Citrus Sinensis ID: 001866

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000--

MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHFTFVKNHS

cccccccccHHHHHHHHHHHHHHEEccccccccccccEEHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEHHHHHHHHHccccccccccccc

cccccccccHHHHHHHHHHHHHHEEcccccccccccEEEcHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccHHHHHHHHHHHHccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHEEccccccEEEEcccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccHHcccccccccccccEEcccHHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHcccHccccccHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHcccccccccccHHHHHcccHHHHHHHHHHHHHHEEEHHccccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccEcccHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHcccccccccccEEcHHHHHHHHHccccccEEEEccc

mattkpqrspeEIEDIILRKIFLVTLneattdadprIAYLELTAAELLSEGKDMRLSRDLMERVLVDrlsgnfpaaeppflyLINCYRRAHDELKKignmkdknLRSELEAVVKQAKKMIVSYCRIhlanpdffgsnndnnyeinnsnnkssispllpFIFAevgggidgfgnstssgsqcppgflkeffeeadfdtldPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKslvnhqwwipksvylnGRVIEmtsilgpffhvsalpdhaifksqpdvgqqcfseastrrpadllsSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINrnssrahiqveplscassgmfVNLSAVMLRLCdpfldanltkrdkidpkyvfyssrldlrsLTALHASSEEVSEWInkgnpakadgskhfsdgENQLLQsqeatsssggasepslpagrpasigggkskypfiCECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKatqgqtpssqlnLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVggfkmplpdtcpmefacmpehFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMaspkyirnpylRSKMVEVLncwmprrsgsssatatLFEGHQMSLEYLVRNLLKLYVDieftgshtqfydKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNtaewerrpaQERQERTRLFHSQENIIRIDMKLANEDVSmlaftseqivapflLPEMIERVASMLNYFLLQLvgpqrksltlkdpekyefrpkQLLKQIVCIYVHLargdtqnlfpaaissdgrsyNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEaalgdipdefldPIQVCFTCLLSSLVRTVLRTMVIVSFVAVhfdegsghftfvknhs

mattkpqrspeeiEDIILRKIFLVTLNeattdadprIAYLELTAAELlsegkdmrlsRDLMERVLVDRlsgnfpaaeppfLYLINCYRRAHDELKKignmkdknlrSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSeastrrpadllsSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDanltkrdkidpkYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATsssggasepslpAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLkatqgqtpssqlnlEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEmsntaewerrpaqerqertrlfhsqeniIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVgpqrksltlkdpEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVhfdegsghftfvknhs

MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGsnndnnyeinnsnnkssisPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGakakaaaseamdaeaaLGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHFTFVKNHS

*************EDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNN***Y**********ISPLLPFIFAEVGGGIDGFGN*******CPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCF********ADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALH**************************************************************KYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTL*****************EITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPR*******TATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEA**********************FHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAA**AMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHFTFV****

************IEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHD*****************EAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFS**************TTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQV***SCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV*******************************************************SKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAED*********************TRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELK***********************************IDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSL*LKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHF*******

**********EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLL*******************GRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGA***********AEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHFTFVKNHS

********SPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPAS*GGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHFTFVKN**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPxxxxxxxxxxxxxxxxxxxxxKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHFTFVKNHS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1002	2.2.26 [Sep-21-2011]
Q9LF41		1038	Probable ubiquitin conjug	yes	no	0.947	0.914	0.779	0.0
Q9ES00		1173	Ubiquitin conjugation fac	yes	no	0.732	0.625	0.287	7e-81
O95155		1302	Ubiquitin conjugation fac	no	no	0.732	0.563	0.293	7e-81
Q9HE05		1010	Ubiquitin conjugation fac	yes	no	0.822	0.815	0.266	2e-75
Q5R9G3		1066	Ubiquitin conjugation fac	no	no	0.865	0.813	0.261	1e-66
Q14139		1066	Ubiquitin conjugation fac	no	no	0.865	0.813	0.261	1e-66
A5PKG6		1067	Ubiquitin conjugation fac	no	no	0.862	0.809	0.257	4e-65
Q6P7A2		1066	Ubiquitin conjugation fac	no	no	0.866	0.814	0.261	4e-65
P54860		961	E4 ubiquitin-protein liga	yes	no	0.595	0.621	0.279	2e-59
Q09349		980	Probable ubiquitin conjug	yes	no	0.690	0.706	0.23	2e-42

>sp\|Q9LF41\|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1	Back alignment and function desciption

 Score = 1532 bits (3967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 749/961 (77%), Positives = 845/961 (87%), Gaps = 12/961 (1%)

Query: 1   MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
           MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1   MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59

Query: 61  MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
           MERVL+DRLSG+F  AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+ 
Sbjct: 60  MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119

Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
           VSYCRIHL NPD FG+++  +  ++N   K ++SP+LP IFAEVG G +D FG ++SSG 
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178

Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
           Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG 
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238

Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
           KSLV+H+WW+P+  Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298

Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
           PADLLSSF+TIK  M  LY  L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358

Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
           +SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F   RL L  LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418

Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
           +EWI K   A A+ +   +  E++LLQS+EATSSS  AS      G+ A      +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469

Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
           ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529

Query: 540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
           KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct: 530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589

Query: 600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
           PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct: 590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649

Query: 660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
           MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709

Query: 720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
           YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct: 710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769

Query: 780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
           EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct: 770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829

Query: 840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
           MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct: 830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889

Query: 900 RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPI 959
           RSYNEQLF+A ADVL +IGE+GRIIQEF+ELG KAKAAASEA+DAEAALG+IPDEFLDPI
Sbjct: 890 RSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPI 949

Query: 960 Q 960
           Q
Sbjct: 950 Q 950

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9ES00\|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3	Back alignment and function description

>sp\|O95155\|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1	Back alignment and function description

>sp\|Q9HE05\|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R9G3\|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2	Back alignment and function description

>sp\|Q14139\|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2	Back alignment and function description

>sp\|A5PKG6\|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1	Back alignment and function description

>sp\|Q6P7A2\|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1	Back alignment and function description

>sp\|P54860\|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3	Back alignment and function description

>sp\|Q09349\|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1002
359488959		1037	PREDICTED: probable ubiquitin conjugatio	0.944	0.912	0.816	0.0
449437816		1043	PREDICTED: probable ubiquitin conjugatio	0.947	0.909	0.811	0.0
255584323		1031	ubiquitin-protein ligase, putative [Rici	0.936	0.909	0.786	0.0
42567869		1038	putative ubiquitin conjugation factor E4	0.947	0.914	0.779	0.0
110735116		1037	UFD2 [synthetic construct]	0.946	0.914	0.779	0.0
356551046		1038	PREDICTED: probable ubiquitin conjugatio	0.944	0.911	0.778	0.0
356573130		1036	PREDICTED: probable ubiquitin conjugatio	0.945	0.914	0.781	0.0
297811677		1038	U-box domain-containing protein [Arabido	0.947	0.914	0.775	0.0
224141459		1019	predicted protein [Populus trichocarpa]	0.955	0.939	0.759	0.0
413955491		1029	hypothetical protein ZEAMMB73_905861 [Ze	0.950	0.925	0.632	0.0

>gi\|359488959\|ref\|XP_003633847.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Vitis vinifera] gi\|296082973\|emb\|CBI22274.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1609 bits (4166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/961 (81%), Positives = 851/961 (88%), Gaps = 15/961 (1%)

Query: 1   MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
           MAT KPQ SP+EIEDIIL KIFLV+LN+ + ++D RI YLE+TAAE+LSEG+ ++LSRDL
Sbjct: 1   MATKKPQLSPDEIEDIILGKIFLVSLND-SMESDSRIVYLEMTAAEILSEGRPLKLSRDL 59

Query: 61  MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
           MERVL+DRLSG+FP AEPPF YLI CYRRA DE KKI + KDKNLRSELE VVKQAKK+ 
Sbjct: 60  MERVLIDRLSGHFPGAEPPFPYLIGCYRRACDEGKKIASKKDKNLRSELELVVKQAKKLA 119

Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQ 180
           VSYCRIHL NPD F SN D+        N S++SPLLP IF+EV   +DGFG S+     
Sbjct: 120 VSYCRIHLGNPDMF-SNWDSG------ANDSAVSPLLPLIFSEVSSSVDGFGGSSIG--- 169

Query: 181 CPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVK 240
           CPPGFL+EFF ++DFD+LDPI KGLYENLR  VL VSALGNFQQPLRA LYLV FP G K
Sbjct: 170 CPPGFLEEFFRDSDFDSLDPIFKGLYENLRSIVLKVSALGNFQQPLRAFLYLVRFPFGAK 229

Query: 241 SLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRP 300
           SLV+H+WWIP+  Y+NGRVIEMTSILGPFFHVSALPD  IF+ QPDVGQQCFSEASTRRP
Sbjct: 230 SLVSHRWWIPQGAYMNGRVIEMTSILGPFFHVSALPDRGIFQGQPDVGQQCFSEASTRRP 289

Query: 301 ADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPL 360
           ADLLSSFTTIKTVM GLY  L +VLL+LLKN DTRE+VL+YLAEVIN+NSSRAHIQV+PL
Sbjct: 290 ADLLSSFTTIKTVMNGLYDGLAEVLLSLLKNADTRESVLKYLAEVINKNSSRAHIQVDPL 349

Query: 361 SCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVS 420
           SCASSGMFV+LSAVMLRLC+PFLD  LTK DKIDPKYVFYS+RLDLR LTALHASSEEV+
Sbjct: 350 SCASSGMFVSLSAVMLRLCEPFLD--LTKMDKIDPKYVFYSTRLDLRGLTALHASSEEVA 407

Query: 421 EWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPS-LPAGRPASIGGGKSKYPF 479
           EWINK +P   +GS+ +SDGE++LLQSQEATSS   A  PS L   +P  I   K+KY F
Sbjct: 408 EWINKDSPGGTEGSRQYSDGESRLLQSQEATSSGSNAHGPSFLHNAKPVPISSEKAKYSF 467

Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
           ICECFFMTARVLNLGLLKAFSDFKHLVQDISR ED+LATLKA QGQ PS +L  +I R E
Sbjct: 468 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDSLATLKAVQGQAPSPELEADIARFE 527

Query: 540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
           KEIEL SQEKLCYEAQILRDG L+QHALSFYRLM+VWLV L+GGFKMPLP TCPMEFACM
Sbjct: 528 KEIELYSQEKLCYEAQILRDGTLLQHALSFYRLMVVWLVRLIGGFKMPLPSTCPMEFACM 587

Query: 600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
           PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASP +IRNPYLR+KMVEVLNCW
Sbjct: 588 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPNFIRNPYLRAKMVEVLNCW 647

Query: 660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
           MPRRSGSS AT TLFEGH++SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 648 MPRRSGSS-ATTTLFEGHRLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 706

Query: 720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
           YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELK +EAEMSNT 
Sbjct: 707 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTV 766

Query: 780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
           EWERRPA ERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQI  PFLLPEM+ERVA+
Sbjct: 767 EWERRPATERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVAN 826

Query: 840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
           MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYVHLARGDTQ +FP AIS DG
Sbjct: 827 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVHIYVHLARGDTQKIFPTAISKDG 886

Query: 900 RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPI 959
           RSYNEQLFSAAADVL +IGEDGRIIQEF ELGA+AK AASEAMDAEAALG+IPDEFLDPI
Sbjct: 887 RSYNEQLFSAAADVLRRIGEDGRIIQEFSELGARAKVAASEAMDAEAALGEIPDEFLDPI 946

Query: 960 Q 960
           Q
Sbjct: 947 Q 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449437816\|ref\|XP_004136686.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus] gi\|449494681\|ref\|XP_004159617.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255584323\|ref\|XP_002532897.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223527331\|gb\|EEF29477.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi|42567869|ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] gi|75174048|sp|Q9LF41.1|UBE4_ARATH RecName: Full=Probable ubiquitin conjugation factor E4; AltName: Full=Plant U-box protein 1; AltName: Full=U-box domain-containing protein 1; AltName: Full=Ubiquitin-fusion degradation protein 2-like; Short=UB fusion protein 2-like gi|9755795|emb|CAC01739.1| ubiquitin-fusion degradation protein-like [Arabidopsis thaliana] gi|332004773|gb|AED92156.1| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|110735116\|gb\|ABG89128.1\| UFD2 [synthetic construct]	Back alignment and taxonomy information

>gi\|356551046\|ref\|XP_003543890.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573130\|ref\|XP_003554717.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max]	Back alignment and taxonomy information

>gi\|297811677\|ref\|XP_002873722.1\| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297319559\|gb\|EFH49981.1\| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224141459\|ref\|XP_002324089.1\| predicted protein [Populus trichocarpa] gi\|222867091\|gb\|EEF04222.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|413955491\|gb\|AFW88140.1\| hypothetical protein ZEAMMB73_905861 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1002
TAIR\|locus:2180862		1038	AT5G15400 [Arabidopsis thalian	0.985	0.950	0.738	0.0
DICTYBASE\|DDB_G0292264		1089	nosA "U box domain-containing	0.470	0.432	0.323	3.8e-104
ASPGD\|ASPL0000072757		1095	AN10556 [Emericella nidulans (	0.470	0.430	0.314	4.7e-85
ZFIN\|ZDB-GENE-020205-1		1362	ube4b "ubiquitination factor E	0.474	0.348	0.329	1.9e-79
UNIPROTKB\|F1NGY1		1182	UBE4B "Uncharacterized protein	0.499	0.423	0.314	1.9e-78
UNIPROTKB\|O95155		1302	UBE4B "Ubiquitin conjugation f	0.499	0.384	0.318	3.7e-78
RGD\|1304738		1172	Ube4b "ubiquitination factor E	0.499	0.426	0.314	9.2e-78
POMBASE\|SPAC20H4.10		1010	ufd2 "ubiquitin-protein ligase	0.479	0.475	0.288	2.1e-77
UNIPROTKB\|J9P2H4		1173	UBE4B "Uncharacterized protein	0.499	0.426	0.316	3.1e-77
UNIPROTKB\|A6QNS2		1362	UBE4B "UBE4B protein" [Bos tau	0.499	0.367	0.318	7.1e-77

TAIR\|locus:2180862 AT5G15400 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3749 (1324.8 bits), Expect = 0., P = 0.
 Identities = 740/1002 (73%), Positives = 831/1002 (82%)

Query:     1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
             MAT+KPQRSP EIEDIILRKIF VTL E+T D+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct:     1 MATSKPQRSPAEIEDIILRKIFYVTLTEST-DSDPRIVYLEMTAAEILSEGKELLLSRDL 59

Query:    61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
             MERVL+DRLSG+F  AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+ 
Sbjct:    60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119

Query:   121 VSYCRIHLANPDFFGXXXXXXXXXXXXXXXXXXXPLLPFIFAEVGGG-IDGFGNSTSSGS 179
             VSYCRIHL NPD FG                   P+LP IFAEVG G +D FG S SSG 
Sbjct:   120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGAS-SSGV 178

Query:   180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
             Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG 
Sbjct:   179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238

Query:   240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
             KSLV+H+WW+P+  Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct:   239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298

Query:   300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
             PADLLSSF+TIK  M  LY  L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct:   299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358

Query:   360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
             +SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F   RL L  LTALHASSEEV
Sbjct:   359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418

Query:   420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
             +EWI K   A A+ +   +  E++LLQS+EATSSS  AS      G+ A      +KY F
Sbjct:   419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469

Query:   480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
             ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct:   470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529

Query:   540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
             KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct:   530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589

Query:   600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
             PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct:   590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649

Query:   660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
             MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct:   650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709

Query:   720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
             YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct:   710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769

Query:   780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
             EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct:   770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829

Query:   840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
             MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct:   830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889

Query:   900 RSYNEQLFSAAADVLWKIGEDGRIIQEFIELGXXXXXXXXXXXXXXXXLGDIPDEFLDPI 959
             RSYNEQLF+A ADVL +IGE+GRIIQEF+ELG                LG+IPDEFLDPI
Sbjct:   890 RSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPI 949

Query:   960 QVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGSGHFTFVKNH 1001
             Q  +T +   ++    R  V    +  H      H  F + H
Sbjct:   950 Q--YTLMRDPVILPSSRITVDRPIIQRHL-LSDNHDPFNRAH 988

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0292264 nosA "U box domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000072757 AN10556 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020205-1 ube4b "ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NGY1 UBE4B "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|O95155 UBE4B "Ubiquitin conjugation factor E4 B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1304738 Ube4b "ubiquitination factor E4B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

POMBASE\|SPAC20H4.10 ufd2 "ubiquitin-protein ligase E4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P2H4 UBE4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QNS2 UBE4B "UBE4B protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF41	UBE4_ARATH	No assigned EC number	0.7793	0.9471	0.9142	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021032001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (995 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1002
pfam10408		625	pfam10408, Ufd2P_core, Ubiquitin elongating factor	0.0
COG5113		929	COG5113, UFD2, Ubiquitin fusion degradation protei	3e-81

>gnl\|CDD\|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core	Back alignment and domain information

 Score =  620 bits (1602), Expect = 0.0
 Identities = 247/685 (36%), Positives = 389/685 (56%), Gaps = 76/685 (11%)

Query: 266 LGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVL 325
           LGP   +S LPD       P+V ++ FS+ ++R    + +  ++++  +  L  +L  + 
Sbjct: 1   LGPLLSLSPLPD-----DFPEVAEKYFSDPNSRSKQQINALISSLRQTLSNLIDNLFQIF 55

Query: 326 LALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLD 384
            +LL+ + ++RE  L + A++IN N  R  +QV+P + +S G  +NL+AV+LRLC PFLD
Sbjct: 56  KSLLRASPESREKTLSWFAKIINLNHKRRKMQVDPKTLSSDGFMLNLTAVLLRLCQPFLD 115

Query: 385 ANLTKRDKIDPKYVFY--SSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGEN 442
              +K DKIDP Y+    S R+D++  T L+A  EE  E+ ++ +   A           
Sbjct: 116 PTSSKIDKIDPDYLLRKLSKRIDIKEETRLNADEEEADEFYSEKSEEGAKN--------- 166

Query: 443 QLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDF 502
                                               FI ECFF+T R L+LG+      +
Sbjct: 167 ------------------------------------FITECFFLTLRALHLGIGPLIEKY 190

Query: 503 KHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDL 562
           K L++++ R +D L  L+ ++          ++ R+EK++E+ S EKL  E  +L D  L
Sbjct: 191 KRLLRELKRLQDELEELEQSRSN------WAQLKRLEKQLEILSAEKLSLEGFLL-DPSL 243

Query: 563 IQHALSFYRLMIVWLVDLV---------GGFKMPLPDTCPMEFACMPEHFVEDAMELLIF 613
           +Q  L F   + VWL+ +             K+PLP   P  F  +PE F+ED ++ ++F
Sbjct: 244 LQRLLQFLSFVAVWLLRVADPKNLYPEGQKLKLPLPKKVPEAFKYLPEFFIEDIVDFILF 303

Query: 614 ASR-IPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMP-RRSGSSSATA 671
                P  LD + LD  + F I+FM SP+YI+NP+L++K+VE+L   +P   +      +
Sbjct: 304 LFSNSPLVLDYIKLDSIIEFCIIFMGSPEYIKNPHLKAKLVEILFIGLPPLDNSQKGFLS 363

Query: 672 TLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAW 731
            +FEGH ++ E+L+  LLK Y+D+E TG+ TQFYDKFNIR+ I+++LEYLW+ PS+R   
Sbjct: 364 DIFEGHPLAKEHLLPALLKFYIDVEKTGASTQFYDKFNIRYYISQILEYLWKNPSYRQQL 423

Query: 732 RQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQE 791
           R+ +KE     ++ F+N L+ND+ YLLDESL+ + E+K ++ E+ + AEWE    +ER+E
Sbjct: 424 RKESKENND-FFVRFINLLLNDATYLLDESLSYLKEIKQLQKELQDRAEWESLSQEEREE 482

Query: 792 RTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGP 851
           R       E   +  ++LANE V +L   + +I  PFL PE+++R+A+MLNY L QLVGP
Sbjct: 483 RESELRQLERQAKSYLQLANETVKLLKLLTSEIPKPFLSPEIVDRLAAMLNYNLDQLVGP 542

Query: 852 QRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAA 911
           +  +L +K+PEKY F PKQLL  IV IY++L+R D    F  A++ DGRSY+ +LF  A 
Sbjct: 543 KCSNLKVKNPEKYGFDPKQLLSDIVDIYLNLSRSDE---FIEAVARDGRSYSPELFEKAE 599

Query: 912 DVLWKIG-EDGRIIQEFIELGAKAK 935
            +L +IG +    I++F EL  K +
Sbjct: 600 RILRRIGLKSEEDIEKFEELANKLE 624

This is the most conserved part of the core region of Ufd2P ubiquitin elongating factor or E4, running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C-terminus, pfam04564, which has ligase activity. Length = 625

>gnl\|CDD\|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1002
COG5113		929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	100.0
KOG2042		943	consensus Ubiquitin fusion degradation protein-2 [	100.0
PF10408		629	Ufd2P_core: Ubiquitin elongating factor core; Inte	100.0
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.2
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.16

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.1e-161  Score=1348.51  Aligned_cols=871  Identities=21%  Similarity=0.309  Sum_probs=775.3

Q ss_pred             HHHHHHHHHHhhhhhccCCcCCCCCCeeehhhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChhhHHHHHHH-H
Q 001866           11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYR-R   89 (1002)
Q Consensus        11 ~~~~~~~l~~if~vtl~~~~~~~~~~~~~L~~~~~el~~~~~~~~l~~d~ld~~l~~rl~~~~~~~~~~~~YL~~c~~-R   89 (1002)
                      .+|.+++-..+++||.+|+    +.+-++|  +.+++..+|.+  |..+.+|.+|+.+|+...   ..+|.||.+||+ +
T Consensus         3 ~~~M~~ie~~~l~it~~p~----D~~~y~l--fk~~e~~~gS~--l~~n~~d~~LL~~l~~~~---nn~fsYl~~s~~fl   71 (929)
T COG5113           3 YPGMNRIELYELFITGMPA----DMDPYEL--FKEAECIRGSY--LTNNSSDNILLTLLPRYK---NNTFSYLQESAKFL   71 (929)
T ss_pred             CcccchhhhhhhhcccCcc----ccchhhh--cchhhccccCc--cccccHHHHHHHHccccC---CCchHHHHHHHHHH
Confidence            4699999989999999998    4455777  45555566664  677799999999999863   788999999999 5


Q ss_pred             HHHHHHhhcCCCccchhhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCC
Q 001866           90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID  169 (1002)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~  169 (1002)
                      .+..+|.. +  .+.......+-++.|.+++++|+|.+..+||-|....               ..++.-|...      
T Consensus        72 ~q~~kri~-k--n~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~FN~e~---------------i~~ieg~~~~------  127 (929)
T COG5113          72 IQTIKRIV-K--NPEMAGSAHSPVALIPLLTNTYGGSVFDVMECFNSEK---------------ISEIEGMARK------  127 (929)
T ss_pred             HHHHHHhc-C--CccccccccchHHHHHHHHhhccceEeehHhhcchhH---------------HHHHHHHHHh------
Confidence            55554443 3  2333345566889999999999999999999993211               1112122221      


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHh--hccCChHHHHHHHHHHHHHHhhccCcccccchHHHHHHHhhCChhHHHHhhcCCC
Q 001866          170 GFGNSTSSGSQCPPGFLKEFFEE--ADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQW  247 (1002)
Q Consensus       170 ~~~~s~~~~~~~~~~Fl~eli~~--~~~d~~~~if~~i~~~l~~~~~~~s~~~~~~~~l~~l~~L~~~k~ia~~l~~~~~  247 (1002)
                             -  .+|-.|+.+++.|  ++..+++..|.++++.+....+.+........++.+...|++.||||.++.+.|.
T Consensus       128 -------~--~~p~~fls~f~qr~l~e~~nld~lF~~~LE~l~~~~g~~~~dtV~~NVm~I~~~lv~~kPia~v~~k~p~  198 (929)
T COG5113         128 -------M--LLPMIFLSSFKQRQLDEASNLDNLFTSALEALTGLHGVLEEDTVLKNVMEIYWGLVNTKPIADVILKFPI  198 (929)
T ss_pred             -------c--ccHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhcccchHHHHHHHHHHHHHHHhcCccHHHHhhcCcc
Confidence                   1  1577999999999  4666699999999999988777666533345589999999999999999999999


Q ss_pred             CCCCccCCCcchhhhhcccccccccCCCCCCccccCCChhhhhccCCCcCCChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001866          248 WIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLA  327 (1002)
Q Consensus       248 f~p~~~~~~G~~~E~~SlLGp~l~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~slr~~l~~~~~~L~~I~~~  327 (1002)
                      |.|..   .+.+||.+|+|||+.++|++        .-+||-.+|++...|+.+.+..+..+||.++..+++.||+|+++
T Consensus       199 ~~~t~---~p~~fe~kt~lG~i~sls~~--------~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~  267 (929)
T COG5113         199 YSGTN---FPCGFEYKTLLGFIESLSYK--------KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHS  267 (929)
T ss_pred             cCCCC---CCCCCcceeecccccccchh--------hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99864   33479999999999999999        45788999999999999999999999999999999999999999


Q ss_pred             Hhc-ChhhHHHHHHHHHHHHHhchhhhhcccCCCccCChhhHHHHHHHHHHhhhhhcCCCccCcCccCccCcccCCCcCC
Q 001866          328 LLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDL  406 (1002)
Q Consensus       328 Llr-~~~sRe~vL~w~a~vl~~N~~R~k~~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~~~vdi  406 (1002)
                      |+| |.+.|+.+++|||+|+|+||+|++.+++.+...|||||.|++.||.||++||+|.+++|||+||..|++ ++|||+
T Consensus       268 lvr~S~~lr~~~~~yfa~v~n~nh~R~~~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~YFn-NP~vDi  346 (929)
T COG5113         268 LVRSSKELRANFMKYFAKVINVNHERSKTIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIYFN-NPRVDI  346 (929)
T ss_pred             HHhccHHHHHHHHHHHHHHhccchhhccccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHhhc-CCcccc
Confidence            999 789999999999999999999999999999999999999999999999999999999999999999999 779999


Q ss_pred             CccccccCCHHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHH
Q 001866          407 RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFM  486 (1002)
Q Consensus       407 ~~eTri~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFItecFFL  486 (1002)
                      ++|||+|+|+.+++.||.+  |                                            .++.+||||+||||
T Consensus       347 k~ETklN~d~k~~dsFy~K--~--------------------------------------------Ae~s~NFISD~FFl  380 (929)
T COG5113         347 KEETKLNVDEKSLDSFYTK--P--------------------------------------------AEGSNNFISDIFFL  380 (929)
T ss_pred             ccchhcchhhhhhhccccC--c--------------------------------------------cccCCccchhhHHh
Confidence            9999999999999999963  1                                            46688999999999


Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHH
Q 001866          487 TARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQG-QTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQH  565 (1002)
Q Consensus       487 T~~~lhlG~~~~~~~~~~l~r~i~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~  565 (1002)
                      ++..+|||+++++.--+++.+.|+.++++++.-..... .-...++.+++.|+++.++...+...|+++ .|...++..+
T Consensus       381 ~lt~~HyGv~~tf~~~ek~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~al~g-fl~~tsl~~~  459 (929)
T COG5113         381 YLTKIHYGVNATFTSCEKFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMSALNG-FLFMTSLFAD  459 (929)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHHHHHH-HHHHhhhhhh
Confidence            99999999999999999999999988887765332111 111334678899999999999999999999 8999999999


Q ss_pred             HHHHHHHHHHHHHHHhcC--------CcCCCCCCCCcccccchhHHHHhHHHHHHHHhhc--CccccccchHHHHHHHHH
Q 001866          566 ALSFYRLMIVWLVDLVGG--------FKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMNFIIM  635 (1002)
Q Consensus       566 ~~~F~~~~~~wL~~l~~~--------~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~--p~~l~~~~~~~l~~f~i~  635 (1002)
                      .+.|.++++.||.|+++|        .++|+-+.+|.+|+|+|||+||++++|..++.+.  .+++- ..++++++||++
T Consensus       460 ~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif~-~~L~~l~Ef~~~  538 (929)
T COG5113         460 EFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIFK-KELEPLCEFVKI  538 (929)
T ss_pred             ccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchhh-ccccchhhhhhh
Confidence            999999999999999987        4567778899999999999999999999999887  44433 338999999999


Q ss_pred             HhCCCCCccChhhHhhHHHHHH-hhcCCCCCCchhhHHhhhcchhhHHHHHHHHHHHhhhhhccCCCccchhhhhhhhhH
Q 001866          636 FMASPKYIRNPYLRSKMVEVLN-CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNI  714 (1002)
Q Consensus       636 ~l~s~~~ikNPhLraklvevL~-~~~p~~~~~~~~~~~lf~~~~la~~~L~~aLm~fYidvE~TG~~~qFYdKFn~R~~I  714 (1002)
                      ++++|++||||||++|++++|+ +.+|....++|.+.++|...+++.++|+||||.|||+||+||+|+|||||||+||.|
T Consensus       539 vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqStqfydkfNirf~i  618 (929)
T COG5113         539 VLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQSTQFYDKFNIRFII  618 (929)
T ss_pred             hcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcccceeeeccceeeh
Confidence            9999999999999999999997 577776666789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCChhhHHHHHHHHHhhccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHH
Q 001866          715 AELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTR  794 (1002)
Q Consensus       715 ~~Ilk~LW~~~~yr~~l~~~a~~~~~~~FvrFvnlLiND~tfLLDE~L~~L~~I~~~q~e~~d~~~w~~l~~eer~e~~~  794 (1002)
                      +.+++.+|+.|.|.+++.++.+.| -++||||...|+||+||||||++.+|.++|++|.+++|....+ ...|+-+|.+.
T Consensus       619 c~~~~~~yK~Psy~~~L~~~~~tN-~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s-n~~e~~~elq~  696 (929)
T COG5113         619 CMMKDFEYKQPSYSEGLSSIKDTN-LPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS-NISERIGELQK  696 (929)
T ss_pred             hHHHHHHhcCchhhhhhhhhhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC-chhhHHHHHHH
Confidence            999999999999999999998875 8999999999999999999999999999999999999876544 44566788899


Q ss_pred             HHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhhcCccccCccccCCcccCCChHHHHHH
Q 001866          795 LFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQ  874 (1002)
Q Consensus       795 ~l~~~er~ars~~~La~etv~ml~~~T~~i~~~Fl~peivdRLA~MLNynL~~LvGPk~~~LKVknpekY~F~Pk~LL~~  874 (1002)
                      .++.++||||++++|++++++||..++++||++|+.||||+|||+||||||+.||||||.+||||||++|+|+||.||+.
T Consensus       697 ~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~~  776 (929)
T COG5113         697 SLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLRR  776 (929)
T ss_pred             HHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccchhhHhhhhCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001866          875 IVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE-DGRIIQEFIELGAKAKAAASEAMDAEAALGDIPD  953 (1002)
Q Consensus       875 i~~IYlnL~~~~~~~~F~~AVa~DgRSY~~elF~~A~~il~r~~l-~~~~i~~f~~l~~kv~~~~~~~~~~E~~l~diPD  953 (1002)
                      ++++|+||+.   +++||.|||.|||||+.++|.+|++||.++.+ ++.+|+++.+|++|+|+.+..++.||||+|||||
T Consensus       777 ~~~VYinl~~---es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPD  853 (929)
T COG5113         777 MVMVYINLRS---ESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPD  853 (929)
T ss_pred             HHHHhhhhcc---hHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCch
Confidence            9999999995   46899999999999999999999999999999 9999999999999999999888899999999999


Q ss_pred             cccChhHHHHHH---hhccCcceehhhhHHHhhhhhcccC
Q 001866          954 EFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAVHFDE  990 (1002)
Q Consensus       954 EFlDPLM~tlM~---~LPsS~~~vDR~ti~~~~~~~~~~~  990 (1002)
                      |||||||+|+|+   +||+|+++||||||++||+.--.||
T Consensus       854 eFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDP  893 (929)
T COG5113         854 EFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDP  893 (929)
T ss_pred             hhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCc
Confidence            999999999999   9999999999999999999888887

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1002
2qiz_A		982	Structure Of The Yeast U-Box-Containing Ubiquitin L		1e-58
3m62_A		968	Crystal Structure Of Ufd2 In Complex With The Ubiqu		2e-58
2qj0_A		982	Structure Of The Yeast U-Box-Containing Ubiquitin L		1e-55

>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982

Back alignment and structure

Iteration: 1

Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 189/698 (27%), Positives = 317/698 (45%), Gaps = 101/698 (14%) Query: 333 DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392 ++R +++ Y A + N+N R +S+G N++ +++R PFLD + K DK Sbjct: 298 NSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDK 357 Query: 393 IDPKYVFYSSR-LDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451 ID Y S +DL T L++ +E + +K N AD Sbjct: 358 IDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK-NRKTAD------------------- 397 Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGL-------------LKA 498 SK FI +CFF+T L+ GL +KA Sbjct: 398 -----------------------SKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKA 434 Query: 499 FSDFKHLVQDISRAEDTLATLKATQ--------GQTPSSQLNLEITRIEKEIELSSQEKL 550 + V+ I+ D A Q T S + L+ + ++L + + Sbjct: 435 LKEEIEKVKKIAANHDVFARFITAQLSKMEKALKTTESLRFALQGFFAHRSLQLEVFDFI 494 Query: 551 CYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPD----TCPMEFACMPEHFVED 606 C + L +H F ++ + + D +G + D P+ F PE VE Sbjct: 495 CGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEG 554 Query: 607 AMELLIFASRIPKA--LDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRR 663 + ++ S+ + L F+ F M + P+ + NP+L+ K+V++L+ MP Sbjct: 555 PVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLT 614 Query: 664 SGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW- 722 S +FE ++ + L+ LL YV +E TGS +QFYDKFN R++I+ +LE L+ Sbjct: 615 DNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYY 674 Query: 723 QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAE 780 ++PS++N W+ + ++ F+ ++ND +LLDE L+ + E+ I+ E+ N A Sbjct: 675 KIPSYKNQLIWQS---QNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRAR 731 Query: 781 WE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 838 R ++++ +TRL S + LA++ + + S+ I A F+ PE++ R+A Sbjct: 732 GAPPTREEEDKELQTRL-ASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLA 790 Query: 839 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSD 898 SMLNY L LVGP+ L +KDP+ Y F PK LLK + +Y++L+ Q+ F +A++ D Sbjct: 791 SMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKD 847 Query: 899 GRSYNEQLFSAAADVLWKIGEDGRIIQEFIE----LGXXXXXXXXXXXXXXXXLGDIPDE 954 RS+N LF A D+L + + G EFIE GD+PDE Sbjct: 848 ERSFNRNLFVRAVDILGR--KTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDE 905 Query: 955 FLDPIQVCFTCLLSSLVRTVLRTMVIVSFVAVHFDEGS 992 FLDP L+ T+++ VI+ ++ D + Sbjct: 906 FLDP-----------LMYTIMKDPVILPASKMNIDRST 932

PyMOL of 2qiz

>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Rad23 Length = 968

Back alignment and structure

>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1002
3m62_A		968	Ubiquitin conjugation factor E4; armadillo-like re	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	3e-04

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968	Back alignment and structure

 Score =  682 bits (1760), Expect = 0.0
 Identities = 216/993 (21%), Positives = 397/993 (39%), Gaps = 140/993 (14%)

Query: 9   SPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDR 68
           SPE      +  I  +T + +            L  +E + +G    L  D ++ +L+ +
Sbjct: 2   SPEFRSMTAIEDILQITTDPS------DTRGYSLLKSEEVPQGS--TLGVDFIDTLLLYQ 53

Query: 69  LSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHL 128
           L+ N    + PF YL +C+RR   + +     K+K     L +  ++  ++++ Y  + L
Sbjct: 54  LTEN-EKLDKPFEYLNDCFRRNQQQKRI---TKNKPNAESLHSTFQEIDRLVIGYGVVAL 109

Query: 129 ANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKE 188
              +F  +                    +  I + V                    FL +
Sbjct: 110 QIENFCMNGA--------------FINYITGIVSNVN---------------SYTDFLSQ 140

Query: 189 F-----FEEADFDTLDPILKGLYENLRGSVLNVSALGN--FQQPLRALLYLVSFPVGVKS 241
                  E    D L+ +   L E     V +     +  +   L      V+F    + 
Sbjct: 141 IIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEI 200

Query: 242 LVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPA 301
                 +         +  E  +ILGP   +S +           V  + + +   R   
Sbjct: 201 FTKIDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQ 251

Query: 302 DLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPL 360
                  +++   + +   L  ++  L++ + ++R +++ Y A + N+N  R        
Sbjct: 252 QTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFK 311

Query: 361 SCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSS-RLDLRSLTALHASSEEV 419
             +S+G   N++ +++R   PFLD +  K DKID  Y    S  +DL   T L++  +E 
Sbjct: 312 ELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGETRLNSDFKEA 371

Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
             + +K                                                 SK  F
Sbjct: 372 DAFYDKNRKTA-------------------------------------------DSKPNF 388

Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTP--SSQLNLEITR 537
           I +CFF+T   L+ GL    S  + +  +I   ++ +  +K         +  +  ++++
Sbjct: 389 ISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQLSK 448

Query: 538 IEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKM----------- 586
           +EK ++ +   +   +        L      F      +L+ +V                
Sbjct: 449 MEKALKTTESLRFALQGFFA-HRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLI 507

Query: 587 -------------PLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMN 631
                         L    P+ F   PE  VE  +   ++ S+           L  F+ 
Sbjct: 508 PDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVE 567

Query: 632 FIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRRSGSSSATATLFEGHQMSLEYLVRNLLK 690
           F  M +  P+ + NP+L+ K+V++L+   MP    S      +FE  ++  + L+  LL 
Sbjct: 568 FTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLD 627

Query: 691 LYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNF 749
            YV +E TGS +QFYDKFN R++I+ +LE L+ ++PS++N     + +     ++ F+  
Sbjct: 628 FYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQS-QNNADFFVRFVAR 686

Query: 750 LINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA-QERQERTRLFHSQENIIRIDMK 808
           ++ND  +LLDE L+ + E+  I+ E+ N A        +E +E      S     +    
Sbjct: 687 MLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCG 746

Query: 809 LANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRP 868
           LA++ + +    S+ I A F+ PE++ R+ASMLNY L  LVGP+   L +KDP+ Y F P
Sbjct: 747 LADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNP 806

Query: 869 KQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKI--GEDGRIIQE 926
           K LLK +  +Y++L+       F +A++ D RS+N  LF  A D+L +         I++
Sbjct: 807 KDLLKALTTVYINLSEQSE---FISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEK 863

Query: 927 FIELGAKAKAAASEAMDAEAALGDIPDEFLDPI 959
            +    KA+       + +   GD+PDEFLDP+
Sbjct: 864 LLNFANKAEEQRKADEEEDLEYGDVPDEFLDPL 896

PyMOL of 3m62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1002
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.16
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	87.58
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	80.15

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=1.8e-05  Score=51.05  Aligned_cols=51  Identities=31%  Similarity=0.408  Sum_probs=43.4

Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHH---HHCCCCCEEHHHHHHHHHHHHCCCCCCC
Q ss_conf             99875099997465715789977---5135862100456997655520158875
Q 001866          943 DAEAALGDIPDEFLDPIQVCFTC---LLSSLVRTVLRTMVIVSFVAVHFDEGSG  993 (1002)
Q Consensus       943 ~~E~~lgdiPDEFlDPLM~tLM~---~Lp~S~~~vDR~ti~~~~~~~~~~~~~~  993 (1002)
                      ++|++++||||||+|||..+||+   ++|.++.+.+|++|.+++.+-+.+--.+
T Consensus        11 ~~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~   64 (98)
T d1wgma_          11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNR   64 (98)
T ss_dssp             SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTC
T ss_pred             HHHHHHCCCCHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             067651599077488673468877776235532014999999987068766555

PyMOL of d1wgma_

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure