Citrus Sinensis ID: 001844

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------
MGIEGAEMQVPDSLMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLMTAPGSEAGLGRTFASRTD
ccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccEEEEcccccEEEEccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHHHHccEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccc
cccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccEEEcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHcccccccccEEEEEEccccccccHHHHHccEEEEEEEcccccccccccccccccccccHccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccHcccccHcHHHHHHHHHHHcccccHHHHHHcccccccccccccHHHEcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHcccccccccccHHcccHHHHHHcHHcccccccccEEEEcHHHHHHccccccHHHccccccccccccccHHHHHHHccccccccccccccccEEcccccHHHHHHHHccccEHHccccccccccccccHccccHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHccHHHccccccccccHHHHccccccccccccccccccEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEcHHHHHHccccccccccccccccccccccccc
mgiegaemqvpdslmDKIYGVFSVGIhfatpvsssrtneVDLVRGVLQMLQGLSSslfywdesVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTrvettgrissptLRAFSSAVSAWLKMFRGIALKEEMKItesnvgntpTLLGLASSLSSLCSGGEYLLQIVdgaipqvcfqfnmpvpaAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLfegmlddpyeEMFFYANRaisvdkaefWEKSYVLRQLQCWKldaesssltsesshvreTNEKRQNGLresislsssvkglqacpLFIKDIAKSIISAGKSLQLIRHvssksnddrieclgnfnygsdwstvhrgqsiagLTLSEIFCISLAGLIGHGDHIFRYfwqddscesefipslpsymndqmtrngNTETLAVLTHSEKTWFKFLLDTLLQKgvidqksgnkvasnvpnmkeenmgkiiennlftqktfcpenpvisVCDVSLNINKSSNIWNALNLsrnyylpplndEVLRKAVLGaesgniselkgtnyafgfqfgesehlrsqCDTKLlevlfpfptilpsfrdelhisellpfqknstlpsrvLSWIqsveprttplpvVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKldkgenwdddFELNTLLQESIRnsadgkllsapDALEVLITeshgsnsdeqpsmanlastprkshphsfgidglDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWkgrslatnshshkrHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKlnvghfphlaDLVTRINYNYFymsdsgnlmtapgseaglgrtfasrtd
mgiegaemqvpdSLMDKIYGVFSVGIHFatpvsssrtnEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVettgrissptlraFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAEsssltsesshvretnekrqnglresislsssvkglQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKgvidqksgnkvasnvpnmkeeNMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESgniselkgtNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPfqknstlpsrVLSWIQsveprttplpVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITEShgsnsdeqpSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRslatnshshkrHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLmtapgseaglgrtfasrtd
MGIEGAEMQVPDSLMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTllglasslsslcsggeyllQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAesssltsessHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLMTAPGSEAGLGRTFASRTD
*************LMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLD**********************************KGLQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYM*******GNTETLAVLTHSEKTWFKFLLDTLLQKGVID*******************GKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESI***********************************************FGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSD***********************
***********************************RTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVT**********PTLRAFSSAVSAWLKMFRGIALKEEM************LLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQ******AAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQ***************************************KGLQACPLFIKDIAKSIISAGKSLQLIRHVS**************NYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPS****************TLAVLTHSEKTWFKFLLDTL*********************************LFTQKTFCPENPVISVCD******************************************************************CDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSS*****************IEKQFDDCIVFLLRVLSFKLN*GHFPHLADLVTRINYNYFY**************************
MGIEGAEMQVPDSLMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDA************************ESISLSSSVKGLQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESH**********************HSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRS********KRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLMTAPGSEAGLGRTFASRTD
********QVPDSLMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCW****************************************QACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMND********ETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSD***********************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGIEGAEMQVPDSLMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLMTAPGSEAGLGRTFASRTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1006 2.2.26 [Sep-21-2011]
Q8BKN51024 Gamma-tubulin complex com yes no 0.302 0.296 0.287 8e-32
Q95K09725 Gamma-tubulin complex com N/A no 0.302 0.419 0.282 3e-30
Q96RT81024 Gamma-tubulin complex com yes no 0.302 0.296 0.282 1e-29
Q96RT71819 Gamma-tubulin complex com no no 0.326 0.180 0.249 8e-19
Q9UGJ1667 Gamma-tubulin complex com no no 0.331 0.499 0.233 7e-15
Q9D4F8667 Gamma-tubulin complex com no no 0.330 0.497 0.235 2e-14
Q95ZG4813 Spindle pole body compone yes no 0.280 0.346 0.236 6e-13
Q9USQ2832 Spindle pole body compone yes no 0.312 0.377 0.255 5e-12
P58854905 Gamma-tubulin complex com no no 0.267 0.297 0.212 5e-12
Q96CW5907 Gamma-tubulin complex com no no 0.267 0.296 0.215 6e-12
>sp|Q8BKN5|GCP5_MOUSE Gamma-tubulin complex component 5 OS=Mus musculus GN=Tubgcp5 PE=2 SV=2 Back     alignment and function desciption
 Score =  139 bits (351), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 174/365 (47%), Gaps = 61/365 (16%)

Query: 631  VIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFN 690
            + ++ CL  +I KQ  H    ++  L  D+RL++ L  +R  +L+  GD +  F T IF+
Sbjct: 685  LTLRSCLYPHIDKQYLHCCGNLMQTLKRDFRLVEYLQAMRNFFLMEGGDTMYDFYTSIFD 744

Query: 691  KLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAS 750
            K+ + E W +   LN  LQE++            D+L + I            S  N+ +
Sbjct: 745  KIREKETWQNVSFLNVQLQEAVGQRY------PEDSLRLSI------------SFENVDT 786

Query: 751  TPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALD-- 808
            T +K       +  LD L  +YKV WP++++ ++E  K YNQV   LL++K AK++LD  
Sbjct: 787  TKKK-----LPVHILDGLTLSYKVPWPVDIVISVECQKIYNQVFLLLLQIKWAKYSLDVL 841

Query: 809  -------KARRWMWK----------------GRSLATNSHSHKRHWLVEQKLLHFVDAFH 845
                    A R   K                  SL    H   R +L+  KL+HFV++ H
Sbjct: 842  LFGELGNAAERSQAKEDIPRDQDTPSQFGPPKESLRQQIH---RMFLLRVKLMHFVNSLH 898

Query: 846  QYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINS 905
             Y+M R+ HS   E    +  A  LD++I++H  YL +I  +C +  +K+ + +   I  
Sbjct: 899  NYIMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLR-EKV-SFVKEAIMK 956

Query: 906  ILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFP 965
            +L LAL F        + G  + + A     ++++E  F +C +FL+ +L+  +  G FP
Sbjct: 957  VLNLALMF--------AEGWQAGLGAWQMESIEKMESDFKNCHMFLVTILNKAVCRGSFP 1008

Query: 966  HLADL 970
            HL  L
Sbjct: 1009 HLESL 1013
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)
>sp|Q95K09|GCP5_MACFA Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis GN=TUBGCP5 PE=2 SV=2 Back     alignment and function description
>sp|Q96RT8|GCP5_HUMAN Gamma-tubulin complex component 5 OS=Homo sapiens GN=TUBGCP5 PE=1 SV=1 Back     alignment and function description
>sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1 SV=3 Back     alignment and function description
>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1 Back     alignment and function description
>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2 SV=2 Back     alignment and function description
>sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2 Back     alignment and function description
>sp|Q9USQ2|ALP6_SCHPO Spindle pole body component alp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp6 PE=1 SV=2 Back     alignment and function description
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2 Back     alignment and function description
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1006
2254585031023 PREDICTED: uncharacterized protein LOC10 0.982 0.965 0.705 0.0
3565180801002 PREDICTED: uncharacterized protein LOC10 0.975 0.979 0.647 0.0
449447225984 PREDICTED: uncharacterized protein LOC10 0.960 0.981 0.645 0.0
224124794977 tubulin gamma complex-associated protein 0.949 0.977 0.646 0.0
145337796995 Spc97 / Spc98 family of spindle pole bod 0.956 0.966 0.612 0.0
297850476981 tubulin family protein [Arabidopsis lyra 0.927 0.951 0.606 0.0
255580731863 transferase, transferring glycosyl group 0.843 0.983 0.670 0.0
297842841989 EMB1427 [Arabidopsis lyrata subsp. lyrat 0.954 0.970 0.601 0.0
22329693976 Spc97 / Spc98 family of spindle pole bod 0.941 0.970 0.581 0.0
88869551002 F2D10.5 [Arabidopsis thaliana] 0.941 0.945 0.566 0.0
>gi|225458503|ref|XP_002282254.1| PREDICTED: uncharacterized protein LOC100247210 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1431 bits (3705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1013 (70%), Positives = 820/1013 (80%), Gaps = 25/1013 (2%)

Query: 6    AEMQVPDSLMDKIYGVFSVGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVR 65
            A      SL+DKI    S GIHFATP+SS RTNE+DLVRGVLQ+LQG SSSLFYWD + +
Sbjct: 17   ARTDASRSLIDKISSALSDGIHFATPISSLRTNEIDLVRGVLQILQGFSSSLFYWDHAGQ 76

Query: 66   SFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAV 125
            SF  K+GIYVTHLSLKS+HV+LNQF+YAATCLKLVEI + +VE + R S PTL+AF+ ++
Sbjct: 77   SFQAKSGIYVTHLSLKSLHVILNQFMYAATCLKLVEILINKVEKSVRQSPPTLKAFACSI 136

Query: 126  SAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQ 185
            S WLK  R +ALKEE KI+ SN+G TPTLLGLAS LSSLCSG EYLLQ+V GAIPQ+ F+
Sbjct: 137  STWLKRLRDVALKEETKISNSNIGTTPTLLGLASGLSSLCSGAEYLLQVVHGAIPQIYFE 196

Query: 186  FNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFE 245
             N  VPAA++A HILD+LYKKL+EVC +QGGEVE YQMLL +FVGSLLPYIEGLDSWL+E
Sbjct: 197  PNSSVPAAEMATHILDHLYKKLNEVCHMQGGEVEAYQMLLFVFVGSLLPYIEGLDSWLYE 256

Query: 246  GMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEK 305
            G LDDP  EMFFYAN+ IS+D+AEFWEKSY+LR LQ   LD E S++   SS +  TN+K
Sbjct: 257  GTLDDPCNEMFFYANKTISIDEAEFWEKSYLLRPLQ--SLDVELSAMIGTSSRLPSTNDK 314

Query: 306  RQNGLRESISLSSSVKG-------LQACPLFIKDIAKSIISAGKSLQLIRHV-------S 351
            ++   RESIS SSS+KG       L+ CPLF++DIAK IISAGKSLQLIRHV       S
Sbjct: 315  KEMAGRESISTSSSMKGKEQSSKDLKLCPLFVEDIAKPIISAGKSLQLIRHVPMMTSAPS 374

Query: 352  SKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDD 411
             + +   I   G+   G+  S +HRGQSIAGLTLSEIFC+SL GLIGHGDHI +YFW +D
Sbjct: 375  GRKSVHEINGFGSSYDGNISSKIHRGQSIAGLTLSEIFCVSLVGLIGHGDHISKYFWLED 434

Query: 412  SCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVA 471
             C  +      S+M+ Q    GN E+L  L  SEK WFKFL++TLLQKG ID  S +K A
Sbjct: 435  PCNPKIFSLFESHMDKQNLEKGNGESLPNLACSEKIWFKFLVETLLQKGEIDFGSKHKNA 494

Query: 472  SNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLP 531
            ++  ++KEE +     + L  + + CPENPVI++C + LN N+ +  W+ LNLSRN+YLP
Sbjct: 495  NDFHDVKEETIAGGALDELLLRSS-CPENPVITMCKLFLNKNRDA--WSTLNLSRNFYLP 551

Query: 532  PLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPS 591
            PLNDE LR+A+ G + G  S  KGT+YAF F+F ESE+LRS+ DTKLLE LFPFPT+LPS
Sbjct: 552  PLNDEGLREAIFGEKIGLGSSAKGTDYAFAFKFAESEYLRSKDDTKLLEELFPFPTLLPS 611

Query: 592  FRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKL 651
            F++ L +SELLPFQKNSTL SRVL+W+QSVE +  PLPVVIMQECL VYIKKQVD+IG+ 
Sbjct: 612  FQENLQMSELLPFQKNSTLSSRVLTWLQSVELKVVPLPVVIMQECLIVYIKKQVDYIGRH 671

Query: 652  ILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQES 711
            ILS LMNDWRLMDEL VLRAIYLLGSGDLLQHFLTV+FNKLDKGE+WDDDFELNT+LQES
Sbjct: 672  ILSKLMNDWRLMDELGVLRAIYLLGSGDLLQHFLTVLFNKLDKGESWDDDFELNTILQES 731

Query: 712  IRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFT 771
            IRNSADG LL+APD+L V IT+ H  N DEQ + A+L STPR+S   SFGIDGLDLLKFT
Sbjct: 732  IRNSADGMLLTAPDSLVVSITKHHSLNGDEQHNTASLVSTPRRSR-ESFGIDGLDLLKFT 790

Query: 772  YKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHW 831
            YKVSWPLELIAN EAIKKYNQVMGFLLKVKRAKF LDKARRWMWKGR  AT +  H  HW
Sbjct: 791  YKVSWPLELIANTEAIKKYNQVMGFLLKVKRAKFVLDKARRWMWKGRGTATINRKH--HW 848

Query: 832  LVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVA 891
            LVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFV 
Sbjct: 849  LVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVV 908

Query: 892  PDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFL 951
            PDKLWALIASRINSILGLAL+FYSIQQTLSS GAVSAIKARCEMEVDRIEKQFDDC+ FL
Sbjct: 909  PDKLWALIASRINSILGLALDFYSIQQTLSSGGAVSAIKARCEMEVDRIEKQFDDCVAFL 968

Query: 952  LRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLMTAPGSE---AGLGRTF 1001
            LRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNL+T PGSE   + LG+ F
Sbjct: 969  LRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLVTGPGSETVTSKLGKAF 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356518080|ref|XP_003527712.1| PREDICTED: uncharacterized protein LOC100782299 [Glycine max] Back     alignment and taxonomy information
>gi|449447225|ref|XP_004141369.1| PREDICTED: uncharacterized protein LOC101221298 [Cucumis sativus] gi|449498744|ref|XP_004160621.1| PREDICTED: uncharacterized protein LOC101229679 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124794|ref|XP_002329950.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222871972|gb|EEF09103.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145337796|ref|NP_565235.3| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|110737741|dbj|BAF00809.1| hypothetical protein [Arabidopsis thaliana] gi|332198257|gb|AEE36378.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850476|ref|XP_002893119.1| tubulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297338961|gb|EFH69378.1| tubulin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255580731|ref|XP_002531187.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223529228|gb|EEF31202.1| transferase, transferring glycosyl groups, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297842841|ref|XP_002889302.1| EMB1427 [Arabidopsis lyrata subsp. lyrata] gi|297335143|gb|EFH65561.1| EMB1427 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22329693|ref|NP_564117.2| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332191867|gb|AEE29988.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8886955|gb|AAF80641.1|AC069251_34 F2D10.5 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1006
TAIR|locus:2016334995 emb1427 "embryo defective 1427 0.955 0.965 0.596 9e-299
TAIR|locus:2030417976 AT1G20570 [Arabidopsis thalian 0.821 0.846 0.525 5.8e-208
ZFIN|ZDB-GENE-050522-3441015 tubgcp5 "tubulin, gamma comple 0.300 0.297 0.310 2.7e-41
UNIPROTKB|F1NEV31027 TUBGCP5 "Uncharacterized prote 0.298 0.292 0.229 1.4e-32
UNIPROTKB|F6QEL81024 TUBGCP5 "Uncharacterized prote 0.130 0.127 0.321 1.4e-29
RGD|13046891024 Tubgcp5 "tubulin, gamma comple 0.130 0.127 0.321 1.8e-29
UNIPROTKB|Q96RT81024 TUBGCP5 "Gamma-tubulin complex 0.131 0.128 0.323 2.5e-29
UNIPROTKB|E9PB121024 TUBGCP5 "Gamma-tubulin complex 0.138 0.135 0.307 3.2e-29
MGI|MGI:21788361024 Tubgcp5 "tubulin, gamma comple 0.130 0.127 0.321 1.6e-28
UNIPROTKB|F1RXS11758 TUBGCP6 "Uncharacterized prote 0.329 0.188 0.263 2.9e-28
TAIR|locus:2016334 emb1427 "embryo defective 1427" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2868 (1014.6 bits), Expect = 9.0e-299, P = 9.0e-299
 Identities = 594/996 (59%), Positives = 715/996 (71%)

Query:    24 VGIHFATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSV 83
             V  H    + S    E+DLVRG+LQ LQGLSS   +WD++ ++F  K+ I V+HLS  S+
Sbjct:    21 VWTHSELALPSVSVTELDLVRGLLQALQGLSSPFLFWDQTGQTFRAKSHIRVSHLSHSSL 80

Query:    84 HVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKI 143
             HV+L  F+Y ATCLKLVE  V  + T+ R S PTL AFS +VSAWL+  R IALKEE+ I
Sbjct:    81 HVLLAGFLYPATCLKLVESIVAAINTSLR-SPPTLMAFSDSVSAWLERLRDIALKEEVMI 139

Query:   144 TESNVGNTPTXXXXXXXXXXXXXXXXXXXQIVDGAIPQVCFQFNMPVPAAQVAVHILDYL 203
               S++  TPT                   Q+V GAIP   F  N  + AA++AVH+LDYL
Sbjct:   140 DNSDITVTPTLLGLTSSLSSLCSGAEYLLQVVHGAIPHTFFDSNSTISAAEIAVHVLDYL 199

Query:   204 YKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAI 263
             YKKLDEVCLVQGGEVE + MLL +F GSLLPYIEGLDSWLFEG LDDP EE+FF AN+++
Sbjct:   200 YKKLDEVCLVQGGEVEGFHMLLQMFAGSLLPYIEGLDSWLFEGTLDDPCEELFFTANQSV 259

Query:   264 SVDKAEFWEKSYVLRQLQCWKLDAXXXXXXXXXXHVRETNEKR-QNGLRESISLSSSVKG 322
             SVD AEFWEKSY L ++   K             +V   NEK+  +G   + SL+S    
Sbjct:   260 SVDDAEFWEKSYQLMKVPNSK------------SNVTSLNEKKVMSGHDANSSLASDKDK 307

Query:   323 LQ----ACPLFIKDIAKSIISAGKSLQLIRHVSSKS--NDDRIECLGNFNYGSD-----W 371
              Q     CPLFIKDI KSI+SAGKSLQL++H+ S S  N  + +  G   YG        
Sbjct:   308 EQNTRVLCPLFIKDICKSIVSAGKSLQLMQHIPSTSSENSGKTQFHGRNGYGKSSVGSLL 367

Query:   372 STVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTR 431
             + +    S A L+LSE+FC++LAGLIGHGDH+ RY W+D++ E E  P+L SY++ ++  
Sbjct:   368 TKMSSCSSTADLSLSEVFCLTLAGLIGHGDHVSRYLWKDEADEWEISPTLASYISGELVN 427

Query:   432 NGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLF 491
             + + + L VLT SE+ W+K L+  + +K  ++ KS  + A     +K+ N G   +  L 
Sbjct:   428 DMDNKDLPVLTCSERMWYKLLVGAVQEKRAMEAKSELQSACYATGVKDGNSGLTAQKAL- 486

Query:   492 TQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNIS 551
              Q  FC EN V+SV  + L  N+  N WN LNLS+NY LP LNDE L  AV   ESG   
Sbjct:   487 -QGLFCNENLVVSVSKMDLERNR--NAWNVLNLSQNYCLPSLNDESLLSAVF-EESGMAD 542

Query:   552 E-LKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTL 610
               L GTNY FGFQFG SE++ SQ DT LLE LFPFPT+LPSF+ +LH+SE LPFQKNSTL
Sbjct:   543 AGLSGTNYKFGFQFGRSEYISSQDDTNLLETLFPFPTLLPSFQPKLHLSEFLPFQKNSTL 602

Query:   611 PSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLR 670
             PSRVLSW+   EP  T LPVVIMQEC T+YI++QVD+IGK+ILS LMNDW+LM ELAVLR
Sbjct:   603 PSRVLSWLLKAEPMDTRLPVVIMQECFTIYIRRQVDYIGKVILSKLMNDWKLMHELAVLR 662

Query:   671 AIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVL 730
             AIYLLGSGDLLQHFLTVIF++L KGE+ +DDFELN +LQESIRNSAD  LLS+PD+L V 
Sbjct:   663 AIYLLGSGDLLQHFLTVIFDRLGKGESSNDDFELNIILQESIRNSADAMLLSSPDSLVVS 722

Query:   731 ITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKY 790
             I+     + D++  +  L+ST RKS  +SFGID L+ LKFTYKV WPLELIAN EAIKKY
Sbjct:   723 ISRED-RDKDDKGDIIPLSST-RKSRVNSFGIDCLESLKFTYKVPWPLELIANSEAIKKY 780

Query:   791 NQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMD 850
             NQVMGFLLKVKRAK+ LDKARRWMWKG+  AT    H  HWL+EQKLL+FVDAFHQYVMD
Sbjct:   781 NQVMGFLLKVKRAKYVLDKARRWMWKGKGSATKIRKH--HWLLEQKLLNFVDAFHQYVMD 838

Query:   851 RVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLA 910
             RVYH+AWRELCE M  AGSLDEVI VHE YLLSIQRQCFV  +KLWA+IASRIN ILGLA
Sbjct:   839 RVYHTAWRELCEAMVKAGSLDEVIYVHETYLLSIQRQCFVVQEKLWAIIASRINMILGLA 898

Query:   911 LEFYSIQQTLSSSGAVSAIKARCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADL 970
             LEFYSIQQTLSS GAVSAIKARCEME+DRIEKQF+DCI FLLRVLS KLNVGHFPHLADL
Sbjct:   899 LEFYSIQQTLSSGGAVSAIKARCEMEIDRIEKQFEDCIAFLLRVLSSKLNVGHFPHLADL 958

Query:   971 VTRINYNYFYMSDSGNLMTAPGSEAGLGRTFASRTD 1006
             VTRINYNY YMSD+G+LMT  G+E    R + +++D
Sbjct:   959 VTRINYNYHYMSDTGSLMTTSGAETNSSRPWTAKSD 994
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005815 "microtubule organizing center" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0015631 "tubulin binding" evidence=ISS
TAIR|locus:2030417 AT1G20570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-344 tubgcp5 "tubulin, gamma complex associated protein 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEV3 TUBGCP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F6QEL8 TUBGCP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304689 Tubgcp5 "tubulin, gamma complex associated protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q96RT8 TUBGCP5 "Gamma-tubulin complex component 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PB12 TUBGCP5 "Gamma-tubulin complex component 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2178836 Tubgcp5 "tubulin, gamma complex associated protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXS1 TUBGCP6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014750001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1012 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1006
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 2e-49
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 4e-28
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  183 bits (466), Expect = 2e-49
 Identities = 87/261 (33%), Positives = 132/261 (50%), Gaps = 11/261 (4%)

Query: 632 IMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNK 691
           +    L + I        K +L  L+ ++ L+  L  L+  +LLG GD +  FL  +F++
Sbjct: 276 LDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDE 335

Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
           LDK  N   D  L +LLQE++R+S      S+ D       +   +   +     N    
Sbjct: 336 LDKPANSLSDHALQSLLQEALRSS------SSDDDPASSDLDELETKKSDSSETLN--RL 387

Query: 752 PRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKAR 811
              S   S G+ GLD L   YKV WPL LI   EA+KKY ++  FLL++KRA++ L+K  
Sbjct: 388 DVSSLELSSGLSGLDALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLW 447

Query: 812 RWMWKGRSLATNSHSHK---RHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAG 868
           + + K R L +   +     + WL+  ++LHFV++   Y+   V  S W++L E +  A 
Sbjct: 448 KELNKRRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAK 507

Query: 869 SLDEVIEVHEAYLLSIQRQCF 889
            LDE+I  HE YL SI   CF
Sbjct: 508 DLDELIAAHEDYLDSILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1006
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
KOG2000879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 93.84
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-70  Score=619.35  Aligned_cols=616  Identities=21%  Similarity=0.347  Sum_probs=472.6

Q ss_pred             CccCCHHHHHHHHHHHhcCCCCccEEEeCC--C---ccEEEccCceeccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001844           34 SSRTNEVDLVRGVLQMLQGLSSSLFYWDES--V---RSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVE  108 (1006)
Q Consensus        34 ~~~i~E~~lvrelL~~L~G~~s~lf~~~~~--~---~~f~v~~~~~l~~lS~~sl~~lL~~~~~~g~~~~~Lr~fv~~~~  108 (1006)
                      ++-.+|..+++|++++|.|++|.++.++..  .   .+..-++.+.|..--+.+++.+++++++.|.+|..+++||+...
T Consensus        89 ~lp~QE~~li~dLl~af~Gv~~ryV~~Q~~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s  168 (734)
T KOG2001|consen   89 PLPSQESKLIDDLLYAFVGVEGRYVSPQYMIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETS  168 (734)
T ss_pred             CchhHHHHHHHHHHHHHcCCCcceeecchhhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            344689999999999999999999987521  1   11112333444333377999999999999999999999999875


Q ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHhhccCCcccccCCC
Q 001844          109 TTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNM  188 (1006)
Q Consensus       109 ~~~~~~~~~~qAfa~al~~~L~~y~~~l~~lE~~~~~~~~~~~~sLl~L~~~l~~~~~~~~~L~~l~~~~~~~~~~~~~~  188 (1006)
                      ..  .+|.|.+|+|+|+++.|.+|+..+.++|.+...    ...||..|...++|+...++.++..+....         
T Consensus       169 ~f--~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~----~~lslq~L~~y~qP~m~~m~~l~~~~~~~~---------  233 (734)
T KOG2001|consen  169 FF--EYGQVNHALAAALRELLYDYYELISQLEQELRT----NRLSLQDLWFYMQPMMRSMRRLAVAATTTV---------  233 (734)
T ss_pred             hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHhhhHHHHHHHHHHHhhhh---------
Confidence            32  589999999999999999999999999999883    368999999999999888876666554322         


Q ss_pred             CCCCccchhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCccceEEEccCC----C
Q 001844          189 PVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAI----S  264 (1006)
Q Consensus       189 ~~~~~~~~~~lLs~Ly~~~~~~~~~~~gd~~~~~~l~~L~~~~~~PYl~~l~~Wi~~G~L~D~~~EFFI~~~~~~----~  264 (1006)
                        .+.+.|+.+|+.|.+.+..+    .||+.++.++..++..+++||++|+.+||..|.+.|||+||||..|...    .
T Consensus       234 --~~~~~gg~vls~l~~~~~~~----~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k~~l~  307 (734)
T KOG2001|consen  234 --KKVCKGGAVLSLLQSSIKEN----LGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDNLITKEDLP  307 (734)
T ss_pred             --ccccCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhcchhhhcCc
Confidence              24579999999999888663    6999999999999999999999999999999999999999999988321    1


Q ss_pred             C-CcccccccceEEeecccccccccccccccccccccchhhhhhccccccccccccccCCCCCCcccHHHHHHHHHhhHH
Q 001844          265 V-DKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKS  343 (1006)
Q Consensus       265 ~-~~~~~W~~~y~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~Fl~~~a~~Il~aGKs  343 (1006)
                      - ..++||+.+|+++.                                            ..+|.|+...+++||.|||+
T Consensus       308 ed~~d~YW~~RY~ir~--------------------------------------------dqiP~fL~~~adkIL~tGKY  343 (734)
T KOG2001|consen  308 EDYTDKYWDQRYTIRK--------------------------------------------DQIPGFLLSEADKILRTGKY  343 (734)
T ss_pred             hhhhHHHHHHhheech--------------------------------------------hhcchHHHHHHHHHHHhhhH
Confidence            1 36679999999997                                            36999999999999999999


Q ss_pred             HHHHHhhCCCCCchhhhhccCCCCCCCCccccccccccccchhHHHHHhhhcccCCCCccccccccCCCCCccccCCCcc
Q 001844          344 LQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPS  423 (1006)
Q Consensus       344 l~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  423 (1006)
                      ||++|+||+...     .              |                                        +.+    
T Consensus       344 LNVvReC~~~v~-----~--------------p----------------------------------------~~~----  360 (734)
T KOG2001|consen  344 LNVVRECGKIVT-----I--------------P----------------------------------------QSS----  360 (734)
T ss_pred             HHHHHHhCccCC-----C--------------C----------------------------------------cch----
Confidence            999999995432     0              0                                        000    


Q ss_pred             ccccccccCCCcccccccccchhhHHHHHHhhhhhccccccccCCcccCCCCccccccchhhhhcccccccccCCCCCcc
Q 001844          424 YMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVI  503 (1006)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (1006)
                                |          +.               .                                     +|. 
T Consensus       361 ----------n----------~~---------------~-------------------------------------~~~-  367 (734)
T KOG2001|consen  361 ----------N----------EI---------------N-------------------------------------DPA-  367 (734)
T ss_pred             ----------h----------hh---------------c-------------------------------------ccc-
Confidence                      0          00               0                                     000 


Q ss_pred             cccccccccccccchhhhhhcccccCCCCCChHHHHHHHhccccCCcccccCCCcccccccCccchhhccchhhhhcccC
Q 001844          504 SVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLF  583 (1006)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (1006)
                           +              |                               .                           
T Consensus       368 -----~--------------~-------------------------------~---------------------------  370 (734)
T KOG2001|consen  368 -----D--------------L-------------------------------M---------------------------  370 (734)
T ss_pred             -----c--------------c-------------------------------c---------------------------
Confidence                 0              0                               0                           


Q ss_pred             CCCccccccccccccccccccccCCCCcccchhhccccCCCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccHH
Q 001844          584 PFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLM  663 (1006)
Q Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~s~lp~~~l~~~l~~~I~~qy~~~n~~Ll~lL~~~~~L~  663 (1006)
                                                                        .......|.+.|..||..++++|+++++|.
T Consensus       371 --------------------------------------------------e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~  400 (734)
T KOG2001|consen  371 --------------------------------------------------ESNHEEYIKKAYEFANEILLKLLFEEYDLV  400 (734)
T ss_pred             --------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence                                                              001345789999999999999999999999


Q ss_pred             HHHHHHHHHHccCCcchHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhccccCcCCCCCCceEEEEecc---------
Q 001844          664 DELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITES---------  734 (1006)
Q Consensus       664 ~hL~aLr~~fLLg~GDF~~~f~~~lf~~L~~~~~~~~~~~L~~lLq~Al~~ss~~~~~~~pd~L~~~i~~~---------  734 (1006)
                      .||+.||+||||.+|||+.+|++.+.++|.++...+.+.+|+.+|+.|++..+.....+..+.|.+.+...         
T Consensus       401 ~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~  480 (734)
T KOG2001|consen  401 GHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHI  480 (734)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999533321112225566665432         


Q ss_pred             CCCCCCCCcccccccCCCCCCCCCCCCCccceeEEEEEeeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001844          735 HGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWM  814 (1006)
Q Consensus       735 ~~~d~de~~~~~~~~~~~R~~~~~~~~~~~~d~l~L~Y~vpwPLslIlt~~~m~~Y~~IFrfLl~lKra~~~L~~~w~~l  814 (1006)
                      .++...+...  ....+|+.    ..++.|+++++++|+|||||++||++++|.+||.|||+|+.+|++++.|+.+|...
T Consensus       481 l~ie~~e~~a--ns~~dP~~----~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~  554 (734)
T KOG2001|consen  481 LAIEPEEESA--NSQADPLE----HLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSH  554 (734)
T ss_pred             HhcCcccccc--ccccCcch----hccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1222111110  01112221    14678999999999999999999999999999999999999999999999999764


Q ss_pred             HhccCCCCC-chhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 001844          815 WKGRSLATN-SHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEVHEAYLLSIQRQCFVAPD  893 (1006)
Q Consensus       815 ~k~r~~~~~-~~~~~~~~~LR~~m~~Fv~~L~~Yl~~~VIe~~w~~f~~~L~~a~dldel~~~H~~fL~~I~~~cfL~~~  893 (1006)
                      .+.|.+.+. .+..+..+.||+||++||.+|++|++.+||||+|..|+..+++++++|++++.|+.||+.|++.|+|+..
T Consensus       555 ~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~  634 (734)
T KOG2001|consen  555 SKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLS  634 (734)
T ss_pred             hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCh
Confidence            444433222 2346778899999999999999999999999999999999999999999999999999999999999976


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhhH-HHHHHHHHHHHHH-HHHHHHHHHhhhccCCchhHHHHH
Q 001844          894 KLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCE-MEVDRIEKQFDDC-IVFLLRVLSFKLNVGHFPHLADLV  971 (1006)
Q Consensus       894 ~~~~~i~~~i~~il~l~l~F~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~F~~~-~~~Li~vL~~~~~~~~~~~L~~Ll  971 (1006)
                      .   .+.+.+.++..+|+.||++.+.+......-....... .+-+.-+++|... +..+..+++.. ...-..++.+|+
T Consensus       635 ~---~llk~~~kL~~vCl~f~~~~q~~~~~~~~~~~~~~~~~~~~d~~~k~~~t~li~~leei~~~~-~~~f~~~l~~L~  710 (734)
T KOG2001|consen  635 P---LLLKSFSKLYKVCLMFCSFTQKLTQSDPTDEEKNSVGHPQFDEGRKEDDTLLISKLEEIISNA-DKNFRDCLKNLL  710 (734)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccchhhhhhhhhHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence            3   4678999999999999999987653221100000000 0112222233333 33333333322 222346899999


Q ss_pred             HHhc-cCcccccCCCCc
Q 001844          972 TRIN-YNYFYMSDSGNL  987 (1006)
Q Consensus       972 ~RLD-fN~fY~~~~~~l  987 (1006)
                      .||+ |+.|++..-.++
T Consensus       711 ~rlsk~~~~e~s~ld~~  727 (734)
T KOG2001|consen  711 QRLSKFSFFESSSLDKL  727 (734)
T ss_pred             HHccccccccHHHHHHH
Confidence            9999 888887554443

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1006
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 1e-15
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 146/368 (39%), Gaps = 28/368 (7%)
Query: 639 VYIKKQVDHIGKLILSNLMNDWRLMDE-------LAVLRAIYLLGSGDLLQHFLTVIFNK 691
           V  ++ VD I   +  +L   W+LM E       L +++  YLLG G+L Q F+    + 
Sbjct: 323 VDFEQVVDRIRSTVAEHL---WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHM 379
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
           L        + ++N   Q+S            P     +  E HG    +        S 
Sbjct: 380 LKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTI--EYHGKEHKDATQAREGPS- 436
Query: 752 PRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKAR 811
            R++ P      G   L  +YKV WPL ++     ++KYN V  +LL V+R +  L    
Sbjct: 437 -RETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCW 495
Query: 812 RWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLD 871
               + + L +N     + W +   +   VD    Y+   V  S + +L   + +    +
Sbjct: 496 ALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFE 554
Query: 872 EVIEVHEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKA 931
            +   H+ +L ++  Q F+    L   +   +N IL L   F S+      S  +  +  
Sbjct: 555 SIRLAHDHFLSNLLAQSFI----LLKPVFHCLNEILDLCHSFCSL-----VSQNLGPLDE 605
Query: 932 RCEMEVDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNLMTAP 991
           R   ++  + K F      L ++LS   N      LA L+ R++YN +Y    G L    
Sbjct: 606 RGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGGTL---- 661
Query: 992 GSEAGLGR 999
           GS    GR
Sbjct: 662 GSFGMCGR 669

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1006
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 1e-60
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 8e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  219 bits (557), Expect = 1e-60
 Identities = 71/351 (20%), Positives = 140/351 (39%), Gaps = 14/351 (3%)

Query: 637 LTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGE 696
               + +    + + +   ++ +  L+ +L +++  YLLG G+L Q F+    + L    
Sbjct: 325 FEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPP 384

Query: 697 NWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSH 756
               + ++N   Q+S        LL   + L +L         + + +        R++ 
Sbjct: 385 TAVTEHDVNVAFQQSAHKV----LLDDDNLLPLLHLTIEYHGKEHKDATQAREGPSRETS 440

Query: 757 PHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWK 816
           P      G   L  +YKV WPL ++     ++KYN V  +LL V+R +  L        +
Sbjct: 441 PREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQ 500

Query: 817 GRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMDRVYHSAWRELCEGMAAAGSLDEVIEV 876
            + L  ++ +    W +   +   VD    Y+   V  S + +L   + +    + +   
Sbjct: 501 RKHL-KSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLA 559

Query: 877 HEAYLLSIQRQCFVAPDKLWALIASRINSILGLALEFYSIQQTLSSSGAVSAIKARCEME 936
           H+ +L ++  Q F+    ++      +N IL L   F S+         +  +  R   +
Sbjct: 560 HDHFLSNLLAQSFILLKPVFHC----LNEILDLCHSFCSLVSQ-----NLGPLDERGAAQ 610

Query: 937 VDRIEKQFDDCIVFLLRVLSFKLNVGHFPHLADLVTRINYNYFYMSDSGNL 987
           +  + K F      L ++LS   N      LA L+ R++YN +Y    G L
Sbjct: 611 LSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGGTL 661
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00