Citrus Sinensis ID: 001817

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------101

MPFSFIFIRSGTTMTMALRPTSLNFYRAPKALLKPSPLSLLVVKNQAVAFRLLHHYHYHLPFHLSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYGRYAYQDESSDDSDREFGSTQQQMCGSTLDNIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKAPLPNYRSDLDEKRPQREVILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGSTTNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGGLVSCLIP

cccEEEEEEcccEEEEEEccccccccccccccccccccHHHHHHHcHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHcHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHccccccccEEEEEcccccccccEEEEEccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHcccccEEEEcccccccEEEEHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHccccccccEEEEEEEcccccccccccEEEEEEccccccEEEcccccccccccccccHHHHHHHcccccccccccEEEcccHHHHHHccccccccEEEccHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHHHHccccccccccccHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccEEEEccccccEEEEcccccEEEcccccccccccccccEEEEEEEHHccccEEcccccccHHHHHHcccccccccccccccc

ccEEEEEEEccccHHEEEccccccccccccHcccccccEHHHEHHHHHHHHHHHHHccccccccEEEEEEEEEEcccccccccccccccccHHHHHHHHHccHHHHHHccccHcccccccHHHHHHHHHHHcccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccccccHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHccccccccccEEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccEEEEcccHHHHHHHHccccccccEEEEEEcHHHccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHccccEEEEccccccEEEEEcccHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHcccccccEEEEEEEcccEEEEEcccEEEEEccccEEEccccccccccccEEcHHHHHHHHHHccccccccccEEEEEccHHHHHHHHcccccHHHcccHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHcHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcHccccEEEcccccEEEEEEEcccEEEEccccHccccccccccEEEEEEEEEccHHHHHHccccccHHHHHHccHHccccccccccc

MPFSFIFIrsgttmtmalrptslnfyrapkallkpsplsllVVKNQAVAFRLLHHYhyhlpfhlsrRRHAVvtcsgavtrtrrldwkavsyplleqqtsnygryayqdessddsdrefgstqqqmcgstldNIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYAKVVVFskaplpnyrsdldekrpqrevilpfglLREVDAHLKAYLSQKYINASMSSlsnvgsttndegLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAwqespegqkmLEFRRSLPSYKERDALLKAISENQVVVVSgetgcgkttqlpqYILESETEAARGAACSIictqprriSAMAVSERVAAERGEKLGESVGYKVRlegmkgrdtrlMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFssyfggapmlhipgftypVRAYFLENILEMTRYRLNTYnqiddygqeKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQqslscwnpdsigfNLIEHVLCHivkkerpgAVLVFMTGWDDINSLKDqlqahpllgdpsRVLLLACHgsmasseqrlifdkpedgVRKIVLATNmaetsitiNDVVFVIDCGKaketsydalnntpcllpsWISKAAARQRrgragrvqpgecyhlypryvydafadyqlpellrtPLQSLCLQIKSLQLGSISEFLsralqppeplsvKNAIEYLQIIGaldenenltvlgrnlsmlpvepklGKMLILGAIFNCLDPVMTVVAglsvrdpflmpfdkkDLAESAKAQFSARDYSDHLALVRAYDgwkdaerhqsgYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDaglvdrntencnkwshdeHLIRAVICAglfpglcsVVNKEKSIALKTMEDGQVLLYsnsvnagvpkipypwlvfnekikvnsvflrdstgvsdsVLLLFGgnisrgglvsclip

MPFSFIFirsgttmtmalrPTSLNFYRAPKALLKPSPLSLLVVKNQAVAFRLLHHYHYHLpfhlsrrrhAVVTCSgavtrtrrldwkavsyplleqqtsnygRYAYQDESSDDSDREFGSTQQQMCGSTLDNIDEWRWKLTMllrnkdeqevvsrakkdrrdFEQLSALAtrmglhsrqyAKVVVFSKAPlpnyrsdldekrpqREVILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGSTTNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKqqawqespegqkmLEFRRSLPSYKERDALLKAISENQVVVVSgetgcgkttQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAaergeklgesvgykvrlegmkgrdtrlMFCTTGILLrrllvdrslrGVTHVIvdeihergmneDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASseqrlifdkpedGVRKIVLAtnmaetsitindVVFVIDCGKAKETSYDAlnntpcllpsWISKAAARQRrgragrvqpgecyHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAqfsardysdHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLfggnisrgglvsclip

MPFSFIFIRSGTTMTMALRPTSLNFYRapkallkpsplsllvvkNQAVAFRllhhyhyhlpfhlSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYGRYAYQDESSDDSDREFGSTQQQMCGSTLDNIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKAPLPNYRSDLDEKRPQREVILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGSTTNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGIllrrllvdrslrGVTHVIVDEIHERGMNEDFLLIVlkellprrpelrlilMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKaaarqrrgragrVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGGLVSCLIP

***SFIFIRSGTTMTMALRPTSLNFYRAPKALLKPSPLSLLVVKNQAVAFRLLHHYHYHLPFHLSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYGRYA********************CGSTLDNIDEWRWKLTMLLR**********************ALATRMGLHSRQYAKVVVFSKAPLP************REVILPFGLLREVDAHLKAYLSQKYINA************************************************************************ALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERV*******LGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWK*********************ALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAE*AKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGGLVSCLI*

*PFSFIFIRSGTTMTMALRP************LKPSPLSLLVVKNQ***************************************************************************************DEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKAPLPNYRSDLDEKRP*******FGLLREVDAH*************************************************************************RRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNT*****************************ASAVED*********************NPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLM**************FSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTEN*NKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGGLVSCLI*

MPFSFIFIRSGTTMTMALRPTSLNFYRAPKALLKPSPLSLLVVKNQAVAFRLLHHYHYHLPFHLSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYGRYA********************CGSTLDNIDEWRWKLTMLLRNK*************RDFEQLSALATRMGLHSRQYAKVVVFSKAPLPNYRSDLDEKRPQREVILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGSTTNDEGLYEQQEQLVQNSVVRERILRQRS**************EGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQK*************SAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKA***********VQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGGLVSCLIP

MPFSFIFIRSGTTMTMALRPTSLNFYRAPKALLKPSPLSLLVVKNQAVAFRLLHHYHYHLPFHLSRRRHAVVTCSGAVTRTRRLDWKAVSYPLLEQQTSNYG**AYQDE**********STQ****GSTLDNIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKAPLPNYRSDLDEKRPQREVILPFGLLREVDAHLKAYLSQKYI**********************QEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGVSDSVLLLFGGNISRGGLVSCLI*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1009	2.2.26 [Sep-21-2011]
Q8VHK9		1001	Probable ATP-dependent RN	yes	no	0.715	0.721	0.447	1e-180
Q9H2U1		1008	Probable ATP-dependent RN	yes	no	0.700	0.701	0.454	1e-177
Q6P158		1386	Putative ATP-dependent RN	no	no	0.713	0.519	0.406	1e-161
Q6P5D3		1388	Putative ATP-dependent RN	no	no	0.719	0.523	0.408	1e-160
Q7Z478		1369	ATP-dependent RNA helicas	no	no	0.702	0.517	0.400	1e-146
Q6PGC1		1365	ATP-dependent RNA helicas	no	no	0.706	0.522	0.402	1e-146
A3KMI0		1362	ATP-dependent RNA helicas	N/A	no	0.699	0.518	0.393	1e-144
Q7L2E3		1194	Putative ATP-dependent RN	no	no	0.653	0.551	0.404	1e-141
Q5R607		1194	Putative ATP-dependent RN	no	no	0.653	0.551	0.404	1e-141
Q5BJS0		1194	Putative ATP-dependent RN	no	no	0.652	0.551	0.404	1e-141

>sp\|Q8VHK9\|DHX36_MOUSE Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=2	Back alignment and function desciption

 Score =  632 bits (1631), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 334/747 (44%), Positives = 474/747 (63%), Gaps = 25/747 (3%)

Query: 271 SLQMH--EKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTT 328
           SL  H  E  Q  +  P   +M  FR+ LPSY  +  L+  I+ +QV V+SGETGCGKTT
Sbjct: 172 SLDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELVNLINNHQVTVISGETGCGKTT 231

Query: 329 QLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGE--SVGYKVRLEG 386
           Q+ Q+IL++  E  +G+AC I+CTQPRRISA++V+ERVA ER E  G   S GY++RL+ 
Sbjct: 232 QVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNGNSTGYQIRLQS 291

Query: 387 -MKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP 445
            +  +   +++CTTGI+L+ L  D  L  V+H+++DEIHER +  D L+ V+K+LL  R 
Sbjct: 292 RLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFRS 351

Query: 446 ELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDY 505
           +L++ILMSATLNAE FS YFG  PM+HIPGFT+PV  Y LE+I+E  RY     +Q +  
Sbjct: 352 DLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRY---VPDQKEHR 408

Query: 506 GQEKSWKMQKQALALRKRKSSIASAVEDALEAADFRE----YSVQTQQSLSCWNPDSIGF 561
            Q K   MQ     + +++     A+      A  +E    YS  T   L   + D +  
Sbjct: 409 SQFKRGFMQGH---VNRQEKEEKEAIYKERWPAYIKELRTRYSASTVDVLQMMDDDKVDL 465

Query: 562 NLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASS 621
           NLI  ++ +IV +E  GA+LVF+ GWD+I++L D L +  +     + L++  H  M + 
Sbjct: 466 NLIAALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKS-DKFLIIPLHSLMPTV 524

Query: 622 EQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWI 681
            Q  +F K   GVRKIV+ATN+AETSITI+DVV+VID GK KET +D  NN   +   W+
Sbjct: 525 NQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWV 584

Query: 682 SKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSI 741
           SKA A+QR+GRAGRVQPG CYHLY         DYQLPE+LRTPL+ LCLQIK L+LG I
Sbjct: 585 SKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGI 644

Query: 742 SEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAI 801
           + FLSR + PP   +V  +I++L  + ALD+ E LT LG +L+ LPVEP +GKM++ GA+
Sbjct: 645 AYFLSRLMDPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGAL 704

Query: 802 FNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAER 861
           F CLDPV+T+ A LS +DPF++P  K+ +A++ + + +    SDHL +V A++GW++A+R
Sbjct: 705 FCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEAKR 764

Query: 862 HQSGYE--YCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNT---ENCNKWSHDEHLI 916
               YE  YCW+ FLS+ TL+ + +++ QF   L  AG V   +      N  S +E +I
Sbjct: 765 RGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRSPKDPKANINSDNEKII 824

Query: 917 RAVICAGLFPGLCSVV----NKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEK 972
           +AVICAGL+P +  +      K K + + T  DG V ++  SVN       Y WL+++ K
Sbjct: 825 KAVICAGLYPKVAKIRLNLGKKRKMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLK 884

Query: 973 IKVNSVFLRDSTGVSDSVLLLFGGNIS 999
           ++ +S++L D T VS   LL FGG+IS
Sbjct: 885 MRTSSIYLYDCTEVSPYCLLFFGGDIS 911

Plays a role in degradation and deadenylation of mRNAs containing in their 3'-UTR the consensus ARE sequence element. May function in sex development and spermatogenesis.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp\|Q9H2U1\|DHX36_HUMAN Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2	Back alignment and function description

>sp\|Q6P158\|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2	Back alignment and function description

>sp\|Q6P5D3\|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2	Back alignment and function description

>sp\|Q7Z478\|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2	Back alignment and function description

>sp\|Q6PGC1\|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1	Back alignment and function description

>sp\|A3KMI0\|DHX29_XENLA ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1	Back alignment and function description

>sp\|Q7L2E3\|DHX30_HUMAN Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30 PE=1 SV=1	Back alignment and function description

>sp\|Q5R607\|DHX30_PONAB Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30 PE=2 SV=1	Back alignment and function description

>sp\|Q5BJS0\|DHX30_RAT Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1009
359491476		1178	PREDICTED: probable ATP-dependent RNA he	0.960	0.822	0.814	0.0
449497595		1231	PREDICTED: probable ATP-dependent RNA he	0.983	0.805	0.759	0.0
449439551		1168	PREDICTED: probable ATP-dependent RNA he	0.907	0.784	0.818	0.0
356527870		1177	PREDICTED: probable ATP-dependent RNA he	0.963	0.825	0.766	0.0
356511271		1180	PREDICTED: probable ATP-dependent RNA he	0.934	0.799	0.798	0.0
297852484		1197	helicase domain-containing protein [Arab	0.967	0.815	0.762	0.0
357521527		1214	ATP-dependent RNA helicase A-like protei	0.908	0.755	0.767	0.0
255558801		1058	ATP-dependent RNA helicase, putative [Ri	0.874	0.833	0.829	0.0
238478799		1206	DEA(D/H)-box RNA helicase family protein	0.967	0.809	0.759	0.0
297734269		1057	unnamed protein product [Vitis vinifera]	0.852	0.813	0.865	0.0

>gi\|359491476\|ref\|XP_002277625.2\| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1604 bits (4154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 803/986 (81%), Positives = 869/986 (88%), Gaps = 17/986 (1%)

Query: 33   LKPSPLSLLV--VKNQAVAFR--LLHHYHYHLPFHLSRRRHAVVTCS---GAVTRTRRLD 85
            LKP PL   +         FR  L      H+    S    +VV CS   GA  R+  LD
Sbjct: 3    LKPVPLQFHIRPYHKTPKMFRPLLFTPMRAHVSAGGSLYLRSVVACSASSGACARSLELD 62

Query: 86   WKA--VSYPLLEQQTSNYGRYAYQDESSDDSDREFGSTQQQ-MCGSTLDNIDEWRWKLTM 142
            W+   V+ P L  Q S YGR+AY D S  DSDRE  S QQQ M  ST +NIDEW+WKLTM
Sbjct: 63   WRQRNVALPYLFHQNSRYGRFAYDDFSEYDSDREVESAQQQQMRASTHENIDEWKWKLTM 122

Query: 143  LLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKAPLPNYRSDLDEKR 202
            L+RNKDEQEVVS  KKDRRDFEQ+SALATRMGL+S QY++VVVFSK PLPNYRSDLD+KR
Sbjct: 123  LIRNKDEQEVVSTEKKDRRDFEQISALATRMGLYSCQYSRVVVFSKVPLPNYRSDLDDKR 182

Query: 203  PQREVILPFGLLREVDAHLKAYLSQKYINA---SMSSLS-NVG-STTNDEGLYEQQEQLV 257
            PQREV+LPFGL REV AHLK YLSQK ++    S  +LS ++G S+  +EG YEQQE L 
Sbjct: 183  PQREVVLPFGLQREVHAHLKEYLSQKSMSRESFSDKTLSRSIGNSSVTEEGFYEQQEPLT 242

Query: 258  QNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVV 317
            Q SVV ERIL+++SLQ+  +QQ WQES EGQKM EFRRSLP+YKER+ALL AIS+NQVVV
Sbjct: 243  QTSVVMERILKRKSLQIRNQQQDWQESSEGQKMQEFRRSLPAYKEREALLNAISQNQVVV 302

Query: 318  VSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGES 377
            VSGETGCGKTTQLPQYILESE EAARGA CSIICTQPRRISAM+VSERVAAERGEKLGES
Sbjct: 303  VSGETGCGKTTQLPQYILESEIEAARGAFCSIICTQPRRISAMSVSERVAAERGEKLGES 362

Query: 378  VGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVL 437
            VGYKVRLEGMKGRDTRL+FCTTGILLRRLLVDR+L+GVTHVIVDEIHERGMNEDFLLIVL
Sbjct: 363  VGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVL 422

Query: 438  KELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLN 497
            K+LLPRRPELRLILMSATLNAELFSSYFGGAP +HIPGFTYPVR +FLENILEMT YRL 
Sbjct: 423  KDLLPRRPELRLILMSATLNAELFSSYFGGAPSIHIPGFTYPVRTHFLENILEMTGYRLT 482

Query: 498  TYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPD 557
             YNQIDDYGQEK WKMQKQAL  RKRKS IAS+VEDALE A+F  YS +TQ SLSCWNPD
Sbjct: 483  PYNQIDDYGQEKVWKMQKQAL--RKRKSQIASSVEDALEVANFDAYSPRTQDSLSCWNPD 540

Query: 558  SIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGS 617
            SIGFNLIEH LCHIVKKERPGAVLVFMTGWDDINSLKDQL+AHPLLGDPSRVLLLACHGS
Sbjct: 541  SIGFNLIEHALCHIVKKERPGAVLVFMTGWDDINSLKDQLEAHPLLGDPSRVLLLACHGS 600

Query: 618  MASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLL 677
            MASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFV+DCGKAKETSYDALNNTPCLL
Sbjct: 601  MASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLL 660

Query: 678  PSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQ 737
            PSWISKA+ARQRRGRAGRVQPGECYHLYP+ VYDAF+DYQLPELLRTPLQSLCLQIKSLQ
Sbjct: 661  PSWISKASARQRRGRAGRVQPGECYHLYPKCVYDAFSDYQLPELLRTPLQSLCLQIKSLQ 720

Query: 738  LGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLI 797
            LGSISEFL+RALQPPEPLSV+NAIEYL+ IGALDENENLTVLGRNLSMLPVEPKLGKMLI
Sbjct: 721  LGSISEFLARALQPPEPLSVQNAIEYLKTIGALDENENLTVLGRNLSMLPVEPKLGKMLI 780

Query: 798  LGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWK 857
             G++FNCL+P+MTVVAGLSVRDPFLMPFDKKDLAESAKA FS R +SDHLALV+AY+GWK
Sbjct: 781  FGSLFNCLNPIMTVVAGLSVRDPFLMPFDKKDLAESAKALFSGRTFSDHLALVQAYEGWK 840

Query: 858  DAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDEHLIR 917
            +AER QSGYEYCW+NFLSAQTLKAIDSLR+QF +LLKDAGLV+ NTE CNKWSHDEHLIR
Sbjct: 841  EAERQQSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVENNTEACNKWSHDEHLIR 900

Query: 918  AVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNS 977
            AVICAGLFPG+CSVVNKEKSI+LKTMEDGQVLLYSNSVNA  PKIPYPWLVFNEK+KVNS
Sbjct: 901  AVICAGLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPKIPYPWLVFNEKVKVNS 960

Query: 978  VFLRDSTGVSDSVLLLFGGNISRGGL 1003
            VFLRDST VSDS+LLLFGG ISRGG+
Sbjct: 961  VFLRDSTAVSDSMLLLFGGRISRGGI 986

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449497595\|ref\|XP_004160445.1\| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449439551\|ref\|XP_004137549.1\| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356527870\|ref\|XP_003532529.1\| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max]	Back alignment and taxonomy information

>gi\|356511271\|ref\|XP_003524350.1\| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max]	Back alignment and taxonomy information

>gi\|297852484\|ref\|XP_002894123.1\| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297339965\|gb\|EFH70382.1\| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357521527\|ref\|XP_003631052.1\| ATP-dependent RNA helicase A-like protein [Medicago truncatula] gi\|355525074\|gb\|AET05528.1\| ATP-dependent RNA helicase A-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255558801\|ref\|XP_002520424.1\| ATP-dependent RNA helicase, putative [Ricinus communis] gi\|223540409\|gb\|EEF41979.1\| ATP-dependent RNA helicase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|238478799\|ref\|NP_001154411.1\| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] gi\|332194213\|gb\|AEE32334.1\| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297734269\|emb\|CBI15516.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1009
TAIR\|locus:2008144		1206	AT1G48650 [Arabidopsis thalian	0.915	0.766	0.757	0.0
TAIR\|locus:2038796		1113	AT2G01130 [Arabidopsis thalian	0.877	0.795	0.658	2.10000000027e-315
TAIR\|locus:504954904		1161	ABO6 "ABA overly sensitive 6"	0.880	0.764	0.639	1.50000000019e-314
TAIR\|locus:2039280		995	AT2G35920 [Arabidopsis thalian	0.858	0.870	0.456	8.3e-209
UNIPROTKB\|F6V8H1		1122	DHX36 "Uncharacterized protein	0.769	0.691	0.410	1.8e-151
MGI\|MGI:1919412		1001	Dhx36 "DEAH (Asp-Glu-Ala-His)	0.718	0.724	0.423	2.3e-151
RGD\|1308767		1000	Dhx36 "DEAH (Asp-Glu-Ala-His)	0.716	0.723	0.428	4.7e-151
UNIPROTKB\|Q9H2U1		1008	DHX36 "Probable ATP-dependent	0.699	0.700	0.428	3e-149
UNIPROTKB\|Q05B79		1010	DHX36 "Uncharacterized protein	0.739	0.738	0.410	1.6e-148
UNIPROTKB\|E1C550		985	DHX36 "Uncharacterized protein	0.715	0.732	0.418	7.1e-148

TAIR\|locus:2008144 AT1G48650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3654 (1291.3 bits), Expect = 0., P = 0.
 Identities = 704/929 (75%), Positives = 798/929 (85%)

Query:    77 AVTRTRRLDWKAVSYPLLEQQTSNYGRYAYQD-ESSDDSDREFGSTQ-QQMCGSTLDNID 134
             A + T  ++W+A + P  ++Q S YGR AY D ESSD+SDR+ GS+Q QQM GSTLDNID
Sbjct:    76 ASSSTLGIEWRAANLPYFQRQNSGYGRIAYNDYESSDESDRDVGSSQSQQMAGSTLDNID 135

Query:   135 EWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKAPLPNY 194
             +WR+KLTMLLRNK++QEVVSR +KDRRDF+ +SALATRMGLHSRQY+K+VV SKAPLPNY
Sbjct:   136 QWRFKLTMLLRNKEDQEVVSRERKDRRDFDHISALATRMGLHSRQYSKIVVISKAPLPNY 195

Query:   195 RSDLDEKRPQREVILPFGLLREVDAHLKAYLSQKY-INASMSSLSNVGSTTNDEGLYEQQ 253
             R DLD+KRPQREV+LPFGL  EVDAHL ++L QK  +   M   ++  S  N  G YE  
Sbjct:   196 RPDLDDKRPQREVVLPFGLQSEVDAHLHSFLDQKKTLIPEMPRQNSSESLANGYGNYETP 255

Query:   254 EQLVQNSVVRERILRQRSLQMHEKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISEN 313
             E ++QNS+ RERILR RSLQ+  KQQ W +SPEGQKM+ FR++LP+YKE+DALLKAI+ N
Sbjct:   256 ETVMQNSLARERILRPRSLQLKSKQQQWVDSPEGQKMVGFRKTLPAYKEKDALLKAIAAN 315

Query:   314 QVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEK 373
             QVVVVSGETGCGKTTQLPQYILESE EAARGA CSIICTQPRRISA++VSERVAAERGE+
Sbjct:   316 QVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEQ 375

Query:   374 LGESVGYKVRLEGMKGRDTRLMFCTTGIXXXXXXXXXXXXGVTHVIVDEIHERGMNEDFL 433
             +GESVGYKVRLEGM+GRDTRL+FCTTG+            GVTHV+VDEIHERGMNEDFL
Sbjct:   376 IGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVVVDEIHERGMNEDFL 435

Query:   434 LIVXXXXXXXXXXXXXXXMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTR 493
             LIV               MSATLNAELFSSYFGGAP +HIPGFTYPVRA+FLE+ LE + 
Sbjct:   436 LIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTYPVRAHFLEDYLETSG 495

Query:   494 YRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSC 553
             YRL TYNQIDDYG+EK+WKMQKQA   +KRKS I+SAVEDALEAADF+ Y+ +T+ SLSC
Sbjct:   496 YRLTTYNQIDDYGEEKTWKMQKQA-QFKKRKSLISSAVEDALEAADFKGYNFRTRDSLSC 554

Query:   554 WNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLA 613
             W+PDSIGFNLIE+VLCHIVK ERPGAVLVFMTGWDDINSLK+QL+AH LLGDP++VLLLA
Sbjct:   555 WSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKNQLEAHSLLGDPNKVLLLA 614

Query:   614 CHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNT 673
             CHGSMASSEQRLIFD+P +G+RKIVLATNMAETSITINDVV+VIDCGKAKETSYDALNNT
Sbjct:   615 CHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNT 674

Query:   674 PCLLPSWISKXXXXXXXXXXXXVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQI 733
             PCLLPSWISK            V PGECYHLYPR VY+AFADYQ PELLRTPLQSLCLQI
Sbjct:   675 PCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQI 734

Query:   734 KSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLG 793
             KSL LGSISEFLSRALQPPE LSV+NA+EYL+IIGALD++ENLT LG+NLSMLPVEPKLG
Sbjct:   735 KSLGLGSISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLG 794

Query:   794 KMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAY 853
             KMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAE+A+++FS RDYSDHL LVRAY
Sbjct:   795 KMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAY 854

Query:   854 DGWKDAERHQSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWSHDE 913
             +GWKDAER  SGY+YCWKNFLS+QTLKA+DS+RKQF  LLK+A L+D N E C+K SHDE
Sbjct:   855 NGWKDAERTHSGYDYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLID-NIEGCSKLSHDE 913

Query:   914 HLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKI 973
             HL+RA+ICAG+FPG+CSVVNKEKSI LKTMEDGQVLLYS+SVN  VP IP+PWLVFN+K+
Sbjct:   914 HLVRAIICAGMFPGVCSVVNKEKSITLKTMEDGQVLLYSSSVNGNVPMIPFPWLVFNDKV 973

Query:   974 KVNSVFLRDSTGVSDSVLLLFGGNISRGG 1002
             KVNSVFLRDST VSDSVLLLFG  IS GG
Sbjct:   974 KVNSVFLRDSTAVSDSVLLLFGDKISSGG 1002

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

TAIR\|locus:2038796 AT2G01130 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504954904 ABO6 "ABA overly sensitive 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039280 AT2G35920 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F6V8H1 DHX36 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1919412 Dhx36 "DEAH (Asp-Glu-Ala-His) box polypeptide 36" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1308767 Dhx36 "DEAH (Asp-Glu-Ala-His) box polypeptide 36" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9H2U1 DHX36 "Probable ATP-dependent RNA helicase DHX36" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q05B79 DHX36 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C550 DHX36 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1009
COG1643		845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	1e-169
TIGR01967		1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	1e-108
PRK11131		1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	1e-100
PRK11664		812	PRK11664, PRK11664, ATP-dependent RNA helicase Hrp	1e-60
TIGR01970		819	TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H	5e-37
pfam04408		91	pfam04408, HA2, Helicase associated domain (HA2)	1e-33
TIGR01970		819	TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H	5e-32
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	8e-26
pfam07717		109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	3e-25
smart00847		82	smart00847, HA2, Helicase associated domain (HA2)	2e-23
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-23
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	6e-12
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	1e-11
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	2e-10
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	3e-08
PHA02653		675	PHA02653, PHA02653, RNA helicase NPH-II; Provision	6e-06
PHA02653		675	PHA02653, PHA02653, RNA helicase NPH-II; Provision	2e-04
COG1111		542	COG1111, MPH1, ERCC4-like helicases [DNA replicati	0.001

>gnl\|CDD\|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  515 bits (1329), Expect = e-169
 Identities = 252/743 (33%), Positives = 357/743 (48%), Gaps = 118/743 (15%)

Query: 276 EKQQAWQESPEGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYIL 335
               A   S     +LE+R  LP    RD +LKAI +NQVV++ GETG GKTTQLPQ++L
Sbjct: 28  SGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLL 87

Query: 336 ESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLM 395
           E       G A  I CTQPRR++A +V+ERVA E GEKLGE+VGY +R E      TR+ 
Sbjct: 88  E----EGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIK 143

Query: 396 FCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLP-RRPELRLILMSA 454
             T GILLR +  D  L G + VI+DE HER +N D LL +LK+LL  RR +L+LI+MSA
Sbjct: 144 VMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203

Query: 455 TLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNT-YNQIDDYGQEKSWKM 513
           TL+AE FS+YFG AP++ I G     R Y +E      RY      + I           
Sbjct: 204 TLDAERFSAYFGNAPVIEIEG-----RTYPVE-----IRYLPEAEADYI----------- 242

Query: 514 QKQALALRKRKSSIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVK 573
                            + DA+ AA                                I  
Sbjct: 243 -----------------LLDAIVAA------------------------------VDIHL 255

Query: 574 KERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDG 633
           +E  G++LVF+ G  +I    + L+   L GD   +L L  +G++++ EQ  +F+    G
Sbjct: 256 REGSGSILVFLPGQREIERTAEWLEKAEL-GDDLEILPL--YGALSAEEQVRVFEPAPGG 312

Query: 634 VRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRA 693
            RK+VLATN+AETS+TI  + +VID G AKE  YD       L    ISKA+A QR GRA
Sbjct: 313 KRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRA 372

Query: 694 GRVQPGECYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGS-ISEFLSRALQPP 752
           GR  PG CY LY    + AF ++ LPE+LRT L  L LQ+KSL +G  I+ F    L PP
Sbjct: 373 GRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPP 430

Query: 753 EPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVV 812
              +++ A+  LQ +GALD++  LT LG+ +S+LP++P+L +ML+      CL    T+ 
Sbjct: 431 PEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIA 490

Query: 813 AGLSVRD---PFLMPFDKK------DLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQ 863
           + LS +D    F      +      DL +  K + +A    DHL L+ A+      +R +
Sbjct: 491 SMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAK 550

Query: 864 SGY---EYCWKNFLSAQTLKAIDSLRKQ------------FLFLLKD-----AGLVDRNT 903
             Y     C       + L     +                     D     A  +  + 
Sbjct: 551 GEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHC 610

Query: 904 ENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIALKTMEDGQ-VLLYSNSVNAGVPKI 962
            +   W      IR  + AG    +  +    +     T+ D   V  + +SV  G   +
Sbjct: 611 YSEPIWD----DIRGALAAGRKLNIAQLQLDGR--PYVTLSDNTPVFAHPSSVRLG--LV 662

Query: 963 PYPWLVFNEKIKVNSVFLRDSTG 985
              W+ + E ++    +LR+  G
Sbjct: 663 LLEWIKYAEFLRTRKGYLREGRG 685

Length = 845

>gnl\|CDD\|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA	Back alignment and domain information

>gnl\|CDD\|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>gnl\|CDD\|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>gnl\|CDD\|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB	Back alignment and domain information

>gnl\|CDD\|218070 pfam04408, HA2, Helicase associated domain (HA2)	Back alignment and domain information

>gnl\|CDD\|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold	Back alignment and domain information

>gnl\|CDD\|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional	Back alignment and domain information

>gnl\|CDD\|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional	Back alignment and domain information

>gnl\|CDD\|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1009
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	100.0
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	100.0
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	100.0
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	100.0
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	100.0
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	100.0
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	100.0
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	100.0
PHA02653		675	RNA helicase NPH-II; Provisional	100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PTZ00110		545	helicase; Provisional	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
COG1204		766	Superfamily II helicase [General function predicti	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
PTZ00424		401	helicase 45; Provisional	100.0
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	100.0
COG1202		830	Superfamily II helicase, archaea-specific [General	100.0
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	100.0
KOG0343		758	consensus RNA Helicase [RNA processing and modific	100.0
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	100.0
PRK13767		876	ATP-dependent helicase; Provisional	100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	100.0
COG1201		814	Lhr Lhr-like helicases [General function predictio	100.0
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	99.98
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.98
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.98
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.98
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.98
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.98
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.97
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.97
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.97
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.97
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.97
PRK10689		1147	transcription-repair coupling factor; Provisional	99.97
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.97
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.97
KOG0354		746	consensus DEAD-box like helicase [General function	99.97
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.97
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.97
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.96
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.96
KOG0327		397	consensus Translation initiation factor 4F, helica	99.96
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.96
KOG4284		980	consensus DEAD box protein [Transcription]	99.96
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.96
PRK13766		773	Hef nuclease; Provisional	99.95
PHA02558		501	uvsW UvsW helicase; Provisional	99.95
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.95
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.95
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.95
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	99.94
COG1205		851	Distinct helicase family with a unique C-terminal	99.94
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	99.94
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.94
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	99.94
PRK09401		1176	reverse gyrase; Reviewed	99.93
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.93
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.92
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.92
PRK14701		1638	reverse gyrase; Provisional	99.92
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.91
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.9
PRK05580		679	primosome assembly protein PriA; Validated	99.9
PRK09694		878	helicase Cas3; Provisional	99.89
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.89
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.89
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.89
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.89
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.89
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.88
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.88
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.88
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.88
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.88
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	99.88
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.87
PRK04914		956	ATP-dependent helicase HepA; Validated	99.83
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.82
PF07717		114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	99.79
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.79
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.79
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.76
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.75
COG4096		875	HsdR Type I site-specific restriction-modification	99.75
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.71
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.7
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.7
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.69
PF04408		102	HA2: Helicase associated domain (HA2); InterPro: I	99.69
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.68
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.62
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.6
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.59
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	99.56
smart00847		92	HA2 Helicase associated domain (HA2) Add an annota	99.56
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.54
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.53
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.51
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.44
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.43
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	99.42
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.4
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.37
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	99.37
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.35
KOG1123		776	consensus RNA polymerase II transcription initiati	99.32
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	99.31
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.3
PRK05298		652	excinuclease ABC subunit B; Provisional	99.3
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.27
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.27
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	99.23
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.22
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.21
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.18
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.13
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.1
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.09
CHL00122		870	secA preprotein translocase subunit SecA; Validate	99.04
KOG0387		923	consensus Transcription-coupled repair protein CSB	98.99
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.97
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	98.92
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	98.9
PRK14873		665	primosome assembly protein PriA; Provisional	98.88
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	98.81
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.8
COG4889		1518	Predicted helicase [General function prediction on	98.78
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	98.67
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.66
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.62
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.61
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	98.42
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	98.28
COG0610		962	Type I site-specific restriction-modification syst	98.23
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	98.23
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	98.21
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	98.02
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	97.97
PF13245		76	AAA_19: Part of AAA domain	97.93
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.88
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.84
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	97.79
KOG1002		791	consensus Nucleotide excision repair protein RAD16	97.65
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.64
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.61
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	97.57
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	97.56
KOG1803		649	consensus DNA helicase [Replication, recombination	97.55
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.49
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	97.48
PRK10536		262	hypothetical protein; Provisional	97.45
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	97.45
COG1419		407	FlhF Flagellar GTP-binding protein [Cell motility	97.39
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	97.37
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	97.33
PRK10875		615	recD exonuclease V subunit alpha; Provisional	97.27
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	97.24
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	97.22
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	97.21
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	97.2
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.13
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.13
PRK15483		986	type III restriction-modification system StyLTI en	97.12
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	97.06
PRK06526		254	transposase; Provisional	97.03
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	96.99
PRK12726		407	flagellar biosynthesis regulator FlhF; Provisional	96.91
PRK12727		559	flagellar biosynthesis regulator FlhF; Provisional	96.91
PRK12724		432	flagellar biosynthesis regulator FlhF; Provisional	96.88
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	96.88
PF05729		166	NACHT: NACHT domain	96.87
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	96.83
PF05970		364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.71
PRK14974		336	cell division protein FtsY; Provisional	96.69
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.68
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	96.64
PRK08181		269	transposase; Validated	96.62
PRK04296		190	thymidine kinase; Provisional	96.61
PRK13889		988	conjugal transfer relaxase TraA; Provisional	96.6
PHA03333		752	putative ATPase subunit of terminase; Provisional	96.5
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	96.46
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	96.38
KOG4439		901	consensus RNA polymerase II transcription terminat	96.36
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	96.3
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	96.22
KOG2340		698	consensus Uncharacterized conserved protein [Funct	96.19
PRK14723		767	flhF flagellar biosynthesis regulator FlhF; Provis	96.18
PRK14721		420	flhF flagellar biosynthesis regulator FlhF; Provis	96.15
PF05127		177	Helicase_RecD: Helicase; InterPro: IPR007807 This	96.14
PRK09183		259	transposase/IS protein; Provisional	96.13
smart00382		148	AAA ATPases associated with a variety of cellular	96.12
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	96.07
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	96.02
TIGR00376		637	DNA helicase, putative. The gene product may repre	96.02
PRK06731		270	flhF flagellar biosynthesis regulator FlhF; Valida	95.94
PRK06995		484	flhF flagellar biosynthesis regulator FlhF; Valida	95.91
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	95.9
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.87
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.77
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	95.73
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	95.73
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	95.73
PRK08727		233	hypothetical protein; Validated	95.72
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	95.72
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	95.72
PRK10416		318	signal recognition particle-docking protein FtsY;	95.71
PRK09112		351	DNA polymerase III subunit delta'; Validated	95.69
PF13173		128	AAA_14: AAA domain	95.66
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	95.65
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.64
TIGR03499		282	FlhF flagellar biosynthetic protein FlhF.	95.62
PRK06835		329	DNA replication protein DnaC; Validated	95.62
PRK07952		244	DNA replication protein DnaC; Validated	95.61
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	95.61
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	95.53
PRK00771		437	signal recognition particle protein Srp54; Provisi	95.49
PRK13826		1102	Dtr system oriT relaxase; Provisional	95.49
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	95.47
COG3587		985	Restriction endonuclease [Defense mechanisms]	95.43
COG1484		254	DnaC DNA replication protein [DNA replication, rec	95.36
PRK08903		227	DnaA regulatory inactivator Hda; Validated	95.36
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	95.33
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	95.33
TIGR00064		272	ftsY signal recognition particle-docking protein F	95.24
PRK00149		450	dnaA chromosomal replication initiation protein; R	95.24
COG1444		758	Predicted P-loop ATPase fused to an acetyltransfer	95.17
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	95.14
PRK05642		234	DNA replication initiation factor; Validated	95.11
PRK08116		268	hypothetical protein; Validated	95.1
TIGR01425		429	SRP54_euk signal recognition particle protein SRP5	95.01
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	95.0
PRK12402		337	replication factor C small subunit 2; Reviewed	94.99
PRK06893		229	DNA replication initiation factor; Validated	94.99
PRK00411		394	cdc6 cell division control protein 6; Reviewed	94.98
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	94.93
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	94.93
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	94.93
PHA02244		383	ATPase-like protein	94.93
PRK10867		433	signal recognition particle protein; Provisional	94.89
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	94.88
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	94.88
PRK14087		450	dnaA chromosomal replication initiation protein; P	94.86
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	94.83
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	94.79
PF03354		477	Terminase_1: Phage Terminase ; InterPro: IPR005021	94.77
PRK13833		323	conjugal transfer protein TrbB; Provisional	94.76
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	94.74
PHA03368		738	DNA packaging terminase subunit 1; Provisional	94.72
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	94.71
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	94.67
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	94.66
PRK07471		365	DNA polymerase III subunit delta'; Validated	94.64
TIGR00959		428	ffh signal recognition particle protein. This mode	94.64
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	94.63
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	94.58
PRK12377		248	putative replication protein; Provisional	94.56
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	94.54
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	94.53
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	94.49
PRK08084		235	DNA replication initiation factor; Provisional	94.44
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	94.4
PTZ00112		1164	origin recognition complex 1 protein; Provisional	94.35
PRK11054		684	helD DNA helicase IV; Provisional	94.33
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	94.32
PRK11331		459	5-methylcytosine-specific restriction enzyme subun	94.28
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	94.27
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	94.26
KOG1805		1100	consensus DNA replication helicase [Replication, r	94.2
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	94.2
PF00004		132	AAA: ATPase family associated with various cellula	94.19
PRK06921		266	hypothetical protein; Provisional	94.14
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	94.12
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	94.11
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	94.1
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.09
PRK08939		306	primosomal protein DnaI; Reviewed	94.06
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	94.04
PHA02533		534	17 large terminase protein; Provisional	93.93
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	93.92
cd03115		173	SRP The signal recognition particle (SRP) mediates	93.91
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	93.9
PRK05707		328	DNA polymerase III subunit delta'; Validated	93.77
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	93.77
TIGR02397		355	dnaX_nterm DNA polymerase III, subunit gamma and t	93.74
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	93.7
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	93.67
PHA02544		316	44 clamp loader, small subunit; Provisional	93.62
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	93.6
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	93.58
PRK07940		394	DNA polymerase III subunit delta'; Validated	93.57
KOG1131		755	consensus RNA polymerase II transcription initiati	93.56
COG3973		747	Superfamily I DNA and RNA helicases [General funct	93.55
CHL00181		287	cbbX CbbX; Provisional	93.52
PRK14088		440	dnaA chromosomal replication initiation protein; P	93.51
PRK00440		319	rfc replication factor C small subunit; Reviewed	93.49
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	93.48
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	93.45
TIGR01547		396	phage_term_2 phage terminase, large subunit, PBSX	93.44
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	93.41
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	93.39
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	93.38
PRK13851		344	type IV secretion system protein VirB11; Provision	93.25
PRK06620		214	hypothetical protein; Validated	93.14
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	92.95
PRK13342		413	recombination factor protein RarA; Reviewed	92.85
PRK08533		230	flagellar accessory protein FlaH; Reviewed	92.84
PRK13894		319	conjugal transfer ATPase TrbB; Provisional	92.83
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	92.72
PRK14971		614	DNA polymerase III subunits gamma and tau; Provisi	92.69
KOG2373		514	consensus Predicted mitochondrial DNA helicase twi	92.6
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	92.57
PLN03025		319	replication factor C subunit; Provisional	92.56
COG2256		436	MGS1 ATPase related to the helicase subunit of the	92.48
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	92.46
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	92.41
PRK13900		332	type IV secretion system ATPase VirB11; Provisiona	92.4
PRK10919		672	ATP-dependent DNA helicase Rep; Provisional	92.29
PRK14712		1623	conjugal transfer nickase/helicase TraI; Provision	92.29
PRK07399		314	DNA polymerase III subunit delta'; Validated	92.29
PRK08769		319	DNA polymerase III subunit delta'; Validated	92.26
PRK09087		226	hypothetical protein; Validated	92.26
PRK12422		445	chromosomal replication initiation protein; Provis	92.24
PRK06871		325	DNA polymerase III subunit delta'; Validated	92.19
COG4962		355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	92.09
TIGR03878		259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	92.09
PRK10865		857	protein disaggregation chaperone; Provisional	92.05
PRK08058		329	DNA polymerase III subunit delta'; Validated	92.01
PF01443		234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	91.99
PRK14970		367	DNA polymerase III subunits gamma and tau; Provisi	91.93
PRK06067		234	flagellar accessory protein FlaH; Validated	91.87
PRK04195		482	replication factor C large subunit; Provisional	91.87
cd01130		186	VirB11-like_ATPase Type IV secretory pathway compo	91.67
PRK14086		617	dnaA chromosomal replication initiation protein; P	91.29
COG4626		546	Phage terminase-like protein, large subunit [Gener	91.09
PRK11823		446	DNA repair protein RadA; Provisional	91.05
PRK13709		1747	conjugal transfer nickase/helicase TraI; Provision	90.96
COG2812		515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	90.86
PRK05973		237	replicative DNA helicase; Provisional	90.44
TIGR02524		358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	90.34
TIGR01074		664	rep ATP-dependent DNA helicase Rep. Designed to id	90.31
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	90.28
PF13555		62	AAA_29: P-loop containing region of AAA domain	90.22
COG1435		201	Tdk Thymidine kinase [Nucleotide transport and met	90.18
PRK13341		725	recombination factor protein RarA/unknown domain f	90.12
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	90.07
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	90.06
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	89.97
TIGR01075		715	uvrD DNA helicase II. Designed to identify uvrD me	89.94
PRK06090		319	DNA polymerase III subunit delta'; Validated	89.93
TIGR02788		308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	89.9
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	89.87
PRK06305		451	DNA polymerase III subunits gamma and tau; Validat	89.83
KOG2228		408	consensus Origin recognition complex, subunit 4 [R	89.81
PF03237		384	Terminase_6: Terminase-like family; InterPro: IPR0	89.68
cd01393		226	recA_like RecA is a bacterial enzyme which has rol	89.67
PRK07993		334	DNA polymerase III subunit delta'; Validated	89.66
PRK06964		342	DNA polymerase III subunit delta'; Validated	89.46
TIGR02525		372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	89.4
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	89.38
cd01129		264	PulE-GspE PulE/GspE The type II secretory pathway	89.35
PTZ00293		211	thymidine kinase; Provisional	89.31
PHA00729		226	NTP-binding motif containing protein	89.25
PRK05564		313	DNA polymerase III subunit delta'; Validated	89.21
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	89.07
COG1618		179	Predicted nucleotide kinase [Nucleotide transport	88.94
PRK04841		903	transcriptional regulator MalT; Provisional	88.9
COG3267		269	ExeA Type II secretory pathway, component ExeA (pr	88.74
PF13207		121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	88.67
TIGR02655		484	circ_KaiC circadian clock protein KaiC. Members of	88.55
COG0541		451	Ffh Signal recognition particle GTPase [Intracellu	88.53
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	88.38
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	88.28
TIGR02639		731	ClpA ATP-dependent Clp protease ATP-binding subuni	88.02
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	88.0
COG0466		782	Lon ATP-dependent Lon protease, bacterial type [Po	87.97
TIGR03877		237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	87.88
TIGR01073		726	pcrA ATP-dependent DNA helicase PcrA. Designed to	87.82
COG0552		340	FtsY Signal recognition particle GTPase [Intracell	87.74
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	87.74
PRK11773		721	uvrD DNA-dependent helicase II; Provisional	87.71
COG0593		408	DnaA ATPase involved in DNA replication initiation	87.69
COG1074		1139	RecB ATP-dependent exoDNAse (exonuclease V) beta s	87.6
PRK03992		389	proteasome-activating nucleotidase; Provisional	87.59
TIGR00767		415	rho transcription termination factor Rho. Members	87.56
CHL00095		821	clpC Clp protease ATP binding subunit	87.55
KOG2028		554	consensus ATPase related to the helicase subunit o	87.17
PF12846		304	AAA_10: AAA-like domain	87.11
TIGR02785		1232	addA_Gpos recombination helicase AddA, Firmicutes	86.96
KOG2036		1011	consensus Predicted P-loop ATPase fused to an acet	86.88
COG3598		402	RepA RecA-family ATPase [DNA replication, recombin	86.74
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	86.66
COG0630		312	VirB11 Type IV secretory pathway, VirB11 component	86.62
COG1126		240	GlnQ ABC-type polar amino acid transport system, A	86.44
CHL00176		638	ftsH cell division protein; Validated	86.3
PRK10436		462	hypothetical protein; Provisional	86.2
PF13671		143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	86.11
COG0467		260	RAD55 RecA-superfamily ATPases implicated in signa	86.04
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	85.95
PF12775		272	AAA_7: P-loop containing dynein motor region D3; P	85.91
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	85.91
COG2255		332	RuvB Holliday junction resolvasome, helicase subun	85.9
PRK04328		249	hypothetical protein; Provisional	85.88
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	85.85
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	85.73
TIGR00763		775	lon ATP-dependent protease La. This protein is ind	85.66
KOG0741		744	consensus AAA+-type ATPase [Posttranslational modi	85.56
PF13238		129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	85.51
TIGR02655		484	circ_KaiC circadian clock protein KaiC. Members of	85.5
TIGR02538		564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	85.47
cd01128		249	rho_factor Transcription termination factor rho is	85.36
TIGR00602		637	rad24 checkpoint protein rad24. This family is bas	85.35
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	85.32
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	85.26
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	85.25
PRK13764		602	ATPase; Provisional	85.21
TIGR01243		733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	85.18
cd00984		242	DnaB_C DnaB helicase C terminal domain. The hexame	84.98
TIGR03819		340	heli_sec_ATPase helicase/secretion neighborhood AT	84.96
PRK13695		174	putative NTPase; Provisional	84.95
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	84.85
TIGR03263		180	guanyl_kin guanylate kinase. Members of this famil	84.77
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	84.44
PRK10787		784	DNA-binding ATP-dependent protease La; Provisional	84.44
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	84.21
PRK05917		290	DNA polymerase III subunit delta'; Validated	83.93
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	83.92
COG1221		403	PspF Transcriptional regulators containing an AAA-	83.91
TIGR02533		486	type_II_gspE general secretory pathway protein E.	83.76
KOG0744		423	consensus AAA+-type ATPase [Posttranslational modi	83.7
COG1219		408	ClpX ATP-dependent protease Clp, ATPase subunit [P	83.55
TIGR03881		229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	83.39
PRK00300		205	gmk guanylate kinase; Provisional	83.38
COG2909		894	MalT ATP-dependent transcriptional regulator [Tran	83.3
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	83.18
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	83.16
cd02034		116	CooC The accessory protein CooC, which contains a	83.07
KOG2004		906	consensus Mitochondrial ATP-dependent protease PIM	83.04
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	83.01
PRK08699		325	DNA polymerase III subunit delta'; Validated	82.96
PF01580		205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	82.95
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	82.91
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	82.79
PRK05580		679	primosome assembly protein PriA; Validated	82.76
COG0542		786	clpA ATP-binding subunits of Clp protease and DnaK	82.51
COG1136		226	SalX ABC-type antimicrobial peptide transport syst	82.48
PHA00149		331	DNA encapsidation protein	82.45
cd00071		137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	82.4
cd03246		173	ABCC_Protease_Secretion This family represents the	82.22
PLN02165		334	adenylate isopentenyltransferase	82.02
TIGR01243		733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	81.72
KOG0780		483	consensus Signal recognition particle, subunit Srp	81.61
PRK08233		182	hypothetical protein; Provisional	81.56
PRK14530		215	adenylate kinase; Provisional	81.54
PRK14729		300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	81.41
TIGR01817		534	nifA Nif-specific regulatory protein. This model r	81.32
KOG0733		802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	81.25
COG1222		406	RPT1 ATP-dependent 26S proteasome regulatory subun	81.19
PRK11034		758	clpA ATP-dependent Clp protease ATP-binding subuni	81.08
COG5008		375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	81.08
TIGR00595		505	priA primosomal protein N'. All proteins in this f	81.07
cd00820		107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	81.0
TIGR02784		1141	addA_alphas double-strand break repair helicase Ad	80.99
COG3839		338	MalK ABC-type sugar transport systems, ATPase comp	80.89
PRK10078		186	ribose 1,5-bisphosphokinase; Provisional	80.81
PRK08118		167	topology modulation protein; Reviewed	80.75
TIGR01241		495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	80.5
CHL00195		489	ycf46 Ycf46; Provisional	80.46
PRK09376		416	rho transcription termination factor Rho; Provisio	80.39
PRK07261		171	topology modulation protein; Provisional	80.35
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	80.28
TIGR03880		224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	80.16
cd00544		169	CobU Adenosylcobinamide kinase / adenosylcobinamid	80.15
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	80.02
PLN03186		342	DNA repair protein RAD51 homolog; Provisional	80.01

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=8.7e-135  Score=1210.82  Aligned_cols=815  Identities=49%  Similarity=0.790  Sum_probs=724.7

Q ss_pred             chhHHHHHHHhhhcCCCcccchhccccCcccHHHHHHHHHHhcccccccc--eEEEEecCCCCCCccccccCC--Ccccc
Q 001817          132 NIDEWRWKLTMLLRNKDEQEVVSRAKKDRRDFEQLSALATRMGLHSRQYA--KVVVFSKAPLPNYRSDLDEKR--PQREV  207 (1009)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~  207 (1009)
                      ++..|.++.++.......+|++....+++.+++.|+++...++.++..+.  ...++++.+.|++..+++...  ++.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  102 (924)
T KOG0920|consen   23 DSHAWLRDSSSSKEMTDDDEVIRALTQSRLPKNLLEKLIQIARSSSTAKNLMKFHTVSKITEPSRLLDLSPKPMTLQAKL  102 (924)
T ss_pred             cccccccCccccccccCcceeehhccccCcccccchHHHHHHHhhhhhhhcccceeeeccCCCCceeeecccccchhhhh
Confidence            78888777775445566689999999999999999999999999866664  678999999999999888875  77777


Q ss_pred             ccchhhHHHHHHHHHHHHHHhhccccccccccCCCC--CCCccchhhhHHhhhhhHHHHHHHHHhhHHHHHHHHHHhcCh
Q 001817          208 ILPFGLLREVDAHLKAYLSQKYINASMSSLSNVGST--TNDEGLYEQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESP  285 (1009)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  285 (1009)
                      ....+...+...++.++.+.....+...... ..+.  ..|+...+.                  +..   .+..|..+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~------------------s~~---~~~~~~~s~  160 (924)
T KOG0920|consen  103 KLKAEAENKAAALVCKLLESLKLVDRNNENL-LLPTTGQKDEPLLKK------------------SIS---RQSEPKKSE  160 (924)
T ss_pred             eecccccchhHHHHHHHHHHhccCCCccccc-ccccccccccccCcc------------------hhh---hhchhhhhh
Confidence            8888887788877877765543111111100 0110  111111111                  000   556778899


Q ss_pred             hhHHHHHhhcCCCCHHHHHHHHHHHHcCCeEEEEecCCCchhhhHHHHHHHHHHHHhcCCceEEEechhHHHHHHHHHHH
Q 001817          286 EGQKMLEFRRSLPSYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSER  365 (1009)
Q Consensus       286 ~~~~l~~~r~~LPi~~~q~~il~~l~~~~~vII~apTGSGKTt~~~~~ile~~~~~~~~~~~~IvvtqPrR~La~qva~r  365 (1009)
                      .++++++.|.+||++.++++|++++.++++++|+|+||||||||+||+|++..+..+  ..|+|+||||||+.|+++|+|
T Consensus       161 ~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeR  238 (924)
T KOG0920|consen  161 SYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAER  238 (924)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988754  789999999999999999999


Q ss_pred             HHHHhCCcccceeeeeeeeccccCCCcEEEEEccHHHHHHHhcCCCCCCccEEEEeCCCcCCCcchHHHHHHHHHcccCC
Q 001817          366 VAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRP  445 (1009)
Q Consensus       366 va~e~~~~~g~~vGy~vr~e~~~~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEaHeR~~~~d~ll~llk~ll~~~~  445 (1009)
                      |+.|+++..|..|||++|.++..+..+.++|||+|+||+.|+.++.+.+++|||+||+|||++++|+++.+++.++..+|
T Consensus       239 Va~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p  318 (924)
T KOG0920|consen  239 VAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP  318 (924)
T ss_pred             HHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEeccCCCHHHHHhhhCCCCeeccCCcccceeeEehhhHHHHhhhccCcccccccchhhhHHHHHHHHHHHHhhhh
Q 001817          446 ELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKS  525 (1009)
Q Consensus       446 ~lkvIlmSATl~~~~~~~yf~~~pvi~i~g~~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  525 (1009)
                      ++|+|+||||+|++.|++||+++|+++|+|++|||..+|+||++..++|........  .+.+..               
T Consensus       319 ~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~--~~~~~~---------------  381 (924)
T KOG0920|consen  319 DLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR--SGPERS---------------  381 (924)
T ss_pred             CceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc--cccccC---------------
Confidence            999999999999999999999999999999999999999999999998766543222  000000               


Q ss_pred             hHHHHHHHHHHHhhhcchhhhhhhccccCCCCCcchhhHHHHHHHHHhhcCCCcEEEEcCCHhHHHHHHHHHHcCCCCCC
Q 001817          526 SIASAVEDALEAADFREYSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD  605 (1009)
Q Consensus       526 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~  605 (1009)
                              .+.           ...+..|.++ ++++++..++.+|+.....|.||||+||+++|..+.+.|..+..+.+
T Consensus       382 --------~~~-----------~~~~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~  441 (924)
T KOG0920|consen  382 --------QLR-----------LARLKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD  441 (924)
T ss_pred             --------ccc-----------cccchhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc
Confidence                    000           0002223333 89999999999999998899999999999999999999998777776


Q ss_pred             CCCeEEEEecCCCCHHHHHhhcCCCCCCceEEEEecCccccccCCCCeeEEEeCCCCccccccCCCCCCcccccccCHHh
Q 001817          606 PSRVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAA  685 (1009)
Q Consensus       606 ~~~~~v~~lHs~l~~~er~~v~~~f~~G~~kVLVATniae~GIdIp~V~~VId~g~~k~~~yd~~~~~~~l~~~~iS~as  685 (1009)
                      ..++.+.++||.|+..||+.||...+.|.+|||+||||||+|||||||.||||+|+.|++.||+..+++++...|+|+++
T Consensus       442 ~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAn  521 (924)
T KOG0920|consen  442 SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKAN  521 (924)
T ss_pred             ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccCCCCCCcEEEecchhhhhhhcc-CCCccccccCchhhhhHhhhcCcCCHHHHHHhhcCCCChhhHHHHHHHH
Q 001817          686 ARQRRGRAGRVQPGECYHLYPRYVYDAFAD-YQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVKNAIEYL  764 (1009)
Q Consensus       686 ~~QR~GRAGR~~~G~c~~Lys~~~~~~l~~-~~~PEi~r~~L~~~~L~lk~l~~~~~~~fl~~~l~pP~~~~v~~al~~L  764 (1009)
                      +.||+|||||+++|.||+||++..|+.+.. +++|||+|.+|+++||++|.++.+++.+||+++++||+..++..|+..|
T Consensus       522 a~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L  601 (924)
T KOG0920|consen  522 AKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERL  601 (924)
T ss_pred             hHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHH
Confidence            999999999999999999999999999777 9999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccCCCCcChhhhhcccCCCChhHHHHHHHhhhhCCcchHHHHHHhhcCCCccccCcChHHHHHHHHhhhccCChh
Q 001817          765 QIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYS  844 (1009)
Q Consensus       765 ~~lgald~~~~lT~lG~~ls~lpl~p~~~k~ll~~~~~~c~~~~l~i~a~ls~~~~f~~p~~~~~~~~~~~~~f~~~~~s  844 (1009)
                      ..+|||+.+++||+||++++.||+||++|||+++|+.|+|+||+++|||+|+.++||+.|.++++.++++++.|..+..|
T Consensus       602 ~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~S  681 (924)
T KOG0920|consen  602 KQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSIS  681 (924)
T ss_pred             HHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877789


Q ss_pred             hHHHHHHHHHHHHHHhhc--ccchhhHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCCC------CCcCCCCCCCCHHHH
Q 001817          845 DHLALVRAYDGWKDAERH--QSGYEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDR------NTENCNKWSHDEHLI  916 (1009)
Q Consensus       845 Dhl~~l~~f~~w~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~------~~~~~~~~s~~~~~i  916 (1009)
                      |||++++||+.|++....  ....+||++||||..+|+++.++|.||.+.|.+.|++..      ....+|.++.+++++
T Consensus       682 D~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~i  761 (924)
T KOG0920|consen  682 DHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELV  761 (924)
T ss_pred             hHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHH
Confidence            999999999999998876  567899999999999999999999999999999999875      345678899999999


Q ss_pred             HHHHHhccCCCcccccc---ccccceeEeecCCEEEEecCCCCCCCCCCCCCeEEEeeehhccc-ceeeeccccCHHHHH
Q 001817          917 RAVICAGLFPGLCSVVN---KEKSIALKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKIKVNS-VFLRDSTGVSDSVLL  992 (1009)
Q Consensus       917 ~~~l~ag~~pnva~~~~---~~~~~~~~~~~~~~v~ihpsSv~~~~~~~~~~~vvy~e~~~t~~-~~ir~~t~v~~~~l~  992 (1009)
                      +++||||||||++.+..   ..+...|.+..++.|.+||+|||.+...+..+|++|+|+++|++ .|+|++|.|++..++
T Consensus       762 ravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~l  841 (924)
T KOG0920|consen  762 RAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALL  841 (924)
T ss_pred             HHHHhccCCCceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHhe
Confidence            99999999999999875   44556677777889999999999988888888999999999999 999999999999999


Q ss_pred             HhcCccc-cCCCCCCC
Q 001817          993 LFGGNIS-RGGLVSCL 1007 (1009)
Q Consensus       993 lfgg~~~-~~~~~~~~ 1007 (1009)
                      ||||... ..+..|++
T Consensus       842 lfgg~~~~~~~~~~~~  857 (924)
T KOG0920|consen  842 LFGGGISTVRMKSGSL  857 (924)
T ss_pred             eecCCceeecCCCCcc
Confidence            9999887 66665553

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG2340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK10416 signal recognition particle-docking protein FtsY; Provisional	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>TIGR03499 FlhF flagellar biosynthetic protein FlhF	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PRK00771 signal recognition particle protein Srp54; Provisional	Back alignment and domain information

>PRK13826 Dtr system oriT relaxase; Provisional	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR00064 ftsY signal recognition particle-docking protein FtsY	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>TIGR01425 SRP54_euk signal recognition particle protein SRP54	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>PRK10867 signal recognition particle protein; Provisional	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase)	Back alignment and domain information

>PRK13833 conjugal transfer protein TrbB; Provisional	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PHA03368 DNA packaging terminase subunit 1; Provisional	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR00959 ffh signal recognition particle protein	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PRK11054 helD DNA helicase IV; Provisional	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PRK08939 primosomal protein DnaI; Reviewed	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK13851 type IV secretion system protein VirB11; Provisional	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>PRK08533 flagellar accessory protein FlaH; Reviewed	Back alignment and domain information

>PRK13894 conjugal transfer ATPase TrbB; Provisional	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK13900 type IV secretion system ATPase VirB11; Provisional	Back alignment and domain information

>PRK10919 ATP-dependent DNA helicase Rep; Provisional	Back alignment and domain information

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>PRK07399 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases	Back alignment and domain information

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>COG4626 Phage terminase-like protein, large subunit [General function prediction only]	Back alignment and domain information

>PRK11823 DNA repair protein RadA; Provisional	Back alignment and domain information

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05973 replicative DNA helicase; Provisional	Back alignment and domain information

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB	Back alignment and domain information

>TIGR01074 rep ATP-dependent DNA helicase Rep	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PF13555 AAA_29: P-loop containing region of AAA domain	Back alignment and domain information

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR01075 uvrD DNA helicase II	Back alignment and domain information

>PRK06090 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>PRK06305 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]	Back alignment and domain information

>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []	Back alignment and domain information

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)	Back alignment and domain information

>PTZ00293 thymidine kinase; Provisional	Back alignment and domain information

>PHA00729 NTP-binding motif containing protein	Back alignment and domain information

>PRK05564 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A	Back alignment and domain information

>TIGR02655 circ_KaiC circadian clock protein KaiC	Back alignment and domain information

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family	Back alignment and domain information

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA	Back alignment and domain information

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>PRK11773 uvrD DNA-dependent helicase II; Provisional	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK03992 proteasome-activating nucleotidase; Provisional	Back alignment and domain information

>TIGR00767 rho transcription termination factor Rho	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]	Back alignment and domain information

>PF12846 AAA_10: AAA-like domain	Back alignment and domain information

>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type	Back alignment and domain information

>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	Back alignment and domain information

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>CHL00176 ftsH cell division protein; Validated	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B	Back alignment and domain information

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK04328 hypothetical protein; Provisional	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>TIGR00763 lon ATP-dependent protease La	Back alignment and domain information

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C	Back alignment and domain information

>TIGR02655 circ_KaiC circadian clock protein KaiC	Back alignment and domain information

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB	Back alignment and domain information

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase	Back alignment and domain information

>TIGR00602 rad24 checkpoint protein rad24	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>PRK13764 ATPase; Provisional	Back alignment and domain information

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>cd00984 DnaB_C DnaB helicase C terminal domain	Back alignment and domain information

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase	Back alignment and domain information

>PRK13695 putative NTPase; Provisional	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03263 guanyl_kin guanylate kinase	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>PRK10787 DNA-binding ATP-dependent protease La; Provisional	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK05917 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>TIGR02533 type_II_gspE general secretory pathway protein E	Back alignment and domain information

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family	Back alignment and domain information

>PRK00300 gmk guanylate kinase; Provisional	Back alignment and domain information

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)	Back alignment and domain information

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>PRK08699 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PHA00149 DNA encapsidation protein	Back alignment and domain information

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>PLN02165 adenylate isopentenyltransferase	Back alignment and domain information

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily	Back alignment and domain information

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK08233 hypothetical protein; Provisional	Back alignment and domain information

>PRK14530 adenylate kinase; Provisional	Back alignment and domain information

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional	Back alignment and domain information

>TIGR01817 nifA Nif-specific regulatory protein	Back alignment and domain information

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional	Back alignment and domain information

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	Back alignment and domain information

>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type	Back alignment and domain information

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10078 ribose 1,5-bisphosphokinase; Provisional	Back alignment and domain information

>PRK08118 topology modulation protein; Reviewed	Back alignment and domain information

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH	Back alignment and domain information

>CHL00195 ycf46 Ycf46; Provisional	Back alignment and domain information

>PRK09376 rho transcription termination factor Rho; Provisional	Back alignment and domain information

>PRK07261 topology modulation protein; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family	Back alignment and domain information

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PLN03186 DNA repair protein RAD51 homolog; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1009
3kx2_B		767	Crystal Structure Of Prp43p In Complex With Adp Len		5e-44
2xau_A		773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		5e-44
3llm_A		235	Crystal Structure Analysis Of A Rna Helicase Length		1e-39
3i4u_A		270	Crystal Structure Analysis Of A Helicase Associated		4e-26

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Back alignment and structure

Iteration: 1

Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 136/438 (31%), Positives = 219/438 (50%), Gaps = 35/438 (7%) Query: 567 VLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGD---------PSRVLLLACHGS 617 + I E G +L+F+TG D+I +D ++ L GD P V L +GS Sbjct: 293 TVLQIHATEEAGDILLFLTGEDEI---EDAVRKISLEGDQLVREEGCGPLSVYPL--YGS 347 Query: 618 MASSEQRLIFDK-PEDGV----RKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNN 672 + +Q+ IF+ PE RK+V++TN+AETS+TI+ +V+V+D G +K+ Y+ Sbjct: 348 LPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIR 407 Query: 673 TPCLLPSWISKXXXXXXXXXXXXVQPGECYHLYPRYVYDA-FADYQLPELLRTPLQSLCL 731 LL S ISK +PG+C+ LY + + PE+LR+ L S L Sbjct: 408 VESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVL 467 Query: 732 QIKSLQLGSISEFLSRALQPPEPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPK 791 ++K L + + F + PP P ++ A+E L + LD+ NLT LGR S P++P Sbjct: 468 ELKKLGIDDLVHF--DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPM 525 Query: 792 LGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVR 851 L MLI F C ++T+VA LSV + F+ P K A+ AK F+ D DH+ L+ Sbjct: 526 LAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLN 584 Query: 852 AYDGWKDAERHQSG-YEYCWKNFLSAQTLKAIDSLRKQFLFLLKDAGLVDRNTENCNKWS 910 Y +K E ++ G +++C ++L+ ++L A D++R Q L+ L T+ + Sbjct: 585 VYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKY 644 Query: 911 HDEHLIRAVICAGLFPGLCSVVNKEKSIA--LKTMEDGQVLLYSNSVNAGVPKIPYPWLV 968 D IR + +G F V K++S A T++D Q +L S G W++ Sbjct: 645 FDN--IRKALASGFF----MQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDA---EWVI 695 Query: 969 FNEKIKVNSVFLRDSTGV 986 +NE + + ++R T V Sbjct: 696 YNEFVLTSKNYIRTVTSV 713

PyMOL of 3kx2

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Back alignment and structure

>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235

Back alignment and structure

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1009
2xau_A		773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	1e-174
3llm_A		235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	1e-115
3i4u_A		270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	6e-42
2z83_A		459	Helicase/nucleoside triphosphatase; hydrolase, mem	4e-34
2z83_A		459	Helicase/nucleoside triphosphatase; hydrolase, mem	5e-27
2jlq_A		451	Serine protease subunit NS3; ribonucleoprotein, nu	6e-33
2jlq_A		451	Serine protease subunit NS3; ribonucleoprotein, nu	3e-30
3o8b_A		666	HCV NS3 protease/helicase; ntpase, RNA, translocat	2e-32
3o8b_A		666	HCV NS3 protease/helicase; ntpase, RNA, translocat	3e-28
2v6i_A		431	RNA helicase; membrane, hydrolase, transmembrane,	4e-32
2v6i_A		431	RNA helicase; membrane, hydrolase, transmembrane,	3e-27
1yks_A		440	Genome polyprotein [contains: flavivirin protease	1e-30
1yks_A		440	Genome polyprotein [contains: flavivirin protease	6e-25
2whx_A		618	Serine protease/ntpase/helicase NS3; transcription	7e-29
2whx_A		618	Serine protease/ntpase/helicase NS3; transcription	8e-29
2wv9_A		673	Flavivirin protease NS2B regulatory subunit, FLAV	1e-26
2wv9_A		673	Flavivirin protease NS2B regulatory subunit, FLAV	4e-26
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-14
2zj8_A		720	DNA helicase, putative SKI2-type helicase; RECA fo	1e-05
2p6r_A		702	Afuhel308 helicase; protein-DNA complex, SF2 helic	9e-05
2va8_A		715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	2e-04
2xgj_A		1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	9e-04

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773	Back alignment and structure

 Score =  526 bits (1356), Expect = e-174
 Identities = 230/759 (30%), Positives = 364/759 (47%), Gaps = 107/759 (14%)

Query: 251 EQQEQLVQNSVVRERILRQRSLQMHEKQQAWQESPEG--------QKMLEFRRSLPSYKE 302
           E+          +       S +  +K +  + +P            +L+ RR LP + +
Sbjct: 39  EEPLVHHDAGEFKGLQRHHTSAEEAQKLEDGKINPFTGREFTPKYVDILKIRRELPVHAQ 98

Query: 303 RDALLKAISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAV 362
           RD  LK    NQ++V  GETG GKTTQ+PQ++L  E          + CTQPRR++AM+V
Sbjct: 99  RDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDE--MPHLENTQVACTQPRRVAAMSV 156

Query: 363 SERVAAERGEKLGESVGYKVRLEGMKGRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDE 422
           ++RVA E   KLGE VGY +R E      T L + T G+LLR  + D  L   + +I+DE
Sbjct: 157 AQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDE 216

Query: 423 IHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRA 482
            HER +  D L+ +LK+++ RRP+L++I+MSATL+AE F  YF  A     P    P R 
Sbjct: 217 AHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA-----PLLAVPGRT 271

Query: 483 YFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFRE 542
           Y +E       Y                                      D L++A    
Sbjct: 272 YPVE-----LYYT--------------------------------PEFQRDYLDSA---- 290

Query: 543 YSVQTQQSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINS----LKDQLQ 598
             ++T                    +  I   E  G +L+F+TG D+I      +  +  
Sbjct: 291 --IRT--------------------VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD 328

Query: 599 AHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGV-----RKIVLATNMAETSITINDV 653
                     + +   +GS+   +Q+ IF+   +       RK+V++TN+AETS+TI+ +
Sbjct: 329 QLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGI 388

Query: 654 VFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRYVYDA- 712
           V+V+D G +K+  Y+       LL S ISKA+A+QR GRAGR +PG+C+ LY    +   
Sbjct: 389 VYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKE 448

Query: 713 FADYQLPELLRTPLQSLCLQIKSLQLGSIS--EFLSRALQPPEPLSVKNAIEYLQIIGAL 770
             +   PE+LR+ L S  L++K L +  +   +F+     PP P ++  A+E L  +  L
Sbjct: 449 LIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMD----PPAPETMMRALEELNYLACL 504

Query: 771 DENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDL 830
           D+  NLT LGR  S  P++P L  MLI    F C   ++T+VA LSV + F+ P   K  
Sbjct: 505 DDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKR 564

Query: 831 AESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGY-EYCWKNFLSAQTLKAIDSLRKQF 889
           A+ AK  F+  D  DH+ L+  Y  +K  E ++ G  ++C  ++L+ ++L A D++R Q 
Sbjct: 565 ADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQL 623

Query: 890 LFLLKDAGLVDRNTENCNKWSHDEHLIRAVICAGLFPGLCSVVNKEKSIAL-KTMEDGQ- 947
             L+    L    T+  +    D   IR  + +G F     V  K        T++D Q 
Sbjct: 624 ERLMNRYNLELNTTDYESPKYFDN--IRKALASGFFM---QVAKKRSGAKGYITVKDNQD 678

Query: 948 VLLYSNSVNAGVPKIPYPWLVFNEKIKVNSVFLRDSTGV 986
           VL++ ++V     +    W+++NE +  +  ++R  T V
Sbjct: 679 VLIHPSTVLGHDAE----WVIYNEFVLTSKNYIRTVTSV 713

PyMOL of 2xau

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235	Back alignment and structure

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270	Back alignment and structure

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459	Back alignment and structure

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459	Back alignment and structure

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451	Back alignment and structure

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451	Back alignment and structure

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666	Back alignment and structure

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666	Back alignment and structure

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431	Back alignment and structure

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431	Back alignment and structure

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440	Back alignment and structure

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440	Back alignment and structure

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618	Back alignment and structure

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618	Back alignment and structure

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673	Back alignment and structure

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720	Back alignment and structure

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702	Back alignment and structure

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715	Back alignment and structure

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1009
d1yksa2		299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	4e-31
d1a1va1		136	c.37.1.14 (A:190-325) HCV helicase domain {Human h	4e-24
d2bmfa2		305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	2e-22
d2bmfa2		305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	7e-16
d1yksa1		140	c.37.1.14 (A:185-324) YFV helicase domain {Yellow	2e-14
d1wp9a2		286	c.37.1.19 (A:201-486) putative ATP-dependent RNA h	3e-06
d1gkub1		237	c.37.1.16 (B:1-250) Helicase-like "domain" of reve	0.001
d1mv5a_		242	c.37.1.12 (A:) Multidrug resistance ABC transporte	0.002
d2p6ra3		202	c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus	0.003

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  122 bits (307), Expect = 4e-31
 Identities = 47/308 (15%), Positives = 82/308 (26%), Gaps = 45/308 (14%)

Query: 575 ERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGV 634
                   F+      N +   L+          V++L  +      E   I  K     
Sbjct: 34  ADKRPTAWFLPSIRAANVMAASLRKAGK-----SVVVL--NRKTFEREYPTIKQKK---- 82

Query: 635 RKIVLATNMAETSITINDVVFVIDCGKA-KETSYDALNNTPCLLPSWISKAAARQRRGRA 693
              +LAT++AE    +  V  V+DC  A K    D         P  IS ++A QRRGR 
Sbjct: 83  PDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRI 141

Query: 694 GRVQPGE-CYHLYPRYVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPP 752
           GR    +   + Y     +  A +         L ++ ++   +      E         
Sbjct: 142 GRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEG--TKTPVS 199

Query: 753 EPLSVKNAIEYLQIIGALDENENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPVMTVV 812
                    +       +   +    L   ++   ++    K                  
Sbjct: 200 PGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWC---------------- 243

Query: 813 AGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYDGWKDAERHQSGYEYCWKN 872
                   F  P + + L +S +             L      W D  R  S        
Sbjct: 244 --------FEGPEEHEILNDSGETVKCRAPGGAKKPL---RPRWCDE-RVSSDQS-ALSE 290

Query: 873 FLSAQTLK 880
           F+     +
Sbjct: 291 FIKFAEGR 298

PyMOL of d1yksa2

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136	Back information, alignment and structure

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305	Back information, alignment and structure

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1009
d2bmfa2		305	Dengue virus helicase {Dengue virus type 2 [TaxId:	100.0
d1yksa2		299	YFV helicase domain {Yellow fever virus [TaxId: 11	99.97
d1veca_		206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	99.89
d2j0sa1		222	Probable ATP-dependent RNA helicase DDX48 {Human (	99.89
d2g9na1		218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	99.89
d1qdea_		212	Initiation factor 4a {Baker's yeast (Saccharomyces	99.89
d2p6ra3		202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.88
d1t6na_		207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.88
d1hv8a1		208	Putative DEAD box RNA helicase {Archaeon Methanoco	99.87
d1oywa3		200	RecQ helicase domain {Escherichia coli [TaxId: 562	99.86
d1fuka_		162	Initiation factor 4a {Baker's yeast (Saccharomyces	99.85
d1s2ma2		171	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.85
d1c4oa2		174	Nucleotide excision repair enzyme UvrB {Thermus th	99.85
d1t5la2		181	Nucleotide excision repair enzyme UvrB {Bacillus c	99.85
d2j0sa2		168	Probable ATP-dependent RNA helicase DDX48 {Human (	99.84
d1s2ma1		206	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.84
d2rb4a1		168	ATP-dependent RNA helicase DDX25 {Human (Homo sapi	99.84
d1wrba1		238	putative ATP-dependent RNA helicase VlgB {Flatworm	99.84
d1q0ua_		209	Probable DEAD box RNA helicase YqfR {Bacillus stea	99.83
d1hv8a2		155	Putative DEAD box RNA helicase {Archaeon Methanoco	99.83
d1t5ia_		168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.83
d1gkub1		237	Helicase-like "domain" of reverse gyrase {Archaeon	99.81
d1wp9a2		286	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.8
d1wp9a1		200	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.79
d2p6ra4		201	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.79
d1a1va1		136	HCV helicase domain {Human hepatitis C virus (HCV)	99.78
d1oywa2		206	RecQ helicase domain {Escherichia coli [TaxId: 562	99.77
d1yksa1		140	YFV helicase domain {Yellow fever virus [TaxId: 11	99.75
d1jr6a_		138	HCV helicase domain {Human hepatitis C virus (HCV)	99.73
d1a1va2		299	HCV helicase domain {Human hepatitis C virus (HCV)	99.66
d1rifa_		282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	99.63
d2fz4a1		206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.62
d1gm5a4		206	RecG helicase domain {Thermotoga maritima [TaxId:	99.61
d2eyqa5		211	Transcription-repair coupling factor, TRCF {Escher	99.61
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	99.58
d2fwra1		200	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.53
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	99.46
d1gkub2		248	Helicase-like "domain" of reverse gyrase {Archaeon	99.44
d1z3ix1		346	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	99.03
d1z5za1		244	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	98.83
d1z3ix2		298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	98.8
d1tf5a4		175	Translocation ATPase SecA, nucleotide-binding doma	98.74
d1z63a1		230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	98.58
d1w36d1		359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.44
d1nkta4		219	Translocation ATPase SecA, nucleotide-binding doma	97.95
d1tf5a3		273	Translocation ATPase SecA, nucleotide-binding doma	97.9
d1okkd2		207	GTPase domain of the signal recognition particle r	97.74
d1nkta3		288	Translocation ATPase SecA, nucleotide-binding doma	97.7
d1vmaa2		213	GTPase domain of the signal recognition particle r	97.67
d2qy9a2		211	GTPase domain of the signal recognition particle r	97.63
d1ls1a2		207	GTPase domain of the signal sequence recognition p	97.59
d1uaaa1		306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	97.29
d1j8yf2		211	GTPase domain of the signal sequence recognition p	97.11
g1qhh.1		623	DEXX box DNA helicase {Bacillus stearothermophilus	97.02
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	96.99
d1pjra1		318	DEXX box DNA helicase {Bacillus stearothermophilus	96.95
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	96.71
d1sxjc2		227	Replication factor C3 {Baker's yeast (Saccharomyce	96.63
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	96.47
d1sxjb2		224	Replication factor C4 {Baker's yeast (Saccharomyce	96.19
d2gnoa2		198	gamma subunit of DNA polymerase III, N-domain {The	96.11
d1g6oa_		323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.04
d1sxjd2		237	Replication factor C2 {Baker's yeast (Saccharomyce	95.75
d1l8qa2		213	Chromosomal replication initiation factor DnaA {Aq	95.39
d1sxje2		252	Replication factor C5 {Baker's yeast (Saccharomyce	95.34
d1t5la1		413	Nucleotide excision repair enzyme UvrB {Bacillus c	94.92
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	94.61
d1p9ra_		401	Extracellular secretion NTPase EpsE {Vibrio choler	94.56
d1ixza_		247	AAA domain of cell division protein FtsH {Thermus	93.96
d1e32a2		258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.56
d2b8ta1		139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.43
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	93.41
d1cr2a_		277	Gene 4 protein (g4p, DNA primase), helicase domain	93.38
d1g41a_		443	HslU {Haemophilus influenzae [TaxId: 727]}	93.19
d2i3ba1		189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.19
d1tf7a2		242	Circadian clock protein KaiC {Synechococcus sp. st	92.73
d1w36b1		485	Exodeoxyribonuclease V beta chain (RecB), N-termin	92.67
d3adka_		194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.42
d1e9ra_		433	Bacterial conjugative coupling protein TrwB {Esche	92.3
d2p6ra1		85	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.13
d1pzna2		254	DNA repair protein Rad51, catalytic domain {Archae	92.02
d1ly1a_		152	Polynucleotide kinase, kinase domain {Bacteriophag	91.99
d1khta_		190	Adenylate kinase {Archaeon Methanococcus voltae [T	91.95
d1xx6a1		141	Thymidine kinase, TK1, N-terminal domain {Clostrid	91.79
d1ny5a2		247	Transcriptional activator sigm54 (NtrC1), C-termin	91.59
d1r6bx2		268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.56
d1zp6a1		176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.19
d1fnna2		276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	91.0
d1n0wa_		242	DNA repair protein Rad51, catalytic domain {Human	90.56
d1lw7a2		192	Transcriptional regulator NadR, ribosylnicotinamid	90.37
d1qhxa_		178	Chloramphenicol phosphotransferase {Streptomyces v	90.36
d1knqa_		171	Gluconate kinase {Escherichia coli [TaxId: 562]}	90.29
d2bdta1		176	Hypothetical protein BH3686 {Bacillus halodurans [	90.14
d1sgwa_		200	Putative ABC transporter PF0895 {Pyrococcus furios	89.96
d1qvra3		315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.95
d1ofha_		309	HslU {Haemophilus influenzae [TaxId: 727]}	89.91
d1ukza_		196	Uridylate kinase {Baker's yeast (Saccharomyces cer	89.61
d1tf7a1		242	Circadian clock protein KaiC {Synechococcus sp. st	89.59
d1znwa1		182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	89.56
d1qf9a_		194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	89.55
d1y63a_		174	Probable kinase LmjF30.1890 {Leishmania major [Tax	89.49
d1in4a2		238	Holliday junction helicase RuvB {Thermotoga mariti	89.47
d1teva_		194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	89.44
d1rkba_		173	Adenylate kinase {Human (Homo sapiens), isoenzyme	89.12
d1zaka1		189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	89.07
d1kaga_		169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	89.02
d1szpa2		251	DNA repair protein Rad51, catalytic domain {Baker'	88.96
d1e4va1		179	Adenylate kinase {Escherichia coli [TaxId: 562]}	88.79
d1ak2a1		190	Adenylate kinase {Cow (Bos taurus), mitochondrial	88.74
d1s3ga1		182	Adenylate kinase {Bacillus globisporus [TaxId: 145	88.72
d1r0wa_		281	Cystic fibrosis transmembrane conductance regulato	88.56
d1jj7a_		251	Peptide transporter Tap1, C-terminal ABC domain {H	88.52
d3b60a1		253	Multidrug resistance ABC transporter MsbA, C-termi	88.44
d1rz3a_		198	Hypothetical protein rbstp0775 {Bacillus stearothe	88.39
d2pmka1		241	Haemolysin B ATP-binding protein {Escherichia coli	88.34
d1v5wa_		258	Meiotic recombination protein DMC1/LIM15 homolog {	88.26
d1gvnb_		273	Plasmid maintenance system epsilon/zeta, toxin zet	88.24
d1zina1		182	Adenylate kinase {Bacillus stearothermophilus [Tax	88.22
d1s96a_		205	Guanylate kinase {Escherichia coli [TaxId: 562]}	87.94
d2i1qa2		258	DNA repair protein Rad51, catalytic domain {Archae	87.86
d1ye8a1		178	Hypothetical kinase-like protein Aq_1292 {Aquifex	87.78
d2hyda1		255	Putative multidrug export ATP-binding/permease pro	87.72
d2cdna1		181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	87.5
d1ixsb2		239	Holliday junction helicase RuvB {Thermus thermophi	87.11
d1d2na_		246	Hexamerization domain of N-ethylmalemide-sensitive	87.02
d1um8a_		364	ClpX {Helicobacter pylori [TaxId: 210]}	86.95
d1yj5a2		172	5' polynucleotide kinase-3' phosphatase, C-termina	86.85
d1sxja2		253	Replication factor C1 {Baker's yeast (Saccharomyce	86.64
d1l2ta_		230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	86.52
d1ckea_		225	CMP kinase {Escherichia coli [TaxId: 562]}	86.42
d1mv5a_		242	Multidrug resistance ABC transporter LmrA, C-termi	86.19
d2ak3a1		189	Adenylate kinase {Cow (Bos taurus), mitochondrial	86.11
d1nksa_		194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	86.05
d1m8pa3		183	ATP sulfurylase C-terminal domain {Fungus (Penicil	85.84
d1akya1		180	Adenylate kinase {Baker's yeast (Saccharomyces cer	85.75
d2fnaa2		283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	85.58
d2awna2		232	Maltose transport protein MalK, N-terminal domain	85.45
d1gkya_		186	Guanylate kinase {Baker's yeast (Saccharomyces cer	85.38
d1br2a2		710	Myosin S1, motor domain {Chicken (Gallus gallus),	85.32
d1q3ta_		223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	85.2
d1e6ca_		170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	85.15
d3dhwc1		240	Methionine import ATP-binding protein MetN {Escher	85.11
d1g2912		240	Maltose transport protein MalK, N-terminal domain	84.74
d1g8pa_		333	ATPase subunit of magnesium chelatase, BchI {Rhodo	84.72
d1nlfa_		274	Hexameric replicative helicase repA {Escherichia c	84.72
d1uj2a_		213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	84.4
d1lkxa_		684	Myosin S1, motor domain {Dictyostelium discoideum,	83.89
d2mysa2		794	Myosin S1, motor domain {Chicken (Gallus gallus),	83.7
d1lvga_		190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	83.69
d1np6a_		170	Molybdopterin-guanine dinucleotide biosynthesis pr	83.67
d1v43a3		239	Hypothetical protein PH0022, N-terminal domain {Py	83.22
d1viaa_		161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	83.21
d1kgda_		178	Guanylate kinase-like domain of Cask {Human (Homo	82.53
d1w7ja2		730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.5
d4tmka_		210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	82.34
d1x6va3		195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	82.28
d1lv7a_		256	AAA domain of cell division protein FtsH {Escheric	82.25
d3d31a2		229	Sulfate/molybdate ABC transporter, ATP-binding pro	82.18
d1c4oa1		408	Nucleotide excision repair enzyme UvrB {Thermus th	82.17
d1b0ua_		258	ATP-binding subunit of the histidine permease {Sal	80.95
d1w5sa2		287	CDC6-like protein APE0152, N-terminal domain {Aero	80.42
d1ji0a_		240	Branched chain aminoacid ABC transporter {Thermoto	80.04

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=2.2e-40  Score=272.35  Aligned_cols=293  Identities=18%  Similarity=0.144  Sum_probs=207.0

Q ss_pred             HHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf             99819939999238985240298999999999703996099963048999999999999995994464542366303544
Q 001817          309 AISENQVVVVSGETGCGKTTQLPQYILESETEAARGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMK  388 (1009)
Q Consensus       309 ~i~~~~~vII~apTGSGKTt~~p~~ile~~~~~~~~~~~~Iiv~~P~R~la~qva~rv~~e~g~~~g~~vGy~ir~e~~~  388 (1009)
                      ++.+++++++.||||||||+++.+++++.....  +  .++++++|+|+||.|++++++...    ....+.  ..+...
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--~--~~~lvi~Ptr~La~q~~~~l~~~~----~~~~~~--~~~~~~   74 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--G--LRTLILAPTRVVAAEMEEALRGLP----IRYQTP--AIRAEH   74 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--T--CCEEEEESSHHHHHHHHHHTTTSC----CBCCC---------
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC--C--CEEEEECCHHHHHHHHHHHHHCCC----CCEEEE--EEEECC
T ss_conf             864699499997999978799999999998726--9--989998238999999999985487----521113--785012


Q ss_pred             CCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHCCC
Q ss_conf             89937999802999999803989999318999088767776028999999875449777199832578778897230999
Q 001817          389 GRDTRLMFCTTGILLRRLLVDRSLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLNAELFSSYFGGA  468 (1009)
Q Consensus       389 ~~~t~Iiv~T~g~Ll~~L~~~~~l~~is~IIIDEvHeR~~~~d~ll~llk~ll~~~~~lkiIlmSATl~~~~l~~yf~~~  468 (1009)
                      ...+.++++|++.+...+..+..+.++++||+||+|+...........++.+. .+++.++++||||++...        
T Consensus        75 ~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~-~~~~~~~v~~SAT~~~~~--------  145 (305)
T d2bmfa2          75 TGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRV-EMGEAAGIFMTATPPGSR--------  145 (305)
T ss_dssp             -CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTCC--------
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCE--------
T ss_conf             57653013774899999845853154008985301112520578889999841-665313899415787643--------


Q ss_pred             CEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             92136984014056751548888542057666555201345788899999998645547999999999721100113322
Q 001817          469 PMLHIPGFTYPVRAYFLENILEMTRYRLNTYNQIDDYGQEKSWKMQKQALALRKRKSSIASAVEDALEAADFREYSVQTQ  548 (1009)
Q Consensus       469 pvi~i~gr~~pv~~~yl~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~  548 (1009)
                        ........|+......               +....                                          
T Consensus       146 --~~~~~~~~~~~~~~~~---------------~~~~~------------------------------------------  166 (305)
T d2bmfa2         146 --DPFPQSNAPIMDEERE---------------IPERS------------------------------------------  166 (305)
T ss_dssp             --CSSCCCSSCEEEEECC---------------CCCSC------------------------------------------
T ss_pred             --EEECCCCCCCEEEEEE---------------CCHHH------------------------------------------
T ss_conf             --3402347861279986---------------15888------------------------------------------


Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHCC
Q ss_conf             00246899986622399999999861599969999188758999999998299999999729998049999888986319
Q 001817          549 QSLSCWNPDSIGFNLIEHVLCHIVKKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMASSEQRLIFD  628 (1009)
Q Consensus       549 ~~l~~~~~~~~~~~li~~ll~~i~~~~~~g~iLVFl~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lHs~l~~~er~~v~~  628 (1009)
                              ....       ...  .....+++||||+++++++.++..|...       ++.+..+||++....+.    
T Consensus       167 --------~~~~-------~~~--~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~l~~~~~~~~~~----  218 (305)
T d2bmfa2         167 --------WNSG-------HEW--VTDFKGKTVWFVPSIKAGNDIAACLRKN-------GKKVIQLSRKTFDSEYI----  218 (305)
T ss_dssp             --------CSSC-------CHH--HHSSCSCEEEECSCHHHHHHHHHHHHHH-------TCCCEECCTTCHHHHGG----
T ss_pred             --------HHHH-------HHH--HHHHCCCEEEEECCHHHHHHHHHHHHHC-------CCCEEEECCCCHHHHHH----
T ss_conf             --------9999-------999--9960799899963099999999999867-------99899957838477775----


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEE-EEC
Q ss_conf             999996189996472001568897559994798864--11357899786664123797699550003998999079-922
Q 001817          629 KPEDGVRKIVLATNMAETSITINDVVFVIDCGKAKE--TSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECY-HLY  705 (1009)
Q Consensus       629 ~f~~G~~kVIvATniae~GIdIp~V~~VId~g~~k~--~~yd~~~~~~~l~~~~iS~a~~~QR~GRAGR~~~G~cy-~L~  705 (1009)
                      .+++|.+++++||+++++|+|+ ++..|||+|....  ..||+.+....+...++|.++|.||+|||||.+.|..+ .+|
T Consensus       219 ~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~  297 (305)
T d2bmfa2         219 KTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY  297 (305)
T ss_dssp             GGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEE
T ss_pred             HHHCCCHHHHHHHHHHHHCCCC-CCCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEE
T ss_conf             4310001135556788725788-840899758741465733898763880445699889832411868289992699998


Q ss_pred             CHH
Q ss_conf             521
Q 001817          706 PRY  708 (1009)
Q Consensus       706 t~~  708 (1009)
                      ...
T Consensus       298 ~~~  300 (305)
T d2bmfa2         298 MGE  300 (305)
T ss_dssp             CSC
T ss_pred             CCC
T ss_conf             998

PyMOL of d2bmfa2

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}	Back information, alignment and structure

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}	Back information, alignment and structure

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}	Back information, alignment and structure

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}	Back information, alignment and structure

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}	Back information, alignment and structure

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}	Back information, alignment and structure

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}	Back information, alignment and structure

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}	Back information, alignment and structure

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}	Back information, alignment and structure

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}	Back information, alignment and structure