Citrus Sinensis ID: 001827

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------101

MQVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINLGGDKDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVSTERDLVKELKRMSDRLTGLDKHPDEELSQDEANLIFGRLELDFSLDAQVPVLQTPAPCSTRPTRSRRKAKRDETSSDEEDSPTSAQYVVPSNPGSISTRSERASKTAALTKMTASIIPTKIDEDDNEEEESSEVTSEEDSDESD

cHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc

cHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHccccHcHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHcccHcccccccccHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHcccccccccccccccccccccccccccccc

MQVIAKILDESRTSYATHNRKLKDlravrskspstaqFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIImrlpddtevsDEVWDEVIECMKVKVGDKVSVIRTFAVRSLsrfvndsdnsDILDLLLEVlpleqnadVRKTIVLslppsnatsqaIIDCTLDVSESVRKAAYCVLankfplqslsiKHRTMILKRGLADRSEAVSKECLKLMKDHWLakhcngnpiellKYLDVETYELVGESVMAALLKEEYissadvetegdsshcTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLlhrpldyevdddgnkvvigdginlggdkdWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAksfhliqgkpaeSAELLHSLLlpgakhvhLDVQRVAIRCLGlfgllenkpseELVKQLRLSFvkgcptvsIMAGKALIDLgmwhgpqevdkamgqkdisfqprndkmtsspinlsetdgdLNVELLDLLYAGIvasdrgkysgdeneSIEAVIGEGFAKVLLLsekypsipaSLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPAlrsmwpgingnaggsSLVVSNKRKRAVQASKFLLQMMQAplyaketevedengignmpetsdvseqsslecgeEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVSTERDLVKELKRMSDrltgldkhpdeelsqDEANLIFGRleldfsldaqvpvlqtpapcstrptrsrrkakrdetssdeedsptsaqyvvpsnpgsistrseRASKTAALTKMTAsiiptkideddneeeessevtseedsdesd

MQVIAkildesrtsyathnrklkdlravrskspstaqfssaffktltplFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIimrlpddtEVSDEVWDEVIECmkvkvgdkvsvIRTFAVrslsrfvndsdnSDILDLLLEVLPLEQNADVRKTIVLSlppsnatsqaIIDCTLDVSESVRKAAYCVLAnkfplqslsikhRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRpldyevdddgnKVVIGDginlggdkdWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVSTERDLVKELKRMSDRltgldkhpdeelSQDEANLIFGRLELDFSLDAQVPvlqtpapcstrptrsrrkakrdetssdeedsptsaqyvvpsnpgsistrseraSKTAALTkmtasiiptkideddneeeessevtseedsdesd

MQVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNdefledflkfllVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVndsdnsdildlllevlplEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINLGGDKDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKpaesaellhslllpGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVSTERDLVKELKRMSDRLTGLDKHPDEELSQDEANLIFGRLELDFSLDAQVPVLQTPAPCSTRPTRSRRKAKRdetssdeedsPTSAQYVVPSNPGSISTRSERASKTAALTKMTASIIPTKIdeddneeeessevtseedsdesd

**************************************SSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISSADV******SHCTQRIQLMEAEVALYWKTACRHLQM**************TEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINLGGDKDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHG**********************************DLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVV*******VQASKFLLQMMQA********************************GEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVST*******************************NLIFGRLELDFSLDAQVPVL********************************************************************************************

*QVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINLGGDKDWADAVSRLARKVHAA*****************************MHSLAVTGLLLENAKSF*******AESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAM******************************ELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGN************KRAVQASKFLLQMMQAPLYAKETE*************SDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVL***************RLLNHIF******RDLVKELKRMSD**********************************************************************************************************************************

MQVIAKILDESRTSYATHNRKLKDLR*********AQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISS***********CTQRIQLMEAEVALYWKTACRHLQMEA********ATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINLGGDKDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPE***********CGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVSTERDLVKELKRMSDRLTGLDKHPDEELSQDEANLIFGRLELDFSLDAQVPVLQTPA***************************************************ALTKMTASIIPTKID**********************

MQVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKEEYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINLGGDKDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMG**********************TDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAK***********************SLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVSTERDLVKELKRMSDRLTGLD*HPDEELSQDEANLIFGRLEL*******************************************************************************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1009	2.2.26 [Sep-21-2011]
Q9YHB5		1034	Condensin complex subunit	N/A	no	0.706	0.689	0.244	4e-46
Q9BPX3		1015	Condensin complex subunit	yes	no	0.677	0.673	0.244	3e-45
Q10429		875	Condensin complex subunit	yes	no	0.240	0.277	0.298	8e-24
Q06680		1035	Condensin complex subunit	yes	no	0.262	0.256	0.237	3e-13

>sp\|Q9YHB5\|CND3_XENLA Condensin complex subunit 3 OS=Xenopus laevis GN=ncapg PE=1 SV=1	Back alignment and function desciption

 Score =  187 bits (475), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 202/826 (24%), Positives = 362/826 (43%), Gaps = 113/826 (13%)

Query: 4   IAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVV 63
           I +  D S+ ++  H + +  LRA  +K+   + F   F   L     V RR  + ERV+
Sbjct: 10  IKEAFDLSQKAHQNHAKLVSSLRAAYNKTEDKSIFLEEFIHFLKFPLIVYRREPAVERVM 69

Query: 64  RFVSAFAATNNDEF-------------LEDFLKFLLVAAMAANKTARFRACQIISEIIMR 110
            FV+ F  + ++               +     FLL +  A++   RFR CQ+I+++++ 
Sbjct: 70  DFVAKFVTSFHNSGGENEEEADEENSPVNCLFNFLLQSHGASSMAVRFRVCQLINKLLVN 129

Query: 111 LPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD-NSDILDLLLEVLP 169
           LP++ ++ D+++D++ + M +++ D+V  +R  AV +L+R  + SD +  + +  + +L 
Sbjct: 130 LPENAQIDDDLFDKIHDAMLIRLKDRVPNVRIQAVLALARLQDPSDPDCPVSNAYVHLLE 189

Query: 170 LEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTM 229
            + N +VR+ ++  + PS  +   I+  T+DV E VRK AY VL+ K  +++L+I  R  
Sbjct: 190 NDSNPEVRRAVLTCIAPSAKSLPKIVGRTMDVKEPVRKLAYQVLSEKVHIRALTIAQRVK 249

Query: 230 ILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKE 289
           +L++GL DRS AV     K +   WL ++  G+ ++LL  LDVE    V  S + AL   
Sbjct: 250 LLQQGLNDRSAAVKDVIQKKLIQAWL-QYSEGDVLDLLHRLDVENSPEVSLSALNALFSV 308

Query: 290 EYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAV 349
             +       +         ++ +  E  LYW+  C HL+ + + +G  A   +  E AV
Sbjct: 309 SPVGELVQNCKNLDERKLIPVETLTPENVLYWRALCEHLKSKGD-EGEAALENILPEPAV 367

Query: 350 YAAEASDTNDLLERILPATVSDY-VDLVKTHIDAGANYRFASRQLLLLGEMLDFSDATIR 408
           YA   S       + LP    D   D+  T I+      F  +QL+L    LD S+   R
Sbjct: 368 YARYLSS----YLQTLPVLSEDQRADM--TKIEDLMTKEFIGQQLILTIGCLDTSEEGGR 421

Query: 409 KVASAFVQDLL---HRP----------LDYEVDDDGNKV-----VIGD----GINLGGDK 446
           K   A +Q++L   + P          L + + DD  ++     +I +     + +   K
Sbjct: 422 KRLLAVLQEILVMQNTPTSLISSLAELLLFVLKDDDKRIQTVAEIISELREPIVTVDNPK 481

Query: 447 D----------WADAVSRL------------------ARKVHAATGEFEEIMTGAVKELA 478
           D           AD   +L                  A ++     E E + T  +KE  
Sbjct: 482 DAAQSRKLQLKLADVKVQLIEAKQALEDSLTNEDYSRASELKEKVKELESLKTQLIKEAE 541

Query: 479 LP----CRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVH 534
            P     R    D    +  L +   LL   K   L +G      E+  SL+LPG  +VH
Sbjct: 542 EPEMKEIRVEKNDPETLLKCLIMCNELL---KHLSLSKGLGGTLNEICESLILPGITNVH 598

Query: 535 LDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHG---- 590
             V+ +A+ C+G   L     + + +  L          V   A  A+ D+ +  G    
Sbjct: 599 PSVRNMAVLCIGCCALQNKDFARQHLPLLLQILQLDEVKVKNSALNAVFDMLLLFGMDIL 658

Query: 591 ---PQEVDKAM------GQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVAS 641
              P   D +         +DIS Q +   +  +  N    +    V  +  L++G + S
Sbjct: 659 KSKPTNPDDSQCKAQENADEDISEQEKPGSVDENLTNEEVQEETATVNGILHLFSGFLDS 718

Query: 642 DRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQR 701
           +  +        I     EG  K L+ S +       + + LL++LI L+++  +++  +
Sbjct: 719 EIAE--------IRTETAEGLVK-LMFSGRL------ISAKLLSRLILLWYNPVTEEDTK 763

Query: 702 LKQCLSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSS 747
           L+ CL +FF  +A    +++ C ++AF+P L++++     NA  SS
Sbjct: 764 LRHCLGVFFPIFAYSCRSNQECFAEAFLPTLQTLF-----NAPASS 804

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerase.
Xenopus laevis (taxid: 8355)

>sp\|Q9BPX3\|CND3_HUMAN Condensin complex subunit 3 OS=Homo sapiens GN=NCAPG PE=1 SV=1	Back alignment and function description

>sp\|Q10429\|CND3_SCHPO Condensin complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd3 PE=1 SV=1	Back alignment and function description

>sp\|Q06680\|CND3_YEAST Condensin complex subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCG1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1009
225466033		1036	PREDICTED: condensin complex subunit 3 [	0.993	0.967	0.683	0.0
356537898		1033	PREDICTED: condensin complex subunit 3-l	0.987	0.964	0.652	0.0
356569381		1096	PREDICTED: condensin complex subunit 3-l	0.993	0.914	0.646	0.0
30693126		1051	condensin complex subunit 3 [Arabidopsis	0.988	0.948	0.629	0.0
110741552		1051	chromosome condensation protein -like [A	0.988	0.948	0.628	0.0
357460847		1076	Condensin complex subunit [Medicago trun	0.986	0.924	0.590	0.0
9757973		1076	unnamed protein product [Arabidopsis tha	0.988	0.926	0.614	0.0
297801288		1050	EMB2656 [Arabidopsis lyrata subsp. lyrat	0.990	0.951	0.625	0.0
147807289		862	hypothetical protein VITISV_040123 [Viti	0.813	0.952	0.696	0.0
413953646		1048	hypothetical protein ZEAMMB73_105589 [Ze	0.981	0.944	0.544	0.0

>gi\|225466033\|ref\|XP_002267656.1\| PREDICTED: condensin complex subunit 3 [Vitis vinifera] gi\|297745068\|emb\|CBI38660.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1318 bits (3412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/1028 (68%), Positives = 828/1028 (80%), Gaps = 26/1028 (2%)

Query: 1    MQVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAE 60
            MQ IA++LDES  S A H RKLKDL  +RS S S++ F SAF KTL PLF   RRT+SAE
Sbjct: 12   MQKIARVLDESGASNAAHIRKLKDLSTLRSAS-SSSLFFSAFSKTLIPLFAFPRRTSSAE 70

Query: 61   RVVRFVSAFAAT--NNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVS 118
            R VRF++ FA+   +   FLE+F +FL+ AA AANKTARFRACQ+ISEIIMRLPDD EVS
Sbjct: 71   RTVRFIATFASKCDSTTAFLEEFFRFLVNAATAANKTARFRACQMISEIIMRLPDDAEVS 130

Query: 119  DEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQNADVRK 178
            +E+WDEVIECM+++VGDKV ++R  AVR+L+RF  DS+NSDILDL LE LPLE NA+VRK
Sbjct: 131  NELWDEVIECMRLRVGDKVPLVRALAVRALARFATDSENSDILDLFLEALPLEHNAEVRK 190

Query: 179  TIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRGLADR 238
             IVLSLPPSNATS AI+D TLDVSE VRKAAY VLANKFPLQSLSIK RT+IL+RGLADR
Sbjct: 191  MIVLSLPPSNATSVAILDHTLDVSEVVRKAAYYVLANKFPLQSLSIKVRTIILQRGLADR 250

Query: 239  SEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLK---------- 288
            S AV+KECLKL+KD WL K CNG+PIELLKYLDVETYELVGESVM  LLK          
Sbjct: 251  SAAVTKECLKLLKDEWLVKCCNGDPIELLKYLDVETYELVGESVMEVLLKAGAVQLQDDQ 310

Query: 289  --EEYISSADVETEGDSSHCTQRIQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTE 346
              +++I +   E EG+S HC  RI+LMEAEVALYWKT CR+LQM+A+ +GSDAAATMG E
Sbjct: 311  SIQQFIVATSNEIEGESGHCIPRIRLMEAEVALYWKTVCRNLQMKAQERGSDAAATMGAE 370

Query: 347  AAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFASRQLLLLGEMLDFSDAT 406
            AAVYAAEASD NDLLER+LPA VSDYV+LVK H+DAG+NY FASRQLLLLG MLDFSDAT
Sbjct: 371  AAVYAAEASDNNDLLERVLPAMVSDYVELVKAHLDAGSNYCFASRQLLLLGAMLDFSDAT 430

Query: 407  IRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINLGGDKDWADAVSRLARKVHAATGEF 466
             RKVAS FVQ+LL +P++YEVD+DGNKVV+GDG+NLGGD++WADAVS LARKVHAA GEF
Sbjct: 431  NRKVASGFVQELLRKPIEYEVDEDGNKVVMGDGVNLGGDREWADAVSGLARKVHAAAGEF 490

Query: 467  EEIMTGAVKELALPCRERTADFIQWMHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLL 526
            EE++ G V+ELA PCRERTADF+ WMH L+VTGLLLENAKSF  +QGK  E  ELL SLL
Sbjct: 491  EEVLLGVVEELAQPCRERTADFLHWMHCLSVTGLLLENAKSFRWMQGKSIEPDELLQSLL 550

Query: 527  LPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLG 586
            LPGAKHVHL VQRVA RCLGLFGLLE KPS ELVKQLR  F+KG  ++SI+A KALID+G
Sbjct: 551  LPGAKHVHLAVQRVATRCLGLFGLLERKPSVELVKQLRFCFIKGSSSISIVACKALIDIG 610

Query: 587  MWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGK- 645
            MWHGPQEVD+AMG +  S    N KMT SP+NL + + D NVELLDLLYAG+  +D  K 
Sbjct: 611  MWHGPQEVDRAMGLELSSLLHEN-KMTFSPVNLCDMNEDWNVELLDLLYAGLNVNDWIKS 669

Query: 646  YSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQC 705
               DENES++A++GEGFAK+LLLSE YP IPASLH L L+KLI LYFSNE+K+LQRLKQC
Sbjct: 670  VDMDENESVQAILGEGFAKILLLSENYPCIPASLHPLFLSKLIILYFSNETKELQRLKQC 729

Query: 706  LSIFFEHYASLSANHKRCLSKAFVPALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLL 765
            LS+FFEHY SLSA+HK+C+SK+F+P +RSMWPGIN  AGGS  +VSN RK AVQAS+F+L
Sbjct: 730  LSVFFEHYPSLSADHKKCISKSFMPVMRSMWPGINTRAGGSPFMVSNVRKLAVQASRFML 789

Query: 766  QMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSL--ECGEEGLAIRIAVEVLSIHMKKT 823
            QMMQAPLYAKETE ++EN    +PE  D   + SL  ECGEEGLAIRIA EV+S H KKT
Sbjct: 790  QMMQAPLYAKETEKQNENQNNELPEVLDGFSEPSLDFECGEEGLAIRIAAEVVSFHAKKT 849

Query: 824  PAERSFVSALCRILVLIQFRLSEQGAIKLMRRLLNHIFESVSTERDLVKELKRMSDRLTG 883
            PA++S+VSALCR+LVL+ FRLSEQGAIKLMRRLLN + ES   ER++VKELKRM++RL  
Sbjct: 850  PAQKSYVSALCRVLVLLHFRLSEQGAIKLMRRLLNRVAESAFAEREVVKELKRMAERLKA 909

Query: 884  LDKHPDEELSQDEANLIFGRLELD--FSLDAQVPVLQTPAPCSTRPTRSRRKAKRDETSS 941
            +D+ PD+ELSQ++AN I GRLELD  F +D  + +  TP   S+RP R+R+  +  E+SS
Sbjct: 910  IDREPDQELSQEQANCILGRLELDLNFDVDDSMEIQPTPVSRSSRPARTRQGVRNQESSS 969

Query: 942  DEEDSPTSAQYVVPSNPGSISTRSERASKTAALTKMTASIIPTKIDEDDNEEEESSEVTS 1001
            +EE SPTS    VP   G+I+TRS+RASK AALTKMTA+       EDD  EE+ S VTS
Sbjct: 970  EEELSPTS---FVPQVTGTINTRSQRASKIAALTKMTANRAVRISKEDD--EEQGSAVTS 1024

Query: 1002 EEDSDESD 1009
            +EDSDESD
Sbjct: 1025 QEDSDESD 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356537898\|ref\|XP_003537443.1\| PREDICTED: condensin complex subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356569381\|ref\|XP_003552880.1\| PREDICTED: condensin complex subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|30693126\|ref\|NP_198579.2\| condensin complex subunit 3 [Arabidopsis thaliana] gi\|332006829\|gb\|AED94212.1\| condensin complex subunit 3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110741552\|dbj\|BAE98725.1\| chromosome condensation protein -like [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357460847\|ref\|XP_003600705.1\| Condensin complex subunit [Medicago truncatula] gi\|355489753\|gb\|AES70956.1\| Condensin complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|9757973\|dbj\|BAB08309.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297801288\|ref\|XP_002868528.1\| EMB2656 [Arabidopsis lyrata subsp. lyrata] gi\|297314364\|gb\|EFH44787.1\| EMB2656 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|147807289\|emb\|CAN73007.1\| hypothetical protein VITISV_040123 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|413953646\|gb\|AFW86295.1\| hypothetical protein ZEAMMB73_105589 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1009
TAIR\|locus:2151764		1051	EMB2656 "EMBRYO DEFECTIVE 2656	0.876	0.841	0.606	2.1e-299
UNIPROTKB\|F1S5C5		1014	NCAPG "Uncharacterized protein	0.371	0.369	0.289	1.5e-44
RGD\|1562646		1003	Ncapg "non-SMC condensin I com	0.385	0.387	0.282	4.3e-43
UNIPROTKB\|E2R2I9		1002	NCAPG "Uncharacterized protein	0.382	0.385	0.281	7e-43
UNIPROTKB\|F6XD78		1079	NCAPG "Uncharacterized protein	0.382	0.357	0.276	6.9e-40
UNIPROTKB\|F1MUI7		1018	NCAPG "Uncharacterized protein	0.320	0.317	0.314	4.3e-38
UNIPROTKB\|Q9BPX3		1015	NCAPG "Condensin complex subun	0.382	0.380	0.278	4.5e-35
UNIPROTKB\|E1C181		1028	NCAPG "Uncharacterized protein	0.255	0.250	0.324	4.8e-34
ZFIN\|ZDB-GENE-041111-282		1003	ncapg "non-SMC condensin I com	0.380	0.382	0.263	4.3e-29
DICTYBASE\|DDB_G0281419		1536	ncapGa "putative non-SMC conde	0.192	0.126	0.294	5.8e-20

TAIR\|locus:2151764 EMB2656 "EMBRYO DEFECTIVE 2656" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2682 (949.2 bits), Expect = 2.1e-299, Sum P(2) = 2.1e-299
 Identities = 550/907 (60%), Positives = 665/907 (73%)

Query:    89 AMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSL 148
             ++AAN+ ARFRACQIISEII+RLPD+ EV+DE+WD+VI+CM ++V DKV VIRTFAVRSL
Sbjct:   126 SVAANRNARFRACQIISEIILRLPDEVEVADELWDDVIDCMMLRVRDKVPVIRTFAVRSL 185

Query:   149 SRFVXXXXXXXXXXXXXXXXXXEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKA 208
             SRFV                  EQN +VRKTIVLSLPPSNAT+QAIIDCTLDV+ESVRKA
Sbjct:   186 SRFVNDPENSDILDLLLEVLPLEQNPEVRKTIVLSLPPSNATTQAIIDCTLDVNESVRKA 245

Query:   209 AYCVLANKFPLQSLSIKHRTMILKRGLADRSEAVSKECLKLMKDHWLAKHCNGNPIELLK 268
             AY VLANK PLQSLSIK RT IL+RGLADR+  VS ECLKLMK+ WLA +C G+PI  LK
Sbjct:   246 AYSVLANKVPLQSLSIKLRTTILQRGLADRAVNVSTECLKLMKEQWLANYCEGDPITFLK 305

Query:   269 YLDVETYELVGESVMAALLKE------------EYISSADVETEGDSSHCTQRIQLMEAE 316
             YLDVETYE V ES +  LL E            +YI SAD ET  +S+     IQLME E
Sbjct:   306 YLDVETYESVAESALEVLLSEGLIMPSDDKSIQQYILSADGETRDESTCSAPSIQLMEPE 365

Query:   317 VALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLV 376
             +ALYW+  CR +   A+AKGSDAA  MG EAAVYAAEASD NDLLERILPATVSDYVDLV
Sbjct:   366 IALYWRIICRKVHQSAQAKGSDAATAMGAEAAVYAAEASDANDLLERILPATVSDYVDLV 425

Query:   377 KTHIDAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVI 436
             K HI+AG N+ FASRQLLLLG MLDFSDA + K  S+FVQ+LL RP + E+D+DGN +VI
Sbjct:   426 KAHIEAGPNHHFASRQLLLLGTMLDFSDAMLHKTVSSFVQELLRRPFEQELDEDGNSIVI 485

Query:   437 GDGINLGGDKDWADAVSRLARKVHAATGEFEEIMTGAVKELALPCRERTADFIQWMHSLA 496
             GDGINLGGDKDWA+AVS+LA+KVHAA GE+EE++   V+E+A PCRERTADF+QWMH L+
Sbjct:   486 GDGINLGGDKDWAEAVSKLAKKVHAAPGEYEEVILVVVEEVARPCRERTADFLQWMHMLS 545

Query:   497 VTGLLLENAKSFHLIQGKXXXXXXXXXXXXXXGAKHVHLDVQRVAIRCLGLFGLLENKPS 556
             +T LLLEN KS H +QGK              GAKH HLDVQR+AI+ LGLFGLLE KPS
Sbjct:   546 LTSLLLENGKSLHSLQGKAIEPEEILHALLLPGAKHTHLDVQRIAIKGLGLFGLLEKKPS 605

Query:   557 EELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSP 616
             EELV+QLR +F +  P +SIMA KAL+DLGMWH P EVDKAMGQ D+  Q  +D +  +P
Sbjct:   606 EELVRQLRAAFCRSPPPISIMACKALVDLGMWHSPTEVDKAMGQ-DLLSQFEDDSIDFAP 664

Query:   617 INLSETDGDLNVELLDLLYAGIVASD-RGKYSGDENESIEAVIGEGFAKVLLLSEKYPSI 675
             I+LS  + D+N ++LDLLYAG+ + D R      ENES++A +GEGFAK+LLL EKYP++
Sbjct:   665 IDLSNAEEDMNFKMLDLLYAGLESDDWRASTESSENESVKATVGEGFAKLLLLGEKYPNL 724

Query:   676 PASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPALRSM 735
             PAS +  +L KLI LYFS ESK+  R KQCLS+FFEHYASLS  HK  +SKAFVP +RSM
Sbjct:   725 PASFYPFVLGKLIALYFSEESKEQLRFKQCLSVFFEHYASLSEKHKGYVSKAFVPLVRSM 784

Query:   736 WPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVS 795
             WPGI+GN   SS VVSN+RKRAVQ S+F+LQMMQ PLY KET  E E+ +   PE S   
Sbjct:   785 WPGIDGNTKSSSYVVSNQRKRAVQVSRFILQMMQTPLYKKETRGEPESQVNKSPEDSI-- 842

Query:   796 EQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIKLMRR 855
              Q  L C EEGLAIRIA+E+LS   KKT  E+++V+ALC+ILVL+  + SEQ   KL+++
Sbjct:   843 -QHPLNCTEEGLAIRIAIEMLSFKEKKTAHEKAYVAALCKILVLLHLKPSEQNVTKLLKK 901

Query:   856 LLNHIFESVSTERDLVKELKRMSDRLTGLDKHPDEELSQDEANLIFGRLELDFSLDAQ-- 913
             LL+ + +SV +E+DL+KE+K +   L  LD  P EEL+QD+AN IF  L + ++L+    
Sbjct:   902 LLSLLADSVRSEKDLLKEVKPVLQHLKSLDACPSEELTQDQANSIFEILGVSYNLEITET 961

Query:   914 VPVLQTPAPCSTRPTRSRRKAKRXXXXXXXXXXPTSAQYVVPSNPGSISTRSERASKTAA 973
               V QTPAPCST+P RSRR+A R            S     PS P ++ TRS RASK AA
Sbjct:   962 TTVPQTPAPCSTKPARSRRRA-RIEETSSDEEEVASPP---PSAPNTLMTRSHRASKAAA 1017

Query:   974 LTKMTAS 980
             L K+ AS
Sbjct:  1018 LAKIMAS 1024

GO:0005634 "nucleus" evidence=ISM

GO:0007076 "mitotic chromosome condensation" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

UNIPROTKB\|F1S5C5 NCAPG "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1562646 Ncapg "non-SMC condensin I complex, subunit G" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R2I9 NCAPG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6XD78 NCAPG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUI7 NCAPG "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BPX3 NCAPG "Condensin complex subunit 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C181 NCAPG "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041111-282 ncapg "non-SMC condensin I complex, subunit G" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0281419 ncapGa "putative non-SMC condensin I complex, subunit Ga" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030858001	SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (936 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1009
pfam12719		302	pfam12719, Cnd3, Nuclear condensing complex subuni	6e-52
COG5218		885	COG5218, YCG1, Chromosome condensation complex Con	2e-26

>gnl\|CDD\|221732 pfam12719, Cnd3, Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

 Score =  184 bits (469), Expect = 6e-52
 Identities = 91/361 (25%), Positives = 152/361 (42%), Gaps = 59/361 (16%)

Query: 492 MHSLAVTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLL 551
           +  L +   +LEN     L      ES  LL +L+LP  +    D++ + ++CLGL  LL
Sbjct: 1   LKCLTILQYMLENVSVGSLSPNISLES--LLDTLILPAVRSHDADIRELGLKCLGLCCLL 58

Query: 552 ENKPSEELVKQLRLSFVKGCPTVSIMAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDK 611
           +   +EE +  L   F KG   + I A +AL DL + HG    D    +           
Sbjct: 59  DKDLAEENLPLLLQCFSKGDEELKITALRALFDLLLLHGVDLFDSEGDE----------- 107

Query: 612 MTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEK 671
                     T+   +V LL +LY         K+   E+  ++A+  EG  K LLL+ +
Sbjct: 108 --------DSTEDVDSVSLLKILY---------KFLDSEDPEVQAIAAEGLCK-LLLAGR 149

Query: 672 YPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSANHKRCLSKAFVPA 731
               P      LL +L+ LYF+  +++  RL+QCLS+FF  YA  S  ++  L++AF+P 
Sbjct: 150 LTDEPD-----LLERLLLLYFNPNTEENPRLRQCLSVFFPVYAYSSPKNQELLAEAFLPT 204

Query: 732 LRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPET 791
           LR++    +      ++V         Q ++FL+          ET              
Sbjct: 205 LRTLLNAPDEFDSPLAMV------SPSQVAQFLVDWTDPRKLVNETN------------- 245

Query: 792 SDVSEQSSLECGEEGLAIRIAVEVLSIHMKKTPAERSFVSALCRILVLIQFRLSEQGAIK 851
               E+ +       LA+ I  E+L    KK   +++   AL ++ + +    S +    
Sbjct: 246 ----EEIAKAPVHLDLAVDILEEILKDPTKKKEEKKALCKALGKLYIPVLLSSSSKTLTL 301

Query: 852 L 852
           L
Sbjct: 302 L 302

The Cnd1-3 proteins are the three non-SMC (structural maintenance of chromosomes) proteins that go to make up the mitotic condensation complex along with the two SMC protein families, XCAP-C and XCAP-E, (or in the case of fission yeast, Cut3 and Cut14). The five-member complex seems to be conserved from yeasts to vertebrates. This domain is the C-terminal, cysteine-rich domain of Cnd3. The complex shuttles between the nucleus, during mitosis, and the cytoplasm during the rest of the cycle. Thus this family is made up of the C-termini of XCAP-Gs, Ycg1 and Ycs5 members. Length = 302

>gnl\|CDD\|227543 COG5218, YCG1, Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1009
KOG2025		892	consensus Chromosome condensation complex Condensi	100.0
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	100.0
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	100.0
PRK09687		280	putative lyase; Provisional	98.37
PRK09687		280	putative lyase; Provisional	98.35
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.16
PTZ00429		746	beta-adaptin; Provisional	97.98
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.8
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.77
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.69
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.51
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	97.38
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.37
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	97.28
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.16
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.14
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.08
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	96.92
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.82
TIGR02270		410	conserved hypothetical protein. Members are found	96.79
PTZ00429		746	beta-adaptin; Provisional	96.7
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	96.24
KOG2259		823	consensus Uncharacterized conserved protein [Funct	95.9
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.86
KOG2025		892	consensus Chromosome condensation complex Condensi	95.79
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.78
TIGR02270		410	conserved hypothetical protein. Members are found	95.59
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	95.51
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.25
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.13
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	95.12
COG1413		335	FOG: HEAT repeat [Energy production and conversion	94.94
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	94.85
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	94.77
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	94.58
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.4
KOG1824		1233	consensus TATA-binding protein-interacting protein	93.84
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	93.77
KOG1242		569	consensus Protein containing adaptin N-terminal re	93.59
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	93.4
KOG2062		929	consensus 26S proteasome regulatory complex, subun	93.34
KOG0414		1251	consensus Chromosome condensation complex Condensi	93.2
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	93.2
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	93.04
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.95
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	92.63
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	92.37
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	92.18
COG5116		926	RPN2 26S proteasome regulatory complex component [	92.15
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	92.1
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	91.24
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	91.14
KOG0414		1251	consensus Chromosome condensation complex Condensi	91.0
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	90.99
KOG1824		1233	consensus TATA-binding protein-interacting protein	90.94
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	90.53
PF05004		309	IFRD: Interferon-related developmental regulator (	90.19
KOG2213		460	consensus Apoptosis inhibitor 5/fibroblast growth	89.75
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	88.91
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	88.89
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	88.61
COG5098		1128	Chromosome condensation complex Condensin, subunit	88.37
smart00638		574	LPD_N Lipoprotein N-terminal Domain.	88.32
KOG1242		569	consensus Protein containing adaptin N-terminal re	88.27
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	87.13
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	86.93
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.58
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	86.39
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	86.37
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	86.29
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.05
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	85.57
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	85.3
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	85.15
KOG0212		675	consensus Uncharacterized conserved protein [Funct	85.11
KOG1243		690	consensus Protein kinase [General function predict	84.57
COG5537		740	IRR1 Cohesin [Cell division and chromosome partiti	82.27
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	81.63
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	81.62
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	81.51
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	81.43
KOG2259		823	consensus Uncharacterized conserved protein [Funct	81.26
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	80.26

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=5.7e-115  Score=991.19  Aligned_cols=716  Identities=22%  Similarity=0.280  Sum_probs=592.3

Q ss_pred             hHHHHHHHHHhhhhhhhHHHHHHHHHHHhhCCChhhHHHHHHHhhhhhhccccCchhhHHHHHHHHHHHhhc-----chH
Q 001827            2 QVIAKILDESRTSYATHNRKLKDLRAVRSKSPSTAQFSSAFFKTLTPLFTVQRRTASAERVVRFVSAFAATN-----NDE   76 (1009)
Q Consensus         2 ~~I~~iF~~aQ~s~~~H~k~~~~L~~l~~~~~~~~~F~~~F~~~l~~iL~~~k~~~~~dRvikFva~f~~~~-----~~~   76 (1009)
                      +++..||+++|++.++|  +.+.+.++.+.-. +..|.++|.+.++++|+++|+++.+|||++|+++|+.+.     +++
T Consensus         5 ~r~~~If~k~Q~s~agh--~~kl~~k~~em~t-~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~D   81 (892)
T KOG2025|consen    5 ERMQLIFNKIQQSDAGH--YSKLLAKVMEMLT-AHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEED   81 (892)
T ss_pred             HHHHHHHHHHHhhhcch--HHHHHHHHHHhhh-HhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhh
Confidence            46899999999999999  3344455554433 479999999999999999999999999999999999974     678


Q ss_pred             HHHHHHHHHHHHhccCCcchhHhHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhcccCCCC
Q 001827           77 FLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSD  156 (1009)
Q Consensus        77 f~~~ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~idedl~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~~~~  156 (1009)
                      |++.+|+||++|++||+|+||||+||+|+.++++.+   +|||++|+.|.++|+.|++||+|+||+|||.||+|||++++
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~---eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~  158 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA---EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK  158 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc---ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999766   79999999999999999999999999999999999998776


Q ss_pred             C--hHHHHHHHHhcCCCCCHHHHHHHHhhCCCCcccHHHHHHhhCCCChHHHHHHHHHHhccCCCCCCCHHHHHHHHHHh
Q 001827          157 N--SDILDLLLEVLPLEQNADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAAYCVLANKFPLQSLSIKHRTMILKRG  234 (1009)
Q Consensus       157 d--~~v~~~ll~~l~~D~s~eVRraaL~~i~~~~~tl~~il~R~rDv~~~VRr~ay~~L~~~v~~~~lsi~qR~~LL~~G  234 (1009)
                      |  +++++.|.++++||||+||||+||.||.+++.|+|+|++|+|||+..+||.+|+++.++++++++||++|+.||+||
T Consensus       159 dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~Llewg  238 (892)
T KOG2025|consen  159 DEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWG  238 (892)
T ss_pred             CCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh
Confidence            5  57999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhhhcCCCHHHHhhhcCcccchHHHHHHHHHHHhh-----hhcccccccccCCCCCcccc
Q 001827          235 LADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELVGESVMAALLKE-----EYISSADVETEGDSSHCTQR  309 (1009)
Q Consensus       235 L~Dr~~~Vr~a~~~~L~~~Wl~~~~~gdi~~LL~~LDV~~~~~~ae~~L~~lf~~-----~~~~~~~~~~e~~~~~~i~~  309 (1009)
                      |+||+.+||.||.++|...|++ ..+||++++|++|||.+++++|.+++++||+.     +.++.++          ...
T Consensus       239 LnDRe~sVk~A~~d~il~~Wl~-~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~~~k~f~----------~~~  307 (892)
T KOG2025|consen  239 LNDREFSVKGALVDAILSGWLR-FSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVGSCKNFD----------LIL  307 (892)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhh-hccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhhhccc----------chh
Confidence            9999999999999999999998 68999999999999999999999999999994     1222221          334


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcchHHHHHHhCchhHHHHHHHHHHH-------h--
Q 001827          310 IQLMEAEVALYWKTACRHLQMEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTH-------I--  380 (1009)
Q Consensus       310 ~~~lt~E~af~wR~~~~~l~~~~~~~g~da~~~~~~~~~v~~~~~~~~~e~Le~~LP~~~~~y~~~~~~~-------~--  380 (1009)
                      |+.+|||.||||+.+|-|+.      |                  .++.+.++.++|+. ..|++++..+       .  
T Consensus       308 ~~~~t~Eiaf~~~al~l~~~------~------------------~e~~e~le~i~pe~-~~~~d~l~~~i~~~~~~e~~  362 (892)
T KOG2025|consen  308 VEDLTPEIAFLWCALCLKSK------G------------------DEGTEFLELILPEP-VVLVDYLLRYIQSVYEVEEE  362 (892)
T ss_pred             hhcccHHHHHHHHHHHHHhh------c------------------chhhHHHHHhCCCH-HHHHHHHHHhhhhHHHHHHh
Confidence            89999999999999995543      2                  25678999999983 4444433221       1  


Q ss_pred             -------hhccchhhHHHHHHHHHhhccCCCHHhhHHHHHHHHHHhcCCCCCccCCCCCeeeecccccC-CCChhHHHHH
Q 001827          381 -------DAGANYRFASRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPLDYEVDDDGNKVVIGDGINL-GGDKDWADAV  452 (1009)
Q Consensus       381 -------~~~~~~~Fi~~QLL~ia~~~D~sDE~GRr~~~~ll~~lL~~p~~~~~~d~~~~~~i~~~i~~-~~e~d~~~~v  452 (1009)
                             ..+..++||++||+.|+..|||+||+|||+|++++++||+.+   .+|+.....+|.....+ ..+.||+..+
T Consensus       363 ~~~~~~~~~~~~~~fi~eqL~~i~~syD~sdE~gRkklL~vv~n~Lal~---tlp~slVs~~Ve~l~~i~s~endf~~~l  439 (892)
T KOG2025|consen  363 SGSKSYISNYMTQEFIIEQLFRIARSYDFSDEAGRKKLLSVVYNLLALN---TLPISLVSEVVEELMQIASLENDFTDDL  439 (892)
T ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHHhhcchHHHHH
Confidence                   124678999999999999999999999999999999999985   45665443333221111 2467999999


Q ss_pred             HHHHHHHhhchhh---------------------HHHHHhhHHHhh--ccc----c---ccc------chhhhHHHHHHH
Q 001827          453 SRLARKVHAATGE---------------------FEEIMTGAVKEL--ALP----C---RER------TADFIQWMHSLA  496 (1009)
Q Consensus       453 ~el~~~l~~~~~e---------------------~ee~~~~~~~el--~~~----~---~E~------~~d~~~~lrCL~  496 (1009)
                      .+++.++.....+                     .|+.+.  .++.  ..|    .   +++      ........+||+
T Consensus       440 ~EiI~eIr~~~n~ka~~rk~~~~na~~~~kn~~~~ee~~~--~q~~~~a~p~lr~nelnv~E~d~in~~~~ekn~~~cl~  517 (892)
T KOG2025|consen  440 NEIIGEIRKPKNAKASPRKKELKNAEIKVKNCLMLEECVC--KQVMKHARPLLRLNELNVEEIDLINLSSGEKNVEICLV  517 (892)
T ss_pred             HHHHHHHhcccccccChhhhhcccchhhhhhhhhhhhhhh--hhhhcccCcccccccCCCccccccccCchHHHHHHHHH
Confidence            9999888763111                     011110  0011  000    0   110      011123789999


Q ss_pred             HHHHHHhhccccccccCCCccHHHHHHhhhhcccCCCCHHHHHHHHHHHhhHHhcCCcchHHHHHHHHHHHhhCChhHHH
Q 001827          497 VTGLLLENAKSFHLIQGKPAESAELLHSLLLPGAKHVHLDVQRVAIRCLGLFGLLENKPSEELVKQLRLSFVKGCPTVSI  576 (1009)
Q Consensus       497 i~~~lLe~v~~~~~l~~~~~~l~~ll~sLIlPaV~~~~~~VR~~al~CLGL~cLldk~~a~~~~~ll~~~~~~~~~~vki  576 (1009)
                      .+++|||+++.+  + +.+..+.+++++||.|+|++.+|.||++|+.|||||||++.++|.+++.++.+|.++|+..+|+
T Consensus       518 ~~yylle~~~~s--l-~esl~mn~~~~sLi~pavrs~~l~iRelglKOGglccLln~dlA~en~~ill~c~~kg~v~LK~  594 (892)
T KOG2025|consen  518 GFYYLLERPHHS--L-IESLVMNMEANSLIFPAVRSLVLSIRELGLLCLGLCCLLNGDLAKENDDILLPCSQKGKVALKH  594 (892)
T ss_pred             HHHHHHhcccch--H-HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhhhhhhcchhhhhhcCcEEEEeeecCceEEEe
Confidence            999999999863  3 3467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCchhhhhcccCcCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHhhhcccCCCCCCCCchhHHH
Q 001827          577 MAGKALIDLGMWHGPQEVDKAMGQKDISFQPRNDKMTSSPINLSETDGDLNVELLDLLYAGIVASDRGKYSGDENESIEA  656 (1009)
Q Consensus       577 ~ALkaifDlll~hG~~~ld~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~~~llklL~~~L~~~~~~~~~~~e~~evq~  656 (1009)
                      +|+++|+|+++.||...+.                             .++..+++++++.|.+        ++.+|.|+
T Consensus       595 ~al~~l~D~fi~fg~e~fk-----------------------------~~~d~~lki~~~~L~~--------~~~~E~qt  637 (892)
T KOG2025|consen  595 RALDDLRDRFIAFGLERFK-----------------------------CTQDDHLKIYCSILFF--------ELFSEDQT  637 (892)
T ss_pred             ehHHHHHHHHHHhccccce-----------------------------echHHHHHHHHHHHcc--------ccchHHHH
Confidence            9999999999999974321                             1256789999999875        46799999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHhcCCCCcchhHHHHHHHhhhcccccCCH-------HHHHHHHHHhH
Q 001827          657 VIGEGFAKVLLLSEKYPSIPASLHSLLLAKLINLYFSNESKDLQRLKQCLSIFFEHYASLSA-------NHKRCLSKAFV  729 (1009)
Q Consensus       657 iaaEGlaKLLL~~~~~~~~~~~~~~~lLs~LvLlyFnP~t~~n~~LRQcLsvFFp~ya~ss~-------~nQ~~l~~aFl  729 (1009)
                      +++||+||+++.-. ++      +..++..|++.||.|.+..|+.+||.++||||+|+++-.       .++.+++++++
T Consensus       638 l~aea~cKlll~l~-~~------del~f~~l~l~yf~p~~~~n~alrqll~y~ipvy~fs~hen~~r~~tl~~dle~s~l  710 (892)
T KOG2025|consen  638 LLAEAFCKLLLVLP-CS------DELVFIDLSLYYFGPSKYANVALRQLLFYNIPVYLFSEHENDQRGKTLVKDLERSEL  710 (892)
T ss_pred             HHHHHHHHHHhhhh-cc------hHhhhhhhhhhhcccccchhHHHHHHHHHHHhhhcchhhhHHHhhhHHHHHHHHhhh
Confidence            99999999999542 22      478999999999999999999999999999999998754       45689999999


Q ss_pred             HHHHhhcccccCCCCCCccccchhhhhhHHHHHHHHHhhcccccccccccccccCCCCCCCCCcccccCccccchhhHHH
Q 001827          730 PALRSMWPGINGNAGGSSLVVSNKRKRAVQASKFLLQMMQAPLYAKETEVEDENGIGNMPETSDVSEQSSLECGEEGLAI  809 (1009)
Q Consensus       730 ptL~~l~~~~~~na~~ss~~~s~~~~~~~~v~~f~~~l~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~h~~LAi  809 (1009)
                      |+.+.+     ++++.+.+..++       +.+       +..++.+|++...++++..++    ..+  ...+|..||.
T Consensus       711 p~~~dl-----am~k~~l~~~~i-------~~~-------~~~lvd~tg~~~r~tq~~dd~----d~i--~~~vh~~lkk  765 (892)
T KOG2025|consen  711 PRCWDL-----AMTKKILFCCSI-------VAR-------KHGLVDSTGEVIRRTQEIDDG----DPI--SQEVHCDLKK  765 (892)
T ss_pred             hhhcch-----hhccccchHHHH-------HHH-------Hhhhhhcccchhccccccccc----cHH--HHHHHHHHHH
Confidence            999998     688877776664       222       334445555554555432222    233  3578999999


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHHHh
Q 001827          810 RIAVEVLSIHMKKTPAERSFVSALCRILV  838 (1009)
Q Consensus       810 ~i~~Eil~~~~~~~~~~~~y~~aL~k~l~  838 (1009)
                      +|++||+..|+  +|+.+.|.++|.+++.
T Consensus       766 ~I~n~i~t~~~--~~e~~~~~s~L~~L~~  792 (892)
T KOG2025|consen  766 DIENEILTSPC--SPEIRVYTSALSSLEL  792 (892)
T ss_pred             HHHHHhccCCC--ChhHHHHHHHHHhhcc
Confidence            99999999988  7999999999997763

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>smart00638 LPD_N Lipoprotein N-terminal Domain	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1009
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 86.1 bits (212), Expect = 4e-17
 Identities = 102/680 (15%), Positives = 213/680 (31%), Gaps = 190/680 (27%)

Query: 114 DTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDLLLEVLPLEQN 173
           D E  +          + +  D +SV           FV++ D  D+ D+   +L     
Sbjct: 8   DFETGE---------HQYQYKDILSVF-------EDAFVDNFDCKDVQDMPKSIL---SK 48

Query: 174 ADVRKTIVLSLPPSNATSQAIIDCTLDVSESVRKAA--------YCVLANKFPLQSL--S 223
            ++    ++    + + +  +    L   E + +          Y  L +    +    S
Sbjct: 49  EEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 224 IKHRTMILKRG-LADRSEAVSKECLKLMKDHWLAKHCNGNPIELLKYLDVETYELV---- 278
           +  R  I +R  L + ++  +K  +  ++ +   +         L  L      L+    
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-------LLELRPAKNVLIDGVL 159

Query: 279 --GESVMAALLKEEYISSADVETEGDS-------SHCTQRIQLMEAEVALYWKTACRHLQ 329
             G++ +A     +   S  V+ + D         +C     ++E    L ++       
Sbjct: 160 GSGKTWVAL----DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 330 MEAEAKGSDAAATMGTEAAVYAAEASDTNDLLERILPATVSDYVDLVKTHIDAGANYRFA 389
                  SD ++                   L R+L                    Y   
Sbjct: 216 ------RSDHSSN-------IKLRIHSIQAELRRLL----------------KSKPYE-- 244

Query: 390 SRQLLLLGEMLDFSDATIRKVASAFVQDLLHRPL----DYEVDDDGN----KVVIGDGIN 441
              LL+L   L+  +A   K  +AF  +L  + L      +V D  +      +  D  +
Sbjct: 245 -NCLLVL---LNVQNA---KAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 442 LGGDKDWADAVSRLARKVHAATGEF-EEIMTG---AVKELALPCRERTADFIQWMHSLAV 497
           +    D  +  S L + +     +   E++T     +  +A   R+  A +  W H    
Sbjct: 296 MTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH---- 349

Query: 498 TGLLLENAKSFHLIQG-----KPAESAELLHSL-LLPGAKHVHLDVQRVAIRCLGLFGLL 551
               +   K   +I+      +PAE  ++   L + P     H+    +++    ++  +
Sbjct: 350 ----VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSL----IWFDV 399

Query: 552 ENKPSEELVKQL-RLSFVKGCP---TVSIMAG---------------KALID-------L 585
                  +V +L + S V+  P   T+SI +                ++++D        
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 586 GMWH-GPQEVDK-------------AMGQK---------DISFQPRNDKMTSSPINLSET 622
                 P  +D+                ++         D  F  +  K+       + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--KIRHDSTAWNAS 517

Query: 623 DGDLNVELLDL-LYAGIVASDRGKYSGDENESIEAVIGEGFAKVLLLSEKYPSIPASLHS 681
              LN  L  L  Y   +  +  KY    N  ++ +      + L+ S KY  +   L  
Sbjct: 518 GSILNT-LQQLKFYKPYICDNDPKYERLVNAILDFL--PKIEENLICS-KYTDL---LRI 570

Query: 682 LLLAKLINLYFSNESKDLQR 701
            L+A+     F    K +QR
Sbjct: 571 ALMAE-DEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1009
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-04

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 11/128 (8%)

Query: 53  QRRTASAERVVRFVSAFAATNNDEFLEDFLKFLLVAAMAANKTARFRACQIISEIIMRLP 112
             R A+   + + V  F     +      +  +L  +   N   R      I+ +     
Sbjct: 456 AIREAATSNLKKLVEKFG---KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512

Query: 113 DDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVNDSDNSDILDL---LLEVLP 169
            D   +  +   V+        D V+ +R    +SL +     DNS +      +LE L 
Sbjct: 513 QDI-TTKHMLPTVLRMAG----DPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 567

Query: 170 LEQNADVR 177
            +Q+ DV+
Sbjct: 568 QDQDVDVK 575

PyMOL of d1b3ua_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1009
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.45
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.43
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.25
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.11
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.01
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.74
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.7
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.47
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.41
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.25
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.0
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.94
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.65
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	97.62
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	97.53
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.48
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.81
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.37
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.27
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.21
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.99
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.85
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.65
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	94.24
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.18
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	93.93
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	93.67
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	93.64
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	93.05
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.49
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	90.66

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.3e-09  Score=71.94  Aligned_cols=166  Identities=14%  Similarity=0.134  Sum_probs=109.7

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC---CCCC
Q ss_conf             9999998720689543376999999999409999767978899999999888079874599999999730208---9999
Q 001827           81 FLKFLLVAAMAANKTARFRACQIISEIIMRLPDDTEVSDEVWDEVIECMKVKVGDKVSVIRTFAVRSLSRFVN---DSDN  157 (1009)
Q Consensus        81 ll~~Ll~~~~akdk~VR~R~cqli~~ll~~l~~~~~ide~l~~~l~~~ll~Rl~DK~~~VR~qAv~aL~rlQ~---~~~d  157 (1009)
                      .+..|+....+.|..+|..+.+-+..+...+|.     +...+.+...+.+-+.|++ .||..++..|+++..   +++.
T Consensus        11 ~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~-----~~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~~~~   84 (588)
T d1b3ua_          11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGV-----ERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGGPEY   84 (588)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCH-----HHHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTSGGG
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCCHHH
T ss_conf             899999986699989999999999999998491-----7459999999999865868-9999999999999987487468


Q ss_pred             H-HHHHHHHHHCCCCCCHHHHHHHHHHCC-----CC----CCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCCCCCCHH-
Q ss_conf             4-799999986489999779999986079-----99----66579999750-789968999999998534898777999-
Q 001827          158 S-DILDLLLEVLPLEQNADVRKTIVLSLP-----PS----NATSQAIIDCT-LDVSESVRKAAYCVLANKFPLQSLSIK-  225 (1009)
Q Consensus       158 ~-~i~~~ll~~l~~D~s~eVRraaL~~i~-----~~----~~tl~~il~R~-rDv~~~VRr~ay~~L~~~i~~~~lsi~-  225 (1009)
                      . .++..+..++ .|+++.||.++..++.     .+    ...+..++.+. .+-...+|..|..-+..-.+  ..+.. 
T Consensus        85 ~~~ll~~l~~l~-~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~--~~~~~~  161 (588)
T d1b3ua_          85 VHCLLPPLESLA-TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP--RVSSAV  161 (588)
T ss_dssp             GGGGHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT--TSCHHH
T ss_pred             HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf             999999999980-69988999999999999998679888999999999998646314799999999999999--861899


Q ss_pred             --HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             --9999999830399888999999999999986
Q 001827          226 --HRTMILKRGLADRSEAVSKECLKLMKDHWLA  256 (1009)
Q Consensus       226 --qR~~LL~~GL~Dr~~~Vr~a~~~~L~~~Wl~  256 (1009)
                        .-..++..-++|.++.||+++...+ ..+.+
T Consensus       162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l-~~~~~  193 (588)
T d1b3ua_         162 KAELRQYFRNLCSDDTPMVRRAAASKL-GEFAK  193 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHH
T ss_conf             999999999985169989999999999-98998

PyMOL of d1b3ua_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure