 (32%), Gaps = 36/273 (13%)

Query: 228 AINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVY 287
               L  L  L L   ++   H      +  +  L +S N       +   +   S+LV 
Sbjct: 73  DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL---VEIPPNLP--SSLVE 127

Query: 288 LDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDF-NSSIPNWLASFSNLVHISLRSNSLQG 345
           L +  N  +  +P G    L ++  +++  N   NS           L ++ +    L  
Sbjct: 128 LRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-- 184

Query: 346 SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS 405
             TG   +L  ++  L L   +++        R   L  + L   ++   I       S 
Sbjct: 185 --TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIEN--GSLSF 239

Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL------SSL 459
             +  L    +   K+   + + +   K L  ++L  N+I+ +  +    +      +  
Sbjct: 240 LPT--LRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 460 ERVVLSNNTLKGY------------LSEIHLAN 480
             + L NN +  +               I   N
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 62/350 (17%), Positives = 104/350 (29%), Gaps = 81/350 (23%)

Query: 580 LRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
           LR V  S   L      IS     +DL NN  S  +      G++  L  L L NN  S 
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQH-LYALVLVNNKISK 92

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRL 699
                +     L+ L +  N+    +PP+L    SL  L +  N +        S    +
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 700 VSLNMDGNQFSGDIPTWIGEK-FS--SMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756
             + M GN       +      F    +  L +         P +L    +L  L L +N
Sbjct: 150 NCIEMGGNPLE---NSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 757 NLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK 816
                    I  +                                               
Sbjct: 204 K--------IQAIE----------------------------LEDLLR------------ 215

Query: 817 ELEYSTILYLVALIDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSIGAMKSI 875
                     +  + L  N     I     + L  LR L+L  N  S R+P  +  +K +
Sbjct: 216 -------YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266

Query: 876 EVIDFSNNQLSEEIPRSV-------SNLTFLNLLNLSYNYLS-GEIPTST 917
           +V+    N +++ +  +            + N ++L  N +   E+  +T
Sbjct: 267 QVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 55/300 (18%), Positives = 102/300 (34%), Gaps = 58/300 (19%)

Query: 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNS 684
            L+V+   +      +P          +L+L NN+ +  L       L  L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 685 LSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN----IFDGQFPT 740
           +S    ++ S   +L  L +  N    +IP       SS+V L +  N    +  G F  
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLV-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSG 145

Query: 741 ELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPR 800
               L ++  +++G N                                  L  S    P 
Sbjct: 146 ----LRNMNCIEMGGN---------------------------------PLENSGFE-PG 167

Query: 801 SFSDPIEKAFLVMKGKELEYSTILYLVAL--IDLSKNNFSGEIPVEV-TDLVALRSLNLS 857
           +F   ++  +L +   +L          L  + L  N     I +E       L  L L 
Sbjct: 168 AFDG-LKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 858 YNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTST 917
           +N        S+  + ++  +   NN+LS  +P  + +L  L ++ L  N ++ ++  + 
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 23/179 (12%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
             P       LNYL +S      GIP+       L  L+L     + +    L   SKL 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKL-TGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 186 YLDLVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRL 240
            L L  N       +  +       L  L+ L L    L +       +  L  L+V+ L
Sbjct: 221 RLGLGHN------QIRMIENGSLSFLPTLRELHLDNNKLSRV---PAGLPDLKLLQVVYL 271

Query: 241 SGCQLDHFHP------PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSN 293
               +              V  +  + + L +N      +  +    +++ + +  G+ 
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 24/142 (16%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
            LL +  L  L L  N         L  +  L+ L+L        +P  L +L  LQ + 
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF 248
           L  N      N++ +                   F         +    + L    + ++
Sbjct: 271 LHTN------NITKVG---------------VNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 249 HPPPIV--NISSISVLDLSSNQ 268
              P     ++    +   + +
Sbjct: 310 EVQPATFRCVTDRLAIQFGNYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 59/242 (24%), Positives = 92/242 (38%), Gaps = 31/242 (12%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLP-----GLSLLQHLDL 214
            +YLNL     + +      +L  L+ L L  N      ++  +      GL+ L  L+L
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN------SIRQIEVGAFNGLASLNTLEL 130

Query: 215 GGVNL----GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFD 270
               L      AF+       LS LR L L    ++         + S+  LDL      
Sbjct: 131 FDNWLTVIPSGAFE------YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--- 181

Query: 271 QNSL-VLSW-VF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWL 327
              L  +S   F GL NL YL+LG  + +  +P  L  L  L  L++S N F    P   
Sbjct: 182 -KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 328 ASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISL 387
              S+L  + + ++ +          L+ S+  L+L+   L       F  L  L E+ L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

Query: 388 SD 389
             
Sbjct: 298 HH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 20/223 (8%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
           +  H  HL  L L  NS           +  L  L L       +       LSKL+ L 
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
           L  N       +  +P      +  L  LDLG +   +      A   L +L+ L L  C
Sbjct: 154 LRNN------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC 206

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVG 302
            +     P +  +  +  L++S N F     +    F GLS+L  L + ++     I   
Sbjct: 207 NIKDM--PNLTPLVGLEELEMSGNHF---PEIRPGSFHGLSSLKKLWVMNSQVS-LIERN 260

Query: 303 -LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ 344
               L SL  L+L++N+ +S   +       LV + L  N   
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 58/266 (21%), Positives = 98/266 (36%), Gaps = 49/266 (18%)

Query: 209 LQHLDLGGVNL----GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDL 264
            ++L+L   N+       F        L  L VL+L    +          ++S++ L+L
Sbjct: 77  TRYLNLMENNIQMIQADTFR------HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 265 SSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSS 322
             N     +++ S  F  LS L  L L +N  + SIP      + SL  LDL        
Sbjct: 131 FDNWL---TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 323 IP-NWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCN 381
           I         NL +++L   +++  +      L   +E L++S        P SF  L +
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK-DMPNL-TPLV-GLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 382 LREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLS 441
           L+++ + + +    +S I                      F  L        SL  L L+
Sbjct: 244 LKKLWVMNSQ----VSLIER------------------NAFDGLA-------SLVELNLA 274

Query: 442 HNSISGLIPSSLGGLSSLERVVLSNN 467
           HN++S L       L  L  + L +N
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 25/255 (9%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           SN  YL+L  N+ Q  I     ++L  L  L L  N             ++L  + L  N
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
            L    +G    LS  +  L L +  +E     +F R+ +L  + L ++K  + ISE   
Sbjct: 134 WLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--G 190

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHF---KSLDSLFLSHNSISGLIPSSLGGLSS 458
            F    +  L+  ++  C I       + +      L+ L +S N    + P S  GLSS
Sbjct: 191 AFEGLFN--LKYLNLGMCNI-----KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 459 LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQS-- 515
           L+++ + N+ +   +       L+ LV  +++ N L+  +  D   P   L +L L    
Sbjct: 244 LKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301

Query: 516 ----CHLGPTFPFWL 526
               C +     +WL
Sbjct: 302 WNCDCDILW-LAWWL 315

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 59/303 (19%), Positives = 101/303 (33%), Gaps = 78/303 (25%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
             +   L L  N+I  +   +   L  LE + L  N+++  +       L+ L + ++  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 492 NALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF 550
           N LT  +         +L +L L++  +                          ++P+  
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-------------------------SIPSYA 166

Query: 551 WEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNA 610
           +   P L  L                       DL              +LE I  S  A
Sbjct: 167 FNRVPSLMRL-----------------------DLGELK----------KLEYI--SEGA 191

Query: 611 FSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SL 669
           F G     L N     L+ LNL   +   ++P+     + L  L +  N+F   + P S 
Sbjct: 192 FEG-----LFN-----LKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSF 238

Query: 670 GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNL 729
             L SL  L +  + +S     +      LV LN+  N  S  +P  +      +V L+L
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHL 297

Query: 730 RSN 732
             N
Sbjct: 298 HHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 5e-16
 Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 27/245 (11%)

Query: 544 DTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISFQ- 600
             VP           +LN   + I   I          L  + L  N++   + + +F  
Sbjct: 67  SEVPQGI---PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNG 121

Query: 601 ---LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY-LRVLNL 656
              L +++L +N  +  I       +  +L+ L L NN     IP    N +  L  L+L
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLS-KLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178

Query: 657 GNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPT 715
           G       +   +   L +L  L+L   ++   +P +L+    L  L M GN F  +I  
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRP 235

Query: 716 WIGEKFSSMVILNLRSN----IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA 771
                 SS+  L + ++    I    F      L SL  L+L +NNLS       + L  
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDG----LASLVELNLAHNNLSSLPHDLFTPLRY 291

Query: 772 MVTVD 776
           +V + 
Sbjct: 292 LVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 62/335 (18%), Positives = 100/335 (29%), Gaps = 115/335 (34%)

Query: 580 LRTVDLSSNNLSGTLPL-ISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638
              V  +   LS  +P  I      ++L  N                      ++ ++F 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQ------------------MIQADTFR 96

Query: 639 GEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCN 697
                   +  +L VL LG N+    +   +   L SL  L L  N L+     +    +
Sbjct: 97  --------HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 698 RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN 757
           +L  L +  N                    ++ S  F+         + SL  LDLG   
Sbjct: 148 KLRELWLRNNPIE-----------------SIPSYAFNR--------VPSLMRLDLGELK 182

Query: 758 LSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE 817
               I                                      +F               
Sbjct: 183 KLEYIS-----------------------------------EGAFEG------------- 194

Query: 818 LEYSTILYLVAL--IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSI 875
                   L  L  ++L   N   ++P  +T LV L  L +S NHF    P S   + S+
Sbjct: 195 --------LFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 876 EVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910
           + +   N+Q+S     +   L  L  LNL++N LS
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
           P+L     L  L++SGN F    P     +  LK L +  +    +  +    L+ L  L
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 188 DLVENSELYVDNLSWLP-----GLSLLQHLDLGG 216
           +L  N      NLS LP      L  L  L L  
Sbjct: 272 NLAHN------NLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 831 DLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSI-GAMKSIEVIDFSN-NQLSE 887
           +L  N  +  IP      L  LR L L  N     IP      + S+  +D     +L  
Sbjct: 129 ELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 888 EIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQS 921
               +   L  L  LNL    +  ++P  T L  
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVG 219

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
           ++L +NN           L  L  L L  N        +   + S+  ++  +N L+  I
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138

Query: 890 PRSV-SNLTFLNLLNLSYNYLSGEIPTST 917
           P      L+ L  L L  N +   IP+  
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 61/318 (19%), Positives = 110/318 (34%), Gaps = 70/318 (22%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL 219
           +K L+LS      +    L     LQ L L  N                +  ++      
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSN---------------GINTIEED---- 94

Query: 220 GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWV 279
             +F       SL SL  L LS   L +        +SS++ L+L  N +   +L  + +
Sbjct: 95  --SFS------SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSL 144

Query: 280 F-GLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS 337
           F  L+ L  L +G+ D    I       LT L  L++  +D  S  P  L S  N+ H+ 
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 338 LRSNSLQGSITGFLANLSASIEVLDLSS--------QQLEGQIPRSFGRLCNLREISLSD 389
           L        +     ++++S+E L+L           +L      S  +    R + ++D
Sbjct: 205 LHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 390 VKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLI 449
               + + +++ + +                              L  L  S N +  + 
Sbjct: 264 ----ESLFQVMKLLN--------------------------QISGLLELEFSRNQLKSVP 293

Query: 450 PSSLGGLSSLERVVLSNN 467
                 L+SL+++ L  N
Sbjct: 294 DGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 54/259 (20%), Positives = 90/259 (34%), Gaps = 49/259 (18%)

Query: 125 KINPSLLH-FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK 183
            I+ S L    +L  L L+ N           S+G L++L+LS      +       LS 
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 184 LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL-----GKAFDWSLAINSLSSLRVL 238
           L +L+L+ N    +   S    L+ LQ L +G ++       K F        L+ L  L
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA------GLTFLEEL 179

Query: 239 RLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQG 297
            +    L  + P  + +I ++S L L   Q     L+L       S++  L+L   D   
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 298 -------------------------------SIPVGLQNLTSLRHLDLSYNDFNSSIPNW 326
                                           +   L  ++ L  L+ S N    S+P+ 
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDG 295

Query: 327 -LASFSNLVHISLRSNSLQ 344
                ++L  I L +N   
Sbjct: 296 IFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 8e-16
 Identities = 59/333 (17%), Positives = 107/333 (32%), Gaps = 79/333 (23%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
             +  LDL +N     I    LQ   +L+ L L+ N  N+   +  +S  +L H+ L  N
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRS-FGRLCNLREISLSDVKMSQDISEIL 400
            L    + +   LS S+  L+L     +     S F  L  L+ + + ++     I    
Sbjct: 111 YLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-- 167

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLE 460
                              K F  LT        L+ L +  + +    P SL  + ++ 
Sbjct: 168 -------------------KDFAGLT-------FLEELEIDASDLQSYEPKSLKSIQNVS 201

Query: 461 RVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGP 520
            ++L        L EI +   S +   ++    L           F   +L         
Sbjct: 202 HLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD---------TFHFSEL--------S 243

Query: 521 TFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGL 580
           T     L +                              +  ++  +   +  L++ +GL
Sbjct: 244 TGETNSLIK------------------------KFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 581 RTVDLSSNNLSGTLPLISFQ----LESIDLSNN 609
             ++ S N L  ++P   F     L+ I L  N
Sbjct: 280 LELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 60/298 (20%), Positives = 111/298 (37%), Gaps = 44/298 (14%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
           + L+ +++ LDLS+ ++         R  NL+ + L+       I+ I +          
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG----INTIEE---------- 93

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471
                     F  L S       L+ L LS+N +S L  S    LSSL  + L  N  K 
Sbjct: 94  --------DSFSSLGS-------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 472 YLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQN 530
                  ++L+KL    V       K+          LE+L++ +  L    P  L S  
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 531 VLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRIN---------GEIPNLSKATGLR 581
            + +L +        +   F + +  +  L   ++ ++         GE  +L K    R
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 582 TVDLSSNNLSGTLPLISF--QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSF 637
            V ++  +L   + L++    L  ++ S N    S+   + + +   LQ + L  N +
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL-TSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 57/293 (19%), Positives = 101/293 (34%), Gaps = 45/293 (15%)

Query: 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNS 684
            ++ L+L NN  +          + L+ L L +N     +   S  SLGSL  L L  N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 685 LSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN-----IFDGQFP 739
           LS          + L  LN+ GN +     T +    + + IL + +      I    F 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 740 TELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRP 799
                LT L+ L++  ++L    PK + ++  +  +          +         L   
Sbjct: 172 ----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI---------LHMKQH--ILLL-E 215

Query: 800 RSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTD----LVALRSLN 855
                                   L L    DL   +FS E+    T+        R++ 
Sbjct: 216 IFVDV-------------TSSVECLELRDT-DLDTFHFS-ELSTGETNSLIKKFTFRNVK 260

Query: 856 LSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV-SNLTFLNLLNLSYN 907
           ++      ++   +  +  +  ++FS NQL   +P  +   LT L  + L  N
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 19/257 (7%)

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLS 591
            LD+S + I   +     +    L  L  +++ IN  I     S    L  +DLS N LS
Sbjct: 56  SLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 592 GTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN 647
             L    F     L  ++L  N +  ++          +LQ+L + N     +I      
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 648 FL-YLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDG 706
            L +L  L +  ++     P SL S+ +++ L L        +   +   + +  L +  
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 707 NQFSGDIPTWI--GEKFSSMVILNLRSNIFDG----QFPTELCFLTSLQILDLGYNNLSG 760
                   + +  GE  S +     R+         Q    L  ++ L  L+   N L  
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291

Query: 761 AIPKCI-SNLSAMVTVD 776
            +P  I   L+++  + 
Sbjct: 292 -VPDGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 48/295 (16%), Positives = 91/295 (30%), Gaps = 42/295 (14%)

Query: 489 VSGNALTLKVGPDWIPPFQLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDTV 546
             G++ +L   P  +    ++ LDL +  +               L  L ++ +GI  T+
Sbjct: 36  CKGSSGSLNSIPSGLTE-AVKSLDLSNNRITYISNSDLQRCVN--LQALVLTSNGIN-TI 91

Query: 547 PARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISFQ---- 600
               + +   L  L+ S + +   + +      + L  ++L  N          F     
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 601 LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNN 660
           L+ + + N      I      G+   L+ L ++ +      P    +   +  L L    
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

Query: 661 FTGNLPP-SLGSLGSLTLLHLQKN--------SLSGRIPESLSNCNRLVSLNMDGNQFSG 711
               L    +    S+  L L+           LS     SL       ++ +       
Sbjct: 210 HI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268

Query: 712 DIPTWIGEKFSSMVILNLRSN--------IFDGQFPTELCFLTSLQILDLGYNNL 758
            +      + S ++ L    N        IFD         LTSLQ + L  N  
Sbjct: 269 VMKLL--NQISGLLELEFSRNQLKSVPDGIFDR--------LTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 42/275 (15%), Positives = 80/275 (29%), Gaps = 80/275 (29%)

Query: 651 LRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQF 709
           ++ L+L NN  T  +  S L    +L  L L  N ++    +S S+   L  L++  N  
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY- 111

Query: 710 SGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNL 769
                           + NL S+ F          L+SL  L+L  N             
Sbjct: 112 ----------------LSNLSSSWFKP--------LSSLTFLNLLGNPYK---------- 137

Query: 770 SAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829
                                     L     FS             +L+   +  +   
Sbjct: 138 -------------------------TLGETSLFSHL----------TKLQILRVGNMDTF 162

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
             + + +F+G        L  L  L +  +      P S+ +++++  +     Q    +
Sbjct: 163 TKIQRKDFAG--------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 890 PRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDA 924
              V   + +  L L    L     +       ++
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.1 bits (232), Expect = 6e-20
 Identities = 97/485 (20%), Positives = 159/485 (32%), Gaps = 100/485 (20%)

Query: 209 LQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNI----SSISVLDL 264
           +Q LD+    L  A  W+  +  L   +V+RL  C L       I +      +++ L+L
Sbjct: 5   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 265 SSNQF-DQNSLVLSWVFGLSN--LVYLDLGSNDFQ----GSIPVGLQNLTSLRHLDLSYN 317
            SN+  D     +       +  +  L L +        G +   L+ L +L+ L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 318 DFNSSIPNWLASF-----SNLVHISLRSNSLQGSITGFLANL---SASIEVLDLSSQQLE 369
               +    L          L  + L   SL  +    LA++       + L +S+  + 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 370 GQIPRSFGRL-----CNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGH 424
               R   +      C L  + L    ++ D                       C+    
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSD----------------------NCR---D 218

Query: 425 LTSQIGHFKSLDSLFLSHNSISG-----LIPSSLGGLSSLERVVLSNNTLK----GYLSE 475
           L   +    SL  L L  N +       L P  L   S L  + +    +     G L  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 476 IHLANLSKLVSFDVSGNALTLKVGPDWI------PPFQLEKLDLQSCHLGPTFPFWL--- 526
           + L     L    ++GN L  + G   +      P  QLE L ++SC             
Sbjct: 279 V-LRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 527 LSQN-VLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDL 585
           L+QN  L  L IS + ++D       +       L    S              LR + L
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQG------LGQPGSV-------------LRVLWL 377

Query: 586 SSNNLS--GTLPLISF-----QLESIDLSNNAFSGSISPVLCNGMR---GELQVLNLENN 635
           +  ++S      L +       L  +DLSNN    +    L   +R     L+ L L + 
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 636 SFSGE 640
            +S E
Sbjct: 438 YWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 1e-14
 Identities = 86/442 (19%), Positives = 132/442 (29%), Gaps = 79/442 (17%)

Query: 132 HFQHLNYLDLSGNSFG----GGIPRFLGSMGKLKYLNLSG-----AGFKGMIPHQLGNLS 182
             Q    + L            I   L     L  LNL        G   ++        
Sbjct: 26  LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85

Query: 183 KLQYLDLVEN--SELYVDNL-SWLPGLSLLQHLDLGGVNLGKAFDWSLA---INSLSSLR 236
           K+Q L L     +      L S L  L  LQ L L    LG A    L    ++    L 
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 237 VLRLSGCQLDHFHPPPIVNI----SSISVLDLSSNQF-DQNSLVLSWVFGLSN--LVYLD 289
            L+L  C L      P+ ++         L +S+N   +    VL      S   L  L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 290 LGSNDFQ----GSIPVGLQNLTSLRHLDLSYNDFNSS-----IPNWLASFSNLVHISLRS 340
           L S          +   + +  SLR L L  N           P  L   S L  + +  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 341 NSLQGSITGFLANL---SASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDIS 397
             +     G L  +     S++ L L+  +L  +  R            L          
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL---------- 315

Query: 398 EILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSI--SGLIPSSLG- 454
           E L + S   +          C    H +S +   + L  L +S+N +  +G+     G 
Sbjct: 316 ESLWVKSCSFTAA-------CCS---HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365

Query: 455 --GLSSLERVVLSNN--TLKG--YLSEIHLANLSKLVSFDVSGNALT----------LKV 498
               S L  + L++   +      L+   L     L   D+S N L           ++ 
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQ 424

Query: 499 GPDWIPPFQLEKLDLQSCHLGP 520
                P   LE+L L   +   
Sbjct: 425 -----PGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.4 bits (186), Expect = 3e-14
 Identities = 73/389 (18%), Positives = 126/389 (32%), Gaps = 66/389 (16%)

Query: 433 KSLDSLFLSHNSISGL-IPSSLGGLSSLERVVLSNNTLK----GYLSEIHLANLSKLVSF 487
             + SL +    +S       L  L   + V L +  L       +S   L     L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAEL 61

Query: 488 DVSGNALT----------LKVGPDWIPPFQLEKLDLQSCHLGPT----FPFWLLSQNVLG 533
           ++  N L           L+      P  +++KL LQ+C L           L +   L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQT-----PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 534 YLDISRSGIQDTVPARFWEA----SPQLYFLNFSNSRINGE-----IPNLSKATGLRTVD 584
            L +S + + D       E       +L  L      ++          L      + + 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 585 LSSNN--------LSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLEN 634
           +S+N+        L   L     QLE++ L +   +      LC  +     L+ L L +
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 635 NSFSGE-----IPDCWMNFLYLRVLNLGNNNFT----GNLPPSLGSLGSLTLLHLQKNSL 685
           N           P        LR L +     T    G+L   L +  SL  L L  N L
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 686 SG----RIPESLSNCN-RLVSLNMDGNQFSGDIPTWIGE---KFSSMVILNLRSNIFDGQ 737
                  + E+L     +L SL +    F+    +       +   ++ L + +N  +  
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 738 FPTELC-----FLTSLQILDLGYNNLSGA 761
              ELC       + L++L L   ++S +
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.0 bits (185), Expect = 4e-14
 Identities = 86/474 (18%), Positives = 154/474 (32%), Gaps = 106/474 (22%)

Query: 307 TSLRHLDLSYNDFN-SSIPNWLASFSNLVHISLRSNSLQGSITGFLANL---SASIEVLD 362
             ++ LD+   + + +     L        + L    L  +    +++    + ++  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 363 LSSQQLEGQIPRSFGRL-----CNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           L S +L         +      C ++++SL +  ++                        
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA---------------------- 100

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISG-----LIPSSLGGLSSLERVVLSNNTLK-- 470
           GC     L+S +    +L  L LS N +       L    L     LE++ L   +L   
Sbjct: 101 GCG---VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 471 --GYLSEIHLANLSKLVSFDVSGNAL----------TLKVGPDWIPPFQLEKLDLQSCHL 518
               L+ + L          VS N +           LK       P QLE L L+SC +
Sbjct: 158 SCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKD-----SPCQLEALKLESCGV 211

Query: 519 GPT----FPFWLLSQNVLGYLDISRSGIQDTVPARFWEA----SPQLYFLNFSNSRINGE 570
                      + S+  L  L +  + + D   A         S +L  L      I  +
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271

Query: 571 -IPNLSKA----TGLRTVDLSSNN--------LSGTLPLISFQLESIDLSNNAFSGSISP 617
              +L +       L+ + L+ N         L  TL     QLES+ + + +F+ +   
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331

Query: 618 VLCNGMRG--ELQVLNLENNSFSGE----------IPDCWMNFLYLRVLNLGNNNFT--- 662
              + +     L  L + NN                P        LRVL L + + +   
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-----VLRVLWLADCDVSDSS 386

Query: 663 -GNLPPSLGSLGSLTLLHLQKNSLSG----RIPESLSNCN-RLVSLNMDGNQFS 710
             +L  +L +  SL  L L  N L      ++ ES+      L  L +    +S
Sbjct: 387 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 8e-13
 Identities = 82/518 (15%), Positives = 144/518 (27%), Gaps = 150/518 (28%)

Query: 283 SNLVYLDLGSNDFQ-GSIPVGLQNLTSLRHLDLSYNDFN----SSIPNWLASFSNLVHIS 337
            ++  LD+   +         L  L   + + L            I + L     L  ++
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 338 LRSNSLQGS----ITGFLANLSASIEVLDLSSQQLEGQ----IPRSFGRLCNLREISLSD 389
           LRSN L       +   L   S  I+ L L +  L G     +  +   L  L+E     
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE----- 117

Query: 390 VKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSIS--- 446
                     L +  + + D        G ++             L+ L L + S+S   
Sbjct: 118 ----------LHLSDNLLGD-------AGLQLLCEGLLDPQ--CRLEKLQLEYCSLSAAS 158

Query: 447 -GLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNAL--TLKVGPDWI 503
              + S L      + + +SNN +                  +     L   LK      
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDIN-----------------EAGVRVLCQGLKD----- 196

Query: 504 PPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFS 563
            P QLE L L+SC +                 D+               +   L  L   
Sbjct: 197 SPCQLEALKLESCGVTSD-----------NCRDL----------CGIVASKASLRELALG 235

Query: 564 NSRINGE-IPNLSKA-----TGLRTVDLSSNNLS-------GTLPLISFQLESIDLSNNA 610
           ++++    +  L        + LRT+ +    ++         +      L+ + L+ N 
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 611 FSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTG----NLP 666
                + +LC           L                  L  L + + +FT     +  
Sbjct: 296 LGDEGARLLCET---------LLEPGCQ------------LESLWVKSCSFTAACCSHFS 334

Query: 667 PSLGSLGSLTLLHLQKNSLSG----RIPESLSNCN-RLVSLNMDGNQFSGDIPTWIGEKF 721
             L     L  L +  N L       + + L      L  L +            + +  
Sbjct: 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD--------VSDSS 386

Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
            S +   L +N              SL+ LDL  N L 
Sbjct: 387 CSSLAATLLAN-------------HSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.8 bits (169), Expect = 3e-12
 Identities = 67/380 (17%), Positives = 120/380 (31%), Gaps = 69/380 (18%)

Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
           L     L  L LS N                    L  AG + +    L    +L+ L L
Sbjct: 109 LRTLPTLQELHLSDN-------------------LLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 190 VEN--SELYVDNL-SWLPGLSLLQHLDLGGVNLGKAFDWSLA---INSLSSLRVLRLSGC 243
                S    + L S L      + L +   ++ +A    L     +S   L  L+L  C
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 244 QLDHFHPPPIVNI----SSISVLDLSSNQFDQ---NSLVLSWVFGLSNLVYLDLGSNDFQ 296
            +   +   +  I    +S+  L L SN+        L    +   S L  L +      
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 297 ----GSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLA-----SFSNLVHISLRSNSLQGSI 347
               G +   L+   SL+ L L+ N+        L          L  + ++S S   + 
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 348 TGFLANL---SASIEVLDLSSQQLEGQIPRSFGRL-----CNLREISLSDVKMS----QD 395
               +++   +  +  L +S+ +LE    R   +        LR + L+D  +S      
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389

Query: 396 ISEILDIFSSCISDRLESWDMTGCKI----FGHLTSQIGHFKS-LDSLFLSHNSISGLIP 450
           ++  L    +  S  L   D++   +       L   +      L+ L L     S    
Sbjct: 390 LAATL---LANHS--LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE--- 441

Query: 451 SSLGGLSSLERVVLSNNTLK 470
                   L+ +     +L+
Sbjct: 442 ---EMEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 2e-11
 Identities = 61/406 (15%), Positives = 118/406 (29%), Gaps = 69/406 (16%)

Query: 554 SPQLYFLNFSNSRINGE-IPNLSKA-TGLRTVDLSSNNLS--GTLPLISF-----QLESI 604
           S  +  L+     ++      L       + V L    L+      + S       L  +
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 605 DLSNNAFSGSISPVLCNGMRGE---LQVLNLENNSFSGE----IPDCWMNFLYLRVLNLG 657
           +L +N         +  G++     +Q L+L+N   +G     +         L+ L+L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 658 NNNFTGNLPPSLGSLG-----SLTLLHLQKNSLSGR----IPESLSNCNRLVSLNMDGNQ 708
           +N         L          L  L L+  SLS      +   L        L +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 709 FSGDIPTWIGEKFS----SMVILNLRSNIFDGQ----FPTELCFLTSLQILDLGYNNLSG 760
            +      + +        +  L L S              +    SL+ L LG N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 761 AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEY 820
                ++ L         L      +    +   C    +   D + +     +      
Sbjct: 242 V---GMAELCPG------LLHPSSRLRTLWI-WECGITAKGCGD-LCRVLRAKE------ 284

Query: 821 STILYLVALIDLSKNNFSGEIPVEVTDLV-----ALRSLNLSYNHFSGR----IPDSIGA 871
            ++  L     L+ N    E    + + +      L SL +    F+          +  
Sbjct: 285 -SLKEL----SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 872 MKSIEVIDFSNNQLSEEIPRSVS-----NLTFLNLLNLSYNYLSGE 912
            + +  +  SNN+L +   R +        + L +L L+   +S  
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 2e-11
 Identities = 86/483 (17%), Positives = 143/483 (29%), Gaps = 95/483 (19%)

Query: 482 SKLVSFDVSGNALTLKVGPDWIPPFQ-LEKLDLQSCHLGPT----FPFWLLSQNVLGYLD 536
             + S D+    L+     + +P  Q  + + L  C L           L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 537 ISRSGIQDTVPARFWEA----SPQLYFLNFSNSRINGE-----IPNLSKATGLRTVDLSS 587
           +  + + D       +     S ++  L+  N  + G         L     L+ + LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 588 NN--------LSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLENNSF 637
           N         L   L     +LE + L   + S +    L + +R   + + L + NN  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 638 SGE-----IPDCWMNFLYLRVLNLGNNNFT----GNLPPSLGSLGSLTLLHLQKNSLSGR 688
           +             +   L  L L +   T     +L   + S  SL  L L  N L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 689 ----IPESLSNCN-RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELC 743
               +   L + + RL +L +            I  K    +   LR+            
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECG--------ITAKGCGDLCRVLRAK----------- 283

Query: 744 FLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFS 803
              SL+ L L  N L     + +            L +    +    + +SC       S
Sbjct: 284 --ESLKELSLAGNELGDEGARLLCET---------LLEPGCQLESLWV-KSCSFTAACCS 331

Query: 804 DPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVA-----LRSLNLSY 858
                         L  +  L     + +S N        E+   +      LR L L+ 
Sbjct: 332 H-FSSV--------LAQNRFL---LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 859 NHFSGRIPDSIGAM----KSIEVIDFSNNQLSEEIPRSVS-----NLTFLNLLNLSYNYL 909
              S     S+ A      S+  +D SNN L +     +          L  L L   Y 
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

Query: 910 SGE 912
           S E
Sbjct: 440 SEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.0 bits (159), Expect = 6e-11
 Identities = 69/443 (15%), Positives = 136/443 (30%), Gaps = 91/443 (20%)

Query: 527 LSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGE-----IPNLSKATGLR 581
           +S + +  LDI    + D   A       Q   +   +  +           L     L 
Sbjct: 1   MSLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 582 TVDLSSNN--------LSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRG--ELQVLN 631
            ++L SN         +   L   S +++ + L N   +G+   VL + +R    LQ L+
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 632 LENNSFSGE----------IPDCWMNFLYLRVLNLGNNNFT----GNLPPSLGSLGSLTL 677
           L +N                P C      L  L L   + +      L   L +      
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQC-----RLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 678 LHLQKNSLSGR----IPESLSNCN-RLVSLNMDGNQFSGDIPTWIGEKFS---SMVILNL 729
           L +  N ++      + + L +   +L +L ++    + D    +    +   S+  L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 730 RSNIFDGQFPTELC-----FLTSLQILDLGYNNLS----GAIPKCISNLSAMVTVDYPLG 780
            SN        ELC       + L+ L +    ++    G + + +    ++  +   L 
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS--LA 292

Query: 781 DTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGE 840
               G     L    L  P                       +  L     +   +F+  
Sbjct: 293 GNELGDEGARLLCETLLEPGC--------------------QLESL----WVKSCSFTAA 328

Query: 841 IPVEVTDLVA----LRSLNLSYNHFSGRIPDSIGAM-----KSIEVIDFSNNQLSEE--- 888
                + ++A    L  L +S N         +          + V+  ++  +S+    
Sbjct: 329 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS 388

Query: 889 -IPRSVSNLTFLNLLNLSYNYLS 910
            +  ++     L  L+LS N L 
Sbjct: 389 SLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 6e-08
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 64/354 (18%)

Query: 597 ISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY------ 650
           +S  ++S+D+     S +    L   ++ + QV+ L++   +        +         
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLT---EARCKDISSALRVNP 56

Query: 651 -LRVLNLGNNNFTGN----LPPSLGSLG-SLTLLHLQKNSLSGR----IPESLSNCNRLV 700
            L  LNL +N         +   L +    +  L LQ   L+G     +  +L     L 
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 701 SLNMDGNQFSGD----IPTWIGEKFSSMVILNLRSNIFDGQFPTELCFL----TSLQILD 752
            L++  N         +   + +    +  L L            L  +       + L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 753 LGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLV 812
           +  N+++ A  + +            L D+   +    L    +      +    +    
Sbjct: 177 VSNNDINEAGVRVLCQG---------LKDSPCQLEALKLESCGV------TSDNCRDL-- 219

Query: 813 MKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLV-----ALRSLNLSYNHFSGR--- 864
                +     L     + L  N        E+   +      LR+L +     + +   
Sbjct: 220 --CGIVASKASL---RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 865 -IPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNL-----TFLNLLNLSYNYLSGE 912
            +   + A +S++ +  + N+L +E  R +          L  L +     +  
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 2e-16
 Identities = 59/321 (18%), Positives = 106/321 (33%), Gaps = 32/321 (9%)

Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRV 237
               ++    +L + S   V +      L+ +  +     ++         I  L ++  
Sbjct: 17  DDAFAETIKDNLKKKS---VTDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTK 69

Query: 238 LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
           L L+G +L      P+ N+ ++  L L  N+       LS +  L  L  L L  N    
Sbjct: 70  LFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNGIS- 122

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
            I  GL +L  L  L L  N   + I   L+  + L  +SL  N +   I   LA L+  
Sbjct: 123 DIN-GLVHLPQLESLYLGNNKI-TDITV-LSRLTKLDTLSLEDNQIS-DIVP-LAGLT-K 176

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           ++ L LS   +     R+   L NL  + L   +                +  +++ D +
Sbjct: 177 LQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT--VKNTDGS 232

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
                      I      +   +  +        S       + V +     + +     
Sbjct: 233 LVTPE-----IISDDGDYEKPNVKWHLPEFTNEVS---FIFYQPVTIGKAKARFHGRVTQ 284

Query: 478 LANLSKLVSFDVSGNALTLKV 498
                  VS+DV G  +  KV
Sbjct: 285 PLKEVYTVSYDVDGTVIKTKV 305

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.5 bits (203), Expect = 3e-16
 Identities = 51/238 (21%), Positives = 90/238 (37%), Gaps = 24/238 (10%)

Query: 534 YLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT 593
             ++ +  + D V          +  +  +NS I   +  +     +  + L+ N L+  
Sbjct: 25  KDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDI 80

Query: 594 LPLISF-QLESIDLSNNAFSGSISPV--LCNGMRGELQVLNLENNSFSGEIPDCWMNFLY 650
            PL +   L  + L  N     +S +  L       L+ L+LE+N  S +I     +   
Sbjct: 81  KPLTNLKNLGWLFLDENKIK-DLSSLKDLKK-----LKSLSLEHNGIS-DINGLV-HLPQ 132

Query: 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
           L  L LGNN  T ++   L  L  L  L L+ N +S  I   L+   +L +L +  N  S
Sbjct: 133 LESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS 188

Query: 711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISN 768
            D+         ++ +L L S     +       L     +     +L    P+ IS+
Sbjct: 189 -DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISD 241

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 4e-16
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 25/246 (10%)

Query: 555 PQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSG 613
            +    N     +  +    ++   +  +  +++++     +     +  + L+ N  + 
Sbjct: 21  AETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT- 78

Query: 614 SISPV--LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGS 671
            I P+  L N     L  L L+ N    ++     +   L+ L+L +N  + ++   L  
Sbjct: 79  DIKPLTNLKN-----LGWLFLDENKIK-DLSSL-KDLKKLKSLSLEHNGIS-DING-LVH 129

Query: 672 LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRS 731
           L  L  L+L  N ++      LS   +L +L+++ NQ S DI        + +  L L  
Sbjct: 130 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSK 184

Query: 732 N-IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLG--DTHPGITD 788
           N I D      L  L +L +L+L             SNL    TV    G   T   I+D
Sbjct: 185 NHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 789 CSLYRS 794
              Y  
Sbjct: 242 DGDYEK 247

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.7 bits (201), Expect = 5e-16
 Identities = 42/219 (19%), Positives = 76/219 (34%), Gaps = 23/219 (10%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
            +      ++ +  + +     I     +  +  +  L L+G     + P  L NL  L 
Sbjct: 37  VTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLG 90

Query: 186 YLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQL 245
           +L L EN    + +LS L  L  L+ L L    +         +  L  L  L L   ++
Sbjct: 91  WLFLDENK---IKDLSSLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKI 143

Query: 246 DHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQN 305
                  +  ++ +  L L  NQ       +  + GL+ L  L L  N     +   L  
Sbjct: 144 TDI--TVLSRLTKLDTLSLEDNQISD----IVPLAGLTKLQNLYLSKNHIS-DLR-ALAG 195

Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ 344
           L +L  L+L   +  +   N  ++      +     SL 
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 3e-15
 Identities = 47/256 (18%), Positives = 92/256 (35%), Gaps = 55/256 (21%)

Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
             +  +  +L       ++      L S+  +  + +D   S+   +    N+  + L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNG 74

Query: 341 NSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
           N L   I   L NL  ++  L L   +++  +  S   L  L+ +SL        IS+I 
Sbjct: 75  NKLT-DIKP-LTNLK-NLGWLFLDENKIK-DLS-SLKDLKKLKSLSLE----HNGISDI- 124

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLE 460
                                     + + H   L+SL+L +N I+ +  + L  L+ L+
Sbjct: 125 --------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156

Query: 461 RVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF----QLEKLDLQSC 516
            + L +N +   +    LA L+KL +  +S N ++       +        L+ L+L S 
Sbjct: 157 TLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHIS------DLRALAGLKNLDVLELFSQ 207

Query: 517 HLGPTFPFWLLSQNVL 532
                      +  V 
Sbjct: 208 ECLNKPINHQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 2e-14
 Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 21/194 (10%)

Query: 130 LLHFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
           + +  ++  L L+GN     +     L ++  L +L L     K +    L +L KL+ L
Sbjct: 61  IQYLPNVTKLFLNGNK----LTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSL 114

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
            L  N    + +++ L  L  L+ L LG  N          ++ L+ L  L L   Q+  
Sbjct: 115 SLEHN---GISDINGLVHLPQLESLYLGN-NKITDIT---VLSRLTKLDTLSLEDNQISD 167

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
               P+  ++ +  L LS N        L  + GL NL  L+L S +          NL 
Sbjct: 168 I--VPLAGLTKLQNLYLSKNHISD----LRALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 308 SLRHLDLSYNDFNS 321
               +  +     +
Sbjct: 222 VPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 3e-14
 Identities = 42/318 (13%), Positives = 94/318 (29%), Gaps = 68/318 (21%)

Query: 435 LDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNAL 494
           +         I  + P      +   +  L   ++      +    L+ +     + +  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-- 53

Query: 495 TLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEAS 554
                        ++ +                    + YL                   
Sbjct: 54  ------------DIKSVQ------------------GIQYL------------------- 64

Query: 555 PQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSG 613
           P +  L  + +++  +I  L+    L  + L  N +     L    +L+S+ L +N  S 
Sbjct: 65  PNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS- 122

Query: 614 SISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG 673
            I+ ++      +L+ L L NN  +            L  L+L +N  + ++ P L  L 
Sbjct: 123 DINGLVHLP---QLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLT 175

Query: 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNI 733
            L  L+L KN +S     +L+    L  L +   +                 + N   ++
Sbjct: 176 KLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 734 FDGQFPTELCFLTSLQIL 751
              +  ++        + 
Sbjct: 234 VTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.4 bits (177), Expect = 4e-13
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 126/360 (35%)

Query: 560 LNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPV 618
               ++ I  +I            +L   +++  +       ++ I  +N+    S+   
Sbjct: 4   TITVSTPIK-QIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG- 60

Query: 619 LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLL 678
                   +Q                      +  L L  N  T ++ P L +L +L  L
Sbjct: 61  --------IQ------------------YLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWL 92

Query: 679 HLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQF 738
            L +N +   +  SL +  +L SL+++ N  S DI                         
Sbjct: 93  FLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING----------------------- 126

Query: 739 PTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPR 798
              L  L  L+ L LG N ++      I+ LS +                          
Sbjct: 127 ---LVHLPQLESLYLGNNKIT-----DITVLSRL-------------------------- 152

Query: 799 PRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSY 858
                             +L+          + L  N  S +I   +  L  L++L LS 
Sbjct: 153 -----------------TKLDT---------LSLEDNQIS-DIV-PLAGLTKLQNLYLSK 184

Query: 859 NHFSGRIPD--SIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS 916
           NH    I D  ++  +K+++V++  + +   +     SNL   N +  +   L      S
Sbjct: 185 NH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 7e-06
 Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 74/254 (29%)

Query: 675 LTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN-I 733
           +         +    P         +  N+     +  +      + +S+  +   ++ I
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDI 55

Query: 734 FDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYR 793
              Q    + +L ++  L L  N L+      I  L+ +                     
Sbjct: 56  KSVQG---IQYLPNVTKLFLNGNKLT-----DIKPLTNL--------------------- 86

Query: 794 SCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRS 853
                                 K L +         + L +N    ++   + DL  L+S
Sbjct: 87  ----------------------KNLGW---------LFLDENKIK-DLS-SLKDLKKLKS 113

Query: 854 LNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS--G 911
           L+L +N  S  I + +  +  +E +   NN++++     +S LT L+ L+L  N +S   
Sbjct: 114 LSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV 169

Query: 912 EIPTSTQLQSFDAS 925
            +   T+LQ+   S
Sbjct: 170 PLAGLTKLQNLYLS 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 55/242 (22%), Positives = 96/242 (39%), Gaps = 21/242 (8%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
            +      +  L   G      I   +  +  L  L L       + P  L NL+K+  L
Sbjct: 35  VTQADLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITEL 90

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
           +L  N    + N+S + GL  ++ LDL    +    D +  +  LS+L+VL L   Q+ +
Sbjct: 91  ELSGN---PLKNVSAIAGLQSIKTLDLTSTQIT---DVT-PLAGLSNLQVLYLDLNQITN 143

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
               P+  ++++  L + + Q       L+ +  LS L  L    N     I   L +L 
Sbjct: 144 I--SPLAGLTNLQYLSIGNAQVSD----LTPLANLSKLTTLKADDNKIS-DIS-PLASLP 195

Query: 308 SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQ 367
           +L  + L  N  +   P  LA+ SNL  ++L + ++      +  NL     V   S   
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

Query: 368 LE 369
           + 
Sbjct: 254 IA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 51/236 (21%), Positives = 93/236 (39%), Gaps = 24/236 (10%)

Query: 154 LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLD 213
             ++     +    +     +     +L  +  L         V  +  +  L+ L  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG---VTTIEGVQYLNNLIGLE 69

Query: 214 LGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNS 273
           L    +         + +L+ +  L LSG  L +     I  + SI  LDL+S Q     
Sbjct: 70  LKDNQITDL----APLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-- 121

Query: 274 LVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNL 333
             ++ + GLSNL  L L  N    +I   L  LT+L++L +      S +   LA+ S L
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQV-SDLTP-LANLSKL 175

Query: 334 VHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
             +    N +   I+  LA+L  ++  + L + Q+    P       NL  ++L++
Sbjct: 176 TTLKADDNKIS-DISP-LASLP-NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 42/216 (19%), Positives = 89/216 (41%), Gaps = 25/216 (11%)

Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
            L+N + +  G ++      V   +L  +  L        ++I   +   +NL+ + L+ 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKD 72

Query: 341 NSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
           N +   +   L NL+  I  L+LS   L+  +  +   L +++ + L+        ++I 
Sbjct: 73  NQIT-DLAP-LKNLT-KITELELSGNPLK-NVS-AIAGLQSIKTLDLTS-------TQIT 120

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLE 460
           D+        L+   +   +I     S +    +L  L + +  +S L  + L  LS L 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176

Query: 461 RVVLSNNTLKGYLSEIH-LANLSKLVSFDVSGNALT 495
            +   +N     +S+I  LA+L  L+   +  N ++
Sbjct: 177 TLKADDN----KISDISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 54/295 (18%), Positives = 109/295 (36%), Gaps = 57/295 (19%)

Query: 327 LASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREIS 386
             + +N + I+   +++  ++T   A+L   I  L      +   I      L NL  + 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVT-TIE-GVQYLNNLIGLE 69

Query: 387 LSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSIS 446
           L D       ++I D+                        + + +   +  L LS N + 
Sbjct: 70  LKD-------NQITDL------------------------APLKNLTKITELELSGNPLK 98

Query: 447 GLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF 506
            +  S++ GL S++ + L++  +        LA LS L    +  N +T       I P 
Sbjct: 99  NV--SAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITN------ISPL 147

Query: 507 ----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNF 562
                L+ L + +  +    P   LS+  L  L    + I D  P     + P L  ++ 
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLANLSK--LTTLKADDNKISDISP---LASLPNLIEVHL 202

Query: 563 SNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISP 617
            N++I+ ++  L+  + L  V L++  ++      +  L   ++        I+P
Sbjct: 203 KNNQIS-DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 19/199 (9%)

Query: 563 SNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCN 621
             + IN  I           +    +N++ T+       + ++       + +I  V   
Sbjct: 5   QPTAIN-VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEGV--- 59

Query: 622 GMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQ 681
                L  L L++N  + ++     N   +  L L  N    N+   +  L S+  L L 
Sbjct: 60  QYLNNLIGLELKDNQIT-DLAPL-KNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLT 115

Query: 682 KNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN-IFDGQFPT 740
              ++      L+  + L  L +D NQ + +I        +++  L++ +  + D    T
Sbjct: 116 STQITD--VTPLAGLSNLQVLYLDLNQIT-NISPL--AGLTNLQYLSIGNAQVSD---LT 167

Query: 741 ELCFLTSLQILDLGYNNLS 759
            L  L+ L  L    N +S
Sbjct: 168 PLANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 42/278 (15%), Positives = 97/278 (34%), Gaps = 50/278 (17%)

Query: 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSL 685
               +    ++ +  +     +   +  L+      T  +   +  L +L  L L+ N +
Sbjct: 20  NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI 75

Query: 686 SGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFL 745
           +      L N  ++  L + GN    ++         S+  L+L S       P  L  L
Sbjct: 76  TD--LAPLKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITDVTP--LAGL 128

Query: 746 TSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDP 805
           ++LQ+L L  N ++   P  ++ L+ +  +   +G+    ++D +              P
Sbjct: 129 SNLQVLYLDLNQITNISP--LAGLTNLQYLS--IGNAQ--VSDLT--------------P 168

Query: 806 IEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRI 865
           +                 L  +  +    N  S +I   +  L  L  ++L  N  S   
Sbjct: 169 LAN---------------LSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISD-- 209

Query: 866 PDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLN 903
              +    ++ ++  +N  ++ +     +NL   N++ 
Sbjct: 210 VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 39/262 (14%), Positives = 90/262 (34%), Gaps = 78/262 (29%)

Query: 669 LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILN 728
             +L +   +   K++++     + ++ + + +L+  G   +  I     +  ++++ L 
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLE 69

Query: 729 LRSN-IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787
           L+ N I D      L  LT +  L+L  N L     K +S ++ +               
Sbjct: 70  LKDNQITD---LAPLKNLTKITELELSGNPL-----KNVSAIAGL--------------- 106

Query: 788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTD 847
                                       + ++          +DL+    +   P+    
Sbjct: 107 ----------------------------QSIKT---------LDLTSTQITDVTPLA--G 127

Query: 848 LVALRSLNLSYNHFSGRIPD--SIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLS 905
           L  L+ L L  N    +I +   +  + +++ +   N Q+S+  P  ++NL+ L  L   
Sbjct: 128 LSNLQVLYLDLN----QITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181

Query: 906 YNYLSG--EIPTSTQLQSFDAS 925
            N +S    + +   L      
Sbjct: 182 DNKISDISPLASLPNLIEVHLK 203

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 10/172 (5%)

Query: 218 NLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLS 277
            LG++   ++    ++SL  + L+   +       I    +I  L +++          +
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATN----YN 82

Query: 278 WVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS 337
            + GLSNL  L +   D        L  LTSL  LD+S++  + SI   + +   +  I 
Sbjct: 83  PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 338 LRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
           L  N     I   L  L   ++ L++    +             L ++    
Sbjct: 143 LSYNGAITDIMP-LKTLP-ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 12/165 (7%)

Query: 157 MGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGG 216
           M  L Y+ L+      +    +     ++ L +         N + + GLS L+ L + G
Sbjct: 43  MNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH---ATNYNPISGLSNLERLRIMG 97

Query: 217 VNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVL 276
            ++    D    ++ L+SL +L +S    D      I  +  ++ +DLS N    +   +
Sbjct: 98  KDVTS--DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD---I 152

Query: 277 SWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS 321
             +  L  L  L++  +         +++   L  L         
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 31/167 (18%), Positives = 67/167 (40%), Gaps = 13/167 (7%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           +++L Y+ L + +    +  G++   +++ L ++     +  P  ++  SNL  + +   
Sbjct: 43  MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
            +       L+ L+ S+ +LD+S    +  I      L  +  I LS      DI  +  
Sbjct: 99  DVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-- 155

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGL 448
              +     L+S ++    +  H    I  F  L+ L+    +I G 
Sbjct: 156 --KTLPE--LKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 31/203 (15%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 560 LNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPV 618
           LN    + +      ++   L  + L++ N++    +     ++ + ++N   + + +P+
Sbjct: 26  LNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYNPI 84

Query: 619 LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLL 678
                        L N                L  L +   + T +  P+L  L SLTLL
Sbjct: 85  S-----------GLSN----------------LERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 679 HLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN-IFDGQ 737
            +  ++    I   ++   ++ S+++  N    DI     +    +  LN++ + + D  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHD-- 173

Query: 738 FPTELCFLTSLQILDLGYNNLSG 760
               +     L  L      + G
Sbjct: 174 -YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 25/214 (11%), Positives = 68/214 (31%), Gaps = 41/214 (19%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
               +   LG +       +    + SL ++ L+  +  + +   +    N+  +++ + 
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINNI 76

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
               +    ++ LS ++E L +  + +      +   L +L  + +S             
Sbjct: 77  HA--TNYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH------------ 121

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLER 461
                                  + ++I     ++S+ LS+N     I   L  L  L+ 
Sbjct: 122 -----------------SAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKS 163

Query: 462 VVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT 495
           + +  + +  Y     + +  KL         + 
Sbjct: 164 LNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191
           +  ++  L ++        P  +  +  L+ L + G          L  L+ L  LD+  
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 192 NSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPP 251
           +       L+ +  L  +  +DL              + +L  L+ L +    +  +   
Sbjct: 122 S-AHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY--R 175

Query: 252 PIVNISSISVLDLSSNQ 268
            I +   ++ L   S  
Sbjct: 176 GIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 33/187 (17%)

Query: 429 IGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFD 488
                SL  + L++ +++ L  + +    +++ + ++N     Y     ++ LS L    
Sbjct: 40  EAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLR 94

Query: 489 VSGNALTLKVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVP 547
           + G      V  D IP    L  L                       LDIS S   D++ 
Sbjct: 95  IMGK----DVTSDKIPNLSGLTSLT---------------------LLDISHSAHDDSIL 129

Query: 548 ARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDL 606
            +     P++  ++ S +    +I  L     L+++++  + +     +  F +L  +  
Sbjct: 130 TKI-NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188

Query: 607 SNNAFSG 613
            +    G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 32/179 (17%), Positives = 74/179 (41%), Gaps = 23/179 (12%)

Query: 320 NSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQ---LEGQIPRSF 376
           N +IP   ++F   ++  L  +S   +IT   A ++ S+  + L++     L G      
Sbjct: 14  NVNIP--DSTFKAYLNGLLGQSSTA-NIT--EAQMN-SLTYITLANINVTDLTG-----I 62

Query: 377 GRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLD 436
               N+++++++++  + + + I  +        LE   + G  +       +    SL 
Sbjct: 63  EYAHNIKDLTINNIHAT-NYNPISGL------SNLERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 437 SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT 495
            L +SH++    I + +  L  +  + LS N     +    L  L +L S ++  + + 
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 135 HLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSE 194
           +L  L + G          L  +  L  L++S +     I  ++  L K+  +DL  N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 195 LYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQL 245
           +   ++  L  L  L+ L++    +         I     L  L      +
Sbjct: 149 I--TDIMPLKTLPELKSLNIQFDGVHDY----RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
           + +   + + +    ++ L +L  L++S++     I   I  +  +  ID S N    +I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 890 PRSVSNLTFLNLLNLSYNYLSGEIPTS--TQLQSFDAS 925
              +  L  L  LN+ ++ +          +L    A 
Sbjct: 153 M-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 26/192 (13%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 456 LSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQ----LEKL 511
             +    +L  ++     + I  A ++ L    ++   +T       +   +    ++ L
Sbjct: 22  FKAYLNGLLGQSST----ANITEAQMNSLTYITLANINVTD------LTGIEYAHNIKDL 71

Query: 512 DLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRI-NGE 570
            + + H     P   LS   L  L I    +              L  L+ S+S   +  
Sbjct: 72  TINNIHATNYNPISGLSN--LERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSI 128

Query: 571 IPNLSKATGLRTVDLSSNNLSGTLPLISF--QLESIDLSNNAFSGSISPVLCNGMRGELQ 628
           +  ++    + ++DLS N     +  +    +L+S+++  +        +       +L 
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH-DYRGI--EDFP-KLN 184

Query: 629 VLNLENNSFSGE 640
            L   + +  G+
Sbjct: 185 QLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 29/243 (11%), Positives = 75/243 (30%), Gaps = 68/243 (27%)

Query: 671 SLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR 730
           +  +     L ++S +     + +  N L  + +     + D+     E   ++  L + 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGI--EYAHNIKDLTIN 74

Query: 731 SN-IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDC 789
           +    +      +  L++L+ L +   +++      I NLS +                 
Sbjct: 75  NIHATN---YNPISGLSNLERLRIMGKDVTSDK---IPNLSGL----------------- 111

Query: 790 SLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLV 849
                                       L           +D+S +     I  ++  L 
Sbjct: 112 --------------------------TSLTL---------LDISHSAHDDSILTKINTLP 136

Query: 850 ALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYL 909
            + S++LSYN     I   +  +  ++ ++   + + +     + +   LN L      +
Sbjct: 137 KVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

Query: 910 SGE 912
            G+
Sbjct: 194 GGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRL 699
            IPD    F       LG ++       +   + SLT + L   +++  +   +   + +
Sbjct: 16  NIPD--STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNI 68

Query: 700 VSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
             L ++    + +         S++  L +            L  LTSL +LD+ ++   
Sbjct: 69  KDLTINNIHAT-NYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 760 GAIPKCISNLSAMVTVD 776
            +I   I+ L  + ++D
Sbjct: 126 DSILTKINTLPKVNSID 142

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
           P+L     L  LD+S ++    I   + ++ K+  ++LS  G    I   L  L +L+ L
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSL 164

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGG 216
           ++  +    V +   +     L  L    
Sbjct: 165 NIQFDG---VHDYRGIEDFPKLNQLYAFS 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.0 bits (187), Expect = 9e-15
 Identities = 46/232 (19%), Positives = 82/232 (35%), Gaps = 12/232 (5%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL 219
              L       + +          L+ +++ +N  L V        L  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 220 GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWV 279
               +   A  +L +L+ L +S   + H      ++     +LD+  N       +    
Sbjct: 92  LLYIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN--INIHTIERNS 148

Query: 280 F-GLS-NLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIP-NWLASFSNLVHI 336
           F GLS   V L L  N  Q  I     N T L  L+LS N+    +P +     S  V +
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 337 SLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLS 388
            +    +    +  L NL   +      + +   ++P +  +L  L E SL+
Sbjct: 208 DISRTRIHSLPSYGLENLK-KLRARSTYNLK---KLP-TLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 28/242 (11%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS- 490
            ++   L      +  +   +  G   LE++ +S N +   +     +NL KL    +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 491 GNALTLKVGPDWIPP------FQLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGI 542
            N L       +I P        L+ L + +  +   P        Q     LDI  +  
Sbjct: 89  ANNLL------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ--KVLLDIQDNIN 140

Query: 543 QDTVPAR-FWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQ- 600
             T+    F   S +   L  + + I     +    T L  ++LS NN    LP   F  
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 601 ---LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLG 657
                 +D+S      S+       ++ +L+  +  N     ++P      + L   +L 
Sbjct: 201 ASGPVILDISRTRIH-SLPSYGLENLK-KLRARSTYNLK---KLPT-LEKLVALMEASLT 254

Query: 658 NN 659
             
Sbjct: 255 YP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 47/222 (21%), Positives = 73/222 (32%), Gaps = 27/222 (12%)

Query: 132 HFQHLNYLDLSGNSFGGGIPR--FLGSMGKLKYLNLSGAGFKGMIPHQ-LGNLSKLQYLD 188
            F  L  +++S N     I    F   + KL  + +  A     I  +   NL  LQYL 
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSN-LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSLAINSLSS-LRVLRLSG 242
           +          +  LP            LD+   N+        +   LS    +L L+ 
Sbjct: 111 ISNT------GIKHLPDVHKIHSLQKVLLDIQD-NINIHTIERNSFVGLSFESVILWLNK 163

Query: 243 CQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPV 301
             +   H           +    +N  ++   + + VF G S  V LD+       S+P 
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEE---LPNDVFHGASGPVILDISRTRIH-SLPS 219

Query: 302 G-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
             L+NL  LR            +P  L     L+  SL   S
Sbjct: 220 YGLENLKKLRARSTYN---LKKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 42/234 (17%), Positives = 72/234 (30%), Gaps = 43/234 (18%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS---- 337
            N + L       +  I  G       L  +++S ND    I      FSNL  +     
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEAD--VFSNLPKLHEIRI 86

Query: 338 LRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDIS 397
            ++N+L         NL  +++ L +S+  ++               + + D      I 
Sbjct: 87  EKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 398 EILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLS 457
                                   F  L+ +         L+L+ N I  +  S+  G  
Sbjct: 146 R---------------------NSFVGLSFE------SVILWLNKNGIQEIHNSAFNGTQ 178

Query: 458 SLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKL 511
             E  +  NN L+  L        S  V  D+S   +        +P + LE L
Sbjct: 179 LDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH------SLPSYGLENL 225

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 19/200 (9%)

Query: 151 PRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLS-LL 209
           P    ++  L+YL +S  G K +      +  +   LD+ +N  ++    +   GLS   
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156

Query: 210 QHLDLGGVNL----GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLS 265
             L L    +      AF      N      +       L+          S   +LD+S
Sbjct: 157 VILWLNKNGIQEIHNSAF------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 266 SNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIP 324
             +      + S+    L  L      +      +P  L+ L +L    L+Y     +  
Sbjct: 211 RTRI---HSLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPSHCCAFA 263

Query: 325 NWLASFSNLVHISLRSNSLQ 344
           NW    S L  I  +S   Q
Sbjct: 264 NWRRQISELHPICNKSILRQ 283

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 37/262 (14%), Positives = 74/262 (28%), Gaps = 63/262 (24%)

Query: 651 LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPES-LSNCNRLVSLNM-DGN 707
              L          +   +    G L  + + +N +   I     SN  +L  + +   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 708 QFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCIS 767
                             +L +    F          L +LQ L +    +         
Sbjct: 91  N-----------------LLYINPEAFQN--------LPNLQYLLISNTGIKHLPDVHKI 125

Query: 768 NLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLV 827
           +    V +D  + D        ++    +            +F+ +  + +         
Sbjct: 126 HSLQKVLLD--IQD--------NINIHTIE---------RNSFVGLSFESVI-------- 158

Query: 828 ALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIP-DSIGAMKSIEVIDFSNNQLS 886
             + L+KN    EI     +   L  LNLS N+    +P D         ++D S  ++ 
Sbjct: 159 --LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 887 ---EEIPRSVSNLTFLNLLNLS 905
                   ++  L   +  NL 
Sbjct: 216 SLPSYGLENLKKLRARSTYNLK 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 50/295 (16%), Positives = 100/295 (33%), Gaps = 53/295 (17%)

Query: 203 LPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVL 262
               +     +L   ++  A    +  N L+S+  +  +   +       I  + +++ L
Sbjct: 20  DDAFAETIKDNLKKKSVTDA----VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL 73

Query: 263 DLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSS 322
            L+ N+       +  +  L NL +L L  N  +  +   L++L  L+ L L +N   S 
Sbjct: 74  FLNGNKLTD----IKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI-SD 126

Query: 323 IPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNL 382
           I   L     L  + L +N +   IT  L+ L+  ++ L L   Q+   I      L  L
Sbjct: 127 ING-LVHLPQLESLYLGNNKIT-DITV-LSRLT-KLDTLSLEDNQIS-DIV-PLAGLTKL 180

Query: 383 REISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH 442
           + + LS       IS++                             +   K+LD L L  
Sbjct: 181 QNLYLSKNH----ISDL---------------------------RALAGLKNLDVLELFS 209

Query: 443 NSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLK 497
                   +    L     V  ++ +L   ++   +++       +V  +     
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSL---VTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 44/218 (20%), Positives = 76/218 (34%), Gaps = 23/218 (10%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
            +      ++ +  + +     I     +  +  +  L L+G     + P  L NL  L 
Sbjct: 40  VTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG 93

Query: 186 YLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQL 245
           +L L EN    V +LS L  L  L+ L L    +         +  L  L  L L   ++
Sbjct: 94  WLFLDENK---VKDLSSLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKI 146

Query: 246 DHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQN 305
                  +  ++ +  L L  NQ       +  + GL+ L  L L  N    S    L  
Sbjct: 147 TDI--TVLSRLTKLDTLSLEDNQISD----IVPLAGLTKLQNLYLSKN--HISDLRALAG 198

Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSL 343
           L +L  L+L   +  +   N  ++      +     SL
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 22/212 (10%)

Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRV 237
               ++    +L + S   V +      L+ +  +     ++         I  L ++  
Sbjct: 20  DDAFAETIKDNLKKKS---VTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVTK 72

Query: 238 LRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
           L L+G +L      P+ N+ ++  L L  N+       LS +  L  L  L L  N    
Sbjct: 73  LFLNGNKLTDI--KPLANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNGIS- 125

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
            I  GL +L  L  L L  N   + I   L+  + L  +SL  N +   I   LA L+  
Sbjct: 126 DIN-GLVHLPQLESLYLGNNKI-TDITV-LSRLTKLDTLSLEDNQIS-DIVP-LAGLT-K 179

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
           ++ L LS   +     R+   L NL  + L  
Sbjct: 180 LQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 56/289 (19%), Positives = 107/289 (37%), Gaps = 31/289 (10%)

Query: 431 HFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH-LANLSKLVSFDV 489
            F       L   S++  +      L+S+++++ +N+     +  +  +  L  +    +
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 75

Query: 490 SGNALTLKVGPDWIPPF----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT 545
           +GN LT       I P      L  L L    +        L +  L  L +  +GI D 
Sbjct: 76  NGNKLTD------IKPLANLKNLGWLFLDENKVKDLSSLKDLKK--LKSLSLEHNGISDI 127

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESI 604
                    PQL  L   N++I  +I  LS+ T L T+ L  N +S  +PL    +L+++
Sbjct: 128 NGL---VHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN 664
            LS N  S  +  +        L VL L +     +  +   N +    +   + +    
Sbjct: 184 YLSKNHIS-DLRALAGL---KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT- 238

Query: 665 LPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI 713
            P  +   G     +++ + L     E      + V++     +F G +
Sbjct: 239 -PEIISDDGDYEKPNVKWH-LPEFTNEVSFIFYQPVTIGKAKARFHGRV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 23/226 (10%)

Query: 555 PQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSG 613
            +    N     +  +    ++   +  +  +++++     +     +  + L+ N  + 
Sbjct: 24  AETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT- 81

Query: 614 SISPV--LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGS 671
            I P+  L N     L  L L+ N    ++     +   L+ L+L +N  + ++   L  
Sbjct: 82  DIKPLANLKN-----LGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVH 132

Query: 672 LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRS 731
           L  L  L+L  N ++      LS   +L +L+++ NQ S DI        + +  L L  
Sbjct: 133 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVPL--AGLTKLQNLYLSK 187

Query: 732 N-IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
           N I D      L  L +L +L+L             SNL    TV 
Sbjct: 188 NHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 56/349 (16%), Positives = 110/349 (31%), Gaps = 126/349 (36%)

Query: 564 NSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNG 622
            + I  +I +          +L   +++  +       ++ I  +N+             
Sbjct: 11  PTPIK-QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS------------- 56

Query: 623 MRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQK 682
                 + +++                 +  L L  N  T ++ P L +L +L  L L +
Sbjct: 57  -----DIKSVQGIQ----------YLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDE 99

Query: 683 NSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTEL 742
           N +   +  SL +  +L SL+++ N  S DI                            L
Sbjct: 100 NKVK-DL-SSLKDLKKLKSLSLEHNGIS-DING--------------------------L 130

Query: 743 CFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSF 802
             L  L+ L LG N ++      I+ LS +                              
Sbjct: 131 VHLPQLESLYLGNNKIT-----DITVLSRL------------------------------ 155

Query: 803 SDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFS 862
                         +L+          + L  N  S  +P+    L  L++L LS NH  
Sbjct: 156 -------------TKLDT---------LSLEDNQISDIVPLA--GLTKLQNLYLSKNH-- 189

Query: 863 GRIPD--SIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYL 909
             I D  ++  +K+++V++  + +   +     SNL   N +  +   L
Sbjct: 190 --ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 44/216 (20%), Positives = 70/216 (32%), Gaps = 32/216 (14%)

Query: 136 LNYLDLSGNSFG---GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
              ++    +       +P+          L+LS           L   ++L  L+L   
Sbjct: 12  HLEVNCDKRNLTALPPDLPK------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 193 SELYVDNLSWLP---GLSLLQHLDLGGVNLGKAFDWSL--AINSLSSLRVLRLSGCQLDH 247
                  L+ L     L +L  LDL    L      SL     +L +L VL +S  +L  
Sbjct: 66  E------LTKLQVDGTLPVLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGL-QN 305
                +  +  +  L L  N+      +   +      L  L L +N+    +P GL   
Sbjct: 115 LPLGALRGLGELQELYLKGNEL---KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170

Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           L +L  L L  N    +IP        L    L  N
Sbjct: 171 LENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 8/158 (5%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
               +L LS   L  F    ++  + ++ L+L   +     L    V   L  L  LDL 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----LTKLQVDGTLPVLGTLDLS 85

Query: 292 SNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL 351
            N  Q S+P+  Q L +L  LD+S+N   S     L     L  + L+ N L+    G L
Sbjct: 86  HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
                 +E L L++  L          L NL  + L +
Sbjct: 145 TPTP-KLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 32/195 (16%)

Query: 578 TGLRTVDLSSNNLSGTLPL-ISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636
                V+    NL+  LP  +      + LS N    + S          L  LNL+   
Sbjct: 10  ASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLY-TFSLATLMPYT-RLTQLNLDRAE 66

Query: 637 FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPE----S 692
            + ++         L  L+L +N    +LP    +L +LT+L +  N L+  +P      
Sbjct: 67  LT-KLQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122

Query: 693 LSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFDGQFPTELCF 744
           L     L  L + GN+    +P  +      +  L+L +N        + +G        
Sbjct: 123 LGE---LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG-------- 170

Query: 745 LTSLQILDLGYNNLS 759
           L +L  L L  N+L 
Sbjct: 171 LENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 42/187 (22%), Positives = 62/187 (33%), Gaps = 35/187 (18%)

Query: 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191
            +  L  L+L        +    G++  L  L+LS    +  +P     L  L  LD+  
Sbjct: 53  PYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 192 NSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPP 251
           N                L  L LG      A         L  L+ L L G +L    P 
Sbjct: 110 NR---------------LTSLPLG------ALR------GLGELQELYLKGNELKTLPPG 142

Query: 252 PIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
            +     +  L L++N     + + + +  GL NL  L L  N    +IP G      L 
Sbjct: 143 LLTPTPKLEKLSLANNNL---TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 311 HLDLSYN 317
              L  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
            K    L LS N +     ++L   + L ++ L    L     +  L  L  L   D+S 
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL---DLSH 86

Query: 492 NALT-LKVGPDWIPPFQLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDTVPA 548
           N L  L +    +P   L  LD+    L   P      L +  L  L +  + ++ T+P 
Sbjct: 87  NQLQSLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELK-TLPP 141

Query: 549 RFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISF---QLES 603
                +P+L  L+ +N+ +  E+P   L+    L T+ L  N+L  T+P   F    L  
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 604 IDLSNN 609
             L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 21/146 (14%)

Query: 627 LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS 686
             +L+L  N          M +  L  LNL     T       G+L  L  L L  N L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ 90

Query: 687 GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFDGQF 738
             +P        L  L++  N+ +  +P         +  L L+ N        +     
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP-- 146

Query: 739 PTELCFLTSLQILDLGYNNLSGAIPK 764
                    L+ L L  NNL+  +P 
Sbjct: 147 ------TPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 73/221 (33%)

Query: 304 QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDL 363
             + S   ++    +  +++P                            +L     +L L
Sbjct: 7   SKVASHLEVNCDKRNL-TALP---------------------------PDLPKDTTILHL 38

Query: 364 SSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFG 423
           S   L      +      L +++L   +    ++++                    ++ G
Sbjct: 39  SENLLYTFSLATLMPYTRLTQLNLDRAE----LTKL--------------------QVDG 74

Query: 424 HLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSK 483
            L         L +L LSHN +  L P     L +L  + +S N L   L    L  L +
Sbjct: 75  TLPV-------LGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGE 125

Query: 484 LVSFDVSGNALTLKVGPDWIPP--F----QLEKLDLQSCHL 518
           L    + GN L        +PP       +LEKL L + +L
Sbjct: 126 LQELYLKGNELKT------LPPGLLTPTPKLEKLSLANNNL 160

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 41/236 (17%), Positives = 74/236 (31%), Gaps = 40/236 (16%)

Query: 160 LKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLP-----GLSLLQHLDL 214
            + L L     + +  H   NL  +  + +  +       L  L       LS + H+++
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-----VTLQQLESHSFYNLSKVTHIEI 87

Query: 215 GGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSL 274
                    D   A+  L  L+ L +    L  F                          
Sbjct: 88  RNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFPD------------------------ 122

Query: 275 VLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQNLTS-LRHLDLSYNDFNSSIPNWLASFSN 332
            L+ V+       L++  N +  SIPV   Q L +    L L  N F +S+  +  + + 
Sbjct: 123 -LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTK 180

Query: 333 LVHISLRSNSLQGSI-TGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISL 387
           L  + L  N     I       + +   +LD+S   +     +    L  L   + 
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 41/243 (16%), Positives = 73/243 (30%), Gaps = 38/243 (15%)

Query: 232 LSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDL 290
             S + L+L    L         N+ +IS + +S +       + S  F  LS + ++++
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID--VTLQQLESHSFYNLSKVTHIEI 87

Query: 291 GSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPN--WLASFSNLVHISLRSNSLQGSI 347
            +      I    L+ L  L+ L +         P+   + S      + +  N    SI
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 348 -TGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSC 406
                  L      L L +      +         L  + L+  K    I +        
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK-------- 197

Query: 407 ISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSN 466
                          FG + S          L +S  S++ L    L  L  L  +  + 
Sbjct: 198 -------------DAFGGVYS------GPSLLDVSQTSVTALPSKGLEHLKEL--IARNT 236

Query: 467 NTL 469
            TL
Sbjct: 237 WTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 24/204 (11%)

Query: 570 EIPNLSKATGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRG 625
            IP+L      +T+ L   +L  T+P  +F     +  I +S +     +       +  
Sbjct: 25  RIPSLP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS- 80

Query: 626 ELQVLNLENNSFSGEIP-DCWMNFLYLRVLNLGNNNFTGNLPP--SLGSLGSLTLLHLQK 682
           ++  + + N      I  D       L+ L + N       P    + S     +L +  
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITD 139

Query: 683 NSLSGRIPESL--SNCNRLVSLNMDGNQFSGDIPTWIGEKF--SSMVILNLRSNIFDGQF 738
           N     IP +     CN  ++L +  N F+  +  +    F  + +  + L  N +    
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA---FNGTKLDAVYLNKNKYLTVI 195

Query: 739 PTELCF---LTSLQILDLGYNNLS 759
             +  F    +   +LD+   +++
Sbjct: 196 DKD-AFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 31/215 (14%), Positives = 72/215 (33%), Gaps = 36/215 (16%)

Query: 132 HFQHLNYLDLSGNSFGGGIPR--FLGSMGKLKYLNLSGAGFKGMIPHQ-LGNLSKLQYLD 188
           +  +++ + +S +     +    F   + K+ ++ +        I    L  L  L++L 
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF 248
           +         +L+ +    +   L++           S+ +N+   L    L+       
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT----SIPVNAFQGLCNETLT------- 160

Query: 249 HPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQNLT 307
                        L L +N F   + V  + F  + L  + L  N +   I       + 
Sbjct: 161 -------------LKLYNNGF---TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 308 S-LRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           S    LD+S     +++P+      +L  +  R+ 
Sbjct: 205 SGPSLLDVSQTSV-TALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 46/276 (16%), Positives = 87/276 (31%), Gaps = 78/276 (28%)

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH---LANLSKLVSFDVS 490
           S  +L L    +  +   +   L ++ R+ +S +     L ++      NLSK+   ++ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID---VTLQQLESHSFYNLSKVTHIEIR 88

Query: 491 GN-ALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPAR 549
               LT       I P  L++L                                      
Sbjct: 89  NTRNLTY------IDPDALKEL-------------------------------------- 104

Query: 550 FWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNN 609
                P L FL   N+ +    P+L+K                           +++++N
Sbjct: 105 -----PLLKFLGIFNTGLK-MFPDLTKVYSTD------------------IFFILEITDN 140

Query: 610 AFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL 669
            +  SI      G+  E   L L NN F+  +     N   L  + L  N +   +    
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 670 --GSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLN 703
             G     +LL + + S++    + L +   L++ N
Sbjct: 200 FGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 40/239 (16%), Positives = 76/239 (31%), Gaps = 49/239 (20%)

Query: 282 LSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIP-NWLASFSNLVHISLR 339
             +   L L     + +IP     NL ++  + +S +     +  +   + S + HI +R
Sbjct: 30  PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 340 SNSLQGSI-TGFLANLSASIEVLDLSSQQLEGQIP--RSFGRLCNLREISLSDVKMSQDI 396
           +      I    L  L   ++ L + +  L+   P             + ++D      I
Sbjct: 89  NTRNLTYIDPDALKELP-LLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL 456
                                    F  L ++        +L L +N  +  +       
Sbjct: 147 PV---------------------NAFQGLCNE------TLTLKLYNNGFTS-VQGYAFNG 178

Query: 457 SSLERVVLSNNTLKGYLSEIH---LANL-SKLVSFDVSGNALTLKVGPDWIPPFQLEKL 511
           + L+ V L+ N    YL+ I       + S     DVS  ++T       +P   LE L
Sbjct: 179 TKLDAVYLNKNK---YLTVIDKDAFGGVYSGPSLLDVSQTSVT------ALPSKGLEHL 228

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 28/263 (10%), Positives = 77/263 (29%), Gaps = 65/263 (24%)

Query: 651 LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPE-SLSNCNRLVSLNMDGNQ 708
            + L L   +    +P  +  +L +++ +++  +    ++   S  N +++  + +   +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 709 FSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIP--KCI 766
                            +  +  +            L  L+ L +    L    P    +
Sbjct: 92  N----------------LTYIDPDALKE--------LPLLKFLGIFNTGLK-MFPDLTKV 126

Query: 767 SNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYL 826
            +      ++  + D        + Y + +P   +F                    +   
Sbjct: 127 YSTDIFFILE--ITD--------NPYMTSIP-VNAFQG------------------LCNE 157

Query: 827 VALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSI--GAMKSIEVIDFSNNQ 884
              + L  N F+  +     +   L ++ L+ N +   I      G      ++D S   
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 885 LSE---EIPRSVSNLTFLNLLNL 904
           ++    +    +  L   N   L
Sbjct: 217 VTALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 30/249 (12%), Positives = 73/249 (29%), Gaps = 61/249 (24%)

Query: 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNI 733
           S   L L +  L      + SN   +  + +  +                + +  L S+ 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID----------------VTLQQLESHS 75

Query: 734 FDGQFPTELCFLTSLQILDLGYNNLSGAIPK-CISNLSAMVTVDYPLGDTHPGITDCSLY 792
           F          L+ +  +++        I    +  L  +  +          I +  L 
Sbjct: 76  FYN--------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG---------IFNTGL- 117

Query: 793 RSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEV-TDLVA- 850
               P                            +  +++++ N +   IPV     L   
Sbjct: 118 -KMFPDLTKVYS-------------------TDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 851 LRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSV-SNL-TFLNLLNLSYNY 908
             +L L  N F+  +         ++ +  + N+    I +     + +  +LL++S   
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 909 LSGEIPTST 917
           ++  +P+  
Sbjct: 217 VT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 20/188 (10%), Positives = 48/188 (25%), Gaps = 53/188 (28%)

Query: 578 TGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSF 637
                  ++  ++   +P +    +++ L                         + +++F
Sbjct: 11  HQEEDFRVTCKDIQ-RIPSLPPSTQTLKLIETHLR------------------TIPSHAF 51

Query: 638 SGEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIP-ESLSN 695
           S            +  + +  +     L   S  +L  +T + ++       I  ++L  
Sbjct: 52  SN--------LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103

Query: 696 CNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGY 755
              L  L +         P     K  S                          IL++  
Sbjct: 104 LPLLKFLGIFNTGLK-MFPD--LTKVYS---------------------TDIFFILEITD 139

Query: 756 NNLSGAIP 763
           N    +IP
Sbjct: 140 NPYMTSIP 147

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 22/217 (10%)

Query: 154 LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLD 213
              +      NL       ++      LS +Q  +   +    + +L+ +   + L+ L 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS---NIQSLAGMQFFTNLKELH 69

Query: 214 LGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNS 273
           L    +         +  L+ L  L ++  +        + N++ I    LS    D N 
Sbjct: 70  LSHNQISDLS----PLKDLTKLEELSVNRNR--------LKNLNGIPSACLSRLFLDNNE 117

Query: 274 LV-LSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSN 332
           L     +  L NL  L + +N  + SI   L  L+ L  LDL  N+  ++    L     
Sbjct: 118 LRDTDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEI-TNTGG-LTRLKK 173

Query: 333 LVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE 369
           +  I L           +   L  +  V D   + + 
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 42/279 (15%), Positives = 96/279 (34%), Gaps = 30/279 (10%)

Query: 438 LFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLK 497
                  I+ + P    GL++  +  L   ++      +    LS + +F+   + +   
Sbjct: 2   SIQRPTPINQVFP--DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-- 54

Query: 498 VGPDWIPPFQ----LEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEA 553
                +   Q    L++L L    +    P   L++  L  L ++R+ +++         
Sbjct: 55  ----SLAGMQFFTNLKELHLSHNQISDLSPLKDLTK--LEELSVNRNRLKNLNG----IP 104

Query: 554 SPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFS 612
           S  L  L   N+ +  +  +L     L  + + +N L   + L    +LE +DL  N  +
Sbjct: 105 SACLSRLFLDNNELR-DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT 163

Query: 613 GSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSL 672
            +   +       ++  ++L         P  +   LY+    + + +     P  + + 
Sbjct: 164 -NTGGLTRL---KKVNWIDLTGQKCV-NEPVKYQPELYI-TNTVKDPDGRWISPYYISNG 217

Query: 673 GSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711
           GS     +    L     E     +  +++      F G
Sbjct: 218 GSYVDGCV-LWELPVYTDEVSYKFSEYINVGETEAIFDG 255

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 302 GLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL 361
               L +    +L        +       S + + +  ++++Q S+ G +   + +++ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFT-NLKEL 68

Query: 362 DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKI 421
            LS  Q+   +      L  L E+S++  +    +  +  I S+C    L    +   ++
Sbjct: 69  HLSHNQIS-DLS-PLKDLTKLEELSVNRNR----LKNLNGIPSAC----LSRLFLDNNEL 118

Query: 422 FGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANL 481
               T  + H K+L+ L + +N +  +    LG LS LE + L  N +    +   L  L
Sbjct: 119 RD--TDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT---NTGGLTRL 171

Query: 482 SKLVSFDVSGNALTLK 497
            K+   D++G     +
Sbjct: 172 KKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 40/269 (14%), Positives = 82/269 (30%), Gaps = 50/269 (18%)

Query: 229 INSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYL 288
              L++     L    +          +S +   +  ++        L+ +   +NL  L
Sbjct: 15  DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQS----LAGMQFFTNLKEL 68

Query: 289 DLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSIT 348
            L  N  Q S    L++LT L  L ++ N    ++       + L  + L +N L+    
Sbjct: 69  HLSHN--QISDLSPLKDLTKLEELSVNRNRL-KNLNG--IPSACLSRLFLDNNELR-DTD 122

Query: 349 GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCIS 408
             L +L  ++E+L + + +L+  I    G L  L  + L       +I+           
Sbjct: 123 S-LIHLK-NLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHG----NEITNT--------- 165

Query: 409 DRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNT 468
                               +   K ++ + L+              L     V   +  
Sbjct: 166 ------------------GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

Query: 469 LKGYLSEIHLANLSKLVSFDVSGNALTLK 497
               +S  +++N    V   V        
Sbjct: 208 W---ISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 23/221 (10%)

Query: 130 LLHFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
           +  F +L  L LS N     I     L  + KL+ L+++    K +        + L  L
Sbjct: 59  MQFFTNLKELHLSHNQ----ISDLSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRL 111

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
            L  N    + +   L  L  L+ L +    L       + +  LS L VL L G ++ +
Sbjct: 112 FLDNNE---LRDTDSLIHLKNLEILSIRNNKLKSI----VMLGFLSKLEVLDLHGNEITN 164

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT 307
                +  +  ++ +DL+  +     +       ++N V       D +   P  + N  
Sbjct: 165 T--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKD----PDGRWISPYYISNGG 218

Query: 308 SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSIT 348
           S     + +             FS  +++        G++T
Sbjct: 219 SYVDGCVLWEL-PVYTDEVSYKFSEYINVGETEAIFDGTVT 258

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 38/235 (16%), Positives = 74/235 (31%), Gaps = 49/235 (20%)

Query: 669 LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILN 728
              L +    +L K S++     S    + + + N D +     +     + F+++  L+
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAGM--QFFTNLKELH 69

Query: 729 LRSN-IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787
           L  N I D    + L  LT L+ L +  N L       ++ + +       L +    + 
Sbjct: 70  LSHNQISD---LSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNE--LR 119

Query: 788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTD 847
           D                 +         K LE          + +  N     I   +  
Sbjct: 120 DTD--------------SLIHL------KNLEI---------LSIRNNKLK-SIV-MLGF 148

Query: 848 LVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLL 902
           L  L  L+L  N  +      +  +K +  ID +  +   E  +    L   N +
Sbjct: 149 LSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 15/81 (18%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI 889
            +L K + +  +  +  +L  +++ N   ++    +   +    +++ +  S+NQ+S+  
Sbjct: 24  QNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQISDLS 79

Query: 890 PRSVSNLTFLNLLNLSYNYLS 910
           P  + +LT L  L+++ N L 
Sbjct: 80  P--LKDLTKLEELSVNRNRLK 98

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 9e-13
 Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 43/227 (18%)

Query: 132 HFQHLNYLDLSGN---SFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
            F  L  LDLS     +   G  + L     L  L L+G   + +       LS LQ L 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGG-----VNLGKAFDWSLAINSLSSLRVL 238
            VE       NL+ L       L  L+ L++         L + F       +L++L  L
Sbjct: 107 AVET------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS------NLTNLEHL 154

Query: 239 RLSGCQLDHFHPPPIVNISSISV----LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSND 294
            LS  ++   +   +  +  + +    LDLS N  +    +    F    L  L L +N 
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEIRLKELALDTNQ 211

Query: 295 FQGSIPVG-LQNLTSLRHLDLSYNDFN---SSIP---NWLASFSNLV 334
            + S+P G    LTSL+ + L  N ++     I     WL   S   
Sbjct: 212 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 257

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 40/241 (16%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
            S + L LS   L H       +   + VLDLS  +      +    +  LS+L  L L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILT 84

Query: 292 SNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLAS-FSNLVHISLRSNSLQGSIT- 348
            N  Q S+ +G    L+SL+ L     +  +S+ N+       L  +++  N +Q     
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 349 GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCIS 408
            + +NL+ ++E LDLSS +++         L  +  ++LS       ++ I         
Sbjct: 143 EYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--------- 192

Query: 409 DRLESWDMTGCKIFGHLTSQIGHFK--SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSN 466
                              Q G FK   L  L L  N +  +       L+SL+++ L  
Sbjct: 193 -------------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

Query: 467 N 467
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 49/231 (21%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
            IP  L    S ++LDLS+N           SF  L  + L    +Q    G   +LS  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-H 77

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           +  L L+   ++     +F  L +L+++   +                     LE+    
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVE----------------TNLASLEN---- 117

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLI-PSSLGGLSSLERVVLSNNTLKGYLSEI 476
                GHL        +L  L ++HN I     P     L++LE + LS+N ++  +   
Sbjct: 118 --FPIGHLK-------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167

Query: 477 HLANLSKL----VSFDVSGNALTLKVGPDWIPP-----FQLEKLDLQSCHL 518
            L  L ++    +S D+S N +       +I P      +L++L L +  L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN------FIQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 53/259 (20%), Positives = 84/259 (32%), Gaps = 62/259 (23%)

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
           S  +L LS N +  L   S      L+ + LS   ++  + +    +LS L +  ++GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 494 LTLKVGPDWIPP--F----QLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDT 545
           +        +    F     L+KL     +L     FP   L    L  L+++ + IQ  
Sbjct: 88  IQS------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--LKELNVAHNLIQSF 139

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESID 605
                       YF N +N               L  +DLSSN +               
Sbjct: 140 KLPE--------YFSNLTN---------------LEHLDLSSNKIQ-------------S 163

Query: 606 LSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNL 665
           +            L   M      L+L  N  +  I       + L+ L L  N    ++
Sbjct: 164 IYCTDLRV-----LHQ-MPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SV 215

Query: 666 PP-SLGSLGSLTLLHLQKN 683
           P      L SL  + L  N
Sbjct: 216 PDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 53/267 (19%), Positives = 83/267 (31%), Gaps = 72/267 (26%)

Query: 651 LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESL-SNCNRLVSLNMDGNQ 708
            + L+L  N    +L   S  S   L +L L +  +   I +    + + L +L + GN 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 709 FSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISN 768
                              +L    F G        L+SLQ L     NL+      I +
Sbjct: 88  IQ-----------------SLALGAFSG--------LSSLQKLVAVETNLASLENFPIGH 122

Query: 769 LSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVA 828
           L  +  ++  +      I            P  FS+                     L  
Sbjct: 123 LKTLKELN--VAHNL--IQS-------FKLPEYFSN---------------------LTN 150

Query: 829 L--IDLSKNNFSGEIPVEVTD-LVALR----SLNLSYNHFSGRIPDSIGAMKSIEVIDFS 881
           L  +DLS N     I       L  +     SL+LS N  +  I         ++ +   
Sbjct: 151 LEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALD 208

Query: 882 NNQLSEEIPRSV-SNLTFLNLLNLSYN 907
            NQL   +P  +   LT L  + L  N
Sbjct: 209 TNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 54/272 (19%), Positives = 95/272 (34%), Gaps = 75/272 (27%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
            NL  S + LDLS   L      SF     L+ + LS  ++ Q I +    + S     L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIED--GAYQS--LSHL 78

Query: 412 ESWDMTG-------CKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVL 464
            +  +TG          F  L+S       L  L     +++ L    +G L +L+ + +
Sbjct: 79  STLILTGNPIQSLALGAFSGLSS-------LQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 465 SNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPP--FQ-LEKLDLQSCHLGPT 521
           ++N ++ +    + +NL+ L   D+S N +        I     + L ++ L +  L   
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLHQMPLLNLSL--- 182

Query: 522 FPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLR 581
                LS N + ++                                    P   K   L+
Sbjct: 183 ----DLSLNPMNFIQ-----------------------------------PGAFKEIRLK 203

Query: 582 TVDLSSNNLSGTLPLISFQ----LESIDLSNN 609
            + L +N L  ++P   F     L+ I L  N
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 39/165 (23%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 184 LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGK----AFDWSLAINSLSSLRVLR 239
              LDL  N+   +        L+ L  L L   +L      AF        + +LR L 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV------PVPNLRYLD 94

Query: 240 LSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGS 298
           LS   L         ++ ++ VL L +N      +V    F  ++ L  L L  N     
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQIS-R 150

Query: 299 IPVG----LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLR 339
            PV        L  L  LDLS N         L      V   L 
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 44/217 (20%), Positives = 67/217 (30%), Gaps = 30/217 (13%)

Query: 579 GLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638
               +  S   L      +      +DLS+N  S  +           L  L L +N  +
Sbjct: 19  ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 639 GEIPDCWMNFLY-LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPE-SLSN 695
             I       +  LR L+L +N+    L       L +L +L L  N +   +   +  +
Sbjct: 78  -FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFED 134

Query: 696 CNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGY 755
             +L  L +  NQ                 I      +           L  L +LDL  
Sbjct: 135 MAQLQKLYLSQNQ-----------------ISRFPVELIKD-----GNKLPKLMLLDLSS 172

Query: 756 NNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLY 792
           N L       +  L A V     L +  P   DC LY
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN-PLECDCKLY 208

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 43/197 (21%), Positives = 63/197 (31%), Gaps = 37/197 (18%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNW-LASFSNLVHISLRSNSLQGSITGFLANLSA 356
           ++P  L   +    LDLS+N+ +     W     +NL  + L  N L    +     +  
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP- 88

Query: 357 SIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDM 416
           ++  LDLSS  L       F  L  L  + L +      I  +                 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH----IVVVDR--------------- 129

Query: 417 TGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIP---SSLGGLSSLERVVLSNNTLKGYL 473
                F  +         L  L+LS N IS            L  L  + LS+N LK  L
Sbjct: 130 ---NAFEDMA-------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KL 178

Query: 474 SEIHLANLSKLVSFDVS 490
               L  L   V   + 
Sbjct: 179 PLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 34/195 (17%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPR-SFGRLCNLREISLSDVKMSQDISEI-LDIFSSCISD 409
            +L +   +LDLS   L       +  RL NL  + LS       ++ I  + F    + 
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH----NHLNFISSEAFVPVPN- 89

Query: 410 RLESWDMTGCKI-------FGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERV 462
            L   D++   +       F  L +       L+ L L +N I  +  ++   ++ L+++
Sbjct: 90  -LRYLDLSSNHLHTLDEFLFSDLQA-------LEVLLLYNNHIVVVDRNAFEDMAQLQKL 141

Query: 463 VLSNNTLKGYLSE---IHLANLSKLVSFDVSGNALT-LKVGP-DWIPPFQLEKLDLQ--- 514
            LS N +              L KL+  D+S N L  L +     +P +    L L    
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200

Query: 515 ---SCHLGPTFPFWL 526
               C L   F  W 
Sbjct: 201 LECDCKLYQLFSHWQ 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 17/171 (9%)

Query: 570 EIP-NLSKATGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMR 624
            +P +L   T    +DLS NNLS      +      L S+ LS+N  +  IS      + 
Sbjct: 32  NVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKN 683
             L+ L+L +N         + +   L VL L NN+    +   +   +  L  L+L +N
Sbjct: 89  -NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 684 SLSGRIPE----SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR 730
            +S R P       +   +L+ L++  N+    +P    +K  + V   L 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 32/142 (22%)

Query: 134 QHLNYLDLSGN---SFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLV 190
            +L YLDLS N   +    +      +  L+ L L       +  +   ++++LQ L L 
Sbjct: 88  PNLRYLDLSSNHLHTLDEFL---FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 191 ENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHP 250
           +N       +S  P                +        N L  L +L LS  +L     
Sbjct: 145 QN------QISRFP---------------VELIK---DGNKLPKLMLLDLSSNKLKKLPL 180

Query: 251 PPIVNISSISV--LDLSSNQFD 270
             +  + +     L L +N  +
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 830 IDLSKNNFSGEIPVEV-TDLVALRSLNLSYNHFSGRIPDSI-GAMKSIEVIDFSNNQLSE 887
           + LS N+ +  I  E    +  LR L+LS NH    + + +   ++++EV+   NN +  
Sbjct: 69  LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV 126

Query: 888 EIPRSV-SNLTFLNLLNLSYNYLSGEIPTST 917
            + R+   ++  L  L LS N +S   P   
Sbjct: 127 -VDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 58/330 (17%), Positives = 105/330 (31%), Gaps = 58/330 (17%)

Query: 129 SLLHFQHLNYLDLSGNSFGGG----IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKL 184
            LL    +  + LSGN+ G      +   + S   L+    S      +       L  L
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 185 QYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLA--INSLSSLRVLRLSG 242
                          L  L     L  + L     G      L   ++  + L  L L  
Sbjct: 87  ---------------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131

Query: 243 CQL-------------DHFHPPPIVNISSISVLDLSSNQFDQNSLV-LSWVFGL-SNLVY 287
             L             +        N   +  +    N+ +  S+   +  F     L  
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 288 LDLGSNDF-----QGSIPVGLQNLTSLRHLDLSYNDFN----SSIPNWLASFSNLVHISL 338
           + +  N       +  +  GL     L+ LDL  N F     S++   L S+ NL  + L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 339 RSNSL--QGSI---TGFLANLSASIEVLDLSSQQLEGQIPRSFGR-----LCNLREISLS 388
               L  +G+      F    +  ++ L L   ++E    R+        + +L  + L+
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

Query: 389 DVKMSQD---ISEILDIFSSCISDRLESWD 415
             + S++   + EI ++FS+     L+  D
Sbjct: 312 GNRFSEEDDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 57/311 (18%), Positives = 93/311 (29%), Gaps = 59/311 (18%)

Query: 508 LEKLDLQSCHLGP----TFPFWLLSQNVLGYLDISRSGIQD---TVPARFWEASPQLYFL 560
           +E   L+   +      +    LL  + +  + +S + I        +    +   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 561 NFSN---SRINGEIPN--------LSKATGLRTVDLSSNNLS--GTLPLISF-----QLE 602
            FS+    R+  EIP         L K   L TV LS N        PLI F      LE
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 603 SIDLSNNAFS----GSISPVLCNGMRGE-------LQVLNLENNSFSGEIPDCWMNFL-- 649
            + L NN         I+  L      +       L+ +    N         W      
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 650 --YLRVLNLGNNNFT-----GNLPPSLGSLGSLTLLHLQKNSLSGR----IPESLSNCNR 698
              L  + +  N          L   L     L +L LQ N+ +      +  +L +   
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 699 LVSLNMDGNQFSGDIPTWIGE-----KFSSMVILNLRSNIFDGQFPTELC-----FLTSL 748
           L  L ++    S      + +     +   +  L L+ N  +      L       +  L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 749 QILDLGYNNLS 759
             L+L  N  S
Sbjct: 306 LFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 6e-10
 Identities = 65/375 (17%), Positives = 115/375 (30%), Gaps = 76/375 (20%)

Query: 382 LREISLSDVKMS-QDISEILDIFSSCISDRLESWDMTGCKI----FGHLTSQIGHFKSLD 436
           +   SL    ++ +D   +  +     S  ++   ++G  I       L+  I   K L+
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDS--VKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 437 SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTL 496
               S      +       L  L + +L    L                +  +S NA   
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH---------------TVRLSDNAFGP 108

Query: 497 KVGPDWIPPF-----QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFW 551
               + +  F      LE L L +  LGP                I+   +Q+    +  
Sbjct: 109 T-AQEPLIDFLSKHTPLEHLYLHNNGLGPQ-----------AGAKIA-RALQELAVNKKA 155

Query: 552 EASPQLYFLNFSNSRINGE-IPNLSKA----TGLRTVDLSSNNLS--GTLPLISF----- 599
           + +P L  +    +R+    +   +K       L TV +  N +   G   L+       
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 600 -QLESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLENNSFSGE--------IPDCWMNF 648
            +L+ +DL +N F+   S  L   ++    L+ L L +   S                  
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL--EN 273

Query: 649 LYLRVLNLGNNNFTGN----LPPSLGS-LGSLTLLHLQKNSLS------GRIPESLSNCN 697
           + L+ L L  N    +    L   +   +  L  L L  N  S        I E  S   
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333

Query: 698 RLVSLNMDGNQFSGD 712
           R     +D  +   D
Sbjct: 334 RGELDELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 8e-09
 Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 42/245 (17%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGG----GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
           +  +LL    L+ + LS N+FG      +  FL     L++L L   G     P     +
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKI 142

Query: 182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGK--AFDWSLAINSLSSLRVLR 239
           ++     L E +               L+ +  G   L      +W+    S   L  ++
Sbjct: 143 ARA----LQELA-----VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193

Query: 240 LSGCQLDHFHPPPIV-----NISSISVLDLSSNQF-DQNSLVLSWVF-GLSNLVYLDLGS 292
           +    +       ++         + VLDL  N F    S  L+       NL  L L  
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253

Query: 293 NDFQGSIPVGLQNL---------TSLRHLDLSYNDFN----SSIPNWLAS-FSNLVHISL 338
                    G   +           L+ L L YN+       ++   +     +L+ + L
Sbjct: 254 CLLS---ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 339 RSNSL 343
             N  
Sbjct: 311 NGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 42/338 (12%), Positives = 100/338 (29%), Gaps = 81/338 (23%)

Query: 627 LQVLNLENNSFSGE----IPDCWMNFLYLRVLNLGNNNFTGN----LPPSLGSLGSLTLL 678
           ++  +L+ ++ + E    +    +    ++ + L  N         L  ++ S   L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 679 HLQKNSLSGR----------IPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMV--- 725
                               + ++L  C +L ++ +  N F       + +  S      
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 726 ILNLRSN-------------IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAM 772
            L L +N             + +     +      L+ +  G N L       +   +  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE---NGSMKEWAKT 182

Query: 773 VTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDL 832
                     H  +    + ++ + RP      + +     +  EL+          +DL
Sbjct: 183 FQS-------HRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQ--ELKV---------LDL 223

Query: 833 SKNNFSGE----IPVEVTDLVALRSLNLSYNHFSGRIPDSIGAM-----------KSIEV 877
             N F+      + + +     LR L L+    S     + GA              ++ 
Sbjct: 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS-----ARGAAAVVDAFSKLENIGLQT 278

Query: 878 IDFSNNQLSEE----IPRSV-SNLTFLNLLNLSYNYLS 910
           +    N++  +    +   +   +  L  L L+ N  S
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 55/390 (14%), Positives = 107/390 (27%), Gaps = 103/390 (26%)

Query: 308 SLRHLDLSYNDFNS----SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDL 363
           S+    L  +   +    S+   L    ++  I L  N++                    
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--GTEAARW----------- 51

Query: 364 SSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFG 423
                   +  +     +L     SD+   +   EI +                  +   
Sbjct: 52  --------LSENIASKKDLEIAEFSDIFTGRVKDEIPE----------------ALR--- 84

Query: 424 HLTSQIGHFKSLDSLFLSHNSISG----LIPSSLGGLSSLERVVLSNN------------ 467
            L   +     L ++ LS N+        +   L   + LE + L NN            
Sbjct: 85  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 468 TLKGYLSEIHLANLSKLVSFDVSGNALT----------LKVGPDWIPPFQLEKLDLQSCH 517
            L+         N   L S     N L            +          L  + +    
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR------LLHTVKMVQNG 198

Query: 518 LGPTFPFWLLSQ-----NVLGYLDISRSGIQD---TVPARFWEASPQLYFLNFSNSRING 569
           + P     LL +       L  LD+  +       +  A   ++ P L  L  ++  ++ 
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 570 E-IPNLSKA------TGLRTVDLSSNNLS--GTLPLISF------QLESIDLSNNAFS-- 612
                +  A       GL+T+ L  N +       L +        L  ++L+ N FS  
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

Query: 613 GSISPVLCNGM--RGELQVLNLENNSFSGE 640
             +   +      RG  ++  L++     +
Sbjct: 319 DDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.2 bits (169), Expect = 4e-12
 Identities = 70/489 (14%), Positives = 143/489 (29%), Gaps = 67/489 (13%)

Query: 129 SLLHFQHLNYLDLSGNSFGG----GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLG-NLSK 183
            L    H    +L  + +GG     I     S   L+ + L            +  +   
Sbjct: 72  ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN 131

Query: 184 LQYLDLVENSELYVDNLSWL-PGLSLLQHLDLGGVNLGKAFDWSLA--INSLSSLRVLRL 240
            + L L        D L+ +      L+ LDL   ++       L+   ++ +SL  L +
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191

Query: 241 SGCQLDHFHPPPIVNIS----SISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGS---- 292
           S           +  +     ++  L L+     +    L  +     L  L  G     
Sbjct: 192 SCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL--LQRAPQLEELGTGGYTAE 248

Query: 293 --NDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQG-SITG 349
              D    + V L     LR L   ++   + +P   +  S L  ++L   ++Q   +  
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308

Query: 350 FLANLSASIEVLDLSSQQLEGQIPRSFGRLC-NLREISLSDVKMSQDISEILDIFSSCIS 408
            L      ++ L +    +E          C +LRE+ +   +       +       ++
Sbjct: 309 LLCQCP-KLQRLWVLD-YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA------LT 360

Query: 409 DRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSIS--GL--IPSSLGGLSSLERVVL 464
           ++              L S       L+S+      ++   L  I  +   ++     ++
Sbjct: 361 EQ-------------GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 465 SNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPF 524
                     E        +V                      L +L L        F +
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKD-----------------LRRLSLSGLLTDKVFEY 450

Query: 525 WLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRI--NGEIPNLSKATGLRT 582
                  +  L ++ +G  D            L  L   +        + N SK   +R+
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 583 VDLSSNNLS 591
           + +SS ++S
Sbjct: 511 LWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 61/380 (16%), Positives = 124/380 (32%), Gaps = 49/380 (12%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
              +      LN   L+       + R +     LK L L+ A     +   L    +L+
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLE 238

Query: 186 YLDL-----VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRL 240
            L           ++Y      L G   L+ L  G  +   A+  ++  +  S L  L L
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVY-SVCSRLTTLNL 296

Query: 241 SGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIP 300
           S              + S  ++ L                    L  L +        + 
Sbjct: 297 SYAT-----------VQSYDLVKLLCQ--------------CPKLQRLWVLDYIEDAGLE 331

Query: 301 VGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS-ASIE 359
           V       LR L +  ++     PN   +   LV +S+    L+ S+  F   ++ A++ 
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALI 390

Query: 360 VLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGC 419
            +  +   +         RLC +   +   + +         I   C    L    ++G 
Sbjct: 391 TIARNRPNMTRF------RLCIIEPKAPDYLTLEPLDIGFGAIVEHC--KDLRRLSLSGL 442

Query: 420 ---KIFGHLTSQIGHFKSLDSLFLSHNSISGL-IPSSLGGLSSLERVVLSNNTLKGYLSE 475
              K+F ++ +   + K ++ L ++    S L +   L G  SL ++ + +         
Sbjct: 443 LTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499

Query: 476 IHLANLSKLVSFDVSGNALT 495
            + + L  + S  +S  +++
Sbjct: 500 ANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 9e-05
 Identities = 36/324 (11%), Positives = 88/324 (27%), Gaps = 58/324 (17%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSG-----AGFKGMIP---- 175
            ++ +L   + L  L    ++    +P       +L  LNLS           ++     
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315

Query: 176 ----------------HQLGNLSKLQYLDLVENSELYVDNLSWL---------PGLSLLQ 210
                                   L+ L +  +    ++    L          G   L+
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375

Query: 211 HLDLGGVNLGKAFDWSLA--INSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ 268
            +      +    + +L     +  ++   RL   +         +    I    +  + 
Sbjct: 376 SVLYFCRQMT---NAALITIARNRPNMTRFRLCIIEPKA-PDYLTLEPLDIGFGAIVEHC 431

Query: 269 FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDF-NSSIPNWL 327
            D   L LS +       Y+                    +  L +++    +  + + L
Sbjct: 432 KDLRRLSLSGLLTDKVFEYI--------------GTYAKKMEMLSVAFAGDSDLGMHHVL 477

Query: 328 ASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLC---NLRE 384
           +   +L  + +R            A+   ++  L +SS  +     +  G+     N+  
Sbjct: 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537

Query: 385 ISLSDVKMSQDISEILDIFSSCIS 408
           I       S+  S  ++      +
Sbjct: 538 IDERGAPDSRPESCPVERVFIYRT 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 2e-11
 Identities = 41/292 (14%), Positives = 91/292 (31%), Gaps = 17/292 (5%)

Query: 217 VNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVL 276
           V   +       + +L  +        +          +   +  L  +S          
Sbjct: 259 VCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTF 318

Query: 277 SWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHI 336
             ++  S+     +   D              L   +LS    ++ + + L S   L  +
Sbjct: 319 RVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE-KSTVLQSELESCKELQEL 377

Query: 337 SLRSNSLQGSITGFLAN---LSASIEVLDLSSQQLEGQIPR--SFGRLCNLREISLSDVK 391
              +     +I   +     L    E L   S        R      L +   +  S +K
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 392 MSQDISEILDIFSSCISD--------RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHN 443
           M      +L +    ++          +   D++  ++   L   +   + L+ L  S N
Sbjct: 438 MEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496

Query: 444 SISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT 495
           ++  +    +  L  L+ ++L NN L+   +   L +  +LV  ++ GN+L 
Sbjct: 497 ALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 9e-09
 Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 9/225 (4%)

Query: 535 LDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTL 594
                  +        W  S           R      + +    L   +LS    +   
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ 365

Query: 595 PLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVL 654
             +    E  +L        ++ +L       L  L  E  +         ++ +    L
Sbjct: 366 SELESCKELQELEPENKWCLLTIILLMR---ALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 655 NLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIP 714
           +   + F             + +LHL    L+  +   L     +  L++  N+    +P
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALP 479

Query: 715 TWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759
             +      + +L    N  +      +  L  LQ L L  N L 
Sbjct: 480 PAL-AALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 44/286 (15%), Positives = 81/286 (28%), Gaps = 43/286 (15%)

Query: 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSL 685
           +L   +L +          W      +   L  +           +   L    L     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKS 361

Query: 686 SGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFL 745
           +  +   L +C  L  L  +                   +IL +R+          L + 
Sbjct: 362 T-VLQSELESCKELQELEPENKWCL------------LTIILLMRALDPLLYEKETLQYF 408

Query: 746 TSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDP 805
           ++L+ +D                 S  +  +  L   +  +    L    L         
Sbjct: 409 STLKAVD------PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--------- 453

Query: 806 IEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRI 865
                       L +   L LV  +DLS N     +P  +  L  L  L  S N     +
Sbjct: 454 ----------TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 866 PDSIGAMKSIEVIDFSNNQLSE-EIPRSVSNLTFLNLLNLSYNYLS 910
              +  +  ++ +   NN+L +    + + +   L LLNL  N L 
Sbjct: 502 DG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 4/112 (3%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
             L     + +LDLS N     +P  L ++  L+ L  S    +  +   + NL +LQ L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQEL 513

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAI-NSLSSLRVL 238
            L  N       +  L     L  L+L G +L +       +   L S+  +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 17/221 (7%)

Query: 707 NQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCI 766
           +Q        I     S     L        +  +      L   +L     +  +   +
Sbjct: 311 DQLPQHTFRVIWTGSDSQKECVL-LKDRPECWCRDSATDEQLFRCELSVEKST-VLQSEL 368

Query: 767 SNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYL 826
            +          L +  P    C L  + +   R+    + +   +     L+    +  
Sbjct: 369 ESCK-------ELQELEPENKWCLL--TIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419

Query: 827 VALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS 886
            A +D  ++ F  E  V   +   +R L+L++   +  +   +  +  +  +D S+N+L 
Sbjct: 420 -AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR 476

Query: 887 EEIPRSVSNLTFLNLLNLSYNYLS--GEIPTSTQLQSFDAS 925
             +P +++ L  L +L  S N L     +    +LQ     
Sbjct: 477 A-LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 32/213 (15%), Positives = 64/213 (30%), Gaps = 12/213 (5%)

Query: 425 LTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKL 484
                   + L    LS    + ++ S L     L+ +   N           +  +  L
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL----LTIILLMRAL 395

Query: 485 VSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQD 544
                    L        + P +   LD              +    +  L ++   +  
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 545 TVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF--QLE 602
                  E    +  L+ S++R+    P L+    L  +  S N L   +  ++   +L+
Sbjct: 456 L---CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQ 511

Query: 603 SIDLSNNAFSGSISPVLCNGMRGELQVLNLENN 635
            + L NN      + +        L +LNL+ N
Sbjct: 512 ELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGN 543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 50/301 (16%), Positives = 105/301 (34%), Gaps = 51/301 (16%)

Query: 226 SLAINSLSSLRVLRLSGCQLDHFHPPPI-----VNISSISVLDLSSNQF-DQNSLVLSWV 279
               +    +  L LS   L       +        +S++ L+LS N    +NS  L  +
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 280 FGLSN--LVYLDLGSNDFQG----SIPVGLQNL-TSLRHLDLSYNDFNSSIPNWLASF-- 330
                  +  L+L  N         +   L  +  ++  LDL +NDF+S   +       
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 331 ---SNLVHISLRSNSLQG----SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRL---- 379
              +++  ++LR N L       +   LA + A++  L+L    L  +      +     
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 380 -CNLREISLSDVKMSQD-ISEILDIFSSCISDRLESWDMTGCKI----FGHLTSQIGHFK 433
             ++  + LS   +     +E+  IFSS   + + S ++    +      +L       K
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSI-PNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
            L +++L ++ +  +       L +                     N+ K++  D +G  
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAA------------------FPNIQKIILVDKNGKE 295

Query: 494 L 494
           +
Sbjct: 296 I 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 41/265 (15%), Positives = 82/265 (30%), Gaps = 35/265 (13%)

Query: 134 QHLNYLDLSGNSFGGGIPRFLGSM-----GKLKYLNLSG-----AGFKGMIPHQLGNLSK 183
            ++  L+LSGN         L          +  L+L                     + 
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 184 LQYLDLVENS------ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLA---INSLSS 234
           +  L+L  N       +  +  L+ +P  + +  L+L G NL       LA    +  +S
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIP--ANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 235 LRVLRLSGCQLDHFHPPPIV-----NISSISVLDLSSNQF-DQNSLVLSWVF-GLSNLVY 287
           +  L LS   L       +        + +  L+L  N     +   L  +   L +L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 288 LDLGSNDFQGSIPVG-------LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
           + L  +  +               N+  +  +D +  + + S    +++    +      
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADV 317

Query: 341 NSLQGSITGFLANLSASIEVLDLSS 365
            SL      F      +IE L++  
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNIPD 342

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 59/321 (18%), Positives = 97/321 (30%), Gaps = 62/321 (19%)

Query: 526 LLSQNV-LGYLDISRSGIQDTVPARFWEA----SPQLYFLNFSNSRINGE-IPNLSKA-- 577
             S    +  LD+S + +         +A       +  LN S + +  +    L +   
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 578 ---TGLRTVDLSSNN--------LSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGE 626
                + +++LS N         L  TL  I F +  +DL  N FS   S          
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 627 ---LQVLNLENNSFSGE--------IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSL--- 672
              +  LNL  N    +        +     N   +  LNL  NN        L      
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPAN---VNSLNLRGNNLASKNCAELAKFLAS 193

Query: 673 --GSLTLLHLQKNSLSGR----IPESLSNCN-RLVSLNMDGNQFSGDIPTWIGE---KFS 722
              S+T L L  N L  +    +    S+    +VSLN+  N   G     +        
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 723 SMVILNLRSNIFDGQFPTELCFL-------TSLQILDLGYNNLSGAIPKCISNLSAMVTV 775
            +  + L  +I       +   L         + ++D     +  +    ISNL      
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL------ 307

Query: 776 DYPLGDTHPGITDCSLYRSCL 796
              + +        SL   CL
Sbjct: 308 ---IRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 57/364 (15%), Positives = 109/364 (29%), Gaps = 65/364 (17%)

Query: 149 GIPRFLGSMGKLKYLNLSG-----AGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWL 203
            +  F      +  L+LS           +I       + +  L+L  N      +L   
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN------SLG-- 64

Query: 204 PGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNI-----SS 258
                          L +           +++  L LSG  L +     +V        +
Sbjct: 65  ---------FKNSDELVQIL-----AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110

Query: 259 ISVLDLSSNQF-DQNSLVLSWVFGLSN--LVYLDLGSNDFQG----SIPVGLQNL-TSLR 310
           I+VLDL  N F  ++S      F      +  L+L  ND        +   L  +  ++ 
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 311 HLDLSYNDFNSSIPNWLASF-----SNLVHISLRSNSLQGS----ITGFLANLSASIEVL 361
            L+L  N+  S     LA F     +++  + L +N L       +    +++   +  L
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 362 DLSSQQLEGQ----IPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISD--RLESWD 415
           +L    L G     +      L +L+ + L    +     E      +   +  ++   D
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 416 MTGCKIFGHLTSQIG-----HFKSLDSLFLSHNSIS-----GLIPSSLGGLSSLERVVLS 465
             G +I    +  I           D   L +  +            L     L   + +
Sbjct: 291 KNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQT 350

Query: 466 NNTL 469
              L
Sbjct: 351 CKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 48/325 (14%), Positives = 95/325 (29%), Gaps = 78/325 (24%)

Query: 440 LSHNSISG----LIPSSLGGLSSLERVVLSNNTL--KG--YLSEIHLANLSKLVSFDVSG 491
           +++          +         +  + LS N L       L +      + + S ++SG
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 492 NALT----------LKVGPDWIPPFQLEKLDLQSCHLGPT----FPFWLLSQN-VLGYLD 536
           N+L           L   P       +  L+L    L           L +    +  LD
Sbjct: 61  NSLGFKNSDELVQILAAIPA-----NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 537 ISRSGIQDTVPARFWEA----SPQLYFLNFSNSRINGE-IPNLSKA-----TGLRTVDLS 586
           +  +       + F +A       +  LN   + +  +    L +        + +++L 
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175

Query: 587 SNN--------LSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638
            NN        L+  L  I   + S+DLS N         L              +    
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI---------FSSIPNH 226

Query: 639 GEIPDCWMNFLYLRVLNLGNNNFTG----NLPPSLGSLGSLTLLHLQKNSLSG------- 687
                       +  LNL  N   G    NL     SL  L  ++L  + +         
Sbjct: 227 ------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274

Query: 688 RIPESLSNCNRLVSLNMDGNQFSGD 712
            +  +  N  +++ ++ +G +    
Sbjct: 275 ALGAAFPNIQKIILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 46/283 (16%), Positives = 93/283 (32%), Gaps = 51/283 (18%)

Query: 283 SNLVYLDLGSNDFQGSIPVGL-----QNLTSLRHLDLSYNDFNSSIPNWLASF-----SN 332
             +  LDL  N+      V L         S+  L+LS N       + L        +N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 333 LVHISLRSNSLQG----SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRL-----CNLR 383
           +  ++L  N L       +   LA +  +I VLDL       +    F +       ++ 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 384 EISLSDVKMS----QDISEILDIFSSCISDRLESWDMTGCKI----FGHLTSQIGHF-KS 434
            ++L    +      ++ +IL    + I   + S ++ G  +       L   +     S
Sbjct: 142 SLNLRGNDLGIKSSDELIQIL----AAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 435 LDSLFLSHNSIS----GLIPSSLGGL-SSLERVVLSNNTLKG----YLSEIHLANLSKLV 485
           + SL LS N +       +      + + +  + L  N L G     L  +   +L  L 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL-KDSLKHLQ 256

Query: 486 SFDVSGNALTLKVGPDWIPPF--------QLEKLDLQSCHLGP 520
           +  +  + +   +  +             ++  +D     + P
Sbjct: 257 TVYLDYDIVK-NMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 56/365 (15%), Positives = 107/365 (29%), Gaps = 89/365 (24%)

Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLAS-----FSNLVHISLRSNSLQ----GSITGFLAN 353
                 +  LDLS N+  S     L        +++  ++L  NSL       +   LA 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 354 LSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLES 413
           + A++  L+LS                 L   S        ++ + L    + I   +  
Sbjct: 78  IPANVTSLNLSG--------------NFLSYKSS------DELVKTL----AAIPFTITV 113

Query: 414 WDMTGCKI----FGHLTSQIGHF-KSLDSLFLSHNSISG----LIPSSLGGL-SSLERVV 463
            D+                  +   S+ SL L  N +       +   L  + +++  + 
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173

Query: 464 LSNNTLK----GYLSEIHLANLSKLVSFDVSGNALTLKVGPDWI-----PPFQLEKLDLQ 514
           L  N L       L++   +  + + S D+S N L LK   +        P  +  L+L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 515 SCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNL 574
              L                 ++              ++   L  +      +       
Sbjct: 234 LNCLHGP-----------SLENLKLLK----------DSLKHLQTVYLDYDIVKNMSKEQ 272

Query: 575 SKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMR---GELQVLN 631
            KA G       +            ++  +D +      S S  + N +R   G+  V +
Sbjct: 273 CKALGAA---FPNIQ----------KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319

Query: 632 LENNS 636
           L N  
Sbjct: 320 LLNQC 324

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 49/297 (16%), Positives = 104/297 (35%), Gaps = 56/297 (18%)

Query: 651 LRVLNLGNNNFTGNLPPSLGSL-----GSLTLLHLQKNSLSGR----IPESLSNCNR-LV 700
           +  L+L  NN        L         S+T L+L  NSL  +    + + L+     + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSM----VILNLRSNIFDGQFPTELC-----FLTSLQIL 751
           SLN+ GN  S      + +  +++     +L+L  N F  +  +E          S+  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 752 DLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFL 811
           +L  N+L     K    L  +      L      +   +L  +      + +   +    
Sbjct: 144 NLRGNDLG---IKSSDELIQI------LAAIPANVNSLNLRGN------NLAS--KNCAE 186

Query: 812 VMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVA-----LRSLNLSYNHFSG--- 863
           + K      +++  L    DLS N    +   E+  + +     + SLNL  N   G   
Sbjct: 187 LAKFLASIPASVTSL----DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 864 -RIPDSIGAMKSIEVIDFSNNQLS-------EEIPRSVSNLTFLNLLNLSYNYLSGE 912
             +     ++K ++ +    + +        + +  +  N+  + L++ +   +   
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 9e-10
 Identities = 57/445 (12%), Positives = 127/445 (28%), Gaps = 73/445 (16%)

Query: 205 GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDL 264
            L  L+ +    + +       LA      L  L+L  C             ++  +L +
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----------GFTTDGLLSI 159

Query: 265 SSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL----QNLTSLRHLDLSYNDF- 319
            ++                 +  L +  + F       L    Q+ TSL  L+    +F 
Sbjct: 160 VTH--------------CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205

Query: 320 ---NSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF 376
                 +     +  +LV + +  +     + GF    +A++E     S   +  +P  +
Sbjct: 206 KISPKDLETIARNCRSLVSVKV-GDFEILELVGFFK-AAANLEEFCGGSLNEDIGMPEKY 263

Query: 377 GRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGH-LTSQIGHFKSL 435
             L   R++    +        +  +F      ++   D+    +      + I    +L
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNE-MPILFPFA--AQIRKLDLLYALLETEDHCTLIQKCPNL 320

Query: 436 DSLFLSHN-SISGLIPSSLGGLSSLERVVLSNNTLKGYLSE----------IHLA-NLSK 483
           + L   +     GL          L+R+ +     +  + +          I LA    +
Sbjct: 321 EVLETRNVIGDRGLE-VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379

Query: 484 LVSFDVSGNALT---LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNV--------- 531
           L    V  + +T   L+    ++    L    L             L   V         
Sbjct: 380 LEYMAVYVSDITNESLESIGTYLK--NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437

Query: 532 LGYLDISR--SGIQDTVPARFWEASPQLYFLNFSNSRI--NGEIPNLSKATGLRTVDLSS 587
           L          G+ D   +   + SP + ++          G +        L+ +++  
Sbjct: 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497

Query: 588 NNLS--GTLPLISF--QLESIDLSN 608
              S       ++    L  + +  
Sbjct: 498 CCFSERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 63/497 (12%), Positives = 138/497 (27%), Gaps = 60/497 (12%)

Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLD 362
            +   +LR L L      +       ++   V   +            ++N    ++ + 
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTE----------ISNNLRQLKSVH 118

Query: 363 LSSQQL--EGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCK 420
                +        +  R  +L  + L           +L I + C    +++  M    
Sbjct: 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG-LLSIVTHCRK--IKTLLMEESS 175

Query: 421 I----FGHLTSQIGHFKSLDSLFLSHNSISGLIPSSL----GGLSSLERVVLSNNTLKGY 472
                   L     H  SL+ L       + + P  L        SL  V + +  +   
Sbjct: 176 FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235

Query: 473 LSEIHLA-NLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNV 531
           +     A NL +     ++ +    +   + + P +L +L L           +  +   
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ- 294

Query: 532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSK-ATGLRTVDLSSNNL 590
           +  LD+  + ++        +  P L  L   N   +  +  L++    L+ + +     
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 591 SGTLPLISF---------------QLESIDLSNNAFS-GSISPVLCNGMRGELQVLNLEN 634
              +                    +LE + +  +  +  S+  +        L    L  
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY--LKNLCDFRLVL 412

Query: 635 NSFSGEIPDCWM---------NFLYLRVLNL--GNNNFTGNLPPSLGSLG-SLTLLHLQK 682
                 I D  +             LR           T      +G    ++  + L  
Sbjct: 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472

Query: 683 NSLSGR-IPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNL---RSNIFDGQF 738
              S   + E    C  L  L M G  FS         K  S+  L +   R+++     
Sbjct: 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532

Query: 739 PTELCFLTSLQILDLGY 755
                   +++++    
Sbjct: 533 MQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 45/307 (14%), Positives = 92/307 (29%), Gaps = 60/307 (19%)

Query: 129 SLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKG-MIPHQLGNLSKLQYL 187
           +L+  + L  L LS       +P       +++ L+L  A  +       +     L+ L
Sbjct: 265 NLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323

Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDH 247
           +         + +            D G   L +             L+ LR+     + 
Sbjct: 324 ET-------RNVIG-----------DRGLEVLAQ---------YCKQLKRLRIERGADEQ 356

Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQ----GSIPVGL 303
                   +S   ++ L+               G   L Y+ +  +D       SI   L
Sbjct: 357 GMEDEEGLVSQRGLIALAQ--------------GCQELEYMAVYVSDITNESLESIGTYL 402

Query: 304 QNLTSLRHLDLSYND------FNSSIPNWLASFSNLVHISLRSNSLQGSITGF--LANLS 355
           +NL   R + L   +       ++ + + L     L   +        +  G   +   S
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLC-NLREISLSDVKMSQDISEILDIFSSCISDRLESW 414
            ++  + L       +    F R C NL+++ +     S+    I    +   S  L   
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER--AIAAAVTKLPS--LRYL 518

Query: 415 DMTGCKI 421
            + G + 
Sbjct: 519 WVQGYRA 525

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 48/412 (11%), Positives = 106/412 (25%), Gaps = 57/412 (13%)

Query: 372 IPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGH 431
             R   R  NLR + L     +   + I + +   ++  +                   +
Sbjct: 65  PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT--------------EISNN 110

Query: 432 FKSLDSLFLSHNSIS--GLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLA-NLSKLVSFD 488
            + L S+      +S   L   +      LE + L   +       + +  +  K+ +  
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 489 VSGNALTLKVGPDWIPPF-----QLEKLDLQSCHLGP----TFPFWLLSQNVLGYLDISR 539
           +  ++ + +    W+         LE L+                   +   L  + +  
Sbjct: 171 MEESSFS-EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 540 SGIQDTVPARFWEASPQLYFLNFSNSRINGEIP-NLSKATGLRTVDLSSNNLSGTLPLIS 598
             I +     F++A+  L      +   +  +P         R +     +  G   +  
Sbjct: 230 FEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 599 F-----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV 653
                 Q+  +DL            L       L+VL   N      +         L+ 
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPN-LEVLETRNVIGDRGLEVLAQYCKQLKR 346

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI 713
           L +        +    G +    L+ L               C  L  + +  +  + + 
Sbjct: 347 LRIERGADEQGMEDEEGLVSQRGLIAL------------AQGCQELEYMAVYVSDITNES 394

Query: 714 PTWIGEKFSSMVILNLRS---------NIFDGQFPTELCFLTSLQILDLGYN 756
              IG    ++    L              D    + L     L+       
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 33/213 (15%)

Query: 579 GLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENN--- 635
              +VD SS  L+     I    + +DL +N  S S+     + +  +L++L L +N   
Sbjct: 17  NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLS-SLPSKAFHRLT-KLRLLYLNDNKLQ 74

Query: 636 SFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKN---SLSGRIPE 691
           +    I     N   L  L + +N     LP  +   L +L  L L +N   SL  R+ +
Sbjct: 75  TLPAGIFKELKN---LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130

Query: 692 SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFDGQFPTELC 743
           SL+    L  L++  N+    +P  + +K +S+  L L +N         FD        
Sbjct: 131 SLTK---LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK------- 179

Query: 744 FLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
            LT L+ L L  N L         +L  +  + 
Sbjct: 180 -LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 7/159 (4%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLG 291
           +  + L L   +L          ++ + +L L+ N+      + + +F  L NL  L + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---QTLPAGIFKELKNLETLWVT 93

Query: 292 SNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
            N  Q ++P+G+   L +L  L L  N   S  P    S + L ++SL  N LQ    G 
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 351 LANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
              L+ S++ L L + QL+     +F +L  L+ + L +
Sbjct: 153 FDKLT-SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 41/173 (23%), Positives = 59/173 (34%), Gaps = 27/173 (15%)

Query: 132 HFQHLNYLDLSGN---SFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLD 188
               L  L L+ N   +   GI      +  L+ L ++    + +       L  L  L 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIF---KELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115

Query: 189 LVENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGKAFDWSL---AINSLSSLRVLRL 240
           L  N       L  LP      L+ L +L LG   L      SL     + L+SL+ LRL
Sbjct: 116 LDRN------QLKSLPPRVFDSLTKLTYLSLGYNEL-----QSLPKGVFDKLTSLKELRL 164

Query: 241 SGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSN 293
              QL          ++ +  L L +NQ     +       L  L  L L  N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 26/190 (13%)

Query: 434 SLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493
               L L  N +S L   +   L+ L  + L++N L+  L       L  L +  V+ N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96

Query: 494 LTLKVGPDWIP------PFQLEKLDLQSCHLG--PTFPFWLLSQNVLGYLDISRSGIQDT 545
           L        +P         L +L L    L   P   F  L++  L YL +  + +Q +
Sbjct: 97  LQA------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--LTYLSLGYNELQ-S 147

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPN--LSKATGLRTVDLSSNNLSGTLPLISF---- 599
           +P   ++    L  L   N+++   +P     K T L+T+ L +N L   +P  +F    
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLE 205

Query: 600 QLESIDLSNN 609
           +L+ + L  N
Sbjct: 206 KLKMLQLQEN 215

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 6e-09
 Identities = 91/627 (14%), Positives = 177/627 (28%), Gaps = 182/627 (29%)

Query: 34  ESEREALLK--FKKDLKDPSN----RLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLG 87
           +  +  L K      +           + W          K   +V   F   VL +   
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFW------TLLSKQEEMV-QKFVEEVLRI--- 89

Query: 88  NPLNHPI---SYHTSPAQYSIIYRTY----------GAEYEAY--ERSKFGGKINPSLLH 132
              N+        T   Q S++ R Y             +  Y   R +   K+  +LL 
Sbjct: 90  ---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 133 FQHLNYLDLSGNSFGGGI------------PRFLGSM-GKLKYLNLSGAGFKGMIPHQLG 179
            +    + + G     G              +    M  K+ +LNL        +   L 
Sbjct: 147 LRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 180 NLS---KLQYLDLVENSELYVDNLSWL-PGLS-LLQH-------LDLGGV---NLGKAFD 224
            L       +    ++S      +  +   L  LL+        L L  V       AF+
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 225 WS---LA-------INSLSSLRVLRLSGCQLDH----FHPPPIVNISS----ISVLDLSS 266
            S   L         + LS+     +S   LDH      P  + ++          DL  
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 267 NQFDQNSLVLSWVFG--LSNLV-----YLDLGSNDFQGSIPVGLQNLTS--LRHLDLSYN 317
                N   LS +    + + +     +  +  +     I   L  L     R +   ++
Sbjct: 321 EVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---FD 376

Query: 318 DF-----NSSIPN------WLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQ 366
                  ++ IP       W     + V            +   L   S    +++   +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDV----------MVVVNKLHKYS----LVEKQPK 422

Query: 367 QLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLT 426
           +    IP        L+    ++  + +    I+D ++  I    +S D+    +  +  
Sbjct: 423 ESTISIP---SIYLELKVKLENEYALHR---SIVDHYN--IPKTFDSDDLIPPYLDQYFY 474

Query: 427 SQIG-HFKSLD---------SLFLSHNSISGLI---PSSLGGLSSLERVVLSNNTLKGYL 473
           S IG H K+++          +FL    +   I    ++     S+   +      K Y+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 474 SEIHLAN---LSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQN 530
            +        ++ ++ F                    L K++ ++               
Sbjct: 535 CDNDPKYERLVNAILDF--------------------LPKIE-ENLICSK---------- 563

Query: 531 VLGYLDISRSGIQDTVPARFWEASPQL 557
              Y D+ R  +     A F EA  Q+
Sbjct: 564 ---YTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-04
 Identities = 74/501 (14%), Positives = 141/501 (28%), Gaps = 140/501 (27%)

Query: 524 FWLLSQNVLGYLDISRSGIQDTVPARFWEASPQL-YFLNFSNSRINGEIPNLSKATGLRT 582
           FW L               Q+ +  +F E   ++ Y   F  S I  E     +   + T
Sbjct: 68  FWTLLSK------------QEEMVQKFVEEVLRINY--KFLMSPIKTE----QRQPSMMT 109

Query: 583 VDLSS--NNLSGTLPLIS----FQLESIDLSNNAFSGSISP---VLCNGMRG------EL 627
                  + L     + +     +L+       A    + P   VL +G+ G       L
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVAL 168

Query: 628 QVLNLEN--NSFSGEIPDCWMNF---------------LYLRV-LNLGNN-NFTGNLPPS 668
            V            +I   W+N                L  ++  N  +  + + N+   
Sbjct: 169 DVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 669 LGS----LGSLTLLHLQKNSL-------SGRIPESLS-NC-------NRLVSLNMDGN-- 707
           + S    L  L      +N L       + +   + + +C        + V+  +     
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 708 -QFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELC----FLTSL-------------Q 749
              S D  +          +L    +      P E+        S+              
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 750 ILDLGYNNLSGAIPKCISNLSAMVTVDY--PLG----DTH-PGITDCSLYRSCLPR-PRS 801
              +  + L+  I   ++ L           L       H P I    ++   +      
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 802 FSDPIEKAFLVMK-GKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVAL-RSLNLSYN 859
             + + K  LV K  KE   S  +  + L          E+ V++ +  AL RS+   YN
Sbjct: 407 VVNKLHKYSLVEKQPKESTIS--IPSIYL----------ELKVKLENEYALHRSIVDHYN 454

Query: 860 HFSGRIPDSIGA--------------MKSIEVIDFSNNQLSEEIPRSVSNLTFL----NL 901
                  D +                +K+IE     + +          +  FL      
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-----HPERMTLFRMVFLDFRFLEQKIRH 509

Query: 902 LNLSYNYLSGEIPTSTQLQSF 922
            + ++N     + T  QL+ +
Sbjct: 510 DSTAWNASGSILNTLQQLKFY 530

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 360 VLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGC 419
           ++ L+++ +E Q    +      RE+ L        I  I ++ ++   D+ ++ D +  
Sbjct: 1   MVKLTAELIE-QAA-QYTNAVRDRELDLR----GYKIPVIENLGATL--DQFDAIDFSDN 52

Query: 420 KIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLA 479
           +I           + L +L +++N I  +       L  L  ++L+NN+L        LA
Sbjct: 53  EI--RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110

Query: 480 NLSKLVSFDVSGNALTLKVGPD-------WIPPFQLEKLDLQ 514
           +L  L    +  N +T K            +P  Q+  LD Q
Sbjct: 111 SLKSLTYLCILRNPVTNK--KHYRLYVIYKVP--QVRVLDFQ 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 32/155 (20%), Positives = 49/155 (31%), Gaps = 40/155 (25%)

Query: 560 LNFSNSRINGEIPNLSKATGLRTVDLSSN------NLSGTLPLISFQLESIDLSNNAFSG 613
           +  +   I  +    + A   R +DL         NL  TL     Q ++ID S+N    
Sbjct: 2   VKLTAELIE-QAAQYTNAVRDRELDLRGYKIPVIENLGATLD----QFDAIDFSDN---- 52

Query: 614 SISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG 673
            I  +                        D +     L+ L + NN           +L 
Sbjct: 53  EIRKL------------------------DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88

Query: 674 SLTLLHLQKNSLSG-RIPESLSNCNRLVSLNMDGN 707
            LT L L  NSL      + L++   L  L +  N
Sbjct: 89  DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 556 QLYFLNFSNSRINGEIPNLSKA-TGLRTVDLSSNNLS--GTLPLISFQLESIDLSNNAFS 612
           +   L+    +I   I NL         +D S N +      PL+  +L+++ ++NN   
Sbjct: 20  RDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRIC 77

Query: 613 GSISPVLCNGMRGELQVLNLENNSFS--GEIPDCWMNFLYLRVLNLGNNNFT 662
             I   L   +  +L  L L NNS    G++ D   +   L  L +  N  T
Sbjct: 78  -RIGEGLDQALP-DLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 36/147 (24%)

Query: 302 GLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF--LANLSASIE 359
              N    R LDL        I N  A+      I    N ++  + GF  L  L    +
Sbjct: 14  QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRL----K 67

Query: 360 VLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGC 419
            L +++ ++          L +L E+ L++      + E+ D+                 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNS----LVELGDL----------------- 106

Query: 420 KIFGHLTSQIGHFKSLDSLFLSHNSIS 446
                    +   KSL  L +  N ++
Sbjct: 107 -------DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 132 HFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
                + +D S N     I +      + +LK L ++      +       L  L  L L
Sbjct: 40  TLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGG 216
             NS + + +L  L  L  L +L +  
Sbjct: 96  TNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 22/146 (15%)

Query: 177 QLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLR 236
           Q  N  + + LDL       ++NL     L     +D     + K   +      L  L+
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLG--ATLDQFDAIDFSDNEIRKLDGFP----LLRRLK 67

Query: 237 VLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQ 296
            L ++  ++          +  ++ L L++N   +    L  +  L +L YL +  N   
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLTYLCILRN--- 123

Query: 297 GSIPVG---------LQNLTSLRHLD 313
              PV          +  +  +R LD
Sbjct: 124 ---PVTNKKHYRLYVIYKVPQVRVLD 146

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 52/270 (19%), Positives = 85/270 (31%), Gaps = 33/270 (12%)

Query: 129 SLLHFQHLNYLDLSGNSFG-GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYL 187
                  + ++DLS +      +   L    KL+ L+L G      I + L   S L  L
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 188 DLVENSELYVDNLSWLP-GLSLLQHLDLGG-VNLGKAFDWSLAINSLSSLRVLRLSGCQL 245
           +L   S      L  L    S L  L+L    +  +        +   ++  L LSG + 
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207

Query: 246 DHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDL-GSNDFQGSIPVGLQ 304
                    N+    +  L                   NLV+LDL  S   +        
Sbjct: 208 ---------NLQKSDLSTLVRR--------------CPNLVHLDLSDSVMLKNDCFQEFF 244

Query: 305 NLTSLRHLDLSY-NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDL 363
            L  L+HL LS   D        L     L  + +      G+    L  L  ++  L +
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT----LQLLKEALPHLQI 300

Query: 364 SSQQLEGQIPRSFGRLCNLREISLSDVKMS 393
           +          + G   N +EI     +++
Sbjct: 301 NCSHFTTIARPTIGNKKN-QEIWGIKCRLT 329

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 10/227 (4%)

Query: 171 KGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAIN 230
           K + P   G L     +            L+       +QH+DL    +  +    +  +
Sbjct: 57  KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-S 115

Query: 231 SLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDL 290
             S L+ L L G +L       +   S++  L+LS         + + +   S L  L+L
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 291 GSNDFQGSIPVGL---QNLTSLRHLDLSYNDFN---SSIPNWLASFSNLVHISLRS-NSL 343
                     V +       ++  L+LS    N   S +   +    NLVH+ L     L
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 344 QGSITGFLANLSASIEVLDLSS-QQLEGQIPRSFGRLCNLREISLSD 389
           +         L+  ++ L LS    +  +     G +  L+ + +  
Sbjct: 236 KNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.0 bits (114), Expect = 9e-06
 Identities = 50/273 (18%), Positives = 97/273 (35%), Gaps = 26/273 (9%)

Query: 225 WSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN 284
           W    +  S  + L L+G  L       +++   I+               L+  F    
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAF----RCPRSFMDQPLAEHFSPFR 94

Query: 285 LVYLDL-GSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSL 343
           + ++DL  S     ++   L   + L++L L     +  I N LA  SNLV ++L   S 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS- 153

Query: 344 QGSIT----GFLANLSASIEVLDLS--SQQLEGQIPRSFGRLC-NLREISLSDVKMSQDI 396
               +      L +  + ++ L+LS      E  +  +   +   + +++LS  + +   
Sbjct: 154 --GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQ----IGHFKSLDSLFLSH-NSISGLIPS 451
           S++  +   C +  L   D++       L +           L  L LS    I      
Sbjct: 212 SDLSTLVRRCPN--LVHLDLSDSV---MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 266

Query: 452 SLGGLSSLERVVLSNNTLKGYLSEIHLANLSKL 484
            LG + +L+ + +      G L  +    L  L
Sbjct: 267 ELGEIPTLKTLQVFGIVPDGTLQLL-KEALPHL 298

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 378 RLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDS 437
               +RE+ L + K   +  +I  + +      LE   +    +     S +     L  
Sbjct: 22  TPAAVRELVLDNCK--SNDGKIEGLTAEF--VNLEFLSLINVGL--ISVSNLPKLPKLKK 75

Query: 438 LFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLK 497
           L LS N I G +      L +L  + LS N LK   +   L  L  L S D+    +T  
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

Query: 498 VG-----PDWIPPFQLEKLDLQ 514
                     +P  QL  LD  
Sbjct: 136 NDYRESVFKLLP--QLTYLDGY 155

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 124 GKINPSLLHFQHLNYLDLSGNSFGGGIPR--FLGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
           GKI      F +L +L L       G+     L  + KLK L LS     G +      L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGG 216
             L +L+L  N    +  L  L  L  L+ LDL  
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 559 FLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISP 617
            L+   S         ++   L  + L +  L     L    +L+ ++LS N        
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF-GGLD 88

Query: 618 VLCNGMRGELQVLNLENNSFS--GEIPDCWMNFLYLRVLNLGNN 659
           +L   +   L  LNL  N       + +       L+ L+L N 
Sbjct: 89  MLAEKLP-NLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 378 RLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDS 437
              +++E+ L + +   +  ++  +      + LE        +     + +     L  
Sbjct: 15  TPSDVKELVLDNSR--SNEGKLEGLTDEF--EELEFLSTINVGL--TSIANLPKLNKLKK 68

Query: 438 LFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLK 497
           L LS N +SG +        +L  + LS N +K   +   L  L  L S D+    +T  
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 498 VG-----PDWIPPFQLEKLD 512
                     +P  QL  LD
Sbjct: 129 NDYRENVFKLLP--QLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 124 GKINPSLLHFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
           GK+      F+ L +L         G+     L  + KLK L LS     G +       
Sbjct: 32  GKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGG 216
             L +L+L  N    +  +  L  L  L+ LDL  
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 600 QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNN 659
            ++ + L N+  S             EL+ L+  N   +  I +       L+ L L +N
Sbjct: 18  DVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLT-SIANLP-KLNKLKKLELSDN 74

Query: 660 NFTGNLPPSLGSLGSLTLLHLQKNSLSG-RIPESLSNCNRLVSLNMDGN 707
             +G L        +LT L+L  N +      E L     L SL++   
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 626 ELQVLNLENNSFS-GEIPDCWMNFLYLRVLNLGNNNFT--GNLPPSLGSLGSLTLLHLQK 682
           +++ L L+N+  + G++      F  L  L+  N   T   NLP     L  L  L L  
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSD 73

Query: 683 NSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIG-EKFSSMVILNLRSN 732
           N +SG +      C  L  LN+ GN+   D+ T    +K  ++  L+L + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 14/124 (11%)

Query: 221 KAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSW-V 279
            AF           LR + LS  Q+    P     + S++ L L  N+       L   +
Sbjct: 50  GAFS------PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT----ELPKSL 99

Query: 280 F-GLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS 337
           F GL +L  L L +N     + V   Q+L +L  L L  N   +      +    +  + 
Sbjct: 100 FEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158

Query: 338 LRSN 341
           L  N
Sbjct: 159 LAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 32/170 (18%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
            IP  L    ++  + L  N      P   + +  L  I L +N +          L  S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-S 81

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           +  L L   ++       F  L +L+ + L+  K++            C+          
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN------------CLRVD------- 122

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
               F  L +       L+ L L  N +  +   +   L +++ + L+ N
Sbjct: 123 ---AFQDLHN-------LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 37/152 (24%), Positives = 55/152 (36%), Gaps = 33/152 (21%)

Query: 628 QVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKN--- 683
             + LE N+     P  +  +  LR ++L NN  +  L P +   L SL  L L  N   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 684 SLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELC 743
            L   + E L +   L  L ++ N+                 I  LR + F         
Sbjct: 94  ELPKSLFEGLFS---LQLLLLNANK-----------------INCLRVDAFQD------- 126

Query: 744 FLTSLQILDLGYNNLSGAIPKCISNLSAMVTV 775
            L +L +L L  N L        S L A+ T+
Sbjct: 127 -LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 7/137 (5%)

Query: 283 SNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
             +  + L  N  +  IP G       LR +DLS N  +   P+      +L  + L  N
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPR-SFGRLCNLREISLSDVKMSQDISEIL 400
            +          L  S+++L L++ ++   +   +F  L NL  +SL D K+        
Sbjct: 91  KITELPKSLFEGLF-SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 401 DIFSSCISDRLES--WD 415
               +  +  L    + 
Sbjct: 149 SPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 21/141 (14%)

Query: 139 LDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVD 198
           + L  N+     P       KL+ ++LS      + P     L  L  L L  N      
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN------ 90

Query: 199 NLSWLP-----GLSLLQHLDLGGVNLGK----AFDWSLAINSLSSLRVLRLSGCQLDHFH 249
            ++ LP     GL  LQ L L    +      AF        L +L +L L   +L    
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ------DLHNLNLLSLYDNKLQTIA 144

Query: 250 PPPIVNISSISVLDLSSNQFD 270
                 + +I  + L+ N F 
Sbjct: 145 KGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 578 TGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
             +  + L  N +   +P  +F    +L  IDLSNN  S  ++P    G+R  L  L L 
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR-SLNSLVLY 88

Query: 634 NNSFSGEIPDCWMNFLY-LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPE 691
            N  + E+P      L+ L++L L  N     L   +   L +L LL L  N L      
Sbjct: 89  GNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 692 SLSNCNRLVSLNMDGNQF 709
           + S    + ++++  N F
Sbjct: 147 TFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 30/144 (20%)

Query: 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRL 411
            NL  +I  + L    ++   P +F     LR I LS+ ++  +++              
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAP------------- 73

Query: 412 ESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471
                     F  L S       L+SL L  N I+ L  S   GL SL+ ++L+ N +  
Sbjct: 74  --------DAFQGLRS-------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 472 YLSEIHLANLSKLVSFDVSGNALT 495
            L      +L  L    +  N L 
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 231 SLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLD 289
            L  LR +  S  ++           S ++ + L+SN+      V   +F GL +L  L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL---ENVQHKMFKGLESLKTLM 111

Query: 290 LGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           L SN     +       L+S+R L L  N   +  P    +  +L  ++L +N
Sbjct: 112 LRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 628 QVLNLENNSFSGEIPDCWMNFL-YLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSL 685
             L L NN F+          L  LR +N  NN  T ++   +      +  + L  N L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 686 SGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN----IFDGQFPTE 741
                +       L +L +  N+ +  +        SS+ +L+L  N    +  G F T 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT- 151

Query: 742 LCFLTSLQILDLGYNN 757
              L SL  L+L   N
Sbjct: 152 ---LHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 33/171 (19%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPN-WLASFSNLVHISLRSNSLQGSITGFLANLSA 356
            IP  +        L L+ N+F              L  I+  +N +     G     S 
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS- 81

Query: 357 SIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDM 416
            +  + L+S +LE    + F  L +L+ + L   +++            C+ +       
Sbjct: 82  GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT------------CVGND------ 123

Query: 417 TGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNN 467
                F  L+S       +  L L  N I+ + P +   L SL  + L  N
Sbjct: 124 ----SFIGLSS-------VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 37/119 (31%)

Query: 652 RVLNLGNNNFTGNLPPS--LGSLGSLTLLHLQKNSLSGRIPE----SLSNCNRLVSLNMD 705
             L L NN FT  L  +     L  L  ++   N ++  I E      S    +  + + 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG---VNEILLT 89

Query: 706 GNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPK 764
            N+                 + N++  +F G        L SL+ L L  N ++  +  
Sbjct: 90  SNR-----------------LENVQHKMFKG--------LESLKTLMLRSNRIT-CVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 10/138 (7%)

Query: 578 TGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
                + L++N  +       F    QL  I+ SNN  +  I      G    +  + L 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS-GVNEILLT 89

Query: 634 NNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPE- 691
           +N         +     L+ L L +N  T  +   S   L S+ LL L  N ++  +   
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 692 SLSNCNRLVSLNMDGNQF 709
           +    + L +LN+  N F
Sbjct: 148 AFDTLHSLSTLNLLANPF 165

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 51/224 (22%)

Query: 138 YLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGM--IPHQLGNLSKLQYLDLVENSEL 195
             +L   S           +  +  +  + +  K +  I +    L  ++YL L  N   
Sbjct: 23  KANLKKKSVTD-AVTQNE-LNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNK-- 74

Query: 196 YVDNLSWLP---GLSLLQHLDLGGVNL----GKAFDWSLAINSLSSLRVLRLSGCQLDHF 248
               L  +     L+ L +L L G  L       FD       L++L+ L L   QL   
Sbjct: 75  ----LHDISALKELTNLTYLILTGNQLQSLPNGVFD------KLTNLKELVLVENQLQSL 124

Query: 249 HPPPIVN-ISSISVLDLSSNQ--------FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSI 299
            P  + + +++++ L+L+ NQ        FD+          L+NL  LDL  N  Q S+
Sbjct: 125 -PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------LTNLTELDLSYNQLQ-SL 172

Query: 300 PVGL-QNLTSLRHLDLSYNDFNSSIPN-WLASFSNLVHISLRSN 341
           P G+   LT L+ L L  N    S+P+      ++L +I L  N
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 251 PPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
                ++SI  +  +++      +        L N+ YL LG N     I   L+ LT+L
Sbjct: 35  VTQNELNSIDQIIANNSD-----IKSVQGIQYLPNVRYLALGGNKLH-DISA-LKELTNL 87

Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE 369
            +L L+ N   S         +NL  + L  N LQ    G    L  ++  L+L+  QL+
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQ 146

Query: 370 GQIPRSFGRLCNLREISLSD 389
                 F +L NL E+ LS 
Sbjct: 147 SLPKGVFDKLTNLTELDLSY 166

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 40/199 (20%)

Query: 581 RTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
            T+ +S+            +    +L   + +              +  +   N+     
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVT-DAVT---QNELNSIDQIIANNSDIKSV 56

Query: 641 IP-DCWMNFLYLRVLNLGNNNFTGNLPPSLG---SLGSLTLLHLQKN---SLSGRIPESL 693
                  N   +R L LG N         +     L +LT L L  N   SL   + + L
Sbjct: 57  QGIQYLPN---VRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKL 108

Query: 694 SNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFDGQFPTELCFL 745
           +N   L  L +  NQ    +P  + +K +++  LNL  N        +FD         L
Sbjct: 109 TN---LKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------L 156

Query: 746 TSLQILDLGYNNLSGAIPK 764
           T+L  LDL YN L  ++P+
Sbjct: 157 TNLTELDLSYNQLQ-SLPE 174

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 51/164 (31%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 191 ENSELYVDNLSWLP-----GLSLLQHLDLGGVNLGK----AFDWSLAINSLSSLRVLRLS 241
           E  +L    L+ L      GL+ L  L+L    L       FD       L+ L  L L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD------LTELGTLGLA 91

Query: 242 GCQLDHFHPPPIV--NISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGS 298
             QL     P  V  +++ +  L L  NQ    SL  S VF  L+ L  L L +N  Q S
Sbjct: 92  NNQLASL--PLGVFDHLTQLDKLYLGGNQLK--SLP-SGVFDRLTKLKELRLNTNQLQ-S 145

Query: 299 IPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           IP G    LT+L+ L LS N   S           L  I+L  N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 11/158 (6%)

Query: 236 RVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSND 294
             L L    L          ++ ++ L+L  NQ      + + VF  L+ L  L L +N 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL---QTLSAGVFDDLTELGTLGLANNQ 94

Query: 295 FQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWL-ASFSNLVHISLRSNSLQGSITGFLA 352
              S+P+G+  +LT L  L L  N    S+P+ +    + L  + L +N LQ    G   
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 353 NLSASIEVLDLSSQQLEGQIPR-SFGRLCNLREISLSD 389
            L+ +++ L LS+ QL+  +P  +F RL  L+ I+L  
Sbjct: 153 KLT-NLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFG 188

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 25/143 (17%)

Query: 628 QVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKN--- 683
           + L+L++   +      +     L  LNL  N     L   +   L  L  L L  N   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 684 SLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN--------IFD 735
           SL   + + L+    L  L + GNQ    +P+ + ++ + +  L L +N         FD
Sbjct: 97  SLPLGVFDHLTQ---LDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 736 GQFPTELCFLTSLQILDLGYNNL 758
                    LT+LQ L L  N L
Sbjct: 153 K--------LTNLQTLSLSTNQL 167

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 24/123 (19%)

Query: 652 RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKN---SLSGRIPESLSNCNRLVSLNMDGNQ 708
             L+L +         +   L  LT L+L  N   +LS  + + L+    L +L +  NQ
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE---LGTLGLANNQ 94

Query: 709 FSGDIPTWIGEKFSSMVILNLRSN--------IFDGQFPTELCFLTSLQILDLGYNNLSG 760
            +  +P  + +  + +  L L  N        +FD         LT L+ L L  N L  
Sbjct: 95  LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------LTKLKELRLNTNQLQ- 144

Query: 761 AIP 763
           +IP
Sbjct: 145 SIP 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 48/208 (23%), Positives = 71/208 (34%), Gaps = 60/208 (28%)

Query: 262 LDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDF 319
           LDL S      S      F GL+ L +L+L  N  Q ++  G+  +LT L  L L+ N  
Sbjct: 40  LDLQSTGLATLS---DATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN-- 93

Query: 320 NSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRL 379
                  LAS    V   L                   ++ L L   QL+      F RL
Sbjct: 94  ------QLASLPLGVFDHL-----------------TQLDKLYLGGNQLKSLPSGVFDRL 130

Query: 380 CNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLF 439
             L+E+ L+  ++              I              F  LT       +L +L 
Sbjct: 131 TKLKELRLNTNQL------------QSIPAG----------AFDKLT-------NLQTLS 161

Query: 440 LSHNSISGLIPSSLGGLSSLERVVLSNN 467
           LS N +  +   +   L  L+ + L  N
Sbjct: 162 LSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 12/130 (9%)

Query: 262 LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS 321
           L       ++    LS    L    +L L +N+ +  I   L  + +LR L L  N    
Sbjct: 30  LHGMIPPIEKMDATLST---LKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI-K 83

Query: 322 SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE--GQIPRSFGRL 379
            I N  A    L  + +  N +  S++G +  L  ++ VL +S+ ++   G+I      L
Sbjct: 84  KIENLDAVADTLEELWISYNQIA-SLSG-IEKLV-NLRVLYMSNNKITNWGEI-DKLAAL 139

Query: 380 CNLREISLSD 389
             L ++ L+ 
Sbjct: 140 DKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 72/221 (32%)

Query: 304 QNLTSLRHLDLSYNDFN--SSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL 361
              T    ++L +        +   L++     H++L +N+++             I  L
Sbjct: 20  VVATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIE------------KISSL 66

Query: 362 DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKI 421
                            + NLR +SL        I +I ++ +                 
Sbjct: 67  S---------------GMENLRILSLG----RNLIKKIENLDAVA--------------- 92

Query: 422 FGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANL 481
                       +L+ L++S+N I+ L  S +  L +L  + +SNN +  +     LA L
Sbjct: 93  -----------DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 482 SKLVSFDVSGNALTLKVGPDWIPPF----------QLEKLD 512
            KL    ++GN L      +                L+KLD
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 33/186 (17%)

Query: 560 LNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESID-LSNNAFSGSISPV 618
           L+     I      LS     + + LS+NN+         ++ S+  + N          
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIE--------KISSLSGMEN---------- 71

Query: 619 LCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLL 678
                   L++L+L  N    +I +       L  L +  N    +L   +  L +L +L
Sbjct: 72  --------LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVL 120

Query: 679 HLQKNSLSG-RIPESLSNCNRLVSLNMDGNQFSGDI-PTWIGEKFSSMVILNLRS-NIFD 735
           ++  N ++     + L+  ++L  L + GN    D        ++   V+  L +    D
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Query: 736 GQFPTE 741
           G     
Sbjct: 181 GMPVDV 186

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI 713
           L+         +  +L +L +   L L  N++  +I  SLS    L  L++  N     I
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 714 PTWIGEKFSSMVILNLRSN-IFDGQFPTELCFLTSLQILDLGYNNLSGAIP----KCISN 768
              +     ++  L +  N I      + +  L +L++L +  N ++          +  
Sbjct: 86  EN-LDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 769 LSAMVTVDYPLGDTHPGITDCSLYRSCL 796
           L  ++    PL + +      S YR  +
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLS 182
           K++ +L   +   +L LS N     I +   L  M  L+ L+L     K  I +      
Sbjct: 39  KMDATLSTLKACKHLALSTN----NIEKISSLSGMENLRILSLGRNLIKK-IENLDAVAD 93

Query: 183 KLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSG 242
            L+ L +  N    + +LS +  L  L+ L +   N    +     + +L  L  L L+G
Sbjct: 94  TLEELWISYN---QIASLSGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAG 149

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 198 DNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNIS 257
           D+L  LPG   L  L +      +  +    +  L  LR L +    L    P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 258 SISVLDLSSNQFDQNSLVLSW-VFGLSNLVYLDLGSNDFQ 296
            +S L+LS N  +     LSW      +L  L L  N   
Sbjct: 81  RLSRLNLSFNALE----SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 281 GLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLR 339
           G  NL  L + +      + +  L+ L  LR+L +  +      P+       L  ++L 
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 340 SNSLQGSITGFLANLSASIEVLDLSSQQL 368
            N+L+      +  L  S++ L LS   L
Sbjct: 89  FNALESLSWKTVQGL--SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 6e-06
 Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 12/110 (10%)

Query: 174 IPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLG----KAFDWSLAI 229
             H L     L  L +     L    L  L GL  L++L +    L      AF      
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH----- 77

Query: 230 NSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWV 279
                L  L LS   L+      +    S+  L LS N    +   L W+
Sbjct: 78  -FTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSC-ALRWL 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 11/102 (10%)

Query: 840 EIPVEVTDLVALRSLNLSYNHFSGRIPD-SIGAMKSIEVIDFSNNQLSEEIPRSVSNLTF 898
           +    +     L  L +        +    +  +  +  +    + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 899 LNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRN 940
           L+ LNLS+N           L+S       G  L    LS N
Sbjct: 82  LSRLNLSFN----------ALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNW-LASFSNLVHISLRSNSLQGSITGFLANLSA 356
                L    +L  L +        +    L     L ++++  + L+  +     + + 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 357 SIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQD 395
            +  L+LS   LE    ++   L +L+E+ LS   +   
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCS 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 4/110 (3%)

Query: 578 TGLRTVDLSSNNLSGTLPLISF--QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENN 635
            G   +  + +    +L  +     L  + + N      +      G+  EL+ L +  +
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKS 66

Query: 636 SFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSL 685
                 PD +     L  LNL  N    +L        SL  L L  N L
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 571 IPNLSKATGLRTVDLSSNNLSGTLPLISF----QLESIDLSNNAFSGSISPVLCNGMRGE 626
           + +L  A  L  + + +      L L       +L ++ +  +     ++P   +     
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR- 81

Query: 627 LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT 662
           L  LNL  N+    +    +  L L+ L L  N   
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 651 LRVLNLGNNNFTGNLPP-SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQF 709
           L  L + N     +L    L  LG L  L + K+ L    P++     RL  LN+  N  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 710 S 710
            
Sbjct: 93  E 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 30/146 (20%)

Query: 372 IPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGH 431
                    NL E+ + + +  Q +                            L      
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLE----------------LRD-----LRGLGE---- 57

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
              L +L +  + +  + P +      L R+ LS N L+  LS   +  LS L    +SG
Sbjct: 58  ---LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSG 112

Query: 492 NALTLKVGPDWIPPFQLEKLDLQSCH 517
           N L       W+  ++ E L      
Sbjct: 113 NPLHCSCALRWLQRWEEEGLGGVPEQ 138

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 26/108 (24%)

Query: 664 NLPPSLGSLGSLTLLHLQKNSLSGRIP-ESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFS 722
           +    L    +LT L+++       +    L     L +L +  +               
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-------------- 67

Query: 723 SMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
              +  +  + F             L  L+L +N L     K +  LS
Sbjct: 68  ---LRFVAPDAFHF--------TPRLSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGGGIPRF-LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKL 184
               L   ++L  L +        +    L  +G+L+ L +  +G + + P       +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 185 QYLDLVENSELYVDNLSWLPGLSL----LQHLDLGG 216
             L+L  N       L  L   ++    LQ L L G
Sbjct: 83  SRLNLSFN------ALESLSWKTVQGLSLQELVLSG 112

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 23/124 (18%)

Query: 228 AINSLSSLRVLRLSGCQLDHFHPPPIV--NISSISVLDLSSNQ--------FDQNSLVLS 277
             +SL +L+ L L   QL     P  V  +++ ++VLDL +NQ        FD+      
Sbjct: 59  VFDSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR------ 110

Query: 278 WVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS 337
               L +L  L +  N     +P G++ LT L HL L  N   S         S+L H  
Sbjct: 111 ----LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165

Query: 338 LRSN 341
           L  N
Sbjct: 166 LFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 21/129 (16%)

Query: 236 RVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ--------FDQNSLVLSWVFGLSNLVY 287
           ++L L   Q+    P    ++ ++  L L SNQ        FD           L+ L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------LTQLTV 92

Query: 288 LDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGS 346
           LDLG+N     +P  +   L  L+ L +  N   + +P  +   ++L H++L  N L+  
Sbjct: 93  LDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSI 150

Query: 347 ITGFLANLS 355
             G    LS
Sbjct: 151 PHGAFDRLS 159

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 628 QVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL-GSLGSLTLLHLQKN--- 683
           Q+L L +N  +   P  + + + L+ L LG+N     LP  +  SL  LT+L L  N   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 684 SLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN----IFDGQFP 739
            L   + + L +   L  L M  N+ +  +P  I E+ + +  L L  N    I  G F 
Sbjct: 102 VLPSAVFDRLVH---LKELFMCCNKLTE-LPRGI-ERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 740 TELCFLTSLQILDLGYNN 757
                L+SL    L + N
Sbjct: 157 ----RLSSLTHAYL-FGN 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 27/118 (22%)

Query: 236 RVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ--------FDQNSLVLSWVFGLSNLVY 287
             L L G Q     P  + N   ++++DLS+N+        F            ++ L+ 
Sbjct: 34  TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSN----------MTQLLT 82

Query: 288 LDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLV---HISLRSN 341
           L L  N  +  IP      L SLR L L  ND  S +P    +F++L    H+++ +N
Sbjct: 83  LILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI-SVVPE--GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS---LRSNSLQ 344
           L L  N F   +P  L N   L  +DLS N   S++ N   SFSN+  +    L  N L+
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQ--SFSNMTQLLTLILSYNRLR 91

Query: 345 GSITGFLANLSASIEVLDLSSQQLEGQIPR-SFGRLCNLREISLSD 389
                    L  S+ +L L    +   +P  +F  L  L  +++  
Sbjct: 92  CIPPRTFDGLK-SLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGA 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 236 RVLRLSGCQLDHFHPPPIVN-ISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSN 293
             L L+  +L       +   +  +  L+L  NQ    + +    F G S++  L LG N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL---TGIEPNAFEGASHIQELQLGEN 88

Query: 294 DFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLV---HISLRSN 341
             +  I   +   L  L+ L+L  N   S +     SF +L     ++L SN
Sbjct: 89  KIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMP--GSFEHLNSLTSLNLASN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 18/154 (11%)

Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRV 237
           L  +  L  L +   + L +           L+ L++    L  +    +  + L +L  
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP----RPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 238 LRLSGCQLDHFHPPPIVNISSI---------SVLDLSSNQF-DQNSLVLSWVFGLSNLVY 287
           L L     D+     +     +           L +   +  +    +      L  L  
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 288 LDLGSNDFQGS----IPVGLQNLTSLRHLDLSYN 317
           +D+ +          +   +  +  L+ +++ YN
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 6e-05
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 830 IDLSKNNFSGEIPVEV-------TDLVALRSLNLSYNHFSGRIPDSIGA---MKSIEVID 879
           + +   ++  +  + V            L+ L +        + +       +  +E +D
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 880 FSNNQLS----EEIPRSVSNLTFLNLLNLSYNYLSGE 912
            S   L+      +   V  +  L  +N+ YNYLS E
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 9e-05
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 26/220 (11%)

Query: 441 SHNSISGLIPSSLGGLSSLERVVLSNNTLKGY-LSEIHLANLSKLVSFDVSGNALTLKVG 499
             + I+  I  +    +  E +   +   +   +S I   +LS ++      N L +K  
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182

Query: 500 PDW-IPPFQ---LEKLDLQSCHLGPTFPFWLLSQNV--LGYLDIS--------RSGIQDT 545
            +  I       L+ L++ S  L  +    +L  ++  L  L +            +   
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPN-LSKA---TGLRTVDLSSNNLS--GTLPLISF 599
            P    +  P L +L   ++     +     ++     L T+D+S+  L+  G   L+  
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 600 -----QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLEN 634
                 L+ I++  N  S  +   L   +  ++ V + + 
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQE 342

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 38/198 (19%)

Query: 255 NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDL 314
            IS I  +DLS        L    + G +NL                G +   +L+ L++
Sbjct: 155 EISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI--------------GKKPRPNLKSLEI 200

Query: 315 SYNDFNSSIPNWLAS--FSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQI 372
                  S+   +      NL  + L          G +                     
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK------------ 248

Query: 373 PRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKI----FGHLTSQ 428
                R  NL+ + + D +    + E+     S I  +LE+ D++   +       L   
Sbjct: 249 ----DRFPNLKWLGIVDAEEQNVVVEMF--LESDILPQLETMDISAGVLTDEGARLLLDH 302

Query: 429 IGHFKSLDSLFLSHNSIS 446
           +   K L  + + +N +S
Sbjct: 303 VDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 4e-04
 Identities = 25/215 (11%), Positives = 57/215 (26%), Gaps = 46/215 (21%)

Query: 572 PNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLN 631
           P L     L  + +   N           L+S+++ +     S+   +       L+ L 
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225

Query: 632 LENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSL--GSLGSLTLLHLQKNSLSGRI 689
           L                 Y+ V + G +       P        +L  L +        +
Sbjct: 226 L-----------------YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268

Query: 690 PESLSNC---NRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLT 746
            E         +L ++++     + +                             +  + 
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGAR---------------------LLLDHVDKIK 307

Query: 747 SLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
            L+ +++ YN LS         L   + +   + D
Sbjct: 308 HLKFINMKYNYLSDE---MKKELQKSLPMKIDVSD 339

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 26/93 (27%)

Query: 261 VLDLSSNQ--------FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRH 311
            L L++NQ        FD           L NL  L   SN    +IP G+   LT L  
Sbjct: 37  RLWLNNNQITKLEPGVFDH----------LVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQ 85

Query: 312 LDLSYNDFNSSIPNWLASFSNLV---HISLRSN 341
           LDL+ N    SIP    +F NL    HI L +N
Sbjct: 86  LDLNDNHL-KSIPR--GAFDNLKSLTHIYLYNN 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 26/133 (19%)

Query: 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ--------FDQ----NSLVL---- 276
           +    L L    L          ++S++ L L  N+        F++      L L    
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 277 -----SWVF-GLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPN-WLA 328
                + VF  L+ L  L L +N  Q S+P G+   LT L+ L L  N    S+P+    
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFD 145

Query: 329 SFSNLVHISLRSN 341
             ++L +I L  N
Sbjct: 146 RLTSLQYIWLHDN 158

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 70/328 (21%)

Query: 224 DWSLAINSLSSLRVLRLSGCQLDHFHPPPI-----VNISSISVLDLSSNQF-DQNSLVLS 277
           +   +   LSSLR L L+G ++       +         ++  ++L+S Q        L 
Sbjct: 63  NQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL 122

Query: 278 WVFGLSNLVYLDLGSNDF--QGSIPVG---LQNLTSLRHLDLSYNDFNSS----IPNWLA 328
            V        L L  N    +    +    L +   +  L LS N   ++    +   LA
Sbjct: 123 PV--FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180

Query: 329 SFSNLVHISLRSNSLQGSITGFLANL---SASIEVLDLSSQQLEGQIPRSFGRLCNLRE- 384
             +++ H+SL    L       LA     +  ++ L+++                   + 
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY--------------NGAGDT 226

Query: 385 --ISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH 442
             ++L+         E+L ++ + +S         G ++   L         +       
Sbjct: 227 AALALARAAREHPSLELLHLYFNELSS-------EGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 443 NSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN---------- 492
            ++      S      L  V  + N+      + HL    +L+  D+  +          
Sbjct: 280 TAV------SEYWSVILSEVQRNLNSWDRARVQRHL----ELLLRDLEDSRGATLNPWRK 329

Query: 493 ALTLKVGPDWIPPFQLEKLDLQSCHLGP 520
           A  L+V  +      +  L  Q    G 
Sbjct: 330 AQLLRVEGE------VRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 40/264 (15%), Positives = 71/264 (26%), Gaps = 36/264 (13%)

Query: 134 QHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
             L  L+L+G          + ++  L                       L  ++L    
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAV--LGS-----------------GRHALDEVNLASCQ 112

Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLG----KAFDWSLAINSLSSLRVLRLSGCQL---- 245
                  + LP     + L L   +LG    K     L  +    +  LRLS   L    
Sbjct: 113 LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ-CQITTLRLSNNPLTAAG 171

Query: 246 -DHFHPPPIVNISSISVLDLSSNQF-DQNSLVLSWVFGL-SNLVYLDLGSNDFQGS---- 298
                     N +S++ L L      D+   +L+        L  L++  N    +    
Sbjct: 172 VAVLMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230

Query: 299 IPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASI 358
           +    +   SL  L L +N+ +S     L           R        T      S  +
Sbjct: 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVIL 290

Query: 359 EVLDLSSQQLEGQIPRSFGRLCNL 382
             +  +    +    +    L   
Sbjct: 291 SEVQRNLNSWDRARVQRHLELLLR 314

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 50/355 (14%), Positives = 102/355 (28%), Gaps = 63/355 (17%)

Query: 420 KIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLA 479
            +   L   I +  +L++       +  L    L     L+  +  +   +         
Sbjct: 13  AVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLD-HLFFHYEFQN--QRFSAE 69

Query: 480 NLSKLVSFDVSGNALT----------LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQ 529
            LS L   +++G  +T          L           L++++L SC L P     LL  
Sbjct: 70  VLSSLRQLNLAGVRMTPVKCTVVAAVLGS-----GRHALDEVNLASCQLDPAGLRTLLPV 124

Query: 530 N-VLGYLDISRSGIQDTVPARFWEA----SPQLYFLNFSNSRINGE-IPNLSKA----TG 579
                 L +  + +         +       Q+  L  SN+ +    +  L +     T 
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 580 LRTVDLSSNNLS--GTLPL-----ISFQLESIDLSNNAFSGSISPVLCNGMRG--ELQVL 630
           +  + L    L   G   L      + QL+ ++++ N    + +  L    R    L++L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 631 NLENNSFS-------GEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSL----------- 672
           +L  N  S        ++         + V        +      L  +           
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR 304

Query: 673 ----GSLTLLHLQKNSLS----GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGE 719
                 L L  L+ +  +     R  + L     + +L            +W   
Sbjct: 305 VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 39/215 (18%), Positives = 64/215 (29%), Gaps = 31/215 (14%)

Query: 135 HLNYLDLSGNSFGGG----IPRFLGSMGKLKYLNLSG--AGFKGM--IPHQLGNLSKLQY 186
            +  L LS N         +   L     + +L+L     G +G+  +  QL    +LQ 
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215

Query: 187 LDLVEN--SELYVDNLSW-LPGLSLLQHLDLGGVNLGKA-----FDWSLAINSLSSLRVL 238
           L++  N   +     L+        L+ L L    L         D   A    + + V 
Sbjct: 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275

Query: 239 RLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQ-- 296
              G             +S    + LS  Q + NS   + V     L+  DL  +     
Sbjct: 276 LTEGTA-----------VSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATL 324

Query: 297 --GSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLAS 329
                   L+    +R L        S   +W   
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 54/184 (29%)

Query: 601 LESIDLSNNAFSGSISPVLCNGMR---GELQVLNLENNSFSGEIPDCWMNFL----YLRV 653
           L  ++L+    +     V+   +      L  +NL +       P      L      R 
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARK 130

Query: 654 LNLGNNNFTGNLPPSLGSLGS--------LTLLHLQKNSLSGR----IPESLSNCNRLVS 701
           L L  N+     P +   L          +T L L  N L+      + E L+    +  
Sbjct: 131 LGLQLNSLG---PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 702 LNMDGNQFSGDIPTWIGEK----FSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN 757
           L++            +G++     ++     L  N               LQ L++ YN 
Sbjct: 188 LSLLHTG--------LGDEGLELLAAQ----LDRN-------------RQLQELNVAYNG 222

Query: 758 LSGA 761
               
Sbjct: 223 AGDT 226

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 26/93 (27%)

Query: 261 VLDLSSNQ--------FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRH 311
           VL L  NQ        FD+          L+ L  LDL +N     +P G+   LT L  
Sbjct: 34  VLYLYDNQITKLEPGVFDR----------LTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQ 82

Query: 312 LDLSYNDFNSSIPNWLASFSNLV---HISLRSN 341
           L L+ N    SIP    +F NL    HI L +N
Sbjct: 83  LSLNDNQL-KSIPR--GAFDNLKSLTHIWLLNN 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 261 VLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYND 318
            L+L SN+          VF  L+ L  L L  N  Q S+P G+   LT L  L L  N 
Sbjct: 32  RLELESNKLQSLP---HGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK 87

Query: 319 FNSSIPNWL-ASFSNLVHISLRSNSLQGSITGFLANLS 355
              S+PN +    + L  ++L +N L+    G    L+
Sbjct: 88  L-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1011
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-23
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-11
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 99.1 bits (245), Expect = 4e-23
 Identities = 73/316 (23%), Positives = 117/316 (37%), Gaps = 19/316 (6%)

Query: 32  CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCC--KWSGVVCDN--FTGHVLELRLG 87
           C   +++ALL+ KKDL +P+  L SW       DCC   W GV+CD    T  V  L L 
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 88  NPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFG 147
               +    +  P+  S+    Y         +   G I P++     L+YL ++  +  
Sbjct: 59  G--LNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 148 GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLS 207
           G IP FL  +  L  L+ S     G +P  + +L  L  +    N        S+     
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSN 267
           L   + +    L      + A  +L+ +          +       V   S         
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVD------LSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 268 QFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWL 327
             +  +  L  V    NL  LDL +N   G++P GL  L  L  L++S+N+    IP   
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287

Query: 328 ASFSNLVHISLRSNSL 343
            +       +  +N  
Sbjct: 288 GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.8 bits (208), Expect = 3e-18
 Identities = 69/276 (25%), Positives = 101/276 (36%), Gaps = 12/276 (4%)

Query: 670 GSLGSLTLLHLQKNSLSGR--IPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727
                +  L L   +L     IP SL+N   L  L + G             K + +  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 728 NLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787
            +      G  P  L  + +L  LD  YN LSG +P  IS+L  +V + +        I 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTD 847
           D     S L    + S          +       T   L         N        +  
Sbjct: 167 DSYGSFSKLFTSMTISR--------NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 848 LVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYN 907
                       +        +G  K++  +D  NN++   +P+ ++ L FL+ LN+S+N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 908 YLSGEIPTSTQLQSFDASCFIGND-LCGSPLSRNCT 942
            L GEIP    LQ FD S +  N  LCGSPL   CT
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.9 bits (203), Expect = 1e-17
 Identities = 65/291 (22%), Positives = 108/291 (37%), Gaps = 15/291 (5%)

Query: 600 QLESIDLSNNAFSGSISPVLCNGMRGELQV--LNLENNSFSG--EIPDCWMNFLYLRVLN 655
            L S   + +  + +   VLC+      +V  L+L   +      IP    N  YL  L 
Sbjct: 23  TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82

Query: 656 L-GNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIP 714
           + G NN  G +PP++  L  L  L++   ++SG IP+ LS    LV+L+   N  SG +P
Sbjct: 83  IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 715 TWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVT 774
             I     ++V +    N   G  P      + L        N              +  
Sbjct: 143 PSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201

Query: 775 VDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSK 834
           VD          +          +     + +      +   +            +DL  
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG--------LDLRN 253

Query: 835 NNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
           N   G +P  +T L  L SLN+S+N+  G IP   G ++  +V  ++NN+ 
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.8 bits (182), Expect = 5e-15
 Identities = 61/328 (18%), Positives = 95/328 (28%), Gaps = 32/328 (9%)

Query: 394 QDISEILDIFSSCISD-RLESWDMTG----CKIFGHLTSQIGHFKSLDSLFLSHNSISGL 448
           QD   +L I     +   L SW  T         G L         +++L LS  ++   
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 449 --IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPF 506
             IPSSL  L  L  + +                           N L   + P      
Sbjct: 66  YPIPSSLANLPYLNFLYIGGI------------------------NNLVGPIPPAIAKLT 101

Query: 507 QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSR 566
           QL  L +   ++    P +L     L  LD S + +  T+P         +      N  
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 567 INGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGE 626
                 +    + L T    S N        +F   ++   + + +             +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 627 LQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS 686
                    +              L  L+L NN   G LP  L  L  L  L++  N+L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 687 GRIPESLSNCNRLVSLNMDGNQFSGDIP 714
           G IP+   N  R        N+     P
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191
             ++LN LDL  N   G +P+ L  +  L  LN+S     G IP Q GNL +        
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300

Query: 192 NSEL 195
           N  L
Sbjct: 301 NKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 4e-07
 Identities = 52/263 (19%), Positives = 92/263 (34%), Gaps = 29/263 (11%)

Query: 358 IEVLDLSSQQLEG--QIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWD 415
           +  LDLS   L     IP S   L  L  + +  +             +     +L    
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLY 107

Query: 416 MTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSE 475
           +T   + G +   +   K+L +L  S+N++SG +P S+  L +L  +    N + G + +
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 476 IHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNV---- 531
            + +      S  +S N LT K+ P +           ++   G     +   +N     
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 532 ------------------LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN 573
                             L  LD+  + I  T+P    +    L+ LN S + + GEIP 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQ 286

Query: 574 LSKATGLRTVDLSSNNLSGTLPL 596
                       ++N      PL
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.7 bits (221), Expect = 1e-19
 Identities = 74/401 (18%), Positives = 135/401 (33%), Gaps = 46/401 (11%)

Query: 521 TFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGL 580
            F    L++ +     + ++ + DTV         Q+  L      I   I  +     L
Sbjct: 15  IFTDTALAEKMK--TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIK-SIDGVEYLNNL 68

Query: 581 RTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
             ++ S+N L+   PL +  +L  I ++NN  +          + G     N   +    
Sbjct: 69  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 640 EIPDCWMNFLYL-------------RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLS 686
           +                          L   +          L +L +L  L +  N +S
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 687 GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLT 746
                +      L SL    NQ S   P  I    +++  L+L  N         L  LT
Sbjct: 189 DISVLA--KLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLT 241

Query: 747 SLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPI 806
           +L  LDL  N +S   P  +S L+ +  +          +    +    +      +   
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTELK---------LGANQIS--NISPLAGLTALT 288

Query: 807 EKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIP 866
                  + +++   + L  +  + L  NN S   PV    L  L+ L  + N  S    
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--V 344

Query: 867 DSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYN 907
            S+  + +I  +   +NQ+S+  P  ++NLT +  L L+  
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 3e-17
 Identities = 55/366 (15%), Positives = 124/366 (33%), Gaps = 23/366 (6%)

Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQNLTS 308
                ++  ++ L             +  V  L+NL  ++  +N      P+  L  L  
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKS----IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVD 92

Query: 309 LRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL 368
           +   +    D          +   L +  +       ++T       +S  + D+S+   
Sbjct: 93  ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152

Query: 369 EGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQ 428
              + +            L+++   + +    +  S        +   +       ++  
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212

Query: 429 IGH--FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVS 486
                  +LD L L+ N +      +L  L++L  + L+NN +        L+ L+KL  
Sbjct: 213 TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN---LAPLSGLTKLTE 267

Query: 487 FDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQ-NVLGYLDISRSGIQDT 545
             +  N +      +  P   L  L     +         +S    L YL +  + I D 
Sbjct: 268 LKLGANQI-----SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF-QLESI 604
            P        +L  L F+N++++  + +L+  T +  +    N +S   PL +  ++  +
Sbjct: 323 SPVSSL---TKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 378

Query: 605 DLSNNA 610
            L++ A
Sbjct: 379 GLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 3e-17
 Identities = 70/359 (19%), Positives = 120/359 (33%), Gaps = 36/359 (10%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
              + +L      I  +    +  L++L ++  SNN L        L NL+KLV   ++ 
Sbjct: 43  LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNN 97

Query: 492 NALTLKVGPDWIPPFQLE------KLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT 545
           N +        +              D+             LS N +  +          
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 546 VPARFWEASPQLYFLNFSNSRINGEIPNL-------SKATGLRTVDLSSNNLSGTLPL-I 597
             +   + +      N +         N        +K T L ++  ++N +S   PL I
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 598 SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLG 657
              L+ + L+ N      +          L  L+L NN  S   P   +    L  L LG
Sbjct: 218 LTNLDELSLNGNQLKDIGTLASLT----NLTDLDLANNQISNLAPLSGLT--KLTELKLG 271

Query: 658 NNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWI 717
            N  +      L  L +LT L L +N         +SN   L  L +  N  S   P   
Sbjct: 272 ANQISN--ISPLAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISPV-- 325

Query: 718 GEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVD 776
               + +  L   +N       + L  LT++  L  G+N +S   P  ++NL+ +  + 
Sbjct: 326 -SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 3e-17
 Identities = 71/376 (18%), Positives = 133/376 (35%), Gaps = 39/376 (10%)

Query: 128 PSLLHFQHLNYLDLSGNSFGGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ 185
            S      +  L         GI     +  +  L  +N S      + P  L NL+KL 
Sbjct: 38  VSQTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLV 91

Query: 186 YLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAI------NSLSSLRVLR 239
            + +  N    +  L+ L  L+ L   +    ++    + +         N++S +  L 
Sbjct: 92  DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 151

Query: 240 LSGCQLDHFHPPPIVNISSISVL--DLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
                        + ++  ++ L      +        +S +  L+NL  L   +N    
Sbjct: 152 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 211

Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
             P+    LT+L  L L+ N         LAS +NL  + L +N +       L+ L+  
Sbjct: 212 ITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT-K 264

Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMT 417
           +  L L + Q+    P     L  L  ++  ++  +Q      DI        L    + 
Sbjct: 265 LTELKLGANQISNISP-----LAGLTALTNLELNENQLE----DISPISNLKNLTYLTLY 315

Query: 418 GCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH 477
              I     S +     L  LF ++N +S    SSL  L+++  +   +N +        
Sbjct: 316 FNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD---LTP 368

Query: 478 LANLSKLVSFDVSGNA 493
           LANL+++    ++  A
Sbjct: 369 LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.4 bits (202), Expect = 4e-17
 Identities = 57/362 (15%), Positives = 128/362 (35%), Gaps = 29/362 (8%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
           L  +  L       + SI  G++ L +L  ++ S N      P  L + + LV I + +N
Sbjct: 43  LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 98

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
            +              + + +     ++     +      L   ++SD+     ++ +  
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158

Query: 402 IF-------SSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLG 454
           +           +++      +          S +    +L+SL  ++N IS + P  + 
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 218

Query: 455 GLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQ 514
             ++L+ + L+ N LK   +   LA+L+ L   D++ N ++           +L +L L 
Sbjct: 219 --TNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNL--APLSGLTKLTELKLG 271

Query: 515 SCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNL 574
           +  +    P   L+      L+ ++                 L +L    + I+   P +
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFNNISDISP-V 325

Query: 575 SKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLE 633
           S  T L+ +  ++N +S    L +   +  +   +N  S              +  L L 
Sbjct: 326 SSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT----RITQLGLN 381

Query: 634 NN 635
           + 
Sbjct: 382 DQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 6e-16
 Identities = 44/262 (16%), Positives = 79/262 (30%), Gaps = 17/262 (6%)

Query: 134 QHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
                LDL  N           ++  L  L L       + P     L KL+ L L +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPI 253
              +            Q L +    + K         +   +  L  +  +         
Sbjct: 91  LKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLD 313
             +  +S + ++          L       +L  L L  N         L+ L +L  L 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 314 LSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIP 373
           LS+N  ++     LA+  +L  + L +N L     G   +    I+V+ L +  +     
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH--KYIQVVYLHNNNISAIGS 259

Query: 374 RSF------GRLCNLREISLSD 389
             F       +  +   +SL  
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 4e-15
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 7/230 (3%)

Query: 532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNL 590
              LD+  + I   +    ++    L+ L   N++I+   P   +    L  + LS N L
Sbjct: 33  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 591 SGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLY 650
                 +   L+ + +  N  +     V     +  +  L       SG     +     
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
           L  + + + N T  +P  L    SLT LHL  N ++     SL   N L  L +  N  S
Sbjct: 152 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG 760
                 +        +    + +   + P  L     +Q++ L  NN+S 
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 5e-13
 Identities = 44/274 (16%), Positives = 88/274 (32%), Gaps = 22/274 (8%)

Query: 346 SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS 405
            +     +L     +LDL + ++       F  L NL  + L + K+S+           
Sbjct: 21  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLS 465
                LE   ++  ++           + L         +   + + L  +  +E     
Sbjct: 81  -----LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 466 NNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFW 525
             +            + KL    ++   +T    P  +PP  L +L L    +       
Sbjct: 136 LKSSGIENGAFQ--GMKKLSYIRIADTNIT--TIPQGLPP-SLTELHLDGNKITKVDAAS 190

Query: 526 LLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDL 585
           L   N L  L +S +     V       +P L  L+ +N+++      L+    ++ V L
Sbjct: 191 LKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249

Query: 586 SSNNLSGTLPLISF----------QLESIDLSNN 609
            +NN+S  +    F              + L +N
Sbjct: 250 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 1e-12
 Identities = 45/236 (19%), Positives = 81/236 (34%), Gaps = 12/236 (5%)

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
            +   LDL +N          +NL +L  L L  N  +   P   A    L  + L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 343 LQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDI 402
           L          +  +++ L +   ++       F  L  +  + L    +     E    
Sbjct: 91  L----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERV 462
                  +L    +    I    T   G   SL  L L  N I+ +  +SL GL++L ++
Sbjct: 147 QGMK---KLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 463 VLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHL 518
            LS N++    +    AN   L    ++ N L             ++ + L + ++
Sbjct: 201 GLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 4e-12
 Identities = 45/290 (15%), Positives = 91/290 (31%), Gaps = 39/290 (13%)

Query: 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
             +L+L NN  T        +L +L  L L  N +S   P + +   +L  L +  NQ  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
                         V  N  + +    F         +  L       SG        + 
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 771 AMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALI 830
            +         ++  I D ++  + +P                         +   +  +
Sbjct: 151 KL---------SYIRIADTNI--TTIP-----------------------QGLPPSLTEL 176

Query: 831 DLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP 890
            L  N  +      +  L  L  L LS+N  S     S+     +  +  +NN+L  ++P
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVP 235

Query: 891 RSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASC--FIGNDLCGSPLS 938
             +++  ++ ++ L  N +S           ++     + G  L  +P+ 
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 53/274 (19%), Positives = 96/274 (35%), Gaps = 17/274 (6%)

Query: 121 KFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGN 180
           K     +    + ++L+ L L  N      P     + KL+ L LS    K +       
Sbjct: 42  KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT 101

Query: 181 LSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRL 240
           L +L+  +            S   GL+ +  ++LG   L  +   + A   +  L  +R+
Sbjct: 102 LQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 241 SGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIP 300
           +   +      P     S++ L L  N+  +     + + GL+NL  L L  N       
Sbjct: 158 ADTNITTI---PQGLPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDN 212

Query: 301 VGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSA---- 356
             L N   LR L L+ N     +P  LA    +  + L +N++    +            
Sbjct: 213 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 357 -SIEVLDLSSQQLEGQ--IPRSFGRLCNLREISL 387
            S   + L S  ++     P +F  +     + L
Sbjct: 272 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 55/337 (16%), Positives = 97/337 (28%), Gaps = 67/337 (19%)

Query: 380 CNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLF 439
           C+LR +  SD+         L+     +       D+   KI         + K+L +L 
Sbjct: 10  CHLRVVQCSDLG--------LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 61

Query: 440 LSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVG 499
           L +N IS + P +   L  LER+ LS N LK    ++                       
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM----------------------- 98

Query: 500 PDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYF 559
                  +L   + +   +  +    L                              +  
Sbjct: 99  --PKTLQELRVHENEITKVRKSVFNGLNQMI-------------------------VVEL 131

Query: 560 LNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVL 619
                     E         L  + ++  N++     +   L  + L  N  +   +  L
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL 191

Query: 620 CNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLH 679
                  L  L L  NS S        N  +LR L+L NN      P  L     + +++
Sbjct: 192 KGLNN--LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVY 248

Query: 680 LQKNSLSG------RIPESLSNCNRLVSLNMDGNQFS 710
           L  N++S         P   +       +++  N   
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 6e-08
 Identities = 41/259 (15%), Positives = 84/259 (32%), Gaps = 15/259 (5%)

Query: 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNI 733
            L ++      L  ++P+ L        L++  N+ +            ++  L L +N 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNK 66

Query: 734 FDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYR 793
                P     L  L+ L L  N L     K    L  +   +  +      + +     
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 794 SCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRS 853
             +         +    L   G E      +  ++ I ++  N +  IP  +    +L  
Sbjct: 127 IVVE--------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTE 175

Query: 854 LNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEI 913
           L+L  N  +     S+  + ++  +  S N +S     S++N   L  L+L+ N L    
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

Query: 914 PTSTQLQSFDASCFIGNDL 932
                 +         N++
Sbjct: 236 GGLADHKYIQVVYLHNNNI 254

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 7e-14
 Identities = 52/257 (20%), Positives = 92/257 (35%), Gaps = 7/257 (2%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
                 + L GN           +   L  L L       +       L+ L+ LDL +N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 193 SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP 252
           ++L   + +   GL  L  L L     G           L++L+ L L    L       
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLD--RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHL 312
             ++ +++ L L  N+   +S+      GL +L  L L  N      P   ++L  L  L
Sbjct: 149 FRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 313 DLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQI 372
            L  N+ ++     LA    L ++ L  N            L A ++    SS ++   +
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 373 PRSFGRLCNLREISLSD 389
           P+      +L+ ++ +D
Sbjct: 265 PQRLAGR-DLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 39/296 (13%), Positives = 81/296 (27%), Gaps = 36/296 (12%)

Query: 346 SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS 405
            +      + A+ + + L   ++      SF    NL  + L    +++  +      + 
Sbjct: 22  GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLS 465
                L                       L +L L    +  L P    GL++L+ + L 
Sbjct: 82  LEQLDLSDNAQLRSVDPAT----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 466 NNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFW 525
           +N L+    +                          +     L  L L    +       
Sbjct: 138 DNALQALPDDT-------------------------FRDLGNLTHLFLHGNRISSVPERA 172

Query: 526 LLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDL 585
               + L  L + ++ +    P  F +    +    F+N+        L+    L+ + L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 586 SSNNLSGTLPLISF--QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
           + N              L+    S++    S+   L         +  L  N   G
Sbjct: 233 NDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG-----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 43/261 (16%), Positives = 82/261 (31%), Gaps = 11/261 (4%)

Query: 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
            + + L  N  +     S  +  +LT+L L  N L+     + +    L  L++  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
             +          +  L+L         P     L +LQ L L  N L         +L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 771 AMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALI 830
            +  +                    L R     +        +          L  +  +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-------VAHVHPHAFRDLGRLMTL 206

Query: 831 DLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP 890
            L  NN S      +  L AL+ L L+ N +      +      ++    S++++   +P
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLP 265

Query: 891 RSVSNLTFLNLLNLSYNYLSG 911
           + ++     +L  L+ N L G
Sbjct: 266 QRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 8e-09
 Identities = 49/310 (15%), Positives = 86/310 (27%), Gaps = 58/310 (18%)

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
           +    + L  N          +   +L  L L  N             + L  + L  N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 343 LQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDI 402
              S+                         P +F  L  L  + L    + +     L  
Sbjct: 92  QLRSV------------------------DPATFHGLGRLHTLHLDRCGLQE-----LGP 122

Query: 403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERV 462
                   L+   +    +            +L  LFL  N IS +   +  GL SL+R+
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 463 VLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTF 522
           +L  N +   +      +L +L++  +  N L+        P   L+ L L         
Sbjct: 183 LLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 523 PFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRT 582
               L                             L     S+S +   +P   +  G   
Sbjct: 242 RARPLWAW--------------------------LQKFRGSSSEVPCSLP--QRLAGRDL 273

Query: 583 VDLSSNNLSG 592
             L++N+L G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 36/237 (15%), Positives = 70/237 (29%), Gaps = 27/237 (11%)

Query: 560 LNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPV 618
           +    +RI+            L  + L SN L+         L  ++  + + +  +  V
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 619 L--CNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLT 676
                   G L  L+L+        P  +     L+ L L +N        +   LG+LT
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 677 LLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWI------------------- 717
            L L  N +S     +    + L  L +  N+ +   P                      
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 718 ----GEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
                    ++  L L  N +             LQ      + +  ++P+ ++   
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 37/287 (12%), Positives = 66/287 (22%), Gaps = 35/287 (12%)

Query: 653 VLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGD 712
             +         +P  + +  +   + L  N +S     S   C  L  L +  N  +  
Sbjct: 15  TTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 713 IPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAM 772
                        +    +       P     L  L  L L                   
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG--------------- 116

Query: 773 VTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDL 832
                            +L    L      + P +    +     L             L
Sbjct: 117 ----LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL------------FL 160

Query: 833 SKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRS 892
             N  S         L +L  L L  N  +   P +   +  +  +    N LS     +
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 893 VSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDL-CGSPLS 938
           ++ L  L  L L+ N    +                 +++ C  P  
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.2 bits (144), Expect = 9e-11
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 6/178 (3%)

Query: 581 RTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE 640
            TVD +   L      I      + L++N      S     G    L  L L+ N  +G 
Sbjct: 11  TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG-LFGRLPHLVKLELKRNQLTGI 69

Query: 641 IPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLV 700
            P+ +    +++ L LG N            L  L  L+L  N +S  +P S  + N L 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 701 SLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNL 758
           SLN+  N F+ +           +   +L         P++   +  +QI DL ++  
Sbjct: 130 SLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.2 bits (127), Expect = 5e-09
 Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 8/123 (6%)

Query: 652 RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711
           RVL+L + + T      L  L  +T L L  N L    P +L+    L  L    N    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 712 DIPTWIGEKFSSMVILNLRSN-IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
                       +  L L +N +        L     L +L+L  N+L          L+
Sbjct: 58  VDGVAN---LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLA 113

Query: 771 AMV 773
            M+
Sbjct: 114 EML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 287 YLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGS 346
            L L   D   ++   L+ L  + HLDLS+N   +       + + L  + +   S    
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNAL 55

Query: 347 ITGFLANLSASIEVLDLSSQQLEG-QIPRSFGRLCNLREISLSDVKMSQDISEILDIFS 404
                      ++ L L + +L+     +       L  ++L    + Q+      +  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 581 RTVDLSSNNLSGTLPLISF-QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSG 639
           R + L+  +L+    L     +  +DLS+N             +     +  L+ +  + 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASDNAL 55

Query: 640 EIPDCWMNFLYLRVLNLGNNNFTG-NLPPSLGSLGSLTLLHLQKNSLSG------RIPES 692
           E  D   N   L+ L L NN          L S   L LL+LQ NSL        R+ E 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 693 LSNCNRLVS 701
           L + + +++
Sbjct: 116 LPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 16/133 (12%)

Query: 360 VLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGC 419
           VL L+ + L   +     +L  +  + LS  ++      +  +    +            
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ--------AS 51

Query: 420 KIFGHLTSQIGHFKSLDSLFLSHNSISGL-IPSSLGGLSSLERVVLSNNTLKGYLSEI-- 476
                    + +   L  L L +N +        L     L  + L  N+L         
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

Query: 477 ---HLANLSKLVS 486
               L ++S +++
Sbjct: 112 LAEMLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 12/130 (9%)

Query: 236 RVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDF 295
           RVL L+   L       +  +  ++ LDLS N+        +    L+ L  L++     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR------ALPPALAALRCLEVLQASD 52

Query: 296 QGSIPV-GLQNLTSLRHLDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQG--SITGFL 351
                V G+ NL  L+ L L  N     +    L S   LV ++L+ NSL     I   L
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 352 ANLSASIEVL 361
           A +  S+  +
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 560 LNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVL 619
           L+ ++  +   + +L +   +  +DLS N L    P ++       L  +  +      +
Sbjct: 3   LHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 620 CNGMRGELQVLNLENNSF-SGEIPDCWMNFLYLRVLNLGNNNFTG--NLPPSLGSL 672
            N  R   Q L L NN           ++   L +LNL  N+      +   L  +
Sbjct: 62  ANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 24/114 (21%)

Query: 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIP---------------------DS 868
           + L+  + +  +   +  L+ +  L+LS+N      P                     D 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 869 IGAMKSIEVIDFSNNQLSE-EIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQS 921
           +  +  ++ +   NN+L +    + + +   L LLNL  N L  E     +L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query: 261 VLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFN 320
           VL L+         VL  +  L  + +LDL  N  +   P  L  L  L  L  S N   
Sbjct: 2   VLHLAHKDLT----VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE 56

Query: 321 SSIPNWLASFSNLVHISLRSNSLQG-SITGFLANLSASIEVLDLSSQQL---EGQIPRSF 376
           +       +   L  + L +N LQ  +    L +    + +L+L    L   EG   R  
Sbjct: 57  NVDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEGIQERLA 113

Query: 377 GRLCNLREI 385
             L ++  I
Sbjct: 114 EMLPSVSSI 122

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 33/195 (16%), Positives = 50/195 (25%), Gaps = 11/195 (5%)

Query: 150 IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLL 209
           +P  L        L+LS           L   ++L  L+L       +     LP L  L
Sbjct: 25  LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 210 QHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQF 269
                   +L        A+  L        S           +  +             
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL--------YLKGN 134

Query: 270 DQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLAS 329
           +  +L    +     L  L L +N+        L  L +L  L L  N    +IP     
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFG 193

Query: 330 FSNLVHISLRSNSLQ 344
              L    L  N   
Sbjct: 194 SHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 42/222 (18%), Positives = 64/222 (28%), Gaps = 16/222 (7%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGA-GFKGMIPHQLGNLSKLQYLDLVE 191
            +    L LS N         L    +L  LNL  A   K  +   L  L  L       
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 192 NSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPP 251
            S   +        +  +    L  + LG                   L G +L    P 
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL-------YLKGNELKTLPPG 142

Query: 252 PIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
            +     +  L L++N      L    + GL NL  L L  N    +IP G      L  
Sbjct: 143 LLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 312 LDLSYNDFN-----SSIPNWLASFSNLVHISLRSNSLQGSIT 348
             L  N +           WL   +  V++  +   ++   +
Sbjct: 200 AFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTS 241

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 39/205 (19%), Positives = 59/205 (28%), Gaps = 25/205 (12%)

Query: 575 SKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLEN 634
           SK      V+    NL+   P +      + LS N         L    R  L  LNL+ 
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTR--LTQLNLDR 64

Query: 635 NSFSGEIPDCWMNFLYLRVLNLGNN---------------------NFTGNLPPSLGSLG 673
              +    D  +  L    L+                           T     +L  LG
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNI 733
            L  L+L+ N L    P  L+   +L  L++  N  +      +     ++  L L+ N 
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENS 183

Query: 734 FDGQFPTELCFLTSLQILDLGYNNL 758
                P        L    L  N  
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 8/183 (4%)

Query: 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSG 491
            K    L LS N +     ++L   + L ++ L    L     +  L  L  L       
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 492 NALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFW 551
                 +         L  LD+    L       L     L  L +  + ++   P    
Sbjct: 90  Q----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 552 EASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQ---LESIDLSN 608
                      +N+        L+    L T+ L  N+L  T+P   F    L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 609 NAF 611
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 30/186 (16%), Positives = 46/186 (24%), Gaps = 12/186 (6%)

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS-YNDFNSSIPNWLASFSNLVHISLRSN 341
            +   L L  N         L   T L  L+L         +   L     L     +  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
           SL        A     +    L+S  L         +   L+   L  +           
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLER 461
                         +    +       +   ++LD+L L  NS+   IP    G   L  
Sbjct: 151 EK----------LSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPF 199

Query: 462 VVLSNN 467
             L  N
Sbjct: 200 AFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 27/206 (13%), Positives = 63/206 (30%), Gaps = 46/206 (22%)

Query: 329 SFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLS 388
             ++ + ++    +L    T    +L     +L LS   L      +      L +++L 
Sbjct: 8   KVASHLEVNCDKRNL----TALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 389 DVKMSQDISEI----------------------------------------LDIFSSCIS 408
             ++++   +                                         L + +    
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 409 DRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNT 468
             L+   + G ++       +     L+ L L++N+++ L    L GL +L+ ++L  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 469 LKGYLSEIHLANLSKLVSFDVSGNAL 494
           L              L    + GN  
Sbjct: 184 LYTIPKGFF--GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 38/223 (17%), Positives = 65/223 (29%), Gaps = 18/223 (8%)

Query: 719 EKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYP 778
            K +S + +N          P +L       IL L  N L       +   + +  ++  
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN-- 61

Query: 779 LGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFS 838
           L                L       + ++   L+ +         +    L  L      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 839 GEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTF 898
           G   ++           L  N      P  +     +E +  +NN L+E     ++ L  
Sbjct: 122 GLGELQEL--------YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 899 LNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNC 941
           L+ L L  N L   IP       F +       L G+P   NC
Sbjct: 174 LDTLLLQENSLY-TIPKGF----FGSHLLPFAFLHGNPWLCNC 211

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 8e-04
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 844 EVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLN 903
           EV+ + +   +N    + +  +P  +   K   ++  S N L      ++   T L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 904 LSYNY 908
           L    
Sbjct: 62  LDRAE 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 41/271 (15%), Positives = 88/271 (32%), Gaps = 10/271 (3%)

Query: 603 SIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT 662
           ++DL+          V    +   +       +     + +   +   ++ ++L N+   
Sbjct: 4   TLDLTGKNLHPD---VTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 59

Query: 663 GN-LPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
            + L   L     L  L L+   LS  I  +L+  + LV LN+ G         +  +  
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG---FSEFALQTL 116

Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
            S        N+      TE     ++  +      L+ +  +     S + T+     +
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 782 THPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEI 841
                   S+          F     +   + +  ++   T+L L  +  L      G +
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 842 PVEVTDLVA--LRSLNLSYNHFSGRIPDSIG 870
           P     L+   L  L ++ +HF+     +IG
Sbjct: 237 PDGTLQLLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 37/236 (15%), Positives = 83/236 (35%), Gaps = 10/236 (4%)

Query: 262 LDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFN- 320
           LDL+      +  V   +     ++      +     +     +   ++H+DLS +    
Sbjct: 5   LDLTGKNL--HPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 321 SSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLC 380
           S++   L+  S L ++SL    L   I   LA  S ++  L+LS      +         
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSS 119

Query: 381 NLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFL 440
             R   L+         + + +  + +S+ +   +++G +     +      +   +L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 441 SHNSISGLIPSS----LGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
              S S ++ +        L+ L+ + LS        + + L  +  L +  V G 
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 53/271 (19%), Positives = 95/271 (35%), Gaps = 17/271 (6%)

Query: 361 LDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCK 420
           LDL+ + L    P   GRL +   I+    +   D      +       R++  D++   
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP----LAEHFSPFRVQHMDLSNSV 57

Query: 421 I-FGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIH-- 477
           I    L   +     L +L L    +S  I ++L   S+L R+ LS  +     +     
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 478 -----LANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVL 532
                L  L+    FD +   + + V        QL     +           +     L
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 533 GYLDISRSGIQDTVPARFWEASPQLYFLNFSN-SRINGEIP-NLSKATGLRTVDLSSNNL 590
            +LD+S S +      + +     L  L+ S    I  E    L +   L+T+ +     
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237

Query: 591 SGTLPLISFQLESIDLSNNAFSGSISPVLCN 621
            GTL L+   L  + ++ + F+    P + N
Sbjct: 238 DGTLQLLKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 35/212 (16%), Positives = 62/212 (29%), Gaps = 6/212 (2%)

Query: 128 PSLLHFQHLNYLDLSGNSF-GGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQY 186
                   + ++DLS +      +   L    KL+ L+L G      I + L   S L  
Sbjct: 40  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99

Query: 187 LDLVENSELYVD----NLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSG 242
           L+L   S          LS    L  L                   ++   +   L    
Sbjct: 100 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159

Query: 243 CQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDL-GSNDFQGSIPV 301
             L       +V      V    S+     +      F L+ L +L L    D      +
Sbjct: 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL 219

Query: 302 GLQNLTSLRHLDLSYNDFNSSIPNWLASFSNL 333
            L  + +L+ L +     + ++     +  +L
Sbjct: 220 ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 11/258 (4%)

Query: 208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSN 267
           L Q LDL G NL       L    + + R  R    Q          +   +  +DLS++
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP----LAEHFSPFRVQHMDLSNS 56

Query: 268 QFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS--YNDFNSSIPN 325
             + ++L    +   S L  L L        I   L   ++L  L+LS        ++  
Sbjct: 57  VIEVSTL-HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115

Query: 326 WLASFSNLVHISLR--SNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLR 383
            L+S S L  ++L    +  +  +   +A++S +I  L+LS  +   Q       +    
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 384 EISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLT-SQIGHFKSLDSLFLSH 442
            +   D+  S  +          ++  L+   ++ C      T  ++G   +L +L +  
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 443 NSISGLIPSSLGGLSSLE 460
               G +      L  L+
Sbjct: 235 IVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 20/272 (7%)

Query: 510 KLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRING 569
            LDL   +L P     LLSQ V+      RS +   +   F  +  ++  ++ SNS I  
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEV 60

Query: 570 EIPN--LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGEL 627
              +  LS+ + L+ + L    LS  +     +  ++   N +     S      +    
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 628 QVLNLENNSFSGEI----------PDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTL 677
             L+  N S+  +                           N   +            + L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 678 LHLQKNSLSGRIPESLSNCNRLVSLNMDG-NQFSGDIPTWIGEKFSSMVILNLRSNIFDG 736
                  L     +     N L  L++        +    +G +  ++  L +   + DG
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGIVPDG 239

Query: 737 QFPTELCFLTSLQILDLGYNNLSGAIPKCISN 768
                     +L  L +  ++ +      I N
Sbjct: 240 TLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 11/245 (4%)

Query: 163 LNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKA 222
           L+L+G   K + P   G L     +            L+       +QH+DL    +  +
Sbjct: 5   LDLTG---KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 223 FDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGL 282
               + ++  S L+ L L G +L       +   S++  L+LS         + + +   
Sbjct: 62  TLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 283 SNLVYLDLGSNDFQG------SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHI 336
           S L  L+L             ++    + +T L       N   S +   +    NLVH+
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 337 SLRSNSLQGSITGFLANLSASIEVLDLSS-QQLEGQIPRSFGRLCNLREISLSDVKMSQD 395
            L  + +  +           ++ L LS    +  +     G +  L+ + +  +     
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 396 ISEIL 400
           +  + 
Sbjct: 241 LQLLK 245

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 38/296 (12%), Positives = 86/296 (29%), Gaps = 23/296 (7%)

Query: 437 SLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTL 496
           +L L+  ++    P   G L S   +                 +  ++   D+S + + +
Sbjct: 4   TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 497 KVGPDWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASP 555
                 +    +L+ L L+   L       L   + L  L++S          +   +S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 556 QLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSI 615
                   +   +    ++  A    +  ++  NLSG    +     S  +        +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 616 SPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGN-NNFTGNLPPSLGSLGS 674
                  +                +    +    YL+ L+L    +        LG + +
Sbjct: 181 DLSDSVML--------------KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 675 LTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR 730
           L  L +      G +            L ++ + F+      IG K +   I  ++
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQE-IWGIK 278

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 34/218 (15%), Positives = 76/218 (34%), Gaps = 17/218 (7%)

Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
            L+N + +  G ++   ++     +L  +  L        ++I   +   +NL+ + L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKD 72

Query: 341 NSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
           N +              +E+     + +         +  +L    ++DV     +S + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 401 DIF--------SSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSS 452
            ++         S ++       ++         + + +   L +L    N IS + P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 453 LGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS 490
           L  L +L  V L NN +        LAN S L    ++
Sbjct: 191 LASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 14/193 (7%)

Query: 282 LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPN------WLASFSNLVH 335
           L  +  L         +I  G+Q L +L  L+L  N      P            S    
Sbjct: 40  LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 336 ISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQD 395
            ++ + +   SI       +   +V  L+       +     ++ N+  ++         
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 396 ISEILDIFSSCISD--RLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSL 453
           I        + +++  +L +      KI     S +    +L  + L +N IS + P  L
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--L 213

Query: 454 GGLSSLERVVLSN 466
              S+L  V L+N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 17/216 (7%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
             +   +    ++    +      +  +  L+  G G   +    +  L+ L  L+L +N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 193 SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAI---------NSLSSLRVLRLSGC 243
               +  L  L  ++ L+       N+                     ++ L  L     
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL 303
                +    ++  +        +  +     L+ +  LS L  L    N      P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 304 QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLR 339
            +L +L  + L  N  +   P  LA+ SNL  ++L 
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 34/236 (14%), Positives = 66/236 (27%), Gaps = 26/236 (11%)

Query: 647 NFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDG 706
                  +  G +N T     +   L  +T L      ++    E +   N L+ L +  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 707 NQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCI 766
           NQ +   P             NL            L  ++++  L         +     
Sbjct: 73  NQITDLAPLK-----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 767 SNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYL 826
               A ++    L      IT+ S                + + L       + +T+   
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA- 180

Query: 827 VALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSN 882
                   N  S   P+    L  L  ++L  N  S   P  +    ++ ++  +N
Sbjct: 181 ------DDNKISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 24/231 (10%)

Query: 159 KLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVN 218
               +    +     +     +L  +  L            ++ + G+  L +L    + 
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT------GVTTIEGVQYLNNL----IG 67

Query: 219 LGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSW 278
           L    +    +  L +L  +       +       +           ++    +   L+ 
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 279 VFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL 338
           +  L  L             I              LS  +   S    LA+ S L  +  
Sbjct: 128 LSNLQVL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 339 RSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSD 389
             N +       LA+L  ++  + L + Q+    P       NL  ++L++
Sbjct: 181 DDNKISDIS--PLASLP-NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 56/322 (17%), Positives = 100/322 (31%), Gaps = 20/322 (6%)

Query: 600 QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN--FLYLRVLNLG 657
           Q   ++L+N   S S+  +  +     L+ L    NS + E+P+   +   L +   NL 
Sbjct: 39  QAHELELNNLGLS-SLPELPPH-----LESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 658 NNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWI 717
             +    L   LG   +      +  + S      + N +     ++  +          
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 718 GEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDY 777
            E+   +  L   + I+      +      L +  +   N        + NL  + T+  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 778 PLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALI-DLSKNN 836
                           +   R    +D  E    +      E                N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 837 FSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNL 896
            S EI        +L  LN+S N     +P        +E +  S N L+ E+P    NL
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNL 326

Query: 897 TFLNLLNLSYNYLSG--EIPTS 916
                L++ YN L    +IP S
Sbjct: 327 KQ---LHVEYNPLREFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 7e-06
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 240 LSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSI 299
                  +          S+  L++S+N+                L  L    N     +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI------ELPALPPRLERLIASFNHLA-EV 319

Query: 300 PVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNL 333
           P   +   +L+ L + YN      P+   S  +L
Sbjct: 320 P---ELPQNLKQLHVEYNPL-REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 49/327 (14%), Positives = 84/327 (25%), Gaps = 26/327 (7%)

Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLS 465
           C+  +    ++    +   L     H +SL     S NS++ L P     L SL     +
Sbjct: 35  CLDRQAHELELNNLGL-SSLPELPPHLESLV---ASCNSLTEL-PELPQSLKSLLVDNNN 89

Query: 466 NNTLKGYLSEIHLANLS-----------KLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQ 514
              L      +    +S                 +             +PP         
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 515 SCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNL 574
           +          L     +   + S   + D   +     +           +    +  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 575 SKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLEN 634
                L             L +    L  +     + +             EL       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 635 NSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLS 694
           N+ S EI         L  LN+ NN     LP        L  L    N L+  +PE   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPELPQ 324

Query: 695 NCNRLVSLNMDGNQFSG--DIPTWIGE 719
           N   L  L+++ N      DIP  + +
Sbjct: 325 N---LKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 13/88 (14%)

Query: 278 WVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS 337
                 +L  L++ +N     +P     L     L  S+N   + +P       NL  + 
Sbjct: 279 LCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPELP---QNLKQLH 330

Query: 338 LRSNSLQGSITGFLANLSASIEVLDLSS 365
           +  N L+        ++  S+E L ++S
Sbjct: 331 VEYNPLRE-----FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 550 FWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNN 609
           F   S     L + N+  N           L  +++S+N L   LP +  +LE +  S N
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFN 314

Query: 610 AFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLN 655
             +  +  +  N     L+ L++E N    E PD   +   LR+ +
Sbjct: 315 HLA-EVPELPQN-----LKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 55/338 (16%), Positives = 91/338 (26%), Gaps = 28/338 (8%)

Query: 433 KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
           +    L L++  +S L P     L SL     S N+L   L E+       L S  V  N
Sbjct: 38  RQAHELELNNLGLSSL-PELPPHLESLV---ASCNSLT-ELPEL----PQSLKSLLVDNN 88

Query: 493 ALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE 552
                     +         L+   +       L       +L I               
Sbjct: 89  ---------NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 553 ASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFS 612
            S +      +      E+ NL   T +   + S   L      +   +   ++      
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 613 GSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSL 672
               P L         +  L +   S E  +   N+L        +  F          L
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 673 GSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN 732
             L       N+ S  I         L  LN+  N+   ++P         +  L    N
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP----RLERLIASFN 314

Query: 733 IFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLS 770
               + P       +L+ L + YN L    P    ++ 
Sbjct: 315 HL-AEVPELP---QNLKQLHVEYNPLRE-FPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 42/333 (12%), Positives = 107/333 (32%), Gaps = 24/333 (7%)

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
                L+L +     S+P   +    L  L  S N   + +P       +L  + + +N+
Sbjct: 38  RQAHELELNNLGLS-SLP---ELPPHLESLVASCNSL-TELPE---LPQSLKSLLVDNNN 89

Query: 343 LQG------SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDI 396
           L+        +     + +   ++ +L +      I      L  L ++  S   ++   
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGL 456
           +++ ++        L +       +       +     +    +            L  +
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 457 SSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVG-PDWIPPFQLEKLDLQS 515
            +   ++ +   L   L  +++ +       ++  +   L V    +    +L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 516 CHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLS 575
                           L  L++S + +   +PA      P+L  L  S + +  E+P L 
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP----PRLERLIASFNHLA-EVPELP 323

Query: 576 KATGLRTVDLSSNNLSGTLPLISFQLESIDLSN 608
           +   L+ + +  N L    P I   +E + +++
Sbjct: 324 Q--NLKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 598 SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGE----IPDCWMNFLYLRV 653
           S  ++S+D+     S +    L   ++ + QV+ L++   +      I         L  
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSG 687
           LNL +N         +          +QK SL  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 1e-06
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 258 SISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG----SIPVGLQNLTSLRHLD 313
            I  LD+   +          +  L     + L            I   L+   +L  L+
Sbjct: 3   DIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 314 LSYNDFNSSIPNWLASFSNLVHISLRSNSLQG 345
           L  N+      + +          ++  SLQ 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 851 LRSLNLSYNHFS-GRIPDSIGAMKSIEVIDFSNNQLSEE----IPRSVSNLTFLNLLNLS 905
           ++SL++     S  R  + +  ++  +V+   +  L+E     I  ++     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 906 YNYLSGEIPTS 916
            N L       
Sbjct: 64  SNELGDVGVHC 74

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 6e-06
 Identities = 17/168 (10%), Positives = 40/168 (23%), Gaps = 5/168 (2%)

Query: 830 IDLSKNNFSGEIPVEVTD-LVALRSLNLSYNHFSGR----IPDSIGAMKSIEVIDFSNNQ 884
           +D+     S     E+   L   + + L     +      I  ++    ++  ++  +N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 885 LSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGNDLCGSPLSRNCTET 944
           L +     V          +    L     T        ++      L    LS N    
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 945 VPMPQDGNGEDDEDEVEWFYVSMALGCVVGFWFVIGPLIVNRRWRYMY 992
             +     G  D                      +  ++  +      
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 6e-06
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 851 LRSLNLSYNHFSGR----IPDSIGAMKSIEVIDFSNNQLSEEIPRSVS-----NLTFLNL 901
           LR L L+    S      +  ++ A  S+  +D SNN L +     +          L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 902 LNLSYNYLSGEIP 914
           L L   Y S E+ 
Sbjct: 431 LVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 9e-06
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 284 NLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFN----SSIPNWLASFSNLVHISL 338
           ++  LD+   +   +    L   L   + + L            I + L     L  ++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 339 RSNSLQG----SITGFLANLSASIEVLDLSSQQ 367
           RSN L       +   L   S  I+ L L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 28/123 (22%)

Query: 209 LQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQ 268
           +Q LD+    L  A  W+  +  L   +V+RL  C L       I +        L  N 
Sbjct: 4   IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-------LRVN- 54

Query: 269 FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-----QNLTSLRHLDLSYNDFNSSI 323
                           L  L+L SN+        +          ++ L L       + 
Sbjct: 55  --------------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

Query: 324 PNW 326
              
Sbjct: 101 CGV 103

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 651 LRVLNLGNNNFTGN-LPPSLGSLGSLTLLHLQKNSLSGR----IPESLSNCNRLVSLNMD 705
           ++ L++     +       L  L    ++ L    L+      I  +L     L  LN+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 706 GNQFSGDIPTWIGEKFSS 723
            N+        + +   +
Sbjct: 64  SNELGDVGVHCVLQGLQT 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 5e-05
 Identities = 53/482 (10%), Positives = 105/482 (21%), Gaps = 46/482 (9%)

Query: 434 SLDSLFLSHNSISGL-IPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
            + SL +    +S       L  L   + V L +      L+E    ++S  +  + +  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC----GLTEARCKDISSALRVNPA-- 56

Query: 493 ALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLS-----QNVLGYLDISRSGIQDTVP 547
                          L +L+L+S  LG      +L         +  L +    +     
Sbjct: 57  ---------------LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 548 ARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLS 607
                    L  L   +   N       +      +D         L   S    S +  
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 608 NNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPP 667
            +                ++    +       +   C +  L L    + ++N       
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 221

Query: 668 SLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727
                    L           + E         S       +   I          ++  
Sbjct: 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 281

Query: 728 NLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787
                               L    L             S         +          
Sbjct: 282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 341

Query: 788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGE----IPV 843
              L  S      +    + +            S +  L     L+  + S      +  
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQP------GSVLRVL----WLADCDVSDSSCSSLAA 391

Query: 844 EVTDLVALRSLNLSYNHFSGRIPDSIGA-----MKSIEVIDFSNNQLSEEIPRSVSNLTF 898
            +    +LR L+LS N         +          +E +   +   SEE+   +  L  
Sbjct: 392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

Query: 899 LN 900
             
Sbjct: 452 DK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 22/98 (22%), Positives = 27/98 (27%), Gaps = 9/98 (9%)

Query: 277 SWVFGLSNLVYLDLGSNDFQG----SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASF-- 330
                 S L  L L   D       S+   L    SLR LDLS N    +    L     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 331 ---SNLVHISLRSNSLQGSITGFLANLSASIEVLDLSS 365
                L  + L        +   L  L      L + S
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 12/90 (13%)

Query: 674 SLTLLHLQKNSLSGR----IPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF----SSMV 725
            L +L L    +S      +  +L   + L  L++  N         + E        + 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 726 ILNLRSNIFDGQFPTELCFL----TSLQIL 751
            L L    +  +    L  L     SL+++
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 27/115 (23%)

Query: 220 GKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWV 279
           G            S LRVL L+ C            +S  S   L+           + +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCD-----------VSDSSCSSLA-----------ATL 393

Query: 280 FGLSNLVYLDLGSNDFQGSIPVGL-----QNLTSLRHLDLSYNDFNSSIPNWLAS 329
               +L  LDL +N    +  + L     Q    L  L L    ++  + + L +
Sbjct: 394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 15/118 (12%), Positives = 27/118 (22%), Gaps = 25/118 (21%)

Query: 136 LNYLDLSGNSFG-GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSE 194
           +  LD+             L  + + + + L   G        + +              
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------------- 50

Query: 195 LYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLA---INSLSSLRVLRLSGCQLDHFH 249
                   L     L  L+L    LG      +          ++ L L  C L    
Sbjct: 51  --------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 43/318 (13%), Positives = 96/318 (30%), Gaps = 28/318 (8%)

Query: 126 INPSLLHFQHLNYLDLSGNSFGG----GIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
           +   LL    +  + LSGN+ G      +   + S   L+    S      +       L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLS 241
             L    L       V       G +  + L              L  N L      +++
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 242 GCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNL-----------VYLDL 290
               +        N   +  +    N+ +  S+        S+            +  + 
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 291 GSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
             +     +    +        +   +  +S++   L S+ NL  + L    L       
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 351 LANL-----SASIEVLDLSSQQLEGQIPRS-----FGRLCNLREISLSDVKMSQD---IS 397
           + +      +  ++ L L   ++E    R+       ++ +L  + L+  + S++   + 
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322

Query: 398 EILDIFSSCISDRLESWD 415
           EI ++FS+     L+  D
Sbjct: 323 EIREVFSTRGRGELDELD 340

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 5e-05
 Identities = 38/323 (11%), Positives = 87/323 (26%), Gaps = 29/323 (8%)

Query: 626 ELQVLNLENNSFSG--EIPDCWMNFLYLRVLNLGNNNFTGN----LPPSLGSLGSLTLLH 679
           E + L L+  +      +    +    ++ + L  N         L  ++ S   L +  
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 680 LQKNSLS----------GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNL 729
                              + ++L  C +L ++ +  N F       + +  S    L  
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 730 RSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDC 789
                +G  P     +               A P    ++                 T  
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR--SIICGRNRLENGSMKEWAKTFQ 183

Query: 790 SLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLV 849
           S       +        E    ++         +  L    +   +  S  + + +    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 850 ALRSLNLSYNHFSGRIPDSIGAM------KSIEVIDFSNNQLSEEIPRSV-----SNLTF 898
            LR L L+    S R   ++           ++ +    N++  +  R++       +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 899 LNLLNLSYNYLSGEIPTSTQLQS 921
           L  L L+ N  S E     +++ 
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 6e-05
 Identities = 34/335 (10%), Positives = 79/335 (23%), Gaps = 21/335 (6%)

Query: 284 NLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFN----SSIPNWLASFSNLVHISLR 339
           +L    + + D + S+   L    S++ + LS N         +   +AS  +L      
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 340 SNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
                  +   +      +    L   +L              +E  +  +     +  +
Sbjct: 68  DIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 400 LDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSL 459
               +                    +  +  +   L S+    N +              
Sbjct: 127 YLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIICGRNRLENGSM-------KE 177

Query: 460 ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG 519
                 ++ L   +  +      + +   +       +                 S    
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 520 PTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN------ 573
               +  L +  L    +S  G    V A     +  L  L    + I  +         
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 574 LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSN 608
             K   L  ++L+ N  S    ++    E      
Sbjct: 298 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 332

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 42/304 (13%), Positives = 87/304 (28%), Gaps = 25/304 (8%)

Query: 425 LTSQIGHFKSLDSLFLSHNSISG----LIPSSLGGLSSLERVVLSNNTLKGYLSEIHLAN 480
           + + +    S+  + LS N+I       +  ++     LE    S+        EI  A 
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 481 LSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLG-YLDISR 539
              L +        T+++  +   P   E L        P    +L +  +         
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 540 SGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISF 599
             +Q+    +  + +P L  +    +R+          T      L +  +         
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 600 QLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNN 659
               +              L +             +  S  +     ++  LR L L + 
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTF---------THLGSSALAIALKSWPNLRELGLNDC 253

Query: 660 NFTGNLPPSLG------SLGSLTLLHLQKNSLSGRIPESL-----SNCNRLVSLNMDGNQ 708
             +     ++           L  L LQ N +      +L          L+ L ++GN+
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313

Query: 709 FSGD 712
           FS +
Sbjct: 314 FSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 36/322 (11%), Positives = 87/322 (27%), Gaps = 25/322 (7%)

Query: 579 GLRTVDLSSNNLSGTLPLISF--QLESIDLSNNAFSGSISPVLCNGMRG--ELQVLNLEN 634
            L+   +++ +      ++     ++ I LS N      +  L   +    +L++    +
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 635 NS---FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPE 691
                   EIP+     L   +     +    +      +     +  L K++    +  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 692 SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQIL 751
             +         +        +            I+  R+ + +G          S ++L
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 752 DLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFL 811
                  +G  P+ I +L                  +   +        +         L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 812 VMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGA 871
            +    L       +V      +N               L++L L YN        ++  
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENI-------------GLQTLRLQYNEIELDAVRTLKT 295

Query: 872 -----MKSIEVIDFSNNQLSEE 888
                M  +  ++ + N+ SEE
Sbjct: 296 VIDEKMPDLLFLELNGNRFSEE 317

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 20/204 (9%)

Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
             +  +  +L       ++      L S+  +  + +D  S     +    N+  + L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 341 NSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
           N L                   L++ +  G +     ++ +L  +       S  +    
Sbjct: 78  NKLTDIK--------------PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLE 460
               + +    +   +          + +     LD+L L  N IS ++P  L GL+ L+
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 461 RVVLSNNTLKGYLSEIHLANLSKL 484
            + LS N +    +   L NL  L
Sbjct: 182 NLYLSKNHISDLRALAGLKNLDVL 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 23/216 (10%)

Query: 396 ISEI--LDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSL 453
           I +I   D F+  I D L+   +T       L S       +D +  +++ I  +    +
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNS-------IDQIIANNSDIKSVQG--I 64

Query: 454 GGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL 513
             L ++ ++ L+ N L        LANL  L    +  N +        +   +   L+ 
Sbjct: 65  QYLPNVTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121

Query: 514 QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN 573
                          +++    +        +   +    S +   ++        +I  
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--------DIVP 173

Query: 574 LSKATGLRTVDLSSNNLSGTLPLISF-QLESIDLSN 608
           L+  T L+ + LS N++S    L     L+ ++L +
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 28/200 (14%), Positives = 67/200 (33%), Gaps = 18/200 (9%)

Query: 692 SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQIL 751
           S       +  N+     +  +      + +S+  +   ++         + +L ++  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73

Query: 752 DLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFL 811
            L  N L+    K ++NL  +  +           +   L +                 +
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 812 VMKG---------KELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFS 862
            +           K  + + +  L  L  LS  +      V +  L  L++L LS NH S
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 863 GRIPDSIGAMKSIEVIDFSN 882
                ++  +K+++V++  +
Sbjct: 192 D--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 15/192 (7%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
           F      +L   S    +      +  +  +  + +  K +    +  L  +  L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 193 SELYVDNLSWLPGLSLLQH---------LDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243
               +  L+ L  L  L                  L         I+ ++ L  L     
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138

Query: 244 QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL 303
                +    + + S      + +  D     +  + GL+ L  L L  N     +   L
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-AL 196

Query: 304 QNLTSLRHLDLS 315
             L +L  L+L 
Sbjct: 197 AGLKNLDVLELF 208

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 7e-05
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 20/204 (9%)

Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
            L+  +   LG  +   ++     +L  +  L         SI   +   +NL  I+  +
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSN 71

Query: 341 NSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
           N L                   L +      I  +  ++ ++  ++         +    
Sbjct: 72  NQLTDIT--------------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 117

Query: 401 DIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLE 460
                 + +      +          S +    SL  L  S N ++ L P  L  L++LE
Sbjct: 118 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLE 175

Query: 461 RVVLSNNTLKGYLSEIHLANLSKL 484
           R+ +S+N +        L NL  L
Sbjct: 176 RLDISSNKVSDISVLAKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQG-SITGFLANLSASIEVL 361
             N    R LDL        I N  A+      I    N ++       L  L    + L
Sbjct: 14  YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRL----KTL 68

Query: 362 DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKI 421
            +++ ++          L +L E+ L++  +  ++ ++  + S      L          
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 422 FGHLTSQIGHFKSLDSL 438
             +    I     +  L
Sbjct: 128 KHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 10/141 (7%)

Query: 570 EIPNLSKATGLRTVDLSSNNLSGTLPLISF--QLESIDLSNNAFSGSISPVLCNGMRGEL 627
           +    + A   R +DL    +     L +   Q ++ID S+N     I  +    +   L
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRL 65

Query: 628 QVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTG----NLPPSLGSLGSLTLLHLQKN 683
           + L + NN               L  L L NN+       +   SL SL  L +L     
Sbjct: 66  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125

Query: 684 SLSGRIPESLSNCNRLVSLNM 704
           +        +    ++  L+ 
Sbjct: 126 NKKHYRLYVIYKVPQVRVLDF 146

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 844 EVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLN 903
           + T+ V  R L+L        I +    +   + IDFS+N++ +        L  L  L 
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLL 69

Query: 904 LSYNYLSGEIPTSTQLQSFDASCFIGN 930
           ++ N +        Q         + N
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTN 96

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS 710
            + L+L          P L +     +L+ + +  +  +     N   L+SLN+  N+  
Sbjct: 24  QQALDLKGLRS----DPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78

Query: 711 GDIP-TWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNL 769
                + I +K  ++ ILNL  N    +   +      L+ L L  N+LS       + +
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

Query: 770 SAMV 773
           SA+ 
Sbjct: 139 SAIR 142

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSN 293
           S + L L G + D    P +V  +   VL+  S+      ++      +  L+ L+L +N
Sbjct: 23  SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAATLRIIEE---NIPELLSLNLSNN 75

Query: 294 DFQG--SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL 351
                  +   +Q   +L+ L+LS N+  S           L  + L  NSL  +     
Sbjct: 76  RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135

Query: 352 ANLSASIEVL 361
             +SA  E  
Sbjct: 136 TYISAIRERF 145

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 555 PQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLIS---FQLESIDLSNNAF 611
                L+          P+L        ++   ++++ TL +I     +L S++LSNN  
Sbjct: 22  GSQQALDLKG---LRSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRL 77

Query: 612 SGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLP 666
                          L++LNL  N    E     +  L L  L L  N+ +    
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 28/237 (11%), Positives = 52/237 (21%), Gaps = 9/237 (3%)

Query: 234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSN 293
           S RV      ++    P  +    +   L     +     +      G  +L  +++  N
Sbjct: 9   SNRVFLCQESKVTEI-PSDL--PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQN 63

Query: 294 DFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353
           D    I   + +     H        N    N        +            I      
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDV 121

Query: 354 LSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLES 413
                    L   Q    I                 + ++++  + +   +   +   E 
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181

Query: 414 WDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLK 470
                  +                L +S   I  L    L  L  L     S   LK
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 29/211 (13%), Positives = 57/211 (27%), Gaps = 5/211 (2%)

Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN- 341
            N + L       +            L  +++S ND    I   + S    +H       
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILD 401
           +    I         +++ L +S+  ++               + + D      I     
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 402 IFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLER 461
           +  S  S  L        +I           +  +     +N++  L      G S    
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNC---AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 205

Query: 462 VVLSNNTLKGYLSEIHLANLSKLVSFDVSGN 492
           + +S   +   L    L NL KL +      
Sbjct: 206 LDISRTRIHS-LPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 22/210 (10%), Positives = 47/210 (22%), Gaps = 1/210 (0%)

Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
            ++   L                  G L+ + +S      +I   + +     +   +E 
Sbjct: 28  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 193 SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPP 252
           +   +                L      K               +L +      H     
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERN 146

Query: 253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHL 312
                S   + L  N+     +      G          +N+ +          +    L
Sbjct: 147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 313 DLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
           D+S    +S     L +   L   S  +  
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 28/233 (12%), Positives = 57/233 (24%), Gaps = 7/233 (3%)

Query: 652 RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711
           RV     +  T  +P  L    +   L      L      + S    L  + +  N    
Sbjct: 11  RVFLCQESKVT-EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 712 DIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA 771
            I   +      +  + +           E             Y  +S    K + ++  
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ----YLLISNTGIKHLPDVHK 123

Query: 772 MVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALID 831
           + ++   L D    I   ++ R+        S  +      ++           L  L  
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 832 LSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQ 884
              NN                 L++S           +  +K +      N +
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 10/64 (15%), Positives = 17/64 (26%)

Query: 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191
             Q         N+                 L++S      +  + L NL KL+      
Sbjct: 175 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234

Query: 192 NSEL 195
             +L
Sbjct: 235 LKKL 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1011
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.93
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.85
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.76
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.65
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.62
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.16

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=293.92  Aligned_cols=128  Identities=36%  Similarity=0.649  Sum_probs=106.5

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEECCCC--CCEEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99999999999511018799998568878999999866--0015735999--9659997599999998778898620132
Q 001801           31 HCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCK--WSGVVCDNFT--GHVLELRLGNPLNHPISYHTSPAQYSII  106 (1011)
Q Consensus        31 ~~~~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~~  106 (1011)
                      .|.++|++||++||+++.+|. .+++|.   .++|||.  |.||+|+...  +||+.|+|++.                 
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-----------------   60 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----------------   60 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-----------------
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-CCCCCC---CCCCCCCCCCCCEEEECCCCCEEEEEEECCCC-----------------
T ss_conf             989899999999999779998-677889---99999889488969748999479889989899-----------------


Q ss_pred             HHCCCCHHHHHCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             311351011100235776--1155452788898897889-9899987722469999978637898788888432489999
Q 001801          107 YRTYGAEYEAYERSKFGG--KINPSLLHFQHLNYLDLSG-NSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK  183 (1011)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~--~l~~~l~~l~~L~~L~Ls~-~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~  183 (1011)
                                    .+.|  .+|+.++++++|++|+|++ |.+.+.+|..++++++|++|++++|.+.+..+..+..+.+
T Consensus        61 --------------~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          61 --------------NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             --------------CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             --------------CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             --------------888888798478467533520202654333002431145420011020356434433222220111


Q ss_pred             CCEEECCCCC
Q ss_conf             9899589998
Q 001801          184 LQYLDLVENS  193 (1011)
Q Consensus       184 L~~L~Ls~n~  193 (1011)
                      |++++++.|.
T Consensus       127 L~~l~l~~N~  136 (313)
T d1ogqa_         127 LVTLDFSYNA  136 (313)
T ss_dssp             CCEEECCSSE
T ss_pred             HCCCCCCCCC
T ss_conf             0011112245

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=261.71  Aligned_cols=259  Identities=32%  Similarity=0.583  Sum_probs=235.1

Q ss_pred             CCCCEEEECCCCCCC--CCCHHHHCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             765278611442235--6790122034586876279-7343249955247785657857578251127812218999959
Q 001801          625 GELQVLNLENNSFSG--EIPDCWMNFLYLRVLNLGN-NNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVS  701 (1011)
Q Consensus       625 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  701 (1011)
                      ..++.|+++++.+.+  .+|..++++++|++|++++ |.++|.+|..++++++|++|++++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_conf             79889989899888888798478467533520202654333002431145420011020356434433222220111001


Q ss_pred             EECCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98679824213673576506998399711542554588123699988-68982273313344501225555710248999
Q 001801          702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSL-QILDLGYNNLSGAIPKCISNLSAMVTVDYPLG  780 (1011)
Q Consensus       702 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~  780 (1011)
                      +++++|.+.+.+|..+. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             CCCCCCCCCCCCCHHHC-CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf             11122455556851220-67400000023553356203121443112323102246435332433222222---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCC
Q ss_conf             99998667755446799999778865421898417502342121126799744770000274100011237644125763
Q 001801          781 DTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNH  860 (1011)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~  860 (1011)
                                                                     ..++++++.+.|.+|..++.+++++.+++++|.
T Consensus       200 -----------------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         200 -----------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             -----------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             -----------------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -----------------------------------------------233333343322222222222221112222222


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf             6222552125899987995758836534883544899899698336715004999864576576656799-888999989
Q 001801          861 FSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGN-DLCGSPLSR  939 (1011)
Q Consensus       861 l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~g~~~~~  939 (1011)
                      +++.+| .++.+++++.|++++|+++|.+|..++++++|+.||+++|+++|.||..+.++.++...+.|| .+||.|+. 
T Consensus       233 l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-  310 (313)
T d1ogqa_         233 LAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-  310 (313)
T ss_dssp             ECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-
T ss_pred             CCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC-
T ss_conf             222222-222455444444765706660876884799999897958835166898666799897886889500198988-


Q ss_pred             CCC
Q ss_conf             999
Q 001801          940 NCT  942 (1011)
Q Consensus       940 ~c~  942 (1011)
                      .|.
T Consensus       311 ~c~  313 (313)
T d1ogqa_         311 ACT  313 (313)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=4.2e-40  Score=209.65  Aligned_cols=193  Identities=29%  Similarity=0.382  Sum_probs=119.6

Q ss_pred             HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCC
Q ss_conf             01220345868762797343249955247785657857578251127812218999959986798242136735765069
Q 001801          643 DCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFS  722 (1011)
Q Consensus       643 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~  722 (1011)
                      ..+..+++++.+++++|.+++..|  +...++|+.|++++|.++. + ..+..+++|+.+++++|.+.+ ++. +. .++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~~~  263 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LAP-LS-GLT  263 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCT
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCC-C-CHHHCCCCCCHHCCCCCCCCC-CCC-CC-CCC
T ss_conf             100223532333035774478786--4445778788887777789-6-134325653410044674478-775-35-546


Q ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98399711542554588123699988689822733133445012255557102489999999866775544679999977
Q 001801          723 SMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSF  802 (1011)
Q Consensus       723 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1011)
                      +|+.|++++|.+.+..  .+..++.++.+++++|.+.+. + .+..+..+                              
T Consensus       264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~-~-~~~~~~~l------------------------------  309 (384)
T d2omza2         264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI-S-PISNLKNL------------------------------  309 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC-G-GGGGCTTC------------------------------
T ss_pred             CCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-C-CCCHHCCC------------------------------
T ss_conf             6877545674457877--323565222233232333332-2-10000246------------------------------


Q ss_pred             CCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             88654218984175023421211267997447700002741000112376441257636222552125899987995758
Q 001801          803 SDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSN  882 (1011)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~  882 (1011)
                                               +.+++++|++++..  .+..+++|+.|++++|++++ +| .++++++|+.|++++
T Consensus       310 -------------------------~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         310 -------------------------TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             -------------------------SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCS
T ss_pred             -------------------------CEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCC
T ss_conf             -------------------------76777788778984--53668988989898998999-74-670899999898979


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             8365348835448998996983367
Q 001801          883 NQLSEEIPRSVSNLTFLNLLNLSYN  907 (1011)
Q Consensus       883 N~l~~~ip~~l~~l~~L~~L~ls~N  907 (1011)
                      |++++.+|  +.++++|+.|++++|
T Consensus       361 N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         361 NQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             95899800--003999999639789

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=6.3e-39  Score=203.89  Aligned_cols=188  Identities=26%  Similarity=0.397  Sum_probs=99.6

Q ss_pred             CCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             77652786114422356790122034586876279734324995524778565785757825112781221899995998
Q 001801          624 RGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLN  703 (1011)
Q Consensus       624 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  703 (1011)
                      ++.++.+++++|.+++..|  +...++|+.|++++|.++. + +.+..+++|+.+++++|.+++..+  +..+++|+.|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             CCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCC-C-CHHHCCCCCCHHCCCCCCCCCCCC--CCCCCCCCEEE
T ss_conf             3532333035774478786--4445778788887777789-6-134325653410044674478775--35546687754


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             67982421367357650699839971154255458812369998868982273313344501225555710248999999
Q 001801          704 MDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTH  783 (1011)
Q Consensus       704 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~  783 (1011)
                      +++|++.+ ++. +. .++.++.+.+..|.+++.  ..+..+++++.+++++|++++..+  +..+++|           
T Consensus       270 l~~~~l~~-~~~-~~-~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L-----------  331 (384)
T d2omza2         270 LGANQISN-ISP-LA-GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKL-----------  331 (384)
T ss_dssp             CCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTC-----------
T ss_pred             CCCCCCCC-CCC-CC-CCCCCCCCCCCCCCCCCC--CCCCHHCCCCEEECCCCCCCCCCC--CCCCCCC-----------
T ss_conf             56744578-773-23-565222233232333332--210000246767777887789845--3668988-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCC
Q ss_conf             98667755446799999778865421898417502342121126799744770000274100011237644125763622
Q 001801          784 PGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSG  863 (1011)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  863 (1011)
                                                                  +.|++++|++++ ++ .+.++++|+.|++++|++++
T Consensus       332 --------------------------------------------~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         332 --------------------------------------------QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             --------------------------------------------CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             --------------------------------------------CEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCC
T ss_conf             --------------------------------------------989898998999-74-67089999989897995899


Q ss_pred             CCCCCCCCCCCCCEEECCCC
Q ss_conf             25521258999879957588
Q 001801          864 RIPDSIGAMKSIEVIDFSNN  883 (1011)
Q Consensus       864 ~ip~~l~~l~~L~~L~Ls~N  883 (1011)
                      .+|  +.++++|+.|++++|
T Consensus       366 l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         366 LTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG--GTTCTTCSEEECCCE
T ss_pred             CHH--HCCCCCCCEEECCCC
T ss_conf             800--003999999639789

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8e-36  Score=188.60  Aligned_cols=271  Identities=21%  Similarity=0.247  Sum_probs=150.6

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf             96898247526766897634776345445557788880000277776527861144223567901220345868762797
Q 001801          580 LRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNN  659 (1011)
Q Consensus       580 L~~L~Ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n  659 (1011)
                      .+.++.+++.++...+..+..+++|++++|.++...+..+..  +++|+.|++++|.+....|..|.+++.|+.|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~--l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCC
T ss_conf             999985599988519888999798978499189869657604--656523112344344523566527985578315687


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CCCHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf             3432499552477856578575782511278122189999599867982421--36735765069983997115425545
Q 001801          660 NFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG--DIPTWIGEKFSSMVILNLRSNIFDGQ  737 (1011)
Q Consensus       660 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~~~~~l~~L~~L~L~~N~l~~~  737 (1011)
                      +++ .+|..+  ...+..|++.+|.+.+..+..+.....+..++...|....  ..+..+ ..+++|+.+++++|.+.. 
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~~-  164 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITT-  164 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCS-
T ss_pred             CCC-CCCCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-
T ss_conf             567-676400--111323210246102344445401331100001233333467776422-345656712034677451-


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf             88123699988689822733133445012255557102489999999866775544679999977886542189841750
Q 001801          738 FPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE  817 (1011)
Q Consensus       738 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  817 (1011)
                      +|..+  .++|+.|++++|...+..+..+..++.+                                             
T Consensus       165 l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l---------------------------------------------  197 (305)
T d1xkua_         165 IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL---------------------------------------------  197 (305)
T ss_dssp             CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC---------------------------------------------
T ss_pred             CCCCC--CCCCCEEECCCCCCCCCCHHHHHCCCCC---------------------------------------------
T ss_conf             67101--7766789897886778882676413413---------------------------------------------


Q ss_pred             HHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-----
Q ss_conf             234212112679974477000027410001123764412576362225521258999879957588365348835-----
Q 001801          818 LEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRS-----  892 (1011)
Q Consensus       818 ~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-----  892 (1011)
                                ..|++++|.+++..+..+.++++|+.|+|++|.++ .+|..+..+++|+.|++++|+|+...+..     
T Consensus       198 ----------~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~  266 (305)
T d1xkua_         198 ----------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  266 (305)
T ss_dssp             ----------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             ----------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCC
T ss_conf             ----------30154455332223454334433224302554002-4631103346789898989865763810026721


Q ss_pred             -CCCCCCCCEEECCCCCCC-CCCCC
Q ss_conf             -448998996983367150-04999
Q 001801          893 -VSNLTFLNLLNLSYNYLS-GEIPT  915 (1011)
Q Consensus       893 -l~~l~~L~~L~ls~N~l~-g~ip~  915 (1011)
                       +..+.+|+.+++++|++. ..+|.
T Consensus       267 ~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         267 YNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             HHCCCCCCCEEECCCCCCCCCCCCH
T ss_conf             0021588897889899576676897

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=191.81  Aligned_cols=226  Identities=19%  Similarity=0.154  Sum_probs=138.3

Q ss_pred             EECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CC
Q ss_conf             61144223567901220345868762797343249955247785657857578251127812218999959986798-24
Q 001801          631 NLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGN-QF  709 (1011)
Q Consensus       631 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l  709 (1011)
                      ..++++++ .+|..+.  +++++|+|++|+++...+..|.+++.|+.|++++|++....+..+.++..+..++...+ .+
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             ECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             84799989-4497889--99888977488179879778641421300001344543321112122222222222210223


Q ss_pred             CCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21367357650699839971154255458812369998868982273313344501225555710248999999986677
Q 001801          710 SGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDC  789 (1011)
Q Consensus       710 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  789 (1011)
                      . .++...+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..+..++.+                 
T Consensus        94 ~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L-----------------  155 (284)
T d1ozna_          94 R-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-----------------  155 (284)
T ss_dssp             C-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------
T ss_pred             C-CCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCH-----------------
T ss_conf             5-4462010101027787568854432013533200012110200143144580574043405-----------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             55446799999778865421898417502342121126799744770000274100011237644125763622255212
Q 001801          790 SLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSI  869 (1011)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  869 (1011)
                                                            +.|++++|++++..+..|.++++|+.+++++|++++..|..|
T Consensus       156 --------------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f  197 (284)
T d1ozna_         156 --------------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (284)
T ss_dssp             --------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             --------------------------------------HHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHH
T ss_conf             --------------------------------------022314176566256665465634131421143466281676


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             5899987995758836534883544899899698336715004999
Q 001801          870 GAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPT  915 (1011)
Q Consensus       870 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  915 (1011)
                      ..+++|++||+++|++.+..|..|.++.+|+.+++++|++.|.++.
T Consensus       198 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf             6532000233333522100000235546568898119988787564

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=192.77  Aligned_cols=234  Identities=18%  Similarity=0.194  Sum_probs=161.0

Q ss_pred             CCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             765278611442235679012203458687627973432499552477856578575-7825112781221899995998
Q 001801          625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQ-KNSLSGRIPESLSNCNRLVSLN  703 (1011)
Q Consensus       625 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~  703 (1011)
                      +.++.|++++|++++..+..|.++++|++|++++|.+....+..+..++.++.+... .+.+....+..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
T ss_conf             99888977488179879778641421300001344543321112122222222222210223544620101010277875


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             67982421367357650699839971154255458812369998868982273313344501225555710248999999
Q 001801          704 MDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTH  783 (1011)
Q Consensus       704 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~  783 (1011)
                      +++|.+.. ++........+|+.+++++|.+++..+..+..++.|+.|++++|++.+..+..+.++++|           
T Consensus       112 l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-----------  179 (284)
T d1ozna_         112 LDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (284)
T ss_dssp             CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             CCCCCCCC-CCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCCC-----------
T ss_conf             68854432-013533200012110200143144580574043405022314176566256665465634-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCC
Q ss_conf             98667755446799999778865421898417502342121126799744770000274100011237644125763622
Q 001801          784 PGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSG  863 (1011)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  863 (1011)
                                                                  +.+++++|++++..|..|.++++|+.|++++|.+++
T Consensus       180 --------------------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         180 --------------------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             --------------------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --------------------------------------------CHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             --------------------------------------------131421143466281676653200023333352210


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             2552125899987995758836534883544899899698336715004999
Q 001801          864 RIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPT  915 (1011)
Q Consensus       864 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  915 (1011)
                      ..|..|+.+++|+.|++++|.+...-+.. .-...++.+....+.+.|..|.
T Consensus       216 ~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         216 LPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHCCCCCCCEEECCCH
T ss_conf             00002355465688981199887875646-9999998673888866747966

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-34  Score=180.50  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=21.7

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             8988978899899987722469999978637898788888432489999989958999
Q 001801          135 HLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN  192 (1011)
Q Consensus       135 ~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  192 (1011)
                      .+++|+|++|.++...+..|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCC
T ss_conf             9798978499189869657604656523112344344523566527985578315687

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=180.80  Aligned_cols=203  Identities=23%  Similarity=0.291  Sum_probs=147.7

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             45868762797343249955247785657857578251127812218999959986798242136735765069983997
Q 001801          649 LYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILN  728 (1011)
Q Consensus       649 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~  728 (1011)
                      ..+.+++.+++.++ .+|+.+.  ++++.|+|++|++++..+..|.++++|++|++++|+++ .+|.. . .+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCEEE
T ss_pred             CCCEEEECCCCCCC-EECCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCCCC-C-CCCCCCCCC
T ss_conf             89869980699988-6196757--68898988499289859778634565522135665444-43111-1-122321111


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11542554588123699988689822733133445012255557102489999999866775544679999977886542
Q 001801          729 LRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEK  808 (1011)
Q Consensus       729 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  808 (1011)
                      +++|++++ .+..+..+++|+.|++++|.+.+..+..+..+..+                                    
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l------------------------------------  126 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL------------------------------------  126 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC------------------------------------
T ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC------------------------------------
T ss_conf             12222211-11121222222222222231101100112222111------------------------------------


Q ss_pred             EEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             18984175023421211267997447700002741000112376441257636222552125899987995758836534
Q 001801          809 AFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEE  888 (1011)
Q Consensus       809 ~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~  888 (1011)
                                         ..+++++|.+++..+..+..++.++.+++++|++++..+..++.+++|++|||++|+|+ .
T Consensus       127 -------------------~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         127 -------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             -------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             -------------------CCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-C
T ss_conf             -------------------12212434210221233322111000000015652237200134212423430139785-5


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             88354489989969833671500499
Q 001801          889 IPRSVSNLTFLNLLNLSYNYLSGEIP  914 (1011)
Q Consensus       889 ip~~l~~l~~L~~L~ls~N~l~g~ip  914 (1011)
                      +|..+..+++|+.+++++|++.+.+.
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf             68667778889999836999878864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-32  Score=171.64  Aligned_cols=199  Identities=19%  Similarity=0.164  Sum_probs=134.3

Q ss_pred             CCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             65278611442235679012203458687627973432499552477856578575782511278122189999599867
Q 001801          626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMD  705 (1011)
Q Consensus       626 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  705 (1011)
                      .+.+++.+++.++ .+|..+.  +++++|+|++|.+++..+..|.++++|+.|+|++|+++.. | .+..+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECC
T ss_pred             CCEEEECCCCCCC-EECCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC
T ss_conf             9869980699988-6196757--6889898849928985977863456552213566544443-1-11112232111112


Q ss_pred             CCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98242136735765069983997115425545881236999886898227331334450122555571024899999998
Q 001801          706 GNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPG  785 (1011)
Q Consensus       706 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~  785 (1011)
                      +|++. .++..+. .+++|+.|++++|.+.+..+..+..+.+++.+++++|.+....+..+..++.+             
T Consensus        86 ~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l-------------  150 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-------------  150 (266)
T ss_dssp             SSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCCCC-CCCCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC-------------
T ss_conf             22221-1111212-22222222222231101100112222111122124342102212333221110-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCC
Q ss_conf             66775544679999977886542189841750234212112679974477000027410001123764412576362225
Q 001801          786 ITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRI  865 (1011)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  865 (1011)
                                                                +.+++++|++++..+..|..+++|+.|+|++|+++ .+
T Consensus       151 ------------------------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         151 ------------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             ------------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ------------------------------------------HHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC
T ss_conf             ------------------------------------------00000015652237200134212423430139785-56


Q ss_pred             CCCCCCCCCCCEEECCCCCCCC
Q ss_conf             5212589998799575883653
Q 001801          866 PDSIGAMKSIEVIDFSNNQLSE  887 (1011)
Q Consensus       866 p~~l~~l~~L~~L~Ls~N~l~~  887 (1011)
                      |+.+..+++|+.|+|++|.+.-
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCC
T ss_pred             CHHHCCCCCCCEEEECCCCCCC
T ss_conf             8667778889999836999878

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.96  E-value=2.5e-25  Score=137.03  Aligned_cols=50  Identities=20%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             8988978899899987722469999978637898788888432489999989958999
Q 001801          135 HLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN  192 (1011)
Q Consensus       135 ~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  192 (1011)
                      ++++|||+++.++ .+|+.   .++|++|++++|+++ .+|..+   .+|+.|++++|
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n   88 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNN   88 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSS
T ss_pred             CCCEEEECCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCCH---HHHHHHHHHHC
T ss_conf             9989993799988-78898---789888989999796-336203---32033266551

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-31  Score=165.52  Aligned_cols=386  Identities=21%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC---
Q ss_conf             99989958999876779998789999986876999789996--4367871299998899757997999999998799---
Q 001801          182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKA--FDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNI---  256 (1011)
Q Consensus       182 ~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l---  256 (1011)
                      .+|+.||++.+++...+-...++.+++++.|++.+|.++..  ..+..++..+++|++|++++|.++......+...   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHC
T ss_conf             98777982089588689999997677999998289999889999999998539998889795985972899999999843


Q ss_pred             --CCCCEEECCCCCCCCC--HHHHHHHHCCCCCCEEECCCCCCCCCCCCCC-----CCCCCCCEEECCCCCCCC----CC
Q ss_conf             --9865998899999997--0125753099997699956998865674013-----488999999687998988----74
Q 001801          257 --SSISVLDLSSNQFDQN--SLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-----QNLTSLRHLDLSYNDFNS----SI  323 (1011)
Q Consensus       257 --~~L~~L~Ls~n~~~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~----~~  323 (1011)
                        .+|++|++++|.++..  ..++..+..+++|++|++++|.+.......+     ..................    ..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             78877887788877543221012110000343200244433202345555443013554333222222322200110011


Q ss_pred             CHHCCCCCCCCEEECCCCCCC----CCHHHHHHHHHCCCCEEECCCCCCCCC----CCHHCCCCCCCCEEECCCCCCCCC
Q ss_conf             311028999869982388788----740068874230254786356757688----760001789988998158668851
Q 001801          324 PNWLASFSNLVHISLRSNSLQ----GSITGFLANLSASIEVLDLSSQQLEGQ----IPRSFGRLCNLREISLSDVKMSQD  395 (1011)
Q Consensus       324 ~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~  395 (1011)
                      ...+.....++.+.++.+...    ......+.........+++..+.....    ....+...+.++.+.+..+.....
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             22233332222233222212455554323433211221001241124542101101223322222210010021122334


Q ss_pred             HHHHHHHHCCCCCCCCCEEECCCCCCCC----CCCCCCCCCCCCCEEECCCCCCCCCCCCCC-----CCCCCCCEEEEEC
Q ss_conf             3577742013546776264265871022----471000599999899842775887684300-----6999674999024
Q 001801          396 ISEILDIFSSCISDRLESWDMTGCKIFG----HLTSQIGHFKSLDSLFLSHNSISGLIPSSL-----GGLSSLERVVLSN  466 (1011)
Q Consensus       396 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~  466 (1011)
                      ...............++.+++++|.+..    .....+...+.++.+++++|.+.......+     .....|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf             42011000111111100001345433212334332211123433344444333224564211101233344433332333


Q ss_pred             CCCCCC----CCHHHHCCCCCCCEEECCCCEEEEECCCCC-----CCCCCCCEEECCCCCCC----CCCCCCCCCCCCCC
Q ss_conf             845553----375543179984599912881000119998-----87445445653467679----97360025998878
Q 001801          467 NTLKGY----LSEIHLANLSKLVSFDVSGNALTLKVGPDW-----IPPFQLEKLDLQSCHLG----PTFPFWLLSQNVLG  533 (1011)
Q Consensus       467 n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~ls~~~l~----~~~~~~l~~~~~L~  533 (1011)
                      |.+...    +.. .+...++|++|++++|++.......+     .....|+.|++++|.++    ..++..+..+++|+
T Consensus       322 ~~l~~~~~~~l~~-~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         322 CSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             SCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             CCHHHHHHHHCCC-CCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             4102334432133-221101111320121013576640011122045677788989799797599999999996299889


Q ss_pred             EEECCCCCCCCCCCHHHHHHCC----CCCCCCCCCCCCC
Q ss_conf             8965899888986225764067----6430023365233
Q 001801          534 YLDISRSGIQDTVPARFWEASP----QLYFLNFSNSRIN  568 (1011)
Q Consensus       534 ~L~Ls~n~l~~~~~~~~~~~~~----~L~~L~ls~n~l~  568 (1011)
                      +|++++|.+++.....+...+.    .|+.|++.++.+.
T Consensus       401 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             898999969879999999999747886678989898789

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.95  E-value=3.8e-24  Score=131.19  Aligned_cols=54  Identities=31%  Similarity=0.398  Sum_probs=23.4

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             23764412576362225521258999879957588365348835448998996983367150
Q 001801          849 VALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS  910 (1011)
Q Consensus       849 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  910 (1011)
                      ++|+.|++++|.++ .+|..   +++|+.|++++|+++ .+|..   +++|+.|++++|+++
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC
T ss_conf             98898979799168-35665---487998989999687-54532---288898987699189

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.8e-25  Score=137.77  Aligned_cols=202  Identities=21%  Similarity=0.351  Sum_probs=102.5

Q ss_pred             EECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             61144223567901220345868762797343249955247785657857578251127812218999959986798242
Q 001801          631 NLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS  710 (1011)
Q Consensus       631 ~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  710 (1011)
                      +++.+++++..  .+..+.+|+.|++.+|.++. ++ .+..+++|+.|++++|.+++..|  +..+++++.+++++|.++
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HHCCCCCCCCC--CHHHCCCCCEEECCCCCCCC-CH-HHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCC
T ss_conf             84888767757--98784886899777999976-64-57448888376357853202543--112334320121112222


Q ss_pred             CCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13673576506998399711542554588123699988689822733133445012255557102489999999866775
Q 001801          711 GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCS  790 (1011)
Q Consensus       711 ~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~  790 (1011)
                       .++ .+. .+++|+.+.++++...+.  ..+...+.++.+.++++.+....+  +...+.                   
T Consensus        99 -~i~-~l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~-------------------  152 (227)
T d1h6ua2          99 -NVS-AIA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTN-------------------  152 (227)
T ss_dssp             -CCG-GGT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTT-------------------
T ss_pred             -CCC-CCC-CCCCCCCCCCCCCCCCCC--CHHCCCCCHHHHHCHHHHHCHHHH--HCCCCC-------------------
T ss_conf             -222-222-222221221222443311--000002301222000000000000--010211-------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             54467999997788654218984175023421211267997447700002741000112376441257636222552125
Q 001801          791 LYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIG  870 (1011)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  870 (1011)
                                                          ++.+++++|.+++..  .++++++|+.|+|++|.+++ +| .++
T Consensus       153 ------------------------------------L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~  192 (227)
T d1h6ua2         153 ------------------------------------LQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLA  192 (227)
T ss_dssp             ------------------------------------CCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGG
T ss_pred             ------------------------------------CCCCCCCCCCCCCCH--HHCCCCCCEECCCCCCCCCC-CH-HHC
T ss_conf             ------------------------------------100233333333100--10564633564458884177-85-344


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             899987995758836534883544899899698336
Q 001801          871 AMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY  906 (1011)
Q Consensus       871 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  906 (1011)
                      .+++|++|++++|++++..|  +.++++|+.|++++
T Consensus       193 ~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCCCCCEEECCCCCCCCCCC--CCCCCCCCEEEEEC
T ss_conf             79999989795996899802--03699989897129

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=138.91  Aligned_cols=79  Identities=13%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             EEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             7997447700002741000112376441257636222552125899987995758836534883544899899698336
Q 001801          828 ALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY  906 (1011)
Q Consensus       828 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  906 (1011)
                      ..+++++|+++...+..+......+.+++++|.++...+..|.++++|+.|++++|+++...+..|.+++.|+.+++++
T Consensus       156 ~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             EEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             0122001233332222222011101212354324642478866899999898979928945977973771341476788

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.6e-25  Score=136.94  Aligned_cols=201  Identities=13%  Similarity=0.037  Sum_probs=98.3

Q ss_pred             CCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEE
Q ss_conf             6527861144223567901220345868762797343249-95524778565785757-825112781221899995998
Q 001801          626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNL-PPSLGSLGSLTLLHLQK-NSLSGRIPESLSNCNRLVSLN  703 (1011)
Q Consensus       626 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~  703 (1011)
                      +++.|++++|.++...+.+|.++++|++|++++|.+...+ +..|..++.++.+.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88999876991896496686146432321102211242010011222222222111112343222222122222222223


Q ss_pred             CCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6798242136735765069983997115425545881236999-886898227331334450122555571024899999
Q 001801          704 MDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLT-SLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDT  782 (1011)
Q Consensus       704 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~  782 (1011)
                      +++|.+...-+......+..+..+...++.+....+..+.+++ .++.+++++|+++...+..+ +...+          
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l----------  178 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQL----------  178 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCE----------
T ss_pred             CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC-CCHHH----------
T ss_conf             4211112554333222111122222221211122222222223310012200123333222222-20111----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCC
Q ss_conf             99866775544679999977886542189841750234212112679974477000027410001123764412576362
Q 001801          783 HPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFS  862 (1011)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  862 (1011)
                                                                  .+.+++++|+++...+..|.++++|+.|++++|+++
T Consensus       179 --------------------------------------------~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         179 --------------------------------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             --------------------------------------------EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             --------------------------------------------HCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf             --------------------------------------------012123543246424788668999998989799289


Q ss_pred             CCCCCCCCCCCCCCEEECC
Q ss_conf             2255212589998799575
Q 001801          863 GRIPDSIGAMKSIEVIDFS  881 (1011)
Q Consensus       863 g~ip~~l~~l~~L~~L~Ls  881 (1011)
                      ...+..|.+++.|+.++++
T Consensus       215 ~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         215 SLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCSSSCTTCCEEESSSEE
T ss_pred             CCCHHHHCCCCCCCCCCCC
T ss_conf             4597797377134147678

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.9e-24  Score=131.76  Aligned_cols=58  Identities=24%  Similarity=0.316  Sum_probs=27.3

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             27888988978899899987722469999978637898788888432489999989958999
Q 001801          131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN  192 (1011)
Q Consensus       131 ~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  192 (1011)
                      ..+.+|++|++.+|.++. + ..+.++++|++|++++|.+.+..|  +.++++|+++++++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHCCCCCEEECCCCCCCC-C-HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCC
T ss_conf             784886899777999976-6-457448888376357853202543--112334320121112

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=4.2e-25  Score=135.92  Aligned_cols=109  Identities=24%  Similarity=0.318  Sum_probs=48.5

Q ss_pred             CCCEEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf             586876279734324-9955247785657857578251127812218999959986798242136735765069983997
Q 001801          650 YLRVLNLGNNNFTGN-LPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILN  728 (1011)
Q Consensus       650 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~  728 (1011)
                      ++++|+|++|++++. .+..|.++++|+.|++++|.+....+..+..+++|++|++++|++. .+|...+.++++|++|+
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEE
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCHHHHHCCCCCCCCC
T ss_conf             87889848987755302002578762721301363221212122211222210100355344-34979980797465524


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             1154255458812369998868982273313
Q 001801          729 LRSNIFDGQFPTELCFLTSLQILDLGYNNLS  759 (1011)
Q Consensus       729 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  759 (1011)
                      |++|.+++..+..|..+++|+.++|++|++.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf             5774535359778568753342000364434

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.2e-23  Score=128.73  Aligned_cols=72  Identities=21%  Similarity=0.347  Sum_probs=42.1

Q ss_pred             EEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             997447700002741000112376441257636222552125899987995758836534883544899899698336
Q 001801          829 LIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY  906 (1011)
Q Consensus       829 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  906 (1011)
                      .++++.|.+++  +..+..+++|+.+++++|.+++. + .++++++|+.|++++|+++. +| .+..+++|+.|++++
T Consensus       138 ~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         138 SLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCC
T ss_conf             21122233345--43100013321001346430256-4-53678989999897998998-72-116999989997118

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=2.2e-23  Score=127.42  Aligned_cols=166  Identities=23%  Similarity=0.362  Sum_probs=89.3

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCE
Q ss_conf             03458687627973432499552477856578575782511278122189999599867982421367357650699839
Q 001801          647 NFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVI  726 (1011)
Q Consensus       647 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~  726 (1011)
                      .+.+|+.|++++|.++. ++ .+..+++|+.|++++|++++..  .+..+++|++|++++|+++ .+|. +. .+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSS-LK-DLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGG-GT-TCTTCCE
T ss_pred             HHCCCCEEECCCCCCCC-CH-HHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCC-CCCC-CC-CCCCCCC
T ss_conf             95484589782798887-44-4764899898769896025860--1135862120143333321-2221-21-2221112


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97115425545881236999886898227331334450122555571024899999998667755446799999778865
Q 001801          727 LNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPI  806 (1011)
Q Consensus       727 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  806 (1011)
                      |++++|.+..  ...+..++.++.+++++|.+++.  ..+..++.|                                  
T Consensus       117 L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L----------------------------------  158 (210)
T d1h6ta2         117 LSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKL----------------------------------  158 (210)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC----------------------------------
T ss_pred             CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC----------------------------------
T ss_conf             2345653221--12201111122211222333454--310001332----------------------------------


Q ss_pred             CCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             4218984175023421211267997447700002741000112376441257636222552125899987995758
Q 001801          807 EKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSN  882 (1011)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~  882 (1011)
                                           +.+++++|++++. + .+.++++|+.|+|++|.++. +| .+..+++|+.|+|++
T Consensus       159 ---------------------~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         159 ---------------------DTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---------------------SEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ---------------------CCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCC
T ss_conf             ---------------------1001346430256-4-53678989999897998998-72-116999989997118

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=5.8e-24  Score=130.30  Aligned_cols=104  Identities=22%  Similarity=0.209  Sum_probs=36.7

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEECC
Q ss_conf             87627973432499552477856578575782511-27812218999959986798242136735765069983997115
Q 001801          653 VLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSG-RIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRS  731 (1011)
Q Consensus       653 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~  731 (1011)
                      .++.++++++ .+|..+.  ++++.|+|++|++++ ..+..|.++++|+.|++++|.+.+..+..+. .+++|+.|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~-~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCS
T ss_pred             EEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCEEEECC
T ss_conf             9997089967-0298989--78788984898775530200257876272130136322121212221-122221010035


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             42554588123699988689822733133
Q 001801          732 NIFDGQFPTELCFLTSLQILDLGYNNLSG  760 (1011)
Q Consensus       732 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  760 (1011)
                      |+++...|..|.++++|+.|+|++|++++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             53443497998079746552457745353

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=1.6e-23  Score=128.16  Aligned_cols=52  Identities=29%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             01123764412576362225521258999879957588365348835448998996
Q 001801          846 TDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNL  901 (1011)
Q Consensus       846 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  901 (1011)
                      ..+++|+.|++++|.+++..  .++++++|+.|++++|+++. +| .+..+++|+.
T Consensus       147 ~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~  198 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLES  198 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSE
T ss_pred             CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCC
T ss_conf             32111111223455556770--11679989999787997998-81-0127899894

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=1.7e-21  Score=118.15  Aligned_cols=57  Identities=21%  Similarity=0.297  Sum_probs=22.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             7888988978899899987722469999978637898788888432489999989958999
Q 001801          132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN  192 (1011)
Q Consensus       132 ~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n  192 (1011)
                      .+.++++|+++++.+.. + +.++.+++|++|++++|.+++..|  ++++++|++|++++|
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHCCCCEEECCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
T ss_conf             94687899899999977-5-202137886757545655667640--167752231111222

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-23  Score=125.62  Aligned_cols=254  Identities=15%  Similarity=0.137  Sum_probs=0.0

Q ss_pred             CCEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEEE
Q ss_conf             7634544555778888000027777652786114422356790122034586876279734324-995524778565785
Q 001801          601 LESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN-LPPSLGSLGSLTLLH  679 (1011)
Q Consensus       601 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~  679 (1011)
                      ++.++++++.+.......+..   .....+.+...... ..........+|++|++++|.+++. ++..+..+++|+.|+
T Consensus         2 W~~lDLs~~~l~~~~l~~l~~---~~~~~lrl~~~~~~-~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           2 WQTLDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SSEEECTTCBCCHHHHHHHHH---TTCSEEECTTCEEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CCEEECCCCCCCCHHHHHHHH---CCCEEEECCCCCCC-CCHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             677978999788147999874---55427465233345-52244256787887889898457779999997487765145


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCHHHHHCCCCCCEEEECCCCC---CCCCCCCCCCCCCCCEEECCC
Q ss_conf             757825112781221899995998679-8242136735765069983997115425---545881236999886898227
Q 001801          680 LQKNSLSGRIPESLSNCNRLVSLNMDG-NQFSGDIPTWIGEKFSSMVILNLRSNIF---DGQFPTELCFLTSLQILDLGY  755 (1011)
Q Consensus       680 L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~ip~~~~~~l~~L~~L~L~~N~l---~~~~p~~l~~l~~L~~L~Ls~  755 (1011)
                      +++|.++...+..+..+++|++|++++ +.++..--..+.+.+++|++|+++++..   .+.........+.|+.|++++
T Consensus        78 L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          78 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCC
T ss_conf             23467986789998518997571510013412355403657887435652245332333220001000111110122135


Q ss_pred             CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf             3313---3445012255557102489999999866775544679999977886542189841750234212112679974
Q 001801          756 NNLS---GAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDL  832 (1011)
Q Consensus       756 N~l~---g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdL  832 (1011)
                      +...   ..+.....+++.|                                                       +.||+
T Consensus       158 ~~~~i~~~~l~~l~~~~~~L-------------------------------------------------------~~L~L  182 (284)
T d2astb2         158 YRKNLQKSDLSTLVRRCPNL-------------------------------------------------------VHLDL  182 (284)
T ss_dssp             CGGGSCHHHHHHHHHHCTTC-------------------------------------------------------SEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCC-------------------------------------------------------CCCCC
T ss_conf             54244444343423232221-------------------------------------------------------23553


Q ss_pred             CC-CCCEECCCHHCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             47-700002741000112376441257-6362225521258999879957588365348835448998996983367150
Q 001801          833 SK-NNFSGEIPVEVTDLVALRSLNLSY-NHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS  910 (1011)
Q Consensus       833 s~-N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  910 (1011)
                      ++ ..+++.....+.++++|+.|++++ +.+++.....++++++|+.|+++++--.+.++.....++.|..   ..++++
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i---~~~~ls  259 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI---NCSHFT  259 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEE---SCCCSC
T ss_pred             CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC---CCCCCC
T ss_conf             22347783033332135768779899999787378999726999898964488898999999976843661---686587


Q ss_pred             CCCCCC
Q ss_conf             049998
Q 001801          911 GEIPTS  916 (1011)
Q Consensus       911 g~ip~~  916 (1011)
                      ...+..
T Consensus       260 ~~~~~~  265 (284)
T d2astb2         260 TIARPT  265 (284)
T ss_dssp             CTTCSS
T ss_pred             CCCCCC
T ss_conf             777885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.85  E-value=1.4e-21  Score=118.52  Aligned_cols=256  Identities=16%  Similarity=0.100  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCCC---------CCCCCCCCCEEECCC
Q ss_conf             772246999997863789878888----8432489999989958999876779998---------789999986876999
Q 001801          150 IPRFLGSMGKLKYLNLSGAGFKGM----IPHQLGNLSKLQYLDLVENSELYVDNLS---------WLPGLSLLQHLDLGG  216 (1011)
Q Consensus       150 ~p~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~---------~l~~l~~L~~L~L~~  216 (1011)
                      +...+.....|+.|+|++|.+...    +...+...++|+.++++++.........         .+...++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999638997889784983778999999999985899888888777543345421067879998875477756330000


Q ss_pred             CCCCCC--CCHHHHHCCCCCCCEEECCCCCCCCCCCCCC-------------CCCCCCCEEECCCCCCC--CCHHHHHHH
Q ss_conf             789996--4367871299998899757997999999998-------------79998659988999999--970125753
Q 001801          217 VNLGKA--FDWSLAINSLSSLRVLRLSGCQLDHFHPPPI-------------VNISSISVLDLSSNQFD--QNSLVLSWV  279 (1011)
Q Consensus       217 ~~~~~~--~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l-------------~~l~~L~~L~Ls~n~~~--~~~~~~~~l  279 (1011)
                      |.++..  ..+...+...++|++|++++|.+.......+             ...+.|+.+++++|.+.  +...+...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHH
T ss_conf             13455433310111002343210000024666654311112122221100014676421110136501355433221111


Q ss_pred             HCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----CCHHCCCCCCCCEEECCCCCCCCCHHHH
Q ss_conf             0999976999569988656-----740134889999996879989887----4311028999869982388788740068
Q 001801          280 FGLSNLVYLDLGSNDFQGS-----IPVGLQNLTSLRHLDLSYNDFNSS----IPNWLASFSNLVHISLRSNSLQGSITGF  350 (1011)
Q Consensus       280 ~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~  350 (1011)
                      ...+.|++|++++|.++..     +...+..+++|+.|++++|.++..    +...+..+++|++|++++|.+.+.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHH
T ss_conf             23332133543332222222320024332110121122233332222222234443323221111030047567156678


Q ss_pred             HHHHHCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf             87423025478635675768876000178998899815866885135777420135467762642658710224
Q 001801          351 LANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGH  424 (1011)
Q Consensus       351 l~~l~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~  424 (1011)
                      +...-                   .-...+.|++|++++|.+.......+...-....+.|+.+++++|.+...
T Consensus       263 l~~~l-------------------~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         263 VVDAF-------------------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHH-------------------HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHH-------------------HHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf             88776-------------------31568888989898986980899999999970389999897879808986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.1e-18  Score=104.26  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCE
Q ss_conf             03458687627973432499552477856578575782511278122189999599867982421367357650699839
Q 001801          647 NFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVI  726 (1011)
Q Consensus       647 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~  726 (1011)
                      +...+++|+|++|+++ .++..+..+++|+.|++++|.++..  +.+..+++|++|++++|++. .++..++..+++|+.
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred             CCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCHHHHHCCCCCCC-CCCCCCCCCCCCCCC
T ss_conf             8574848978899788-6576200414599898979978764--77445761306431021345-777632233453443


Q ss_pred             EEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCC
Q ss_conf             9711542554588-12369998868982273313
Q 001801          727 LNLRSNIFDGQFP-TELCFLTSLQILDLGYNNLS  759 (1011)
Q Consensus       727 L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  759 (1011)
                      |++++|.+..... ..+..+++|+.+++++|+++
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             4203000166542110013653206640799634

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.70  E-value=6.6e-19  Score=105.42  Aligned_cols=112  Identities=23%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCC
Q ss_conf             01220345868762797343249955247785657857578251127812218999959986798242136735765069
Q 001801          643 DCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFS  722 (1011)
Q Consensus       643 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~  722 (1011)
                      ..+..+++|++|++++|+++ .++ .+..+++|+.|++++|.++ .+|.....+++|+.|++++|+++ .++ .+. .++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~-~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIE-KLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHH-HHH
T ss_pred             HHHHCCCCCCEEECCCCCCC-CCC-CCCCCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCC-CCC-CCC
T ss_conf             67762604615199446899-864-4247825357341353432-10000332212333333332222-222-222-222


Q ss_pred             CCCEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCC
Q ss_conf             98399711542554588-123699988689822733133
Q 001801          723 SMVILNLRSNIFDGQFP-TELCFLTSLQILDLGYNNLSG  760 (1011)
Q Consensus       723 ~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g  760 (1011)
                      +|+.|++++|.++.... ..+..+++|+.|++++|++..
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             CCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf             341112341021255422123677763023427984346

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.3e-16  Score=94.08  Aligned_cols=12  Identities=33%  Similarity=0.420  Sum_probs=3.7

Q ss_pred             CCCCEEECCCCC
Q ss_conf             988689822733
Q 001801          746 TSLQILDLGYNN  757 (1011)
Q Consensus       746 ~~L~~L~Ls~N~  757 (1011)
                      ++|+.+++++|+
T Consensus        90 ~~L~~L~l~~N~  101 (124)
T d1dcea3          90 PRLVLLNLQGNS  101 (124)
T ss_dssp             TTCCEEECTTSG
T ss_pred             CCCCEEECCCCC
T ss_conf             999999897996

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.65  E-value=3e-18  Score=102.18  Aligned_cols=58  Identities=24%  Similarity=0.346  Sum_probs=24.0

Q ss_pred             EEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC
Q ss_conf             99744770000274100011237644125763622255-2125899987995758836534
Q 001801          829 LIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIP-DSIGAMKSIEVIDFSNNQLSEE  888 (1011)
Q Consensus       829 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~~~  888 (1011)
                      .|++++|+++. + ..+..+++|+.|++++|.++.... ..+..+++|+.|++++|.+...
T Consensus        97 ~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          97 ELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             CCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             33333322222-2-22222223411123410212554221236777630234279843467

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.9e-16  Score=90.02  Aligned_cols=84  Identities=20%  Similarity=0.157  Sum_probs=45.2

Q ss_pred             EEEECCCCC-CEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             799744770-0002741000112376441257636222552125899987995758836534883544899899698336
Q 001801          828 ALIDLSKNN-FSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY  906 (1011)
Q Consensus       828 ~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  906 (1011)
                      +.|++++|+ ++...+..|.++++|+.|++++|+++...|..|..+++|+.|+|++|+++...+..+..+ .|+.|++++
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~  112 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSG  112 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCS
T ss_pred             CEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCC-CCCCCCCCC
T ss_conf             7431689866443692122566666721620212477420111245543333226787851574563353-212433579


Q ss_pred             CCCCCC
Q ss_conf             715004
Q 001801          907 NYLSGE  912 (1011)
Q Consensus       907 N~l~g~  912 (1011)
                      |++.+.
T Consensus       113 Np~~C~  118 (156)
T d2ifga3         113 NPLHCS  118 (156)
T ss_dssp             SCCCCC
T ss_pred             CCCCCC
T ss_conf             863388

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.4e-16  Score=91.52  Aligned_cols=66  Identities=24%  Similarity=0.220  Sum_probs=23.1

Q ss_pred             HHCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             220345868762797-343249955247785657857578251127812218999959986798242
Q 001801          645 WMNFLYLRVLNLGNN-NFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS  710 (1011)
Q Consensus       645 ~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  710 (1011)
                      +..+++|++|++++| .++...+..|.++++|+.|++++|+++...+..|..+++|++|+|++|+++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf             2576565743168986644369212256666672162021247742011124554333322678785

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.6e-11  Score=69.17  Aligned_cols=15  Identities=40%  Similarity=0.379  Sum_probs=5.6

Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             345868762797343
Q 001801          648 FLYLRVLNLGNNNFT  662 (1011)
Q Consensus       648 l~~L~~L~Ls~n~l~  662 (1011)
                      +++|++|++++|+++
T Consensus        64 ~~~L~~L~Ls~N~i~   78 (162)
T d1koha1          64 IPELLSLNLSNNRLY   78 (162)
T ss_dssp             CTTCCCCCCCSSCCC
T ss_pred             CCCCCEEECCCCCCC
T ss_conf             878788637776666

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.55  E-value=1.6e-07  Score=49.47  Aligned_cols=113  Identities=8%  Similarity=0.073  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCC-CCCC--CCHHHHHHHHCCCCCCEEECCCCCCC----CCCCCCCCCCCCCCEEECCCCCCCC----C
Q ss_conf             7999865998899-9999--97012575309999769995699886----5674013488999999687998988----7
Q 001801          254 VNISSISVLDLSS-NQFD--QNSLVLSWVFGLSNLVYLDLGSNDFQ----GSIPVGLQNLTSLRHLDLSYNDFNS----S  322 (1011)
Q Consensus       254 ~~l~~L~~L~Ls~-n~~~--~~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~----~  322 (1011)
                      .+.+.|+.|++++ +.+.  +...+...+...+.|++|++++|.+.    ..+...+...+.|++|++++|.++.    .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHCCHHHHHH
T ss_conf             28999819782799998989999999997637764540120156215679887531000234330033010214599999


Q ss_pred             CCHHCCCCCCCCEEECCCCCCCCC-------HHHHHHHHHCCCCEEECCCCC
Q ss_conf             431102899986998238878874-------006887423025478635675
Q 001801          323 IPNWLASFSNLVHISLRSNSLQGS-------ITGFLANLSASIEVLDLSSQQ  367 (1011)
Q Consensus       323 ~~~~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~~L~~L~Ls~n~  367 (1011)
                      +...+...+.|++|++++|.....       +...+...+ +|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~-sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCC
T ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCC-CCCEEECCCCC
T ss_conf             9999984893898778877688865799999999997299-85386486888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.16  E-value=4.2e-07  Score=47.36  Aligned_cols=118  Identities=16%  Similarity=0.131  Sum_probs=0.0

Q ss_pred             HHHHHCCCCCCCEEECCC-CCCCCCCC----CCCCCCCCCCEEECCCCCCC--CCHHHHHHHHCCCCCCEEECCCCCCCC
Q ss_conf             678712999988997579-97999999----99879998659988999999--970125753099997699956998865
Q 001801          225 WSLAINSLSSLRVLRLSG-CQLDHFHP----PPIVNISSISVLDLSSNQFD--QNSLVLSWVFGLSNLVYLDLGSNDFQG  297 (1011)
Q Consensus       225 ~~~~l~~l~~L~~L~Ls~-~~l~~~~~----~~l~~l~~L~~L~Ls~n~~~--~~~~~~~~l~~l~~L~~L~L~~n~l~~  297 (1011)
                      +.....+.+.|++|++++ +.++....    ..+...+.|++|++++|.+.  +...+...+...+.++.+++++|.+..
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
T ss_conf             99999559998688768999989899999998884198257430158961177899999877521221012102543220


Q ss_pred             C----CCCCCCCCCCCCE--EECCCCCCCC----CCCHHCCCCCCCCEEECCCCC
Q ss_conf             6----7401348899999--9687998988----743110289998699823887
Q 001801          298 S----IPVGLQNLTSLRH--LDLSYNDFNS----SIPNWLASFSNLVHISLRSNS  342 (1011)
Q Consensus       298 ~----~~~~l~~l~~L~~--L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~  342 (1011)
                      .    +...+...+.|+.  |++++|.+..    .+...+...+.|+.|++..+.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             1478899999848652477321677867679999999999849984788581898