Citrus Sinensis ID: 001833

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------101
MMALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
ccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHccccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
cccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHccccccccccccccccccccccccccHHccccccHHHccccEEEEccccHHHHHHHHHHHcccccccccccEccccccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccEEEcccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccEEcccccEEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
MMALDVVTsastvpasEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELnkrdlshsegLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGilplasldlSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERadaassprEKEMKYFSKrkslgsqpleplqsfycpitrdvmvdpvetssgqtfeRSAIEKWFsdgnnlcpltmtvldtsilrpnkTLRQSIEEWKDRNTMITiasmkpklvsTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVkdsndtkerlangdDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTdhhkasllegnvlgpllhlvsrgdIQMKKVAVKALRNlssvpqnglqmikegavGPLVDLLLhhsssssslREETATAIMHLAVSTmyqessqtpvtllESDKEIFMLFSLINLTGPNVQQRILQTFNALcrspsagnikttltqcsaIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIlsklpevpqfTQWLLDAGALPIVLNFLkngrqndpnrFQVVENAVGALrrftaptnLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARfsknslglsrpipkrkgfwcfspppeigcqvhgglcgieSSFCLLeanavrplvrvledpdhgacEASLDALVTLIEgerlqngskvlEDANAIDRMVRflsspspklqEKALDSVERIFRlpefkqkygksaqmplvdltqrgnssmKSLSARVLAHLNVlqdqssyf
MMALDVVTsastvpaseALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKElnkrdlshseglnsaIEILNREIKgakelttecskrnkvylLMNCRAIVKRLKDTAREISQALgilplasldlSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEiensrmrkdqAEAVQMDQIIALLeradaasspreKEMKYFskrkslgsqplepLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTvldtsilrpnkTLRQSieewkdrntmITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHilvkdsndtkerlangddavESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAatslarfsknslglsrpIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRflsspspklqekalDSVERIFRLPEfkqkygksaqmplVDLTQRGNSSMKSLSARVLAHlnvlqdqssyf
MMALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQraefraaiaeeeiLEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDlllhhsssssslREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
*****************ALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGIS***********************************I*********************************LQSFYCPITRDVMVDPVET**GQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKD*************AVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTM********************F*DDNVVQMAKANYFKHLLQRLS**********ATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLH**************AIMHLAVSTMY******PVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRF******************IFRL***********************************************
*************PASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELN***********SAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEIL***************************************************************DQIIALLE*****************************LQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT*******************************************NYIPKLIYLLGSKNRDVRNRALIILHILVKDSN******ANGDDAVESIVRS********KLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS******SRDAQELLENLSFSDDNVVQMAKANYFKHLL*********VKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQN*PNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLAR********************FSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQ******
*************PASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERA**************SKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHS*********TATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
****DVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSP*****************PLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSS*F
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHxxxxxxxxxxxxxxxxxxxxxTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEExxxxxxxxxxxxxxxxxxxxxILEKVESGIQERNVDRSYANHLLSLIADAVGISTExxxxxxxxxxxxxxxxxxxxxxxxxxxxQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1008 2.2.26 [Sep-21-2011]
Q9SFX2811 U-box domain-containing p yes no 0.735 0.913 0.296 1e-64
Q9LM76801 U-box domain-containing p no no 0.733 0.922 0.290 2e-63
Q9CAA71033 Putative U-box domain-con no no 0.798 0.779 0.244 2e-45
Q9SNC6660 U-box domain-containing p no no 0.562 0.859 0.245 6e-32
Q9ZV31654 U-box domain-containing p no no 0.556 0.857 0.242 2e-25
Q0IMG9694 E3 ubiquitin-protein liga no no 0.483 0.701 0.241 2e-23
A2ZLU6694 Protein spotted leaf 11 O N/A no 0.483 0.701 0.241 2e-23
Q5VRH9611 U-box domain-containing p no no 0.429 0.708 0.227 3e-23
Q9C7R6729 U-box domain-containing p no no 0.415 0.574 0.244 9e-23
Q681N2660 U-box domain-containing p no no 0.428 0.654 0.255 2e-22
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1 Back     alignment and function desciption
 Score =  248 bits (634), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 233/785 (29%), Positives = 393/785 (50%), Gaps = 44/785 (5%)

Query: 264  QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS----DGNNL-CPLTMTVLDTSILRPN 318
            ++F CP+T+ VM +PV   +GQTFER AIEKWF     +G  L CP+T   L  + L P+
Sbjct: 27   EAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKELSITDLSPS 86

Query: 319  KTLRQSIEEWKDRNTMITIASMKPKLVSTEVE-EVLHCLEQLQDLCQQRDQHREWVILEN 377
              LR +IEEW+ RN  + +   +  L     E  +L  L+ ++++C+   + R+ V    
Sbjct: 87   IALRNTIEEWRARNDALKLDIARQSLYLGNAETNILLALKNVREICRNIRKIRQRVCNPQ 146

Query: 378  YIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEE-R 436
             +  +  +L S + +VR +AL  L ++V+   ++K  +A G D V +IV+ L +   + R
Sbjct: 147  LVRLITDMLKSSSHEVRCKALQTLQVVVEGDEESKAIVAEG-DTVRTIVKFLSQEPSKGR 205

Query: 437  KLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQAS--RDAQELLENLSFSDDN 494
            + AV++L ELS    L ++IG + G I+LLV + SS     S    A + L NL  S++N
Sbjct: 206  EAAVSVLFELSKSEALCEKIGSIHGAIILLVGLTSSKSENVSTVEKADKTLTNLERSEEN 265

Query: 495  VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR 554
            V QMA     + LL +L  G    K+ MA  L  + L +  K  ++   V   L+ L+  
Sbjct: 266  VRQMAINGRLQPLLAKLLEGSPETKVSMAFYLGVLALNNDVKV-IVAQTVGSSLIDLMRT 324

Query: 555  GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHL 614
             D+  ++ A+ AL N+SS   +   +I  G + PL+  L +   +   +R +  +A +  
Sbjct: 325  RDMSQREAALGALNNISSFEGSAKLLINTGILPPLIKDLFYVGPNQLPIRLKEVSATILA 384

Query: 615  AVSTMYQESSQTPV----TLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP-SAG 669
             +  +  +  + PV      L S++ +  L  L + TGP +Q ++L     L   P S  
Sbjct: 385  NIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQLTSNTGPEIQGKLLAVLVGLTSCPNSVI 444

Query: 670  NIKTTLTQCSAIPVLVQLCE-HDNENVRANAVKLFCCLVDDGDEAI---IREHVGQKCLE 725
            N+ + +   +AI  LVQ  E H+N+++R  ++KL   +     E +   +R  VGQ  L 
Sbjct: 445  NVVSAIRNSAAIISLVQFVEIHENDDLRLASIKLLHNISPHMSEELANALRSTVGQ--LG 502

Query: 726  TLVTIIQSSHN--EEEIASAMGILSKLPEVP-QFTQWLLDAGALPIVLNFLKNGRQNDPN 782
            +LV+II  +     EE A+A G+L++LPE     T  LL  GA   +++ +   RQ +  
Sbjct: 503  SLVSIISENTPTITEEQAAAAGLLAELPERDLVLTMRLLREGAFEKIISKIVGIRQGEIR 562

Query: 783  --RFQ--VVENAVGALRRFTAPTNLEWQKR--AAEAGVIPKLVQLLEYGTTLTKEHA-AT 835
              RF+   +E  V  L R T     E        E  +    + LL+  +    + A AT
Sbjct: 563  GIRFERTFLEGLVSILARITFALTKETDATLFCCEKNLPSLFLDLLQSNSQDNIQRASAT 622

Query: 836  SLARFSKNSLGLSR----PIPKR--KGFWCFSPPPEI--GCQVHGGLCGIESSFCLLEAN 887
            +L   S  S  L++    P P      F C S PP +   C++H G+C +  SFCL+E  
Sbjct: 623  ALENLSLESKNLTKIPELPPPTYCVSIFSCLSKPPVVLGICKIHQGICSVRESFCLVEGQ 682

Query: 888  AVRPLVRVLEDPDHGACEASLDALVTLIE-GERLQNGSKVLEDANAIDRMVR-FLSSPSP 945
            AV  LV +L+  +      +L AL TL+E G  +  G +++++A+ I  ++   L + + 
Sbjct: 683  AVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVVQGVRLIDEADGITPILNVLLENRTE 742

Query: 946  KLQEKALDSVERIFRLPEFKQKYG--KSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQD 1003
             L+ +A+  VERI R+ E  ++ G  ++    LVD  Q  +   + ++ + L H++ + +
Sbjct: 743  NLRIRAVWMVERILRIEEIAREVGEEQNVTAALVDAFQNADFRTRQIAEKALRHIDKIPN 802

Query: 1004 QSSYF 1008
             S  F
Sbjct: 803  FSGIF 807
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1 Back     alignment and function description
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1 Back     alignment and function description
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 Back     alignment and function description
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 Back     alignment and function description
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 Back     alignment and function description
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 Back     alignment and function description
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1 Back     alignment and function description
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1008
2555646011033 Spotted leaf protein, putative [Ricinus 0.999 0.974 0.693 0.0
2977455111006 unnamed protein product [Vitis vinifera] 0.998 1.0 0.705 0.0
3594897511032 PREDICTED: U-box domain-containing prote 0.998 0.974 0.687 0.0
3575125751001 U-box domain-containing protein [Medicag 0.992 0.999 0.649 0.0
3565599231030 PREDICTED: U-box domain-containing prote 0.993 0.971 0.627 0.0
357514475993 U-box domain-containing protein [Medicag 0.980 0.994 0.629 0.0
3021439451003 unnamed protein product [Vitis vinifera] 0.995 1.0 0.604 0.0
3594908181019 PREDICTED: U-box domain-containing prote 0.995 0.984 0.595 0.0
224130612691 predicted protein [Populus trichocarpa] 0.680 0.992 0.749 0.0
3565186511007 PREDICTED: U-box domain-containing prote 0.999 1.0 0.512 0.0
>gi|255564601|ref|XP_002523295.1| Spotted leaf protein, putative [Ricinus communis] gi|223537383|gb|EEF39011.1| Spotted leaf protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1469 bits (3803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 716/1033 (69%), Positives = 852/1033 (82%), Gaps = 26/1033 (2%)

Query: 2    MALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELN 61
            M LDV+  AS+VPA+E LSQ+VE ++E+  A+NNVLIKKE+FKEL  Y++RI+P+LKELN
Sbjct: 1    MVLDVLAGASSVPAAEFLSQVVEGMIEITYAANNVLIKKENFKELTIYMDRIIPILKELN 60

Query: 62   KRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQA 121
            K+D+ HSEGL+ AIEILNRE+K AK+LT +C+KRNKVYLLMNCR I K L+D  RE+S+A
Sbjct: 61   KKDMGHSEGLSKAIEILNREVKAAKQLTVDCTKRNKVYLLMNCRTIAKNLEDITREMSRA 120

Query: 122  LGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANH 181
            L ILPLASL LS+ IIEE+ K+ D+MQRAEFRAA  EEEILEK+E+ IQERNVDRSYAN+
Sbjct: 121  LDILPLASLGLSSGIIEEVVKLSDSMQRAEFRAAKTEEEILEKIETAIQERNVDRSYANN 180

Query: 182  LLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSP 241
            L++ IA+AVGIST+R+ +KKE +EFKSEIEN+++RK+QAEA+QM QIIALLERADAASSP
Sbjct: 181  LVASIAEAVGISTDRATIKKEVEEFKSEIENTQLRKNQAEAIQMAQIIALLERADAASSP 240

Query: 242  REKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNN 301
            +EKEMK+F+KRK LGSQ LEPL+SFYCPIT+DVMV+PVETSSGQTFERSAIEKW +DGNN
Sbjct: 241  KEKEMKHFTKRKCLGSQLLEPLRSFYCPITQDVMVNPVETSSGQTFERSAIEKWLADGNN 300

Query: 302  LCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQD 361
            +CPLTMT +DTS+LRPN+TLRQSIEEWKDRNTMITI S+K KL+S E EEVL CL QL+D
Sbjct: 301  ICPLTMTPIDTSVLRPNRTLRQSIEEWKDRNTMITITSLKSKLMSEEEEEVLQCLGQLED 360

Query: 362  LCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTK--------- 412
            LC+QRDQHREWV+LENYIP LI LLG++NRD+RN AL+IL IL KDS+D K         
Sbjct: 361  LCEQRDQHREWVLLENYIPILIQLLGARNRDIRNHALVILCILAKDSDDAKIVLIIDAFC 420

Query: 413  -----------------ERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQ 455
                             ER+A  D+A+ESIV+SLGRRI ERKLAV LL+ELS C  ++D 
Sbjct: 421  MNPANLNCNFFLCYLLQERIAKVDNAIESIVKSLGRRIGERKLAVVLLIELSKCTLVKDC 480

Query: 456  IGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGP 515
            IG VQGCILLLVTM+SSDD+QA++DAQELLENLS+SD N++ MAKANYFKHLLQRL  GP
Sbjct: 481  IGKVQGCILLLVTMSSSDDSQAAKDAQELLENLSYSDKNIILMAKANYFKHLLQRLCTGP 540

Query: 516  ESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQ 575
            + VKM MATTLA+MELTDH+KASL EG VLGPLL LVS GD  MK VA+KA+RN+SS+P 
Sbjct: 541  DDVKMAMATTLADMELTDHNKASLFEGGVLGPLLQLVSDGDDGMKMVAIKAVRNISSLPA 600

Query: 576  NGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDK 635
            NGLQMI+EGA  PL+DLL  H + SS LRE+ +  IMHLA ST+ Q SS+ P++LLESDK
Sbjct: 601  NGLQMIREGAARPLLDLLFRHITPSSGLREQVSATIMHLAESTVSQGSSRAPISLLESDK 660

Query: 636  EIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENV 695
            +   LFSLIN TGP+VQQ IL+ F ALC+SPSA NIKT L +  A+ VLVQLCEH+N NV
Sbjct: 661  DTLTLFSLINFTGPDVQQNILRIFYALCQSPSASNIKTRLNEYRAMQVLVQLCEHENLNV 720

Query: 696  RANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQ 755
            R NA+KL CCLV+DGDEA I EHV  KCL TL+ IIQSS++ EEIASAMGI++  PE PQ
Sbjct: 721  RPNAIKLLCCLVEDGDEAAILEHVDHKCLTTLLRIIQSSNDVEEIASAMGIIANFPENPQ 780

Query: 756  FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVI 815
             TQ LLDAGAL  ++ FL N  Q DP++ Q+VENAVGAL RFT P  LEWQKRAAEAG+I
Sbjct: 781  ITQLLLDAGALQKIVKFLPNSMQYDPHKNQLVENAVGALCRFTVPAKLEWQKRAAEAGII 840

Query: 816  PKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLC 875
            P LVQLL+ GT LT+++AA SL  FS++S  LSR I K KGFWC S P E GC VHGGLC
Sbjct: 841  PLLVQLLDVGTALTRKYAAISLTHFSESSPRLSRAISKHKGFWCISAPQETGCMVHGGLC 900

Query: 876  GIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDR 935
             ++SSFCL+EA+A+ PLVRVLEDPD G  EASLDAL+TLIE ERLQ+GSK+L +ANAI  
Sbjct: 901  DVQSSFCLVEADAIVPLVRVLEDPDSGVREASLDALLTLIEAERLQSGSKLLSEANAIPS 960

Query: 936  MVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVL 995
            +++ L S SP LQEKAL+++ERIFRLPEFKQKYG SAQMPLVDLTQRGN SMKSLSAR+L
Sbjct: 961  IIKLLCSSSPTLQEKALNALERIFRLPEFKQKYGPSAQMPLVDLTQRGNGSMKSLSARIL 1020

Query: 996  AHLNVLQDQSSYF 1008
            AHLN+L DQSSYF
Sbjct: 1021 AHLNLLHDQSSYF 1033

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745511|emb|CBI40591.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489751|ref|XP_002264635.2| PREDICTED: U-box domain-containing protein 43-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357512575|ref|XP_003626576.1| U-box domain-containing protein [Medicago truncatula] gi|355501591|gb|AES82794.1| U-box domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356559923|ref|XP_003548245.1| PREDICTED: U-box domain-containing protein 43-like [Glycine max] Back     alignment and taxonomy information
>gi|357514475|ref|XP_003627526.1| U-box domain-containing protein [Medicago truncatula] gi|355521548|gb|AET02002.1| U-box domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|302143945|emb|CBI23050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359490818|ref|XP_002271691.2| PREDICTED: U-box domain-containing protein 43 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130612|ref|XP_002320884.1| predicted protein [Populus trichocarpa] gi|222861657|gb|EEE99199.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518651|ref|XP_003527992.1| PREDICTED: U-box domain-containing protein 43-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1008
TAIR|locus:2030462801 SAUL1 "senescence-associated E 0.652 0.821 0.299 1.5e-53
TAIR|locus:2014584811 PUB43 "plant U-box 43" [Arabid 0.525 0.653 0.311 2e-51
TAIR|locus:2075140660 PUB13 "plant U-box 13" [Arabid 0.323 0.493 0.255 1.4e-31
TAIR|locus:2102455760 AT3G54790 [Arabidopsis thalian 0.266 0.353 0.257 1e-26
TAIR|locus:2162276660 PUB15 "Plant U-Box 15" [Arabid 0.532 0.813 0.241 3.4e-25
TAIR|locus:2045334829 PUB4 "plant U-box 4" [Arabidop 0.186 0.226 0.308 1.1e-24
UNIPROTKB|Q0IMG9694 SPL11 "E3 ubiquitin-protein li 0.283 0.412 0.245 1.5e-23
TAIR|locus:2008813782 AT1G67530 [Arabidopsis thalian 0.075 0.097 0.454 3.2e-22
TAIR|locus:2181077674 SAUR21 "SMALL AUXIN UP RNA 21" 0.306 0.458 0.25 6.2e-22
TAIR|locus:2082682632 PUB14 "plant U-box 14" [Arabid 0.304 0.485 0.223 1.8e-21
TAIR|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 574 (207.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 212/708 (29%), Positives = 337/708 (47%)

Query:   264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNL-----CPLTMTVLDTSILRPN 318
             ++F CP+T++VM DPV   +G+TFER AIEKWF +  +      CPLT   L ++ +  +
Sbjct:    25 EAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTSQELTSTDVSAS 84

Query:   319 KTLRQSIEEWKDRNTMITIASMKPKLVSTEVE-EVLHCLEQLQDLCQQRDQHREWVILEN 377
               LR +IEEW+ RN    +   +  L     E ++L  L  ++ +C+    +R  V    
Sbjct:    85 IALRNTIEEWRSRNDAAKLDIARQSLFLGNAETDILQALMHVRQICRTIRSNRHGVRNSQ 144

Query:   378 YIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGRRIEE-R 436
              I  +I +L S +  VR +AL  L ++V+  +++K  +A GD  V ++V+ L     + R
Sbjct:   145 LIHMIIDMLKSTSHRVRYKALQTLQVVVEGDDESKAIVAEGD-TVRTLVKFLSHEPSKGR 203

Query:   437 KLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQAS--RDAQELLENLSFSDDN 494
             + AV+LL ELS    L ++IG + G ++LLV + SS+    S    A   LEN+  S++ 
Sbjct:   204 EAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLENMERSEEI 263

Query:   495 VVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSR 554
             V QMA     + LL +L  G    K+ MA+ L E+ L +  K  L+   V   L+ L+  
Sbjct:   264 VRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLNNDVKV-LVAQTVGSSLVDLMRS 322

Query:   555 GDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDXXXXXXXXXXXXR-EETATAIMH 613
             GD+  ++ A+KAL  +SS   +   +I +G + PL+             R +E +  I+ 
Sbjct:   323 GDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRLKEVSATILA 382

Query:   614 LAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP-SAGNIK 672
               V+  Y     T    L S+  +  L  LI+ TGP +Q ++L+    L   P +   + 
Sbjct:   383 NIVNIGYDFDKAT----LVSENRVENLLHLISNTGPAIQCKLLEVLVGLTSCPKTVPKVV 438

Query:   673 TTLTQCSAIPVLVQLCE-HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKC-LETLVTI 730
               +    AI  LVQ  E  +N+++R  ++KL   L     E + +   G    L +LV I
Sbjct:   439 YAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGTAGQLGSLVAI 498

Query:   731 I-QSSHNEEEIASAMGILSKLPEVPQ-FTQWLLDAGALPIVLNFLKNGRQNDPN--RF-- 784
             I + +   EE A+A G+L++LP+     TQ +L+ GA   +++ +   RQ D    RF  
Sbjct:   499 ISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQGDIKGMRFVN 558

Query:   785 QVVENAVGALRRFTAPTNLEWQ--KRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARFS 841
               +E  V  L R T   N E +      E  V    + LL+  G    +  +A +L   S
Sbjct:   559 PFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQMVSAMALENLS 618

Query:   842 KNSLGLSR-PIPKRKGFWCFSPPPEIGC----QVHGGLCGIESSFCLLEANAVRPLVRVL 896
               S+ L+R P P    + C S      C     V  GLC I    C L     R    ++
Sbjct:   619 LESIKLTRMPDPPPVNY-CGSI---FSCVRKPHVVNGLCKIHQGICSL-----RETFCLV 669

Query:   897 EDPDHGACE---ASLD-ALVTLIEGERLQNGSKVLEDANAIDRMVRFL 940
             E    GA E   A LD   V ++E   L   S +LED   +++ V+ L
Sbjct:   670 EG---GAVEKLVALLDHENVKVVEAA-LAALSSLLEDGLDVEKGVKIL 713
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0010115 "regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0010150 "leaf senescence" evidence=IMP
GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP
GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP
GO:0090359 "negative regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2008813 AT1G67530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181077 SAUR21 "SMALL AUXIN UP RNA 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00037213001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (1003 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1008
smart0050463 smart00504, Ubox, Modified RING finger domain 1e-19
pfam0456473 pfam04564, U-box, U-box domain 2e-14
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 5e-08
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 1e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 5e-05
pfam1344555 pfam13445, zf-RING_LisH, RING-type zinc-finger, Li 6e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 2e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 2e-04
pfam1178957 pfam11789, zf-Nse, Zinc-finger of the MIZ type in 7e-04
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain Back     alignment and domain information 
 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQS 324
            F CPI+ +VM DPV   SGQT+ERSAIEKW    +   P+T   L    L PN  L+ +
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 325 IEEW 328
           I+EW
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63
>gnl|CDD|203049 pfam04564, U-box, U-box domain Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1008
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.98
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.98
PF05804708 KAP: Kinesin-associated protein (KAP) 99.94
PF05804708 KAP: Kinesin-associated protein (KAP) 99.93
KOG1048717 consensus Neural adherens junction protein Plakoph 99.84
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 99.84
KOG1048717 consensus Neural adherens junction protein Plakoph 99.8
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.75
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.73
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.63
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.62
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.62
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.61
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.6
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.57
KOG1293 678 consensus Proteins containing armadillo/beta-caten 99.56
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.55
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.54
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.51
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.49
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.48
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.47
KOG1293678 consensus Proteins containing armadillo/beta-caten 99.44
PRK09687280 putative lyase; Provisional 99.42
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.4
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.38
PRK09687280 putative lyase; Provisional 99.37
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 99.35
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.34
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.31
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.28
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.25
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 99.23
PTZ00429 746 beta-adaptin; Provisional 99.19
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.17
PTZ00429 746 beta-adaptin; Provisional 99.15
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.05
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.02
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.98
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.95
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.95
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.92
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.79
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.78
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.77
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.77
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.72
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.69
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.69
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.68
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 98.62
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.57
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.55
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.53
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.52
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.5
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.49
PF05536543 Neurochondrin: Neurochondrin 98.49
KOG18241233 consensus TATA-binding protein-interacting protein 98.48
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.46
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.44
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.43
TIGR02270410 conserved hypothetical protein. Members are found 98.43
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.42
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.41
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.34
TIGR02270410 conserved hypothetical protein. Members are found 98.32
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.32
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 98.31
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.28
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 98.28
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.28
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.27
PF05536543 Neurochondrin: Neurochondrin 98.26
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.18
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.18
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.15
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 98.14
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.13
KOG1242 569 consensus Protein containing adaptin N-terminal re 98.12
COG5113929 UFD2 Ubiquitin fusion degradation protein 2 [Postt 98.11
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.05
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.02
KOG1242569 consensus Protein containing adaptin N-terminal re 98.01
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.0
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.0
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 97.97
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.97
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.97
KOG0211 759 consensus Protein phosphatase 2A regulatory subuni 97.95
KOG2042943 consensus Ubiquitin fusion degradation protein-2 [ 97.94
KOG0287442 consensus Postreplication repair protein RAD18 [Re 97.94
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.92
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.91
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.88
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 97.86
KOG0212 675 consensus Uncharacterized conserved protein [Funct 97.84
KOG3678832 consensus SARM protein (with sterile alpha and arm 97.83
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 97.8
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.8
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.78
PHA02929238 N1R/p28-like protein; Provisional 97.77
KOG4646173 consensus Uncharacterized conserved protein, conta 97.74
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 97.7
PRK14707 2710 hypothetical protein; Provisional 97.69
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.68
KOG4646173 consensus Uncharacterized conserved protein, conta 97.67
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.67
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.62
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.59
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.58
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.57
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.55
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.55
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.5
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.49
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.49
PRK14707 2710 hypothetical protein; Provisional 97.48
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.46
PF05659147 RPW8: Arabidopsis broad-spectrum mildew resistance 97.45
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.43
KOG2734536 consensus Uncharacterized conserved protein [Funct 97.42
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.35
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.34
KOG0567289 consensus HEAT repeat-containing protein [General 97.34
KOG2734536 consensus Uncharacterized conserved protein [Funct 97.33
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.25
COG5369743 Uncharacterized conserved protein [Function unknow 97.23
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.15
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.15
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.15
PHA02926242 zinc finger-like protein; Provisional 97.14
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 97.14
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.13
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.09
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 97.07
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.04
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.02
COG5369 743 Uncharacterized conserved protein [Function unknow 97.0
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.96
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 96.95
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.94
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 96.92
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.9
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 96.87
KOG4535728 consensus HEAT and armadillo repeat-containing pro 96.86
PF1463444 zf-RING_5: zinc-RING finger domain 96.81
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.8
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 96.73
KOG0567289 consensus HEAT repeat-containing protein [General 96.72
KOG0289506 consensus mRNA splicing factor [General function p 96.67
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.6
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 96.53
KOG0297391 consensus TNF receptor-associated factor [Signal t 96.52
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.49
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.49
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.45
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 96.41
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.38
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.3
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.29
KOG0414 1251 consensus Chromosome condensation complex Condensi 96.27
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 96.24
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.23
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 96.18
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 96.11
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 96.11
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.11
COG5222427 Uncharacterized conserved protein, contains RING Z 96.04
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.01
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.97
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 95.8
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 95.79
PF05004309 IFRD: Interferon-related developmental regulator ( 95.68
KOG3036293 consensus Protein involved in cell differentiation 95.58
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.53
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.43
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.39
KOG22741005 consensus Predicted importin 9 [Intracellular traf 95.31
KOG3036293 consensus Protein involved in cell differentiation 95.15
PF11841160 DUF3361: Domain of unknown function (DUF3361) 95.14
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.11
PF11841160 DUF3361: Domain of unknown function (DUF3361) 95.1
PF05004309 IFRD: Interferon-related developmental regulator ( 95.08
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 95.06
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 95.05
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 95.04
KOG2660331 consensus Locus-specific chromosome binding protei 95.01
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 94.98
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 94.61
KOG3039303 consensus Uncharacterized conserved protein [Funct 94.58
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 94.56
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 94.43
KOG1002791 consensus Nucleotide excision repair protein RAD16 94.4
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 94.39
KOG2979262 consensus Protein involved in DNA repair [General 94.37
KOG04141251 consensus Chromosome condensation complex Condensi 94.25
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 94.24
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 94.21
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 94.12
PF04641260 Rtf2: Rtf2 RING-finger 94.08
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 93.9
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 93.87
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 93.8
KOG3039303 consensus Uncharacterized conserved protein [Funct 93.78
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 93.76
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 93.45
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 93.3
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 93.09
KOG12481176 consensus Uncharacterized conserved protein [Funct 93.05
PF08045257 CDC14: Cell division control protein 14, SIN compo 93.04
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 92.96
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 92.91
KOG2062929 consensus 26S proteasome regulatory complex, subun 92.62
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 92.4
KOG4367699 consensus Predicted Zn-finger protein [Function un 92.22
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 92.21
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 92.19
COG5152259 Uncharacterized conserved protein, contains RING a 91.98
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 91.87
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 91.75
KOG0883518 consensus Cyclophilin type, U box-containing pepti 91.36
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 91.35
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 91.29
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 91.07
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 90.97
KOG2025 892 consensus Chromosome condensation complex Condensi 90.83
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 90.76
KOG3113293 consensus Uncharacterized conserved protein [Funct 90.5
KOG4653982 consensus Uncharacterized conserved protein [Funct 90.46
KOG2062 929 consensus 26S proteasome regulatory complex, subun 90.33
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 90.27
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 90.26
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 90.12
KOG1566342 consensus Conserved protein Mo25 [Function unknown 89.68
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 89.67
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 89.17
PF08045257 CDC14: Cell division control protein 14, SIN compo 89.05
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 89.05
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 89.01
smart00638574 LPD_N Lipoprotein N-terminal Domain. 88.93
KOG2032533 consensus Uncharacterized conserved protein [Funct 88.33
KOG2025 892 consensus Chromosome condensation complex Condensi 88.25
PF11701157 UNC45-central: Myosin-binding striated muscle asse 88.23
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 88.03
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 87.99
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 87.82
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 87.5
KOG4653982 consensus Uncharacterized conserved protein [Funct 87.48
KOG2956516 consensus CLIP-associating protein [General functi 87.39
PF07814361 WAPL: Wings apart-like protein regulation of heter 87.27
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 87.1
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 86.63
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 86.01
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 85.97
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 85.15
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 85.12
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 85.02
KOG2032533 consensus Uncharacterized conserved protein [Funct 84.84
PF11701157 UNC45-central: Myosin-binding striated muscle asse 84.8
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 84.64
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 84.46
COG5209315 RCD1 Uncharacterized protein involved in cell diff 83.4
COG5209315 RCD1 Uncharacterized protein involved in cell diff 83.17
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 83.06
PF07814361 WAPL: Wings apart-like protein regulation of heter 82.96
COG5116 926 RPN2 26S proteasome regulatory complex component [ 82.02
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 81.76
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 81.36
COG5109396 Uncharacterized conserved protein, contains RING Z 81.31
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 81.24
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 80.78
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.4e-53  Score=527.05  Aligned_cols=620  Identities=20%  Similarity=0.264  Sum_probs=525.5

Q ss_pred             hhhhhhhccCc--chHHHHHHHHHHHHHHhhchhhhhhHhh-cCchHHHHHHHcCCCHHHHHHHHHHHHHhccCChhhHH
Q 001833          337 IASMKPKLVST--EVEEVLHCLEQLQDLCQQRDQHREWVIL-ENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKE  413 (1008)
Q Consensus       337 ~~~~~~~l~~~--~~~~~~~al~~L~~l~~~~~~~r~~i~~-~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~  413 (1008)
                      +..++.++.++  +++.+..++.+|+.++++++++|..+.+ .|+||.|+.+|++++..+|..|+.+|.+|+.++ ++|.
T Consensus        15 v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e-~nk~   93 (2102)
T PLN03200         15 VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLRV   93 (2102)
T ss_pred             HHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHHH
Confidence            44455666655  6788999999999999999999999986 899999999999999999999999999999986 8999


Q ss_pred             HhhccCCcHHHHHHHhcc-ChhHHHHHHHHHHHhccC---chhhHHhhcccchHHHHHHHhcCCC---hHHHHHHHHHHH
Q 001833          414 RLANGDDAVESIVRSLGR-RIEERKLAVALLLELSTC---NTLRDQIGDVQGCILLLVTMASSDD---NQASRDAQELLE  486 (1008)
Q Consensus       414 ~i~~~~g~i~~Lv~~L~~-~~~~~~~A~~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL~  486 (1008)
                      .|+. .|++++|+++|.+ +.+.++.|+.+|++|+.+   +.++..|+...|+||.|+.++++++   ..++..++.+|+
T Consensus        94 ~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~  172 (2102)
T PLN03200         94 KVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR  172 (2102)
T ss_pred             HHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence            9998 9999999999977 467899999999999986   5567677766899999999999764   345677889999


Q ss_pred             hhcCCcccHH-HHHhcCcHHHHHHHHhcCCHHHHHHHHHHHHHHcCC-hhhHHHHhhcCcHHHHHHHhccC-CHHHHHHH
Q 001833          487 NLSFSDDNVV-QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRG-DIQMKKVA  563 (1008)
Q Consensus       487 ~Ls~~~~n~~-~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A  563 (1008)
                      |||.+++++. .+++.|+++.|+.+|+++++..+.+|+++|.+++.. ++.+..+++.|+||.|+++|+++ ++.+|+.|
T Consensus       173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~A  252 (2102)
T PLN03200        173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEA  252 (2102)
T ss_pred             HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHH
Confidence            9999999875 568999999999999999999999999999888755 57899999999999999999875 56899999


Q ss_pred             HHHHHHhhC-CCchhHHHHhcCChHHHHHHhcccCC------CCcchHHHHHHHHHHHhccccc------------cc--
Q 001833          564 VKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSS------SSSSLREETATAIMHLAVSTMY------------QE--  622 (1008)
Q Consensus       564 ~~aL~~L~~-~~~~~~~i~~~G~v~~Ll~ll~~~~~------~~~~~~~~a~~~L~nLa~~~~~------------~~--  622 (1008)
                      +++|.+||. +++++..+++.|++|.|++++.....      ....++++|+|+|.||+.+...            +.  
T Consensus       253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~  332 (2102)
T PLN03200        253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPA  332 (2102)
T ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHH
Confidence            999999997 57889999999999999999975431      1245799999999999984111            00  


Q ss_pred             -----------------c------------------------CCcc------------------cccccchhHHHHHHHh
Q 001833          623 -----------------S------------------------SQTP------------------VTLLESDKEIFMLFSL  643 (1008)
Q Consensus       623 -----------------~------------------------~~~~------------------~~~l~~~~~i~~L~~l  643 (1008)
                                       .                        .+..                  ...+.+.++++.|+.|
T Consensus       333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L  412 (2102)
T PLN03200        333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL  412 (2102)
T ss_pred             HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence                             0                        0000                  0123344566778888


Q ss_pred             hccCChHHHHHHHHHHHHhccCCChhhHHHHhhhcCChHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHhhhcccc
Q 001833          644 INLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKC  723 (1008)
Q Consensus       644 l~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~  723 (1008)
                      +...+.++|..++++|++|+.+  +.+.+..+.+.|+++.|+++|.++++.++..|+++|.+++ .++++....+.+.|+
T Consensus       413 L~~~~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa-~~ndenr~aIieaGa  489 (2102)
T PLN03200        413 ITMATADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILT-DEVDESKWAITAAGG  489 (2102)
T ss_pred             hccCCHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCC
Confidence            8888899999999999999985  5677889999999999999999999999999999999998 667778888899999


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHhcCCC-ChhhHHHHHhcCCHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHhcCCCC
Q 001833          724 LETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTN  802 (1008)
Q Consensus       724 i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~~~a~~aL~~L~~~~~  802 (1008)
                      ++.|+++|.++ +.+++..|+++|+||+. +++.+..+.+.|++++|+++|++      .+...++.++++|.+++.+.+
T Consensus       490 IP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s------gd~~~q~~Aa~AL~nLi~~~d  562 (2102)
T PLN03200        490 IPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN------GGPKGQEIAAKTLTKLVRTAD  562 (2102)
T ss_pred             HHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHhccc
Confidence            99999999974 66899999999999998 44555556688999999999998      567899999999999975322


Q ss_pred             HHH------------------------------------HHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhhhcCCC
Q 001833          803 LEW------------------------------------QKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLG  846 (1008)
Q Consensus       803 ~~~------------------------------------~~~l~~~g~l~~Lv~lL~~~~~~v~~~Aa~aL~nLs~~~~~  846 (1008)
                      .+.                                    .+.....|++|.|+++++++++.+++.|+|+|.+++..   
T Consensus       563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~---  639 (2102)
T PLN03200        563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS---  639 (2102)
T ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---
Confidence            211                                    11112468999999999999999999999999999832   


Q ss_pred             CCCCCCCCCcccccCCCCCCcccccCcccCcccchhHhhccchHHHHHhhcCCChhhhHHHHHHHHhhh-cccccchhhH
Q 001833          847 LSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSK  925 (1008)
Q Consensus       847 l~~~~~~~~g~~~~~~~~~~~c~vh~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~aL~~L~-~~~~~~~~~~  925 (1008)
                                                   +.++...++..|+|+||+.+|.+.+.+++..+.+||.++. .+  .+..+.
T Consensus       640 -----------------------------~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~--~~~q~~  688 (2102)
T PLN03200        640 -----------------------------RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI--KENRKV  688 (2102)
T ss_pred             -----------------------------ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC--CHHHHH
Confidence                                         3344556889999999999999999999999999999999 33  224456


Q ss_pred             HHHhcCchHHHHHHhcCCChHHHHHHHHHHHHHhcChHHHHHhccc-cCchhhhhcccCCchhhHHHHHHHHHHhccc
Q 001833          926 VLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKS-AQMPLVDLTQRGNSSMKSLSARVLAHLNVLQ 1002 (1008)
Q Consensus       926 ~i~~~~~i~~l~~ll~~~~~~l~~~a~~~L~~l~~~~~~~~~~~~~-~~~~Lv~l~~~~~~~~~~~Aa~~L~~L~~~~ 1002 (1008)
                      .+.+.|++++|++++++.+.++.+.|+.+|.+++..++.+..+... +..+|++++++|+++.|+.|+.+|.+|.+-.
T Consensus       689 ~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~  766 (2102)
T PLN03200        689 SYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHF  766 (2102)
T ss_pred             HHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence            6789999999999999999999999999999999999988877644 4788999999999999999999999998653

>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1008
1t1h_A78 Nmr Solution Structure Of The U Box Domain From Atp 2e-10
4db6_A210 Designed Armadillo Repeat Protein (Yiiim3aii) Lengt 6e-07
4db8_A252 Designed Armadillo-Repeat Protein Length = 252 2e-06
4db8_A252 Designed Armadillo-Repeat Protein Length = 252 4e-05
4db9_A210 Designed Armadillo Repeat Protein (Yiiim3aiii) Leng 2e-06
4db9_A210 Designed Armadillo Repeat Protein (Yiiim3aiii) Leng 3e-05
4dba_A210 Designed Armadillo Repeat Protein (Yiim3aii) Length 5e-06
4dba_A210 Designed Armadillo Repeat Protein (Yiim3aii) Length 2e-04
1bk6_A422 Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng 8e-06
1bk5_A422 Karyopherin Alpha From Saccharomyces Cerevisiae Len 2e-05
1ee4_A423 Crystal Structure Of Yeast Karyopherin (Importin) A 2e-05
2c1t_A454 Structure Of The Kap60p:nup2 Complex Length = 454 2e-05
1ee5_A424 Yeast Karyopherin (Importin) Alpha In A Complex Wit 2e-05
1wa5_B530 Crystal Structure Of The Exportin Cse1p Complexed W 2e-05
1un0_A443 Crystal Structure Of Yeast Karyopherin (Importin) A 2e-05
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQ 323
           + F CPI+ ++M DPV  S+GQT+ERS+I+KW   G+  CP +   L  + L PN  L+ 
Sbjct: 7   EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66
Query: 324 SIEEWKDRN 332
            I  W + N
Sbjct: 67  LIALWCESN 75
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 Back     alignment and structure
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 Back     alignment and structure
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 Back     alignment and structure
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 Back     alignment and structure
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 Back     alignment and structure
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 Back     alignment and structure
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 Back     alignment and structure
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 Back     alignment and structure
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 Back     alignment and structure
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 Back     alignment and structure
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 Back     alignment and structure
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 Back     alignment and structure
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 Back     alignment and structure
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1008
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-56
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-52
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-42
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-37
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-55
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 4e-35
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-18
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-55
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-41
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-37
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-21
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 9e-34
2f42_A179 STIP1 homology and U-box containing protein 1; cha 8e-32
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 7e-30
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-19
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 1e-18
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 6e-18
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-29
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 4e-21
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-17
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-28
3nmz_A458 APC variant protein; protein-protein complex, arma 5e-22
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-20
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-17
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 3e-28
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-25
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 6e-25
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 3e-16
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 8e-10
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 7e-28
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-25
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-21
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-18
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 8e-28
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 4e-22
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-18
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 4e-18
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 4e-16
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-24
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 5e-23
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-21
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 6e-21
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-17
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-16
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-07
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 1e-23
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 3e-23
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-21
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 8e-17
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-15
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 4e-21
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 8e-21
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-18
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 2e-07
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 9e-21
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 3e-18
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-17
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 5e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 8e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 4e-16
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 1e-12
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 3e-12
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-11
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 3e-11
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 7e-09
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 1e-06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 6e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 3e-09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 8e-09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 1e-08
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 4e-11
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 1e-09
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 7e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 1e-07
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 1e-06
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 1e-06
1z6u_A150 NP95-like ring finger protein isoform B; structura 2e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-06
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 6e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 1e-05
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 1e-05
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 1e-05
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-05
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 3e-05
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 3e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-05
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
 Score =  203 bits (519), Expect = 1e-56
 Identities = 95/549 (17%), Positives = 193/549 (35%), Gaps = 49/549 (8%)

Query: 421 AVESIVRSLGRR-IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVT-MASSDDNQAS 478
           A+  + + L          A  ++ +LS     R  I      +  +V  M +++D + +
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 479 RDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKA 537
           R     L NLS   + ++ + K+     L++ L +  +SV     TTL  + L  +  K 
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 538 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHH 596
           ++     L  ++ L+++ +++   +    L+ L+    ++ L ++  G    LV+++   
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM--R 195

Query: 597 SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRIL 656
           + +   L   T+  +  L+V       S     ++E+   +  L   +      + Q  L
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVC------SSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCL 248

Query: 657 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDE--AI 714
            T   L  + +             +  LVQL   D+ NV   A  +   L  +  +   +
Sbjct: 249 WTLRNLSDAATK-----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303

Query: 715 IREHVGQKCLETLVTIIQSSHNEEEI-ASAMGILSKL----PEVPQFTQWLLDAGALPIV 769
           + +  G   +E LV  +  + + E+I   A+  L  L     E       +     LP+V
Sbjct: 304 VCQVGG---IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 770 LNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLT 829
           +  L             +  A   L R  A           E G IP+LVQLL      T
Sbjct: 361 VKLLHPPS------HWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 830 KEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAV 889
           +   +    +           I +                +H     + +   +   N +
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVE-----------GCTGALHILARDVHNRIVIRGLNTI 462

Query: 890 RPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQE 949
              V++L  P       +   L  L + +     ++ +E   A   +   L S +  +  
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 950 KALDSVERI 958
            A   + R+
Sbjct: 520 YAAAVLFRM 528
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1008
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 9e-21
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 1e-15
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 4e-11
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-07
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 9e-18
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-17
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 3e-04
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 7e-17
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 5e-14
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 5e-09
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-08
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-07
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 8e-12
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 2e-11
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 3e-10
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 3e-10
d1wgma_98 g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu 5e-08
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 6e-07
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 2e-06
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 6e-06
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-05
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 4e-04
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 8e-05
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 2e-04
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 3e-04
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-04
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.004
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.002
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 0.002
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.004
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (234), Expect = 9e-21
 Identities = 79/602 (13%), Positives = 177/602 (29%), Gaps = 77/602 (12%)

Query: 359 LQDLCQQRDQHREWVILENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANG 418
           + +L    +   +  +    IP+L  LL  +++ V N+A +++H L K        + + 
Sbjct: 2   VVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 419 DDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQAS 478
                                V+ ++                        M +++D + +
Sbjct: 59  Q-------------------MVSAIVRT----------------------MQNTNDVETA 77

Query: 479 RDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDH-HKA 537
           R     L NLS   + ++ + K+     L++ L +  +SV     TTL  + L     K 
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 538 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHS 597
           ++     L  ++ L+++ +++   +    L+ L+   Q    +I        +  ++   
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197

Query: 598 SSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQ 657
           +    L   T + ++ +       + +      +++        S   +       R L 
Sbjct: 198 TYEKLL--WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 658 TFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIRE 717
                                S    +V        N          C        + + 
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN--------LTCNNYKNKMMVCQV 307

Query: 718 HVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWL-LDAGALPIVLNFLKNG 776
              +  + T++         E    A+  L+   +  +  Q        LP+V+  L   
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367

Query: 777 RQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATS 836
                 +  V                        E G IP+LVQLL      T+   +  
Sbjct: 368 SHWPLIKATVG-------LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 837 LARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVL 896
             +           I +                +H     + +   +   N +   V++L
Sbjct: 421 GTQQQFVEGVRMEEIVE-----------GCTGALHILARDVHNRIVIRGLNTIPLFVQLL 469

Query: 897 EDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVE 956
             P       +   L  L + +     ++ +E   A   +   L S +  +   A   + 
Sbjct: 470 YSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 957 RI 958
           R+
Sbjct: 527 RM 528
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1008
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.93
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.92
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.81
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.74
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.71
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.71
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.7
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.68
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.67
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.64
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.62
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.61
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.58
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.57
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.54
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.47
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.37
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.35
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.28
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.22
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.2
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.03
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.94
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.89
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.81
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.77
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.7
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 98.58
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.95
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 97.91
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 97.78
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 97.55
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.48
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 97.31
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.26
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 97.15
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 96.66
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 96.53
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.16
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 95.89
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.8
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 93.12
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 92.79
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 80.45
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-43  Score=323.71  Aligned_cols=488  Identities=19%  Similarity=0.205  Sum_probs=371.7

Q ss_pred             CCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             59568999987389988899999999983169934599853157838999999316--9269999999999740270036
Q 001833          376 ENYIPKLIYLLGSKNRDVRNRALIILHILVKDSNDTKERLANGDDAVESIVRSLGR--RIEERKLAVALLLELSTCNTLR  453 (1008)
Q Consensus       376 ~g~i~~L~~lL~s~~~~~~~~Al~~L~~Ls~~~~~~k~~i~~~~g~i~~lv~~L~~--~~~~~~~A~~~L~~Ls~~~~~~  453 (1008)
                      .+++|.|+++|++++..++..|+..+..++.++ ..+..++...|.++.++++|.+  +.+.++.|+.+|.+++.+++.+
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             979999999872999999999999999998455-7789998713399999999847999999999999999995891669


Q ss_pred             HHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-CHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             8842000469999998539994889999999985138950-099998528479999998159978999999999997179
Q 001833          454 DQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDD-NVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT  532 (1008)
Q Consensus       454 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~-n~~~i~~~g~i~~Li~~L~~~~~~~~~~aa~~L~~Ls~~  532 (1008)
                      ..+.+ .|+++.|+.+++++++.++..|+.+|.+++.+.+ .+..+.+.|++++|+.++.+++.+++..++.+|.+++..
T Consensus        95 ~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          95 LAIFK-SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             99998-79899999985797989999999999986513201136787658814899988705768888889999887630


Q ss_pred             -HHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             -44699875068479899872269-9878999999999950899205899860975999999601489991069999999
Q 001833          533 -DHHKASLLEGNVLGPLLHLVSRG-DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATA  610 (1008)
Q Consensus       533 -~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~~~~~~~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~~  610 (1008)
                       ++.+..+...|+++.|+.+++.. ....+..++.++.+++.+++++..+++.|+++.|+.++.+++   ..++..++++
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~---~~~~~~a~~~  250 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS---QRLVQNCLWT  250 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC---HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC---HHHHHHHHHH
T ss_conf             0478888876056368999998610489999999987511013323304565433346999862540---1555301567


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             99974053553468865453452348999998522589478999999999950599902599996416976899985116
Q 001833          611 IMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEH  690 (1008)
Q Consensus       611 L~nLa~~~~~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~e~~~i~~Li~ll~~  690 (1008)
                      +.+++.....         .....++++.++.++.+.++.++..++++|.+++..  +...+..+.+.++++.|+.++..
T Consensus       251 l~~ls~~~~~---------~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~Li~~l~~  319 (529)
T d1jdha_         251 LRNLSDAATK---------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLR  319 (529)
T ss_dssp             HHHHHTTCTT---------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT--CHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHCCCCCCC---------HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7750432110---------256640101445412454288999999988750122--03788888875007899999984


Q ss_pred             --CCHHHHHHHHHHHHHHCCCCCH-H-HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCH
Q ss_conf             --7745899999999983448980-4-78863163425799987228999999999999984399995658999963987
Q 001833          691 --DNENVRANAVKLFCCLVDDGDE-A-IIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGAL  766 (1008)
Q Consensus       691 --~~~~i~~~a~~~L~~Ls~~~~~-~-~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~~L~nL~~~~~~~~~l~~~g~i  766 (1008)
                        +.++++..++++|.+++..... + ....+...++++.|+.++..+++..++..+++++++++.++.....+.+.|++
T Consensus       320 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i  399 (529)
T d1jdha_         320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI  399 (529)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHH
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCH
T ss_conf             00111378899988500220000000356667764561247898715312789999999875000035666666532657


Q ss_pred             HHHHHHHHCCCC----------------CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Q ss_conf             999998407998----------------9982356999999999771488998899999981996799999640995899
Q 001833          767 PIVLNFLKNGRQ----------------NDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTK  830 (1008)
Q Consensus       767 ~~L~~lL~~~~~----------------~~~~~~~i~~~a~~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  830 (1008)
                      +.++.++.++..                .......+.+.++.++..++.  .+..+..+.+.|+++.|+.+|.++++.++
T Consensus       400 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~  477 (529)
T d1jdha_         400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQ  477 (529)
T ss_dssp             HHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHCCCCHHHH
T ss_conf             9999998667889999998603467764121319999999999999844--98889999978889999998679998999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999986431047998888999986311489998765446853474430367434560789872058981365999999
Q 001833          831 EHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDA  910 (1008)
Q Consensus       831 ~~Aa~aL~nls~~s~~l~~~~~~~~g~~~~~~~~~~~c~~h~~~c~~~~~~~l~~~g~i~~Lv~lL~~~d~~v~~~al~a  910 (1008)
                      ..|+++|++++.+                                 .+....+...|++++|+++++++|+.++..+..+
T Consensus       478 ~~a~~aL~~L~~~---------------------------------~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~a  524 (529)
T d1jdha_         478 RVAAGVLCELAQD---------------------------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV  524 (529)
T ss_dssp             HHHHHHHHHHTTS---------------------------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---------------------------------HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999998659---------------------------------4669999988889999998579999999999999


Q ss_pred             HHHH
Q ss_conf             9753
Q 001833          911 LVTL  914 (1008)
Q Consensus       911 L~~L  914 (1008)
                      |..|
T Consensus       525 L~~l  528 (529)
T d1jdha_         525 LFRM  528 (529)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9974
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure