Citrus Sinensis ID: 001875

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-
MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
cccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEEEEEcccccEEEEEccccEEEEEEEccEEcEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccccccEEEEEEEEEEEccccEEEEEccEEEcccccccccccccccccccccEEEEEEEEEEccEEEEccccccccEEcccccccEEEEEEccccccHHHHEEEEEcccEEEcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccEEHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHccccccccEEEEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccccHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccc
cccccccccccccccccccEEEEEEEEEEEcccccEEEEEEEEEEEEccccEEEEEccEEEEEEEEEcccccEEEEcccccEEEEcccccccEEcccHHHHHHHHccccccccccccccccEcccccccccccccccEEccccccccccccccEEEEEEEEEEcccccccEEEEEEEEcccccccHHcccccccccccccEEEEEEEEcccEEEEEcccEEEEEEccccccEEEEEEEccccccHEEEEEEEcccEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHcccEEEEEEEccccccHHHccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccEEEEcccccccEEEEEccccccEEEEEccccHHHHHHHccccccccccHHHHHHHcccHHHHHEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccEcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
makprkpkneetkvensgavVRHQKLCLSIDmekhqiygyteleiavpdigivglhaenlgiesvlvdgeptefeyyphnhqnvenekrwrsmvsspssaADAAAAVYISALERElvpnllincckpfkglTDQIEQMNlenkldssaepkqnvKLVRIDYWVEKVEVGihfdgnalhtdnqirrarcwfpciddttqrccydlefTVSQNLIAVSAGSLLYQvlskddpprktyvyrldvpvsaKWITLavapfevlpdhhqslmshiclpanvskIHNTVEFFHNAFSHYEtyldakfpfgsykqvflapemavssstfgAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFgvyitpelpndewllDGLAGFLTDSFIKKFLGNNEARYRRYKAncavckaddsgatalsssasckdlygtqcigifgkirSCKSVAILQMLEKQMGSNFFRKILQNIISRaqgaspvrtlsTKEFRHFANKvgnlerpflkeffprwvgtcgcpvlrmgfsynkrKNIVELAVLRdctvkpdsrtpvlssntdsenrdgdigwpgmmSIRVHeldgmydhpilpmagdAWQLLEIQCHSKLAARralkpkkgskpdgcddngdavagldmrssmesplswiradpeMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKsrrfdeniglprpndfrdfsEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKyndnngnpysDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFdrlmpsyngilTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSveeepslrgqvKLGIHAMRICqikggsdsnhevDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
makprkpkneetkvensgavvrHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLEnkldssaepkqnvKLVRIDYWVEKVEVGIHfdgnalhtdnqiRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVlrdctvkpdsrtpvlssntdsenrdgdigwpGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRalkpkkgskpdgcddnGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALAntaseetdwAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIkggsdsnheVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRsmvsspssaadaaaavyisaLERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSklaarralkpkkGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVaqaqaiaalealPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
******************AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPH***********************AAAAVYISALERELVPNLLINCCKPFKGLTDQI*****************NVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTV*********************IGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLA************************************SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWV*
*******************VVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQ**************EPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLL****SKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDS*************LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLR*C*VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARR*********PDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQ**************TLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
****************SGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEK****************AAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPD**************RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAAR*************CDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
***************NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
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MAKPRKPKNEETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRWVYCFLSFVDWVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1001 2.2.26 [Sep-21-2011]
Q32PW3 1191 Transcription initiation yes no 0.823 0.691 0.284 2e-85
Q6P1X5 1199 Transcription initiation yes no 0.819 0.683 0.276 3e-84
Q5ZIT8 1168 Transcription initiation yes no 0.819 0.702 0.278 5e-84
Q8C176 1104 Transcription initiation yes no 0.818 0.741 0.277 3e-83
Q24325 1221 Transcription initiation yes no 0.831 0.681 0.272 1e-82
P871211172 Transcription initiation yes no 0.793 0.677 0.244 6e-63
P23255 1407 Transcription initiation yes no 0.509 0.362 0.274 5e-48
Q97VF1784 Probable aminopeptidase 1 yes no 0.334 0.427 0.209 1e-10
P95928785 Leucyl aminopeptidase OS= no no 0.325 0.415 0.224 2e-10
Q96ZT9786 Probable aminopeptidase 1 yes no 0.331 0.422 0.214 4e-10
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2 Back     alignment and function desciption
 Score =  317 bits (813), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 263/925 (28%), Positives = 440/925 (47%), Gaps = 101/925 (10%)

Query: 21  VRHQKLCLS-IDMEKHQIYGYTELEI--AVPDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
           + HQ +C++ ++ ++  + GY EL I   V ++  + L+++   I  V V+     F Y 
Sbjct: 17  LTHQVVCINNVNFQRKSVIGYVELTIFPTVVNLNRIKLNSKQCRIYRVRVNDLEAPFIYN 76

Query: 78  PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALEREL---VPNLLINCCKPFKGLTDQ 134
               +   +E + R++    S+   A +AV   A   EL   VP+ L       +G   +
Sbjct: 77  DPTLEVCHHESKQRNLNYFSSAYTAAVSAVDPDAGNGELSIKVPSELWK-----QGDEMK 131

Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCID 194
           + ++ +E  LD   +PK  +  V  D      E   H         NQ   +R WFPC+D
Sbjct: 132 VMKVYIEFSLD---QPKGGLHFVVPDVEGNMAERAAH----VFSFGNQ-NSSRFWFPCVD 183

Query: 195 DTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254
             ++ C + LEFTV  +++AVS G L+  V + D   +KTY Y L +P +A  I++AV P
Sbjct: 184 SYSELCTWKLEFTVDASMVAVSCGDLVETVYTHDMR-KKTYHYMLPIPTAAPNISMAVGP 242

Query: 255 FEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM 314
           FE+L D +   ++H CLP  +  + +T+ + H  F  YE  L  ++P+  +K VF+  E 
Sbjct: 243 FEILVDPYMHEVTHFCLPQLLPLLKHTMSYLHEIFEFYEEILTCRYPYSCFKTVFVD-EA 301

Query: 315 AVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLD 374
            V  S++ A+M IFS+ +L+   +IDQ   T   L+ ALA+Q+FG +I+     DEW+L 
Sbjct: 302 YVQVSSY-ASMSIFSTNLLHSGLIIDQTPMTRSFLAQALAQQFFGCFISRMSWADEWVLK 360

Query: 375 GLAGFLTDSFIKKFLGNNEARY-----------RRYKANCAVCKADDSGATALSSSASCK 423
           G++G++   ++KK  G NE R+              K    +     SG     +     
Sbjct: 361 GISGYIYGLYLKKTFGVNEYRHWIKEELDKIVEYELKIGGVLLHPTFSGGKEKDNPTPHL 420

Query: 424 DLYGTQCIGI---FGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVR---- 476
                    +   + K+  CK+  +++++E ++   F  ++   ++S A  AS  +    
Sbjct: 421 HFSIKHPHTLSWEYYKMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKYQSH 480

Query: 477 -----TLSTKEF-RHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELA 530
                 +ST  F +  +N  G    P +K+    WV   G       F++N+++N++EL 
Sbjct: 481 MWSQMLVSTSGFLKSISNVSGKDIGPLIKQ----WVDQSGVVKFFGSFAFNRKRNVLELE 536

Query: 531 VLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQL 590
           + +D T                    G   + G + + V ELDG ++H  L +  ++ + 
Sbjct: 537 IRQDYT------------------SSGTQKYVGPIKVTVQELDGSFNH-TLQIEENSLKH 577

Query: 591 LEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS-SMESPLSWIRADPEMEYLA 649
            +I CHSK    +  K            NG+ V  +D+ +   +SPL WIR DP+M  L 
Sbjct: 578 -DIPCHSKSRRNKKKKIPLM--------NGEEV-DMDLSAMDADSPLLWIRIDPDMSILR 627

Query: 650 EIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRI 709
           ++ F Q   MW  QL  + DVVAQ +AI ALE  P  +      L + L   + F++VR+
Sbjct: 628 KVEFEQADFMWQYQLRYERDVVAQEEAILALEKFP--TPPSRRALTDILEQDQCFYKVRM 685

Query: 710 EAAYALANTA-SEETDWAGLLHLVKFYKSRRF--DENIGLPRPNDFRDFSEYFVLEAIPH 766
            A + LA  A S  + W G   +   + +R F       + + N+F  F  YF+ + IP 
Sbjct: 686 HACFCLAKIANSMVSTWTGPPAMKSLF-TRMFCCKSCPNIVKTNNFISFQSYFLQKTIPV 744

Query: 767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLA----ALVQSVGELEFGQQS 822
           A+A +R   N  PRE + F+L L+KYNDN  N +SD ++ A    AL  S+         
Sbjct: 745 AMAQLRDVQNLCPREVLSFILDLIKYNDNRKNKFSDNYYRAELIDALTNSLTPAISINNE 804

Query: 823 ILFLSSL-------LKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVV 875
           +  + SL       L+ I R L  ++L+PSY   +T+SC+R +    L+ +G I  D   
Sbjct: 805 VRTVDSLNADVRLILEEITRFLNMEKLLPSYRNTITVSCLRAIRM--LQKNGHIPSDPT- 861

Query: 876 KLIKPFRDFNTIWQVRVEASRALLD 900
            L K + ++     VR+ A  A++D
Sbjct: 862 -LFKSYAEYGHFVDVRIAALEAVID 885
Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.
Danio rerio (taxid: 7955)
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 Back     alignment and function description
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus GN=TAF2 PE=2 SV=1 Back     alignment and function description
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus GN=Taf2 PE=2 SV=2 Back     alignment and function description
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2 Back     alignment and function description
>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf2 PE=3 SV=3 Back     alignment and function description
>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3 Back     alignment and function description
>sp|Q97VF1|APE1_SULSO Probable aminopeptidase 1 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape1 PE=3 SV=1 Back     alignment and function description
>sp|P95928|APE2_SULSO Leucyl aminopeptidase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ape2 PE=1 SV=1 Back     alignment and function description
>sp|Q96ZT9|APE1_SULTO Probable aminopeptidase 1 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=ape1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1001
225455842 1345 PREDICTED: transcription initiation fact 0.984 0.732 0.818 0.0
225455844 1325 PREDICTED: transcription initiation fact 0.964 0.728 0.801 0.0
224132980 1359 predicted protein [Populus trichocarpa] 0.983 0.724 0.795 0.0
356513902 1388 PREDICTED: transcription initiation fact 0.985 0.710 0.783 0.0
356563105 1388 PREDICTED: transcription initiation fact 0.985 0.710 0.786 0.0
356563107 1368 PREDICTED: transcription initiation fact 0.965 0.706 0.771 0.0
449439379 1362 PREDICTED: transcription initiation fact 0.975 0.716 0.735 0.0
449516818 1362 PREDICTED: transcription initiation fact 0.975 0.716 0.735 0.0
297842145 1390 membrane alanyl aminopeptidase [Arabidop 0.985 0.709 0.706 0.0
22330618 1390 TBP-associated factor 2 [Arabidopsis tha 0.985 0.709 0.705 0.0
>gi|225455842|ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1684 bits (4362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 812/992 (81%), Positives = 893/992 (90%), Gaps = 7/992 (0%)

Query: 1   MAKPRKPKNEE-TKVENSG--AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHA 57
           MAKPRKPK ++ TK ENS   AVVRHQKLCLSID++K +IYGYTELEIAVPDIGIVGLHA
Sbjct: 1   MAKPRKPKTDDNTKPENSNSRAVVRHQKLCLSIDIDKRRIYGYTELEIAVPDIGIVGLHA 60

Query: 58  ENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELV 117
           ENL IESV VDGEPTEFE+YPH HQ+ E+EKRW S++S+ SSAAD A+++Y+SALEREL 
Sbjct: 61  ENLVIESVSVDGEPTEFEFYPH-HQHTESEKRWSSVLSA-SSAADVASSMYVSALERELD 118

Query: 118 PNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNAL 177
           PNLLI CCKP K  ++Q  Q +LEN L SS EPKQNVKLVR+DYWVE+ E GIHF+ N L
Sbjct: 119 PNLLIMCCKPEKSASEQQGQQSLENGLHSSGEPKQNVKLVRVDYWVERAETGIHFEDNVL 178

Query: 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVY 237
           HTDNQIRRARCWFPC+DDT+Q CCYDLEFTV+ NL+AVS GSLLYQVLSKDDPPRKTYVY
Sbjct: 179 HTDNQIRRARCWFPCMDDTSQCCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVY 238

Query: 238 RLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLD 297
           +L+VPV+A+WI LAVAPFEVLPD H  L+S++CLPAN+ K+ NTV FFH+AFSHYE YL 
Sbjct: 239 KLNVPVTARWIQLAVAPFEVLPDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLS 298

Query: 298 AKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQW 357
           A FPFGSYKQVF+APEMA+SS T GA+M IFSSQIL+DEKVIDQ IDT IKL++ALARQW
Sbjct: 299 ASFPFGSYKQVFIAPEMAISSLTLGASMSIFSSQILFDEKVIDQTIDTRIKLAYALARQW 358

Query: 358 FGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALS 417
           FGV+I+PE PNDEWLLDGLAGFLTDSF+K+FLGNNEARYRRYKANCAVCKADDSGATALS
Sbjct: 359 FGVFISPEAPNDEWLLDGLAGFLTDSFVKRFLGNNEARYRRYKANCAVCKADDSGATALS 418

Query: 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PVR 476
           SSASCKDLYGTQCIG++GKIRS KSVAILQMLEKQMG   FRKILQ I+ RAQ  +  +R
Sbjct: 419 SSASCKDLYGTQCIGLYGKIRSWKSVAILQMLEKQMGPESFRKILQTIVFRAQDTTRSLR 478

Query: 477 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536
           TLSTKEFRHFANKVGNLERPFLKEFFPRWVG+CGCPVLR G SYNKRKN+VELAVLR CT
Sbjct: 479 TLSTKEFRHFANKVGNLERPFLKEFFPRWVGSCGCPVLRAGLSYNKRKNLVELAVLRGCT 538

Query: 537 VKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCH 596
             PD+ T VL+ N DSENR+ DIGWPGMMSIRVHELDGMYDHPILPMAG+ WQLLEIQCH
Sbjct: 539 AAPDTNTMVLNGNIDSENREVDIGWPGMMSIRVHELDGMYDHPILPMAGETWQLLEIQCH 598

Query: 597 SKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP 656
           SKLAARR  KPKKGSKPDG DDNGD V  +DMRS+ ESPL W+R DPE+EYLAEIHFNQP
Sbjct: 599 SKLAARRFQKPKKGSKPDGSDDNGD-VPAVDMRSNTESPLLWLRVDPELEYLAEIHFNQP 657

Query: 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALA 716
            QMWINQLE+D DVVAQAQAIA LEALP LSF+VVN LNNFLSDSKAFWRVRIEAA+ALA
Sbjct: 658 AQMWINQLERDKDVVAQAQAIATLEALPQLSFSVVNALNNFLSDSKAFWRVRIEAAFALA 717

Query: 717 NTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN 776
           NTASEETDWAGLLHLVKFYKSRRFD NIGLP+PNDF DF EYFVLEAIPHA+AMVRAAD 
Sbjct: 718 NTASEETDWAGLLHLVKFYKSRRFDANIGLPKPNDFHDFPEYFVLEAIPHAIAMVRAADK 777

Query: 777 KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 836
           KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL
Sbjct: 778 KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRL 837

Query: 837 LQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896
           LQFDRLMPSYNGILTISCIRTLTQI LKLSGFI LD+V++L+KPFRDF  IWQVR+EASR
Sbjct: 838 LQFDRLMPSYNGILTISCIRTLTQIGLKLSGFIPLDRVIELVKPFRDFQAIWQVRIEASR 897

Query: 897 ALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTL 956
           ALL LEFH  GID+ALSLFIK VEEEPS+RGQVKLG+HAMR+CQIKGGS+S++++ + TL
Sbjct: 898 ALLGLEFHFKGIDAALSLFIKYVEEEPSIRGQVKLGVHAMRLCQIKGGSESDNDIKSSTL 957

Query: 957 VALLNLLESRIAFNNVFLRHHLFGILQILAGR 988
           VALL LLESRIAFNNVFLRHHLF IL+ILAGR
Sbjct: 958 VALLRLLESRIAFNNVFLRHHLFCILRILAGR 989

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455844|ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132980|ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|222868453|gb|EEF05584.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356513902|ref|XP_003525647.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356563105|ref|XP_003549806.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356563107|ref|XP_003549807.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449439379|ref|XP_004137463.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516818|ref|XP_004165443.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842145|ref|XP_002888954.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297334795|gb|EFH65213.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22330618|ref|NP_177536.2| TBP-associated factor 2 [Arabidopsis thaliana] gi|20856938|gb|AAM26691.1| At1g73960/F2P9_17 [Arabidopsis thaliana] gi|332197409|gb|AEE35530.1| TBP-associated factor 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1001
TAIR|locus:2031571 1390 TAF2 "TBP-associated factor 2" 0.985 0.709 0.674 0.0
DICTYBASE|DDB_G0292724 2044 taf2 "TFIID subunit" [Dictyost 0.281 0.137 0.353 1.9e-98
ZFIN|ZDB-GENE-030131-3207 1191 taf2 "TAF2 RNA polymerase II, 0.360 0.303 0.299 8.5e-73
UNIPROTKB|F6UTN8 1206 TAF2 "Uncharacterized protein" 0.360 0.299 0.283 2.6e-70
UNIPROTKB|E2QT19 1202 TAF2 "Uncharacterized protein" 0.358 0.298 0.284 3.4e-70
UNIPROTKB|Q6P1X5 1199 TAF2 "Transcription initiation 0.360 0.301 0.281 7.2e-70
MGI|MGI:2443028 1104 Taf2 "TAF2 RNA polymerase II, 0.357 0.324 0.283 2e-69
UNIPROTKB|Q5ZIT8 1168 TAF2 "Transcription initiation 0.360 0.309 0.283 2.1e-69
UNIPROTKB|F1MME0 1202 TAF2 "Uncharacterized protein" 0.360 0.300 0.283 9.9e-69
UNIPROTKB|F1LNY6 1200 Taf2 "Protein Taf2" [Rattus no 0.357 0.298 0.280 1.5e-68
TAIR|locus:2031571 TAF2 "TBP-associated factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3512 (1241.3 bits), Expect = 0., P = 0.
 Identities = 670/993 (67%), Positives = 783/993 (78%)

Query:     1 MAKPRKPKNEET---KV-ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLH 56
             MAK RKPKNEE    K  EN+GA V HQKL LSID +K QIYGYTELE++VPDIGIVGLH
Sbjct:     1 MAKARKPKNEEAPGAKTSENTGAKVLHQKLFLSIDFKKRQIYGYTELEVSVPDIGIVGLH 60

Query:    57 AENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRXXXXXXXXXXXXXXXXXXXXLEREL 116
             AENLGIESVLVDGEPT FEYYPH HQN E E  W                     L+RE 
Sbjct:    61 AENLGIESVLVDGEPTVFEYYPH-HQNSETESNWNSVSDPASAADAAAMEYVGV-LKRED 118

Query:   117 VPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDGNA 176
               NLLINCCKP K L++Q++ + LEN   SS E KQNVKL+RI+YWVEK+E GIHFDGN 
Sbjct:   119 TANLLINCCKPSKDLSEQLDSVTLENGSQSSGEAKQNVKLIRINYWVEKIESGIHFDGNI 178

Query:   177 LHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYV 236
             +HTDNQ+RRARCWFPCIDD   RC +DLEFTV  N +AVS G LLYQV+ K+D  +KTYV
Sbjct:   179 VHTDNQMRRARCWFPCIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTQKTYV 238

Query:   237 YRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYL 296
             Y L +P++ +W++L   P E+LPD    L+S++CLP ++S++ NT+EFFH A+S+YE YL
Sbjct:   239 YELAIPIAPRWVSLVAGPLEILPDQTNFLISNLCLPHDLSRLRNTMEFFHEAYSYYEDYL 298

Query:   297 DAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQ 356
              A FPFG YKQVFL PEM V+SST GA++ IFSS ILYDE+VIDQ IDT IKL+ ALA+Q
Sbjct:   299 SANFPFGFYKQVFLPPEMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQ 358

Query:   357 WFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATAL 416
             WFGVYITPE PND+WLLDGLAGFLTD FIK+FLGNNEARYRRYKANCAVCKADDSGA  L
Sbjct:   359 WFGVYITPESPNDDWLLDGLAGFLTDMFIKQFLGNNEARYRRYKANCAVCKADDSGAMCL 418

Query:   417 SSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS-PV 475
             SSS SC+DL+GT  IG+ GKIRS KS A+LQMLEKQMGS+ FRKILQ IISRA+  S  +
Sbjct:   419 SSSPSCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSI 478

Query:   476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDC 535
             R+LSTKEFR FANK+GNLERPFLKEFF RWV + GCPVLR+G SYNKRKN VE+A LR+C
Sbjct:   479 RSLSTKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALREC 538

Query:   536 TVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQC 595
             T   D+R  V+ + +DSE+RD D GWPG+MSIRV+ELDGM DHP LPMAGD WQLLE+ C
Sbjct:   539 TAALDARLSVIGATSDSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLELPC 598

Query:   596 HSXXXXXXXXXXXXGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQ 655
             HS            G KPDG +DN DA+A L+ ++S+ESPL+WI+ADPEMEY+AEIH +Q
Sbjct:   599 HSKLAAKRYQKPKKGGKPDGAEDNVDAIAPLENKTSIESPLAWIKADPEMEYIAEIHLHQ 658

Query:   656 PVQMWINQLEKDGDVVXXXXXXXXXXXXPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYAL 715
             P+QMW+NQLEKDGDVV               SF++VN L N L+DSK FWR+RI AA+AL
Sbjct:   659 PLQMWVNQLEKDGDVVAQAQAIASLEALKQHSFSIVNALKNVLTDSKVFWRIRIAAAFAL 718

Query:   716 ANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD 775
             A TASEE+DWAGL HL+KFYKSRRFD  IGLP+PNDFRDF EYFVLEAIPHA+A+VR A+
Sbjct:   719 AKTASEESDWAGLQHLIKFYKSRRFDAEIGLPKPNDFRDFPEYFVLEAIPHAIAIVRGAE 778

Query:   776 NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDR 835
              KSPREAVEF+LQLLKYNDN+GN YSDVFWLA LVQSVG+LEF QQS+ FL+ LLKRIDR
Sbjct:   779 GKSPREAVEFILQLLKYNDNSGNSYSDVFWLAVLVQSVGDLEFCQQSLTFLAPLLKRIDR 838

Query:   836 LLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEAS 895
             LLQFDRLMPSYNGILTISCIRTL Q ALKLS  IS D + KLI+PFR+ +TI Q+R+E S
Sbjct:   839 LLQFDRLMPSYNGILTISCIRTLAQTALKLSDSISFDHICKLIEPFRNSDTILQIRIEGS 898

Query:   896 RALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVT 955
             RALLD+E+   GI SAL LF+K + EE SLRGQVKL +H MR+CQI  G DS+  VDTVT
Sbjct:   899 RALLDIEYQSKGISSALLLFMKYLVEESSLRGQVKLCVHTMRLCQIAVGCDSDDCVDTVT 958

Query:   956 LVALLNLLESRIAFNNVFLRHHLFGILQILAGR 988
             L+ LL+L +S + FNN  LR++LF I QILAGR
Sbjct:   959 LLDLLHLFKSHVVFNNELLRYYLFCIFQILAGR 991
GO:0005634 "nucleus" evidence=ISM
GO:0008237 "metallopeptidase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0292724 taf2 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3207 taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6UTN8 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QT19 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P1X5 TAF2 "Transcription initiation factor TFIID subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443028 Taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIT8 TAF2 "Transcription initiation factor TFIID subunit 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MME0 TAF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNY6 Taf2 "Protein Taf2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017623001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (1256 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1001
cd09839507 cd09839, M1_TAF2, TATA binding protein (TBP) assoc 0.0
cd09595407 cd09595, M1, Peptidase M1 family contains aminopep 2e-22
cd09603415 cd09603, M1_APN_4, Peptidase M1 family Aminopeptid 5e-21
COG0308859 COG0308, PepN, Aminopeptidase N [Amino acid transp 2e-13
cd09602438 cd09602, M1_APN_3, Peptidase M1 family containing 1e-09
pfam01433390 pfam01433, Peptidase_M1, Peptidase family M1 3e-07
pfam1364688 pfam13646, HEAT_2, HEAT repeats 3e-04
TIGR02412831 TIGR02412, pepN_strep_liv, aminopeptidase N, Strep 4e-04
cd09604435 cd09604, M1_APN_5, Peptidase M1 family containing 8e-04
cd09599442 cd09599, M1_LTA4H, Peptidase M1 family contains le 0.004
>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 Back     alignment and domain information 
 Score =  576 bits (1486), Expect = 0.0
 Identities = 199/533 (37%), Positives = 286/533 (53%), Gaps = 54/533 (10%)

Query: 20  VVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77
            V HQK+ +SID  +  I GYTEL I     ++  + L+A+   I SV V+GEP +F Y 
Sbjct: 1   KVLHQKVEISIDFFRRSIIGYTELTILPLSKNLRQIRLNAKQCRILSVEVNGEPAKFTYN 60

Query: 78  PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQ 137
               Q +  ++ W+S++     A+DA+ +             LLI+  K  +        
Sbjct: 61  DP-TQELCRDEPWKSVLQH---ASDASLSAVSYVDLDANNGELLISVPKEVR-------- 108

Query: 138 MNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHFDG--------NALHTDNQI-RRARC 188
                        +Q V  VRID+ VE+ + G+HF G          + T N I   ARC
Sbjct: 109 ---------KLVDEQKVLRVRIDFSVEQPKGGLHFVGPDPEAERYPHVFTYNSIHGSARC 159

Query: 189 WFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWI 248
           WFPC+DD +Q C ++LEFTV  N++AVS+G LL QV   +D  +KTY Y L VP +A+ I
Sbjct: 160 WFPCVDDPSQLCTWELEFTVPANMVAVSSGDLLEQVYDTEDMRKKTYHYALTVPTAAQNI 219

Query: 249 TLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308
            LAV PFE+L D H   ++H CLP  + ++ NT  + H AF  +E YL  +FPF SYKQV
Sbjct: 220 GLAVGPFEILVDPHAHEITHFCLPGLLPELKNTTSYLHEAFEFFEEYLSCRFPFSSYKQV 279

Query: 309 FLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPN 368
           F+  E A   +++ A++ IFSS +LY E +IDQ  DT  KL++ALA QWFG +I+PE  +
Sbjct: 280 FV-DEAAEDVTSY-ASLSIFSSNLLYPEDIIDQTYDTRRKLAYALASQWFGCFISPEAWS 337

Query: 369 DEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKD---- 424
           DEWLL G+AG++T  F+KK  GNNE R+R  K    VC+ D      L            
Sbjct: 338 DEWLLKGIAGYITGLFVKKLFGNNEYRFRIKKELDRVCEYDIKRPGILLDPIILPGKLPL 397

Query: 425 ----LYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS------- 473
                +   C  ++G+  + K+  +L+MLE+++G   F ++L  I+SRA  AS       
Sbjct: 398 NPDPKHPHTCSPLYGEFMALKAHLVLRMLERRIGKESFLQVLNKILSRALQASQQKTQSG 457

Query: 474 --PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRK 524
                 LST+ F     KV       LK FF +WV   GCP  R+ F +N+++
Sbjct: 458 DWSQMLLSTESFFKTCEKV---SGKELKVFFQQWVYGSGCPKFRVSFRFNRKR 507

This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507
>gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase Back     alignment and domain information
>gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N Back     alignment and domain information
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N Back     alignment and domain information
>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N Back     alignment and domain information
>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1001
KOG1932 1180 consensus TATA binding protein associated factor [ 100.0
PRK14015875 pepN aminopeptidase N; Provisional 100.0
TIGR02414863 pepN_proteo aminopeptidase N, Escherichia coli typ 100.0
KOG1046882 consensus Puromycin-sensitive aminopeptidase and r 100.0
TIGR02412831 pepN_strep_liv aminopeptidase N, Streptomyces livi 100.0
TIGR02411601 leuko_A4_hydro leukotriene A-4 hydrolase/aminopept 100.0
COG0308859 PepN Aminopeptidase N [Amino acid transport and me 100.0
PF01433390 Peptidase_M1: Peptidase family M1 This is family M 100.0
KOG1047613 consensus Bifunctional leukotriene A4 hydrolase/am 100.0
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 98.77
COG3975558 Predicted protease with the C-terminal PDZ domain 98.55
PRK09687280 putative lyase; Provisional 97.26
PRK09687280 putative lyase; Provisional 97.19
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 95.34
KOG1932 1180 consensus TATA binding protein associated factor [ 95.06
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 94.98
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 94.87
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 94.04
TIGR02270410 conserved hypothetical protein. Members are found 93.45
PF07607128 DUF1570: Protein of unknown function (DUF1570); In 93.23
COG1413335 FOG: HEAT repeat [Energy production and conversion 93.17
PF10460366 Peptidase_M30: Peptidase M30; InterPro: IPR019501 92.84
PF05299122 Peptidase_M61: M61 glycyl aminopeptidase; InterPro 92.09
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 91.94
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 90.6
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 90.11
PTZ00429 746 beta-adaptin; Provisional 88.4
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 88.0
smart00638574 LPD_N Lipoprotein N-terminal Domain. 87.29
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 85.96
PF11864 464 DUF3384: Domain of unknown function (DUF3384); Int 84.86
KOG1824 1233 consensus TATA-binding protein-interacting protein 84.35
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-168  Score=1465.31  Aligned_cols=938  Identities=36%  Similarity=0.579  Sum_probs=774.0

Q ss_pred             CCCCCCCCCCC-C---CCCCCCcEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEecCCceeeEEEEcCeeee
Q 001875            1 MAKPRKPKNEE-T---KVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE   73 (1001)
Q Consensus         1 ~~~~~~~~~~~-p---~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~~   73 (1001)
                      |++.|++.+.. |   .+++++..++||+|+|+ ||++++++.|.|||+|.+  ++++.|.|||++|+|.+|.|||..+.
T Consensus         3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~   82 (1180)
T KOG1932|consen    3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK   82 (1180)
T ss_pred             cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence            56666666633 3   35667788999999998 999999999999999984  68999999999999999999999999


Q ss_pred             eeeCCCCcccchhhhhhccccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCC
Q 001875           74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN  153 (1001)
Q Consensus        74 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~  153 (1001)
                      |.|.++ .+....+..|.... .+...+......|....  .+.|+|.|.+|++....  +.+               ..
T Consensus        83 f~y~d~-~q~~~~~~~~~~~l-~~~s~~~~~~~~y~~l~--~~~g~L~I~ipk~~~~~--~ee---------------~~  141 (1180)
T KOG1932|consen   83 FIYNDP-TQNDCTDEIWQRVL-DPASQSHFLAVQYEDLD--EDNGELLIKIPKESKKV--GEE---------------LK  141 (1180)
T ss_pred             eeecch-hhhhhhhhhhhhhh-hhhhhhhhHHHhhhccc--cCCCeEEEEcCchhhhh--hhh---------------cc
Confidence            999987 45443333343211 11111122222232221  24678999876542211  111               11


Q ss_pred             cEEEEEEEEEecCCceeEeeee---------eEeccCcc--CCcceEEeecCCCCCeeEEEEEEEEeCCeEEEEcCcccc
Q 001875          154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY  222 (1001)
Q Consensus       154 ~~~~~i~y~~~~p~~G~~F~~~---------~~~T~~ep--~~AR~wFPC~D~p~~katf~l~Itvp~~~~avSnG~l~~  222 (1001)
                      ...++|+|.+++|..|++|++.         +++|.+.+  .+||+||||+|+++++|||+|++++|++++++++|+|.+
T Consensus       142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~  221 (1180)
T KOG1932|consen  142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE  221 (1180)
T ss_pred             ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence            2347899999999999999864         45665544  368999999999999999999999999999999999999


Q ss_pred             eeeccCCCCcEEEEEeccCCccceeeEEEEeecceeecCCCCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 001875          223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF  302 (1001)
Q Consensus       223 ~~~~~~~~~~kt~~F~~t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf  302 (1001)
                      ++.++ |.+++|++|..+.|++|.+||||||+|+.+..+.+.++++||+|+.++.+++++-.+.++++|||++||..|||
T Consensus       222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF  300 (1180)
T KOG1932|consen  222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF  300 (1180)
T ss_pred             eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence            99876 88999999999999999999999999999988889999999999999999999999999999999999988999


Q ss_pred             CCccEEEeCCCCcccccccccchhhccccccccccccchhhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHH
Q 001875          303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD  382 (1001)
Q Consensus       303 ~k~~~V~Vp~~~~~~~~~~gagL~i~~~~lL~~~~~~d~~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~  382 (1001)
                      +.|++||||+.+.  .....++|.|+++++||+.++||+.+.+++.+|.+||.||||++|||..|+|.||.+|+|+||..
T Consensus       301 ~~~k~VFvd~~~~--~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~  378 (1180)
T KOG1932|consen  301 SCYKTVFVDEAAV--EISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG  378 (1180)
T ss_pred             ceeeEEEecCCcc--eeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence            9999999996432  23455679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcHHHHHHHHhhhhhhhhcc-CCCccCCCCCccccCCCCcccccccchhhhhHHHHHHHHHHhh----chHH
Q 001875          383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF  457 (1001)
Q Consensus       383 ~~~~~~~G~~e~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~l----G~e~  457 (1001)
                      +|+++++|+|||||+.++.+++++..|. .++..+..     +++++.   .|    -.|+++.+|.+.+++    |.-.
T Consensus       379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~  446 (1180)
T KOG1932|consen  379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG  446 (1180)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence            9999999999999999999999998876 44444331     111110   01    245555555555554    2233


Q ss_pred             HHHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeecc
Q 001875          458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT  536 (1001)
Q Consensus       458 F~~~L~~yl~~~~~~~-~~~~lst~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~  536 (1001)
                      ....+++.+...+.++ .+..++.+.|+++++.++.   ..++.||++|+++.|+|.+.+.+.||++++.|++.+.|.+.
T Consensus       447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~---~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~  523 (1180)
T KOG1932|consen  447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASK---MLLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR  523 (1180)
T ss_pred             HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhh---hHHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence            3445555555544444 2223445556666665542   12589999999999999999999999999999999999665


Q ss_pred             CCCCCCCcccc------CCCCCCC----CCCCCCcccceeEEEecCCCcccccccccCCCceEEEEeeccccchhhhhcC
Q 001875          537 VKPDSRTPVLS------SNTDSEN----RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK  606 (1001)
Q Consensus       537 ~~~~~~~~~~~------~~~~~~~----~~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~~~~~~i~~~sk~~~~r~~k  606 (1001)
                      .......++.+      ...+.+.    ..+...|+|||||||||.||+|+|++ +| ++.|++.|||||||   +|++|
T Consensus       524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k  598 (1180)
T KOG1932|consen  524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK  598 (1180)
T ss_pred             hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence            54433222111      0111111    12235699999999999999999986 35 45699999999999   45588


Q ss_pred             CCCCCCCCCCCCCCCccccccccccCCCCceEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHcCCCC
Q 001875          607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL  686 (1001)
Q Consensus       607 ~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~  686 (1001)
                      +||.++.+|+|+++| ++.||    .++|++|||+||||||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus       599 kKk~~l~sgEE~e~d-l~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~  673 (1180)
T KOG1932|consen  599 KKKVPLMSGEEIEMD-LTNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST  673 (1180)
T ss_pred             CcCCCCCChhhhccc-ccccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence            899999999999988 87776    3899999999999999999999999999999999999999999999999999865


Q ss_pred             chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 001875          687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH  766 (1001)
Q Consensus       687 s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~v~~ai~~  766 (1001)
                        ..+++|+|||.|+|||||||++||+||+++++++.+|.|++||+++|+++||+.+++|||||||+|||+|||||+||.
T Consensus       674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~  751 (1180)
T KOG1932|consen  674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV  751 (1180)
T ss_pred             --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence              467999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHH-------------HHHHHHHHH
Q 001875          767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL-------------FLSSLLKRI  833 (1001)
Q Consensus       767 a~a~~r~~~g~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~-------------~~~~~~~ei  833 (1001)
                      |||.+|+.+|+||++|++||||||||||||+|+|||+||||+||+||++..++..+..             +...++.||
T Consensus       752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei  831 (1180)
T KOG1932|consen  752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI  831 (1180)
T ss_pred             HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999876643322             344599999


Q ss_pred             HHHHhcccccCCCCchhHHHHHHHHHHHHHHhcCCCChhhhhhhhccccCCCChHHHHHHHHHHhhccccccCChHHHHH
Q 001875          834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALS  913 (1001)
Q Consensus       834 ~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~  913 (1001)
                      +|+|+||+++|||.+||+++||+++.++  +..|++|.++  ..+..|+..+++.++|++|++++++++.. +|....|.
T Consensus       832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l--~k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-~~~~~~l~  906 (1180)
T KOG1932|consen  832 TRLLNMEKLMPSFKHIIKVSALKAIREL--QKSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-DGSPDDLA  906 (1180)
T ss_pred             HHHHHHHhhchhhhceEEeeechhhhhh--hhccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-CCChHHHH
Confidence            9999999999999999999999999998  4589999887  45789999999999999999999999863 44568899


Q ss_pred             HHHHHhccCCccchhhHHHHhhhc-cch-hccCCCCCCCcCcHHHHHHHHHHhccccccchhhhhhHHHHHHHHhCCC-c
Q 001875          914 LFIKSVEEEPSLRGQVKLGIHAMR-ICQ-IKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRW-V  990 (1001)
Q Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~l~g~~-~  990 (1001)
                      ++++.++.||++..|+++...... ..+ +.+|++|  .++++++++++|.+++....+|+.+||.+.|+|.+|+|+. |
T Consensus       907 ~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~~~s--~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d~~~~L~~~~~~  984 (1180)
T KOG1932|consen  907 YILEILENDPDPVIRHKILDMLSQSNNPVTKGGTES--DLLKEALVERLWKLKNLSKEPDICSRSSVLDVYIALFGLGRP  984 (1180)
T ss_pred             HHhhhcccCcchHHHHHHHHHhhccCCceeeccccC--ccccHHHHHhhhhhhccCCCCCeEeEeehhhhhhheeecCCc
Confidence            999999998777776655544443 333 4444655  9999999999999999999999999999999999999998 9


Q ss_pred             cccccc
Q 001875          991 YCFLSF  996 (1001)
Q Consensus       991 ~~~~~~  996 (1001)
                      .|+.-+
T Consensus       985 ~~~~a~  990 (1180)
T KOG1932|consen  985 NILGAP  990 (1180)
T ss_pred             ccccch
Confidence            987644

>PRK14015 pepN aminopeptidase N; Provisional Back     alignment and domain information
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type Back     alignment and domain information
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification Back     alignment and domain information
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1001
3cia_A605 Crystal Structure Of Cold-Aminopeptidase From Colwe 5e-07
4e36_A967 Crystal Structure Of The Human Endoplasmic Reticulu 5e-06
3se6_A967 Crystal Structure Of The Human Endoplasmic Reticulu 7e-06
3mdj_A921 Er Aminopeptidase, Erap1, Bound To The Zinc Aminope 1e-05
2yd0_A897 Crystal Structure Of The Soluble Domain Of Human En 4e-05
4fyq_A903 Human Aminopeptidase N (Cd13) Length = 903 5e-05
3qnf_A954 Crystal Structure Of The Open State Of Human Endopl 5e-05
3q7j_A780 Engineered Thermoplasma Acidophilum F3 Factor Mimic 6e-05
1z1w_A780 Crystal Structures Of The Tricorn Interacting Facor 2e-04
4hol_A908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
4fke_A909 Crystal Structure Of Porcine Aminopeptidase-N Lengt 2e-04
4h5h_A908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-04
4f5c_A959 Crystal Structure Of The Spike Receptor Binding Dom 3e-04
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605 Back     alignment and structure 
Iteration: 1

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 130/382 (34%), Gaps = 54/382 (14%)
Query: 153 NVKLVRIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYD 203
           N K VR+ Y   +   G+ +         +   L + NQ   AR W P  D  + R  Y 
Sbjct: 108 NAKKVRVYYNSTEKATGLQWLSAEQTAGKEKPFLFSQNQAIHARSWIPIQDTPSVRVTYT 167
Query: 204 LEFTVSQNLIAVSAGSLLYQVLSKDDPPRKT----YVYRLDVPVSAKWITLAVAPFEVLP 259
              T  ++L+A         V+S ++ P       Y + +   +    I + V   E   
Sbjct: 168 ARITTDKDLLA---------VMSANNEPGTERDGDYFFSMPQAIPPYLIAIGVGDLEFKA 218
Query: 260 DHHQS--LMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVS 317
             HQ+        L A V++  +T      A   Y      K+ +G Y  + L P     
Sbjct: 219 MSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMY-----GKYRWGRYDLLMLPPSFPFG 273
Query: 318 SSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLA 377
                    I  + +  D+ +++        ++  LA  W G  +T E   D WL +G  
Sbjct: 274 GMENPRLSFITPTVVAGDKSLVNL-------IAHELAHSWSGNLVTNESWRDLWLNEGFT 326
Query: 378 GFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLY----GTQCIGI 433
            ++ +  ++   G + A   +         A D  A  L   AS   LY    G      
Sbjct: 327 SYVENRIMEAVFGTDRAVMEQ------ALGAQDLNAEILELDASDTQLYIDLKGRDPDDA 380
Query: 434 FGKIRSCKSVAILQMLEKQMGSNFFRK-ILQNIISRAQGASPVRTLSTKEFRHF--ANKV 490
           F  +   K    L  LE++ G   F   +L+   S A      ++L T  F  +  AN  
Sbjct: 381 FSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHA-----FQSLGTDNFVKYLKANLT 435
Query: 491 GNLERPFLKEFFPRWVGTCGCP 512
                         W+   G P
Sbjct: 436 DKYPNIVSDNEINEWIFKAGLP 457
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967 Back     alignment and structure
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967 Back     alignment and structure
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921 Back     alignment and structure
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897 Back     alignment and structure
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 Back     alignment and structure
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954 Back     alignment and structure
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 Back     alignment and structure
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 Back     alignment and structure
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 Back     alignment and structure
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 Back     alignment and structure
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 Back     alignment and structure
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1001
3b7s_A616 Leukotriene A-4 hydrolase; transition state, analo 3e-21
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 5e-15
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 1e-04
3b34_A891 Aminopeptidase N; protease, hydrolase, thermolysin 5e-14
2gtq_A867 Aminopeptidase N; alanine aminopeptidase, M1 famil 7e-13
3ebh_A889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 1e-09
3se6_A967 Endoplasmic reticulum aminopeptidase 2; thermolysi 1e-05
2xdt_A897 Endoplasmic reticulum aminopeptidase 1; glycoprote 2e-05
1z5h_A780 Tricorn protease interacting factor F3; zinc amino 3e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 5e-04
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 Back     alignment and structure
 Score = 98.3 bits (245), Expect = 3e-21
 Identities = 63/419 (15%), Positives = 132/419 (31%), Gaps = 38/419 (9%)

Query: 143 KLDSSAEPKQNVKLVRIDYWVEKVEVGIHF------DGNA---LHTDNQIRRARCWFPCI 193
            L  +    Q +  + I +        + +       G     L +  Q    R   PC 
Sbjct: 95  SLPIALSKNQEIV-IEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQ 153

Query: 194 DDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253
           D  + +  Y  E +V + L+A+ +     +    +DP RK Y +   VP+    I L V 
Sbjct: 154 DTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVG 213

Query: 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPE 313
             E      ++          V K         +     E  L   + +G Y  + L P 
Sbjct: 214 ALESRQIGPRT--LVWSEKEQVEKSAYEFSETESMLKIAE-DLGGPYVWGQYDLLVLPPS 270

Query: 314 MAVSSSTFGAAMG----IF--SSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELP 367
                  +G  M      F   + +  D+ +     +        ++  W G  +T +  
Sbjct: 271 FP-----YG-GMENPCLTFVTPTLLAGDKSL----SNVIAHQ---ISHSWTGNLVTNKTW 317

Query: 368 NDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYG 427
           +  WL +G   +L      +  G     +        +  +  +       +    DL  
Sbjct: 318 DHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 377

Query: 428 TQCIGIFGKIRSCKSVAILQMLEKQM-GSNFFRKILQNIISRAQGASPVRTLSTKEFR-H 485
                 +  +   K  A+L  LE+ + G   F   L+  + +    S    ++T +++  
Sbjct: 378 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDF 433

Query: 486 FANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTP 544
             +   +      +  +  W+ + G P ++  +        + L+       + D  + 
Sbjct: 434 LYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSF 492
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 Back     alignment and structure
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1001
3b34_A891 Aminopeptidase N; protease, hydrolase, thermolysin 100.0
3ebh_A889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 100.0
3se6_A967 Endoplasmic reticulum aminopeptidase 2; thermolysi 100.0
2xdt_A897 Endoplasmic reticulum aminopeptidase 1; glycoprote 100.0
2gtq_A867 Aminopeptidase N; alanine aminopeptidase, M1 famil 100.0
4fke_A909 Aminopeptidase N; zinc aminopeptidase, hydrolase; 100.0
1z5h_A780 Tricorn protease interacting factor F3; zinc amino 100.0
3u9w_A608 Leukotriene A-4 hydrolase; hydrolase-hydrolase inh 100.0
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 100.0
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 100.0
4fgm_A597 Aminopeptidase N family protein; structural genomi 99.88
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.71
3rjo_A419 Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd 96.69
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.38
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.91
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 94.84
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 94.74
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 94.62
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 94.41
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 93.27
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 93.01
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 91.14
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 91.09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 89.2
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 88.7
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 87.54
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 86.81
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 86.39
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 86.1
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 86.02
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 85.3
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 84.57
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 84.41
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 84.12
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 83.65
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 82.48
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 82.36
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-73  Score=709.61  Aligned_cols=542  Identities=15%  Similarity=0.178  Sum_probs=412.6

Q ss_pred             CCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEecCCceeeEEEEcCeee-eeeeCCCCcccchhhhhhc
Q 001875           13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRWR   91 (1001)
Q Consensus        13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~-~f~~~~~~~~~~~~~~~~~   91 (1001)
                      ....+++.+.||+|++++++.+.+++|.++|++...+++.|.||+++|+|++|++||+++ .|+..+.            
T Consensus        33 ~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~~------------  100 (891)
T 3b34_A           33 DYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEG------------  100 (891)
T ss_dssp             GCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEETT------------
T ss_pred             hCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeCC------------
Confidence            345678999999999999999999999999987654567899999999999999999887 5554321            


Q ss_pred             cccCCCCchHHHHHHHHHHhhhccCCCceEEeccCCCCCchhhhhhhhcccccCCCCccCCCcEEEEEEEEEe----cCC
Q 001875           92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE----KVE  167 (1001)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~----~p~  167 (1001)
                                                 .|+|.   +   ++ +  .+                 .+.|.|...    ...
T Consensus       101 ---------------------------~L~I~---~---lp-~--~~-----------------~l~I~y~~~p~~~~~l  127 (891)
T 3b34_A          101 ---------------------------ALVIS---N---LP-E--RF-----------------TLKIINEISPAANTAL  127 (891)
T ss_dssp             ---------------------------EEEEC---S---CC-S--EE-----------------EEEEEEEECGGGCCSC
T ss_pred             ---------------------------EEEEE---e---CC-C--eE-----------------EEEEEEEEeecccCCC
Confidence                                       35553   0   11 0  11                 223333321    112


Q ss_pred             ceeEeeeeeEeccCccCCcceEEeecCCCCCeeEEEEEEEEeCC-e-EEEEcCcccceeeccCCCCcEEEEEeccCCccc
Q 001875          168 VGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA  245 (1001)
Q Consensus       168 ~G~~F~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~Itvp~~-~-~avSnG~l~~~~~~~~~~~~kt~~F~~t~p~s~  245 (1001)
                      .|+++.+.+++|||||.+||+||||+|+|+.||+|+++|++|++ | +++|||+++++..  .++++++++|..++|||+
T Consensus       128 ~Gly~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pmst  205 (891)
T 3b34_A          128 EGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKPC  205 (891)
T ss_dssp             CEEEEETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEECG
T ss_pred             ceEEEeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCccc
Confidence            35555556789999999999999999999999999999999997 6 9999999987653  356789999999999999


Q ss_pred             eeeEEEEeecceeecC----C--CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccc
Q 001875          246 KWITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSS  319 (1001)
Q Consensus       246 yliafaVG~F~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~~~~~~  319 (1001)
                      |++||+||+|+.+++.    .  +.++++|++|+..+.++++++.++++++|||++||++|||++|++|++|+...++|+
T Consensus       206 YL~A~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaME  285 (891)
T 3b34_A          206 YLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAME  285 (891)
T ss_dssp             GGCCEEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEEC
T ss_pred             eeeEEEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCccc
Confidence            9999999999998752    2  257999999999999999999999999999999999999999999999976567888


Q ss_pred             ccccchhhc-cccccccccccc-hhh-hhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 001875          320 TFGAAMGIF-SSQILYDEKVID-QAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARY  396 (1001)
Q Consensus       320 ~~gagL~i~-~~~lL~~~~~~d-~~~-~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~  396 (1001)
                      ++  |+++| +..+|+++.... ... ....+||||+|||||||+|||+||+|+|||||||+|++.+++++..|....++
T Consensus       286 n~--GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~~  363 (891)
T 3b34_A          286 NK--GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRI  363 (891)
T ss_dssp             CT--TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             cC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHHH
Confidence            87  67888 456888776432 222 23468999999999999999999999999999999999999998877554333


Q ss_pred             HHHHhhhhhhhhccCCCccCCCCCccccCC---CCcccccccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHhcCCC
Q 001875          397 RRYKANCAVCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS  473 (1001)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~  473 (1001)
                      .............+.+       +..+++.   ..++.+.|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus       364 ~~~~~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~~  436 (891)
T 3b34_A          364 NNVRTMRGLQFAEDAS-------PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSA  436 (891)
T ss_dssp             HHHHHHHHTHHHHHTS-------TTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHhhhhhhcc-------ccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCCC
Confidence            2221111100111111       1112221   12345678899999999999999999999999999999999999985


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCcccHHhhhhhcccCCCcceEEEEEEEeccCcEEEEEEEeeccCCCCCCCccccCCCCCC
Q 001875          474 PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSE  553 (1001)
Q Consensus       474 ~~~~lst~~F~~~~e~v~~~~~~dl~~ff~qWv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~  553 (1001)
                          +++++|.+.+++++|   .|+++ |++|++++|+|+++|+..|+.+++.++++++|......              
T Consensus       437 ----att~Df~~ale~~sg---~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~--------------  494 (891)
T 3b34_A          437 ----ATCDDFVQAMEDASN---VDLSH-FRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATP--------------  494 (891)
T ss_dssp             ----ECHHHHHHHHHHHHC---CCCTT-TTHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBT--------------
T ss_pred             ----CCHHHHHHHHHHHhC---CCHHH-HHHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCCC--------------
Confidence                799999999999884   68888 57999999999999999998777777787777542110              


Q ss_pred             CCCCCCCcccceeEEEecCCCcccccccccCCCc-eEEEEeeccccchhhhhcCCCCCCCCCCCCCCCCccccccccccC
Q 001875          554 NRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSM  632 (1001)
Q Consensus       554 ~~~~~~~~~gp~tiri~e~dGt~eh~~~~~~~~~-~~~~~i~~~sk~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~  632 (1001)
                      ..+....|++|+++.+.+.||... ... +.+.. ..++.+.                    +.+...+ +...     .
T Consensus       495 ~~~~~~~~~iPi~v~l~~~~G~~~-~~~-~~~~~~~~~~~l~--------------------~~~~~~~-~~~v-----~  546 (891)
T 3b34_A          495 DQAEKQPLHIPFAIELYDNEGKVI-PLQ-KGGHPVNSVLNVT--------------------QAEQTFV-FDNV-----Y  546 (891)
T ss_dssp             TBSCCCCCCEEEEEEEECTTSCBC-CCE-ETTEECCSEEEEC--------------------SSEEEEE-ECCC-----C
T ss_pred             CCCCCceEEEEEEEEEEcCCCCcc-ccc-ccccccceEEEec--------------------CCcEEEE-EccC-----C
Confidence            001234799999999998888631 110 11110 0011110                    0000000 1000     1


Q ss_pred             CCCceEEEecCCCceeeEeeccCchhHHHHHHcccCChHHHHHHHHHHHc
Q 001875          633 ESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA  682 (1001)
Q Consensus       633 ~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~  682 (1001)
                      +.|  ||++|+++....+|++++++++|+.||++|+|+.+|.||++.|..
T Consensus       547 ~~P--~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~  594 (891)
T 3b34_A          547 FQP--VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLA  594 (891)
T ss_dssp             SCC--EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             CCC--cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence            223  799999999999999999999999999999999999999999975
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Back     alignment and structure
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Back     alignment and structure
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Back     alignment and structure
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1001
d3b7sa2208 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-term 3e-14
d3b7sa3252 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat 1e-12
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 208 Back     information, alignment and structure

class: All beta proteins
fold: Leukotriene A4 hydrolase N-terminal domain
superfamily: Leukotriene A4 hydrolase N-terminal domain
family: Leukotriene A4 hydrolase N-terminal domain
domain: Leukotriene A4 hydrolase N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 3e-14
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 65/247 (26%)

Query: 17  SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTEF 74
           S    +H  L  S+D  +  + G   L +     ++  + L  ++L IE V+++G+  ++
Sbjct: 14  SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKY 73

Query: 75  EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQ 134
                  Q+ +      S+  +                                      
Sbjct: 74  ALGE--RQSYKGSPMEISLPIAL------------------------------------- 94

Query: 135 IEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHF---------DGNALHTDNQIRR 185
                           K    ++ I +        + +         +   L +  Q   
Sbjct: 95  ---------------SKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIH 139

Query: 186 ARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245
            R   PC D  + +  Y  E +V + L+A+ +     +    +DP RK Y +   VP+  
Sbjct: 140 CRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 199

Query: 246 KWITLAV 252
             I L V
Sbjct: 200 YLIALVV 206
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1001
d3b7sa3252 Leukotriene A4 hydrolase catalytic domain {Human ( 100.0
d3b7sa2208 Leukotriene A4 hydrolase N-terminal domain {Human 99.97
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 94.53
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 93.3
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 91.06
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 90.57
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 89.65
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 89.21
d1b3ua_588 Constant regulatory domain of protein phosphatase 87.49
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 83.4
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=356.79  Aligned_cols=238  Identities=14%  Similarity=0.234  Sum_probs=185.4

Q ss_pred             CCeeEEEEccCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCC-cccccccccchhhccccccccccccch
Q 001875          263 QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEM-AVSSSTFGAAMGIFSSQILYDEKVIDQ  341 (1001)
Q Consensus       263 ~~~v~~~~~p~~~~~~~~~~~~~~~~l~f~e~~~g~~YPf~k~~~V~Vp~~~-~~~~~~~gagL~i~~~~lL~~~~~~d~  341 (1001)
                      +.+|++|++|+..+.++++++.+++++++||+++| ||||++|++|++|+++ .++|+++  |++++++.++..+..   
T Consensus         7 g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g-~YP~~k~d~v~~~~~~~~ggmE~~--~l~~~~~~~~~~~~~---   80 (252)
T d3b7sa3           7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--CLTFVTPTLLAGDKS---   80 (252)
T ss_dssp             ETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--TEEEECGGGCCSSST---
T ss_pred             CCceEEEEccchHHHHHHHHHHHHHHHHHHHHhCC-CCCchhcCEEEeCCCccccccccc--eeeeecchhccccch---
Confidence            56899999999999999999999999999999998 9999999999996443 3456654  567776655543321   


Q ss_pred             hhhhHHHHHHHHHHhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhhhhhhhhcc--CCCccCCCC
Q 001875          342 AIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADD--SGATALSSS  419 (1001)
Q Consensus       342 ~~~~~~~iaHELAHQWFG~lVt~~~w~d~WLnEGfA~Yl~~~~~~~~~G~~e~~~~~~~~~~~~~~~~~--~~~~~l~~~  419 (1001)
                         ...+||||+|||||||+||++||+|+||+||||+|++.+++++.+|.+..++.............+  ....++...
T Consensus        81 ---~~~~iaHE~aHqWfG~~Vt~~~w~~~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (252)
T d3b7sa3          81 ---LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKL  157 (252)
T ss_dssp             ---TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGSS
T ss_pred             ---HHHHHHHHHHHHHHhhhceeccccchHhhccHHHHHHHHhhccccchhhhhhhhhhhhhhHHHHHhhhhccCCccee
Confidence               234799999999999999999999999999999999999999999988765443332222111111  111121111


Q ss_pred             CccccCCCCcccccccchhhhhHHHHHHHHHHhhc-hHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhcCCCcccH
Q 001875          420 ASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFL  498 (1001)
Q Consensus       420 ~~~~~~~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~lst~~F~~~~e~v~~~~~~dl  498 (1001)
                        .......++...|+.++|.||++||+||++.|| ++.|+++|+.|++++++++    +++++|.+.+++++   +.++
T Consensus       158 --~~~~~~~~~~~~f~~~~Y~Kga~vl~mL~~~iG~~~~f~~~lr~yl~~~~~~~----~~~~df~~~l~~~~---~~~~  228 (252)
T d3b7sa3         158 --VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTDDWKDFLYSYF---KDKV  228 (252)
T ss_dssp             --SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHT---GGGH
T ss_pred             --eccccccchhhcccceeecchhHHHHHHHHHhccHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHh---cccc
Confidence              011112223456888999999999999999999 5789999999999999985    79999999999987   4577


Q ss_pred             Hhh----hhhcccCCCcceEEEEE
Q 001875          499 KEF----FPRWVGTCGCPVLRMGF  518 (1001)
Q Consensus       499 ~~f----f~qWv~~~G~P~l~V~~  518 (1001)
                      +.+    |++|++++|+|+|+|++
T Consensus       229 ~~~~~~~f~~W~~~~G~P~l~v~~  252 (252)
T d3b7sa3         229 DVLNQVDWNAWLYSPGLPPIKPNY  252 (252)
T ss_dssp             HHHTTSCHHHHHHCCSSCSSCCCC
T ss_pred             chhhHhHHHHHhcCCCCCeeeccC
Confidence            777    99999999999998863
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure