Citrus Sinensis ID: 001916
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 996 | 2.2.26 [Sep-21-2011] | |||||||
| F4JCC1 | 992 | Pre-mRNA-processing prote | yes | no | 0.935 | 0.939 | 0.458 | 0.0 | |
| B6EUA9 | 958 | Pre-mRNA-processing prote | no | no | 0.924 | 0.961 | 0.485 | 0.0 | |
| Q9R1C7 | 953 | Pre-mRNA-processing facto | yes | no | 0.628 | 0.656 | 0.309 | 4e-63 | |
| O75400 | 957 | Pre-mRNA-processing facto | yes | no | 0.644 | 0.670 | 0.298 | 2e-62 | |
| Q80W14 | 870 | Pre-mRNA-processing facto | no | no | 0.429 | 0.491 | 0.325 | 1e-40 | |
| O14176 | 695 | Pre-mRNA-processing prote | yes | no | 0.560 | 0.802 | 0.241 | 2e-40 | |
| Q6NWY9 | 871 | Pre-mRNA-processing facto | no | no | 0.421 | 0.482 | 0.321 | 2e-39 | |
| P34600 | 724 | WW domain-containing prot | yes | no | 0.493 | 0.679 | 0.262 | 1e-38 | |
| O14776 | 1098 | Transcription elongation | no | no | 0.255 | 0.231 | 0.226 | 5e-11 | |
| Q8CGF7 | 1100 | Transcription elongation | no | no | 0.255 | 0.230 | 0.226 | 1e-10 |
| >sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 | Back alignment and function desciption |
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Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/1047 (45%), Positives = 647/1047 (61%), Gaps = 115/1047 (10%)
Query: 4 MANNAPYSGAQVPHQPPMVGSMDPPRG--------------------------------- 30
MANN Y G Q P Q P S+D PRG
Sbjct: 1 MANNHQYPGIQ-PFQHPNASSIDLPRGFAPPMNFQFLPTIQAPQSEQVARLSSQNFQCVG 59
Query: 31 QGGLIMNAGFPSQPLQPPFRPLMHPLPARP---GPPAPSHVP-PPPQVMSLPNAQPSNHI 86
+GG +++ G+P Q P MH RP HVP PP ++S PN ++
Sbjct: 60 RGGTVLSIGYPPQSYAPQLLQSMHHSHERPSQLNQVQVQHVPLGPPTLISQPNVSIAS-- 117
Query: 87 PPSSLPRPNVQALSSYPPGLGG----LGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMS 142
+SL +P VQ PG GG P A SY S PQ+ G
Sbjct: 118 -GTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSYE---GSRVPPQVTG----------- 162
Query: 143 QMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKE 202
PSI + Q S+ ++ S+ + PT EQ A L+P ++ TDW E
Sbjct: 163 ----PSIHSQAQQRASIIHTSAESSIMNPTFEQPKAAF-------LKPLPSQKALTDWVE 211
Query: 203 HTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSK 262
HTSADGR+Y+FNKRT+ STW+KP ELMT ERADA TDWKE +SPDGRKYYYNK+TKQS
Sbjct: 212 HTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQST 271
Query: 263 WSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSS 322
W++P+E+K+ REQAE AS++G P+++ I + ++ +++ + + + S+
Sbjct: 272 WTMPEEMKIVREQAEIASVQG------PHAEGIIDASEVLTRSDTASTAAPTGLPSQTST 325
Query: 323 PVAVVPIIAASET-QPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAV 381
V + S+ QPA SVP +S S V N D + D + + D S + G +V
Sbjct: 326 SEGVEKLTLTSDLKQPA--SVPGSS-----SPVENVDRVQMSADETSQLCDTSETDGLSV 378
Query: 382 --TDNTVAEA--KNNLS--------NMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDA 429
T+ + A K+ +S +MS + S P +E++K V EKV
Sbjct: 379 PVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGP----KESQKPMVESEKVESQ 434
Query: 430 LEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGER 489
EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+RYGALRTLGER
Sbjct: 435 TEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGER 494
Query: 490 KTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFK 549
K AFNE+L Q K+ EER + KK +D+K+MLEE VELT STRWSK VTMFE+DERFK
Sbjct: 495 KQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFK 554
Query: 550 ALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDR 609
ALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK N+QWRKVQDR
Sbjct: 555 ALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDR 614
Query: 610 LEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADV 669
LE DERCSRL+K+D+LEIFQEYL DLE+EEEE++KIQKEEL K ERK+RDEF L++ +
Sbjct: 615 LEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHI 674
Query: 670 ALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKD 729
A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+ E K++IKD
Sbjct: 675 ATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKD 734
Query: 730 AVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKR 789
+KLRK+ LS+ TF++FK S+ ED P I DV LKL+FDDLL + KEKEEKEA+K+ R
Sbjct: 735 VLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTR 794
Query: 790 LEDEFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKD 849
++ D+L S K+I+A+S+WE + L+EGS++ S+IGDES + F+++V+ LKEQ+
Sbjct: 795 QTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYVSLLKEQSN- 853
Query: 850 YERKRKEEKAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDHDDSAE---N 906
+ K+ K E REE D+ + K GR+K+R RER+ +DH KK A + D E
Sbjct: 854 ---RIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGKYNHDMNEPHGK 910
Query: 907 DSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPR-RLASTPESENESR 965
+ +RSG+D+ +HR+RH S + EN+ D K H+ KK R + E+E E +
Sbjct: 911 ERRRSGRDSHNRHRERHTS----VKENDTDHFKESHKAGGGHKKSRHQRGWVSEAEVEGK 966
Query: 966 HKRHRRDNRNGSRKNGDHEDLEDGEYG 992
KR R++ +R++ E+LEDGE G
Sbjct: 967 EKRRRKEE---AREHTKEEELEDGECG 990
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Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II. Arabidopsis thaliana (taxid: 3702) |
| >sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 | Back alignment and function description |
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| >sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 | Back alignment and function description |
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| >sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=2 SV=2 | Back alignment and function description |
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| >sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1 | Back alignment and function description |
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| >sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 996 | ||||||
| 255562210 | 956 | protein binding protein, putative [Ricin | 0.923 | 0.962 | 0.608 | 0.0 | |
| 356574333 | 1072 | PREDICTED: pre-mRNA-processing factor 40 | 0.952 | 0.885 | 0.545 | 0.0 | |
| 224060893 | 972 | predicted protein [Populus trichocarpa] | 0.929 | 0.952 | 0.548 | 0.0 | |
| 356534266 | 1017 | PREDICTED: pre-mRNA-processing factor 40 | 0.956 | 0.937 | 0.539 | 0.0 | |
| 302142164 | 1030 | unnamed protein product [Vitis vinifera] | 0.963 | 0.932 | 0.531 | 0.0 | |
| 449484509 | 983 | PREDICTED: pre-mRNA-processing protein 4 | 0.937 | 0.950 | 0.523 | 0.0 | |
| 359492532 | 1020 | PREDICTED: pre-mRNA-processing factor 40 | 0.940 | 0.918 | 0.523 | 0.0 | |
| 449465095 | 796 | PREDICTED: pre-mRNA-processing protein 4 | 0.787 | 0.984 | 0.588 | 0.0 | |
| 224127228 | 1019 | predicted protein [Populus trichocarpa] | 0.969 | 0.947 | 0.5 | 0.0 | |
| 356554026 | 1002 | PREDICTED: pre-mRNA-processing factor 40 | 0.965 | 0.960 | 0.510 | 0.0 |
| >gi|255562210|ref|XP_002522113.1| protein binding protein, putative [Ricinus communis] gi|223538712|gb|EEF40313.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1036 bits (2680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/985 (60%), Positives = 720/985 (73%), Gaps = 65/985 (6%)
Query: 20 PMVGSMDPPRGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPN 79
P+ P G+G +MNAG PSQP Q F P + P+RPG P P QV+SLPN
Sbjct: 29 PVASPHFQPVGRGVPLMNAGLPSQPPQSQFPPSVQQFPSRPGQPGHGPPPS--QVISLPN 86
Query: 80 AQPSNHIPP-SSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQ 138
AQ + H+ SSLP P+V +Y PGLGG G P+++SYTF PSSYGQP + N +
Sbjct: 87 AQANRHVTSGSSLPPPSVPTSINYAPGLGGPGAPLSSSYTFVPSSYGQPPVAANT-VSQY 145
Query: 139 QPMSQMHVPSISAGGQLGVS-VSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQ 197
QP+SQM PSI AGG G S V+QS TP+Q EQ + T P K E
Sbjct: 146 QPISQMRPPSIPAGGLAGSSSVNQSITPVTPMQLNGEQSSVTNDLHPT-----KPNEETT 200
Query: 198 TDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKV 257
DWKEH +A+GRRYY+NKRTR S+W+KPFELMT IERADASTDWKEF SP+GR YYYNK
Sbjct: 201 MDWKEHLAANGRRYYYNKRTRQSSWEKPFELMTPIERADASTDWKEFASPEGRTYYYNKT 260
Query: 258 TKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVE 317
TKQSKW +P+ELKLAR++ EKAS+ Q++T NS P SV KAPS AD SS T +
Sbjct: 261 TKQSKWEIPEELKLARKRLEKASLVEAQADTLANSHVPAFVPPSVDKAPSVADASSLTAQ 320
Query: 318 VIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSI 377
V SSPV V P+ AA + Q S V+ SS+ +N+D
Sbjct: 321 VTPSSPVPVTPVAAAVDLQSQPASESPGLAVMASSLTSNSDEV----------------- 363
Query: 378 GEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQ 437
T+N V S + G S+KV S +EEK V Q
Sbjct: 364 --QTTENIV------------STVSGRSEKVN-----------------SIGIEEKIVSQ 392
Query: 438 EHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYL 497
E Y +KLEAKNAFKALLESA+VGSDWTWDQA+R IINDRRYGALRTLGERK AFNEYL
Sbjct: 393 EPLTYTDKLEAKNAFKALLESASVGSDWTWDQAMRVIINDRRYGALRTLGERKQAFNEYL 452
Query: 498 GQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDR 557
QKKKQDAEERR K KKAR+++K MLEES ELTS+ RWSKAVT+FENDERFKA+ERERDR
Sbjct: 453 SQKKKQDAEERRSKQKKAREEFKNMLEESKELTSTMRWSKAVTLFENDERFKAVERERDR 512
Query: 558 KDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCS 617
+D+FD L EL KERAKAQEERKRNI+EYR+FLESCDFIKA+TQWRKVQDRLEADERCS
Sbjct: 513 RDIFDSFLQELGDKERAKAQEERKRNIMEYRQFLESCDFIKASTQWRKVQDRLEADERCS 572
Query: 618 RLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAK 677
RL+K+DRLEIFQ+YL DLEKEEEEQRKIQKEE K ERKNRDEFRKL+E VA GT+TAK
Sbjct: 573 RLEKIDRLEIFQDYLRDLEKEEEEQRKIQKEEQRKAERKNRDEFRKLLEEHVAAGTMTAK 632
Query: 678 TNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKIT 737
T+WRDY +KVKD P Y+AVASNTSGSTPKDLFEDV+EEL+KQ+ EDK+RIKDAVKL+K+
Sbjct: 633 THWRDYYLKVKDLPAYLAVASNTSGSTPKDLFEDVLEELEKQYHEDKSRIKDAVKLKKVA 692
Query: 738 LSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDL 797
++STWT +D KA+++ED +SP ISD+NLK++FD+LL + KEKEEK+AKKRKRL D+F +L
Sbjct: 693 MASTWTLDDLKAAIVEDISSPSISDMNLKIVFDELLERAKEKEEKDAKKRKRLADDFLNL 752
Query: 798 LCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEFVTQLKEQAKDYERKRKEE 857
L S K+I+A+S WE+C++L EGS+EFSSI +ESIC+ +F+E++ QLKE AK+ ERKRKEE
Sbjct: 753 LHSTKDITASSKWESCKELFEGSREFSSINEESICQDIFEEYIAQLKEHAKENERKRKEE 812
Query: 858 KAKREKEREERDRRKLKQGRDKERAREREKEDHSKKDGADSDH----DDSAENDSKRSGK 913
KAK+EKEREE+DRRK K RDK+R EREKE H KK+ AD+ DD ND+KRS
Sbjct: 813 KAKKEKEREEKDRRKAKHRRDKDRGHEREKE-HMKKEEADTGSADTTDDHFNNDNKRSVN 871
Query: 914 DNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLASTPESENESRHKRHRRDN 973
D++KK RKRH A D L+E+EKDRSK+ HRH+SD KK + ASTP+S+ ESRHKRH+RD+
Sbjct: 872 DSNKKQRKRHHDAEDDLNESEKDRSKSSHRHSSDHKKSKWHASTPDSDGESRHKRHKRDH 931
Query: 974 RNGSRKNGDHEDLEDGEYG--GESR 996
RNGSR+ GDHE+LEDGE+G GE+R
Sbjct: 932 RNGSRRYGDHEELEDGEFGEDGETR 956
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574333|ref|XP_003555303.1| PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224060893|ref|XP_002300284.1| predicted protein [Populus trichocarpa] gi|222847542|gb|EEE85089.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356534266|ref|XP_003535678.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|302142164|emb|CBI19367.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449484509|ref|XP_004156902.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359492532|ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449465095|ref|XP_004150264.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224127228|ref|XP_002320019.1| predicted protein [Populus trichocarpa] gi|222860792|gb|EEE98334.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356554026|ref|XP_003545351.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 996 | ||||||
| TAIR|locus:2091171 | 992 | PRP40B "pre-mRNA-processing pr | 0.783 | 0.786 | 0.449 | 4.9e-181 | |
| TAIR|locus:2194894 | 958 | PRP40A "pre-mRNA-processing pr | 0.608 | 0.632 | 0.458 | 5.4e-158 | |
| RGD|1311401 | 953 | Prpf40a "PRP40 pre-mRNA proces | 0.778 | 0.813 | 0.277 | 1e-75 | |
| UNIPROTKB|O75400 | 957 | PRPF40A "Pre-mRNA-processing f | 0.782 | 0.814 | 0.266 | 1.9e-74 | |
| MGI|MGI:1860512 | 953 | Prpf40a "PRP40 pre-mRNA proces | 0.778 | 0.813 | 0.275 | 1.9e-74 | |
| UNIPROTKB|F1RQH2 | 957 | PRPF40A "Uncharacterized prote | 0.782 | 0.814 | 0.268 | 2.5e-74 | |
| UNIPROTKB|G3MZC7 | 958 | PRPF40A "Uncharacterized prote | 0.789 | 0.820 | 0.261 | 3.1e-74 | |
| DICTYBASE|DDB_G0283543 | 681 | prp40 "FF domain-containing pr | 0.420 | 0.615 | 0.285 | 1.9e-68 | |
| ZFIN|ZDB-GENE-030131-274 | 851 | prpf40a "PRP40 pre-mRNA proces | 0.620 | 0.726 | 0.256 | 6.3e-68 | |
| ASPGD|ASPL0000052549 | 798 | AN1249 [Emericella nidulans (t | 0.407 | 0.508 | 0.257 | 7.6e-63 |
| TAIR|locus:2091171 PRP40B "pre-mRNA-processing protein 40B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 4.9e-181, Sum P(3) = 4.9e-181
Identities = 367/817 (44%), Positives = 490/817 (59%)
Query: 189 QPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPD 248
+P ++ TDW EHTSADGR+Y+FNKRT+ STW+KP ELMT ERADA TDWKE +SPD
Sbjct: 198 KPLPSQKALTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPD 257
Query: 249 GRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPN-SQTSISFPSSVVKAPS 307
GRKYYYNK+TKQS W++P+E+K+ REQAE AS++G +E + S+ ++ AP+
Sbjct: 258 GRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPT 317
Query: 308 SADIXXXXXXXXXXXXXXXXXXXXXXXTQPALXXXXXXXXXXXXXXXANADGFPKTVDAI 367
QPA N D + D
Sbjct: 318 GLP------SQTSTSEGVEKLTLTSDLKQPA-------SVPGSSSPVENVDRVQMSADET 364
Query: 368 APMIDVSSSIGEAV--TDNTVAEA--KNNLS--NMSASDLVGA--SDKVPPPVTEETRKD 419
+ + D S + G +V T+ + A K+ +S N SD + +++ +E++K
Sbjct: 365 SQLCDTSETDGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKP 424
Query: 420 AVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRR 479
V EKV EEK + QE F++ NKLEA + FK+LL+SA VGSDWTW+QA+R IIND+R
Sbjct: 425 MVESEKVESQTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKR 484
Query: 480 YGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAV 539
YGALRTLGERK AFNE+L Q K+ EER + KK +D+K+MLEE VELT STRWSK V
Sbjct: 485 YGALRTLGERKQAFNEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTV 544
Query: 540 TMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKA 599
TMFE+DERFKALERE+DR+++F+DH+ ELK+K R KA E+RKRNIIEY++FLESC+FIK
Sbjct: 545 TMFEDDERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKP 604
Query: 600 NTQWRKVQDRLEADERCSRLDKMDRLEIFXXXXXXXXXXXXXXXXXXXXXXSKTERKNRD 659
N+QWRKVQDRLE DERCSRL+K+D+LEIF K ERK+RD
Sbjct: 605 NSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRD 664
Query: 660 EFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQ 719
EF L++ +A G LTAKT WRDY +KVKD P Y A+ASN+SG+TPKDLFED VE+L+K+
Sbjct: 665 EFHGLLDEHIATGELTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKR 724
Query: 720 FQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIXXXXX 779
E K++IKD +KLRK+ LS+ TF++FK S+ ED P I DV LKL+FDDLL
Sbjct: 725 DHELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEK 784
Query: 780 XXXXXXXXXXXXXXFFDLLCSVKEISATSTWENCRQLLEGSQEFSSIGDESICRGVFDEF 839
D+L S K+I+A+S+WE + L+EGS++ S+IGDES + F+++
Sbjct: 785 EEKEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDY 844
Query: 840 VTQLKEQAKDYXXXXXXXXXXXXXXXXXXXXXXXXQGXXXXXXXXXXXXXHSKKDGADSD 899
V+ LKEQ+ G H KK A
Sbjct: 845 VSLLKEQSN----RIKQNKKVPEDVREEHDKGRDKYGREKDRVRERDSDDHHKKGAAGKY 900
Query: 900 HDDSAE---NDSKRSGKDNDKKHRKRHQSAHDSLDENEKDRSKNPHRHNSDRKKPRRLAS 956
+ D E + +RSG+D+ +HR+RH S + EN+ D K H+ KK R
Sbjct: 901 NHDMNEPHGKERRRSGRDSHNRHRERHTS----VKENDTDHFKESHKAGGGHKKSRHQRG 956
Query: 957 -TPESENESRHKRHRRDNRNGSRKNGDHEDLEDGEYG 992
E+E E + KR R++ +R++ E+LEDGE G
Sbjct: 957 WVSEAEVEGKEKRRRKEE---AREHTKEEELEDGECG 990
|
|
| TAIR|locus:2194894 PRP40A "pre-mRNA-processing protein 40A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| RGD|1311401 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O75400 PRPF40A "Pre-mRNA-processing factor 40 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1860512 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RQH2 PRPF40A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3MZC7 PRPF40A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0283543 prp40 "FF domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-274 prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000052549 AN1249 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4JCC1 | PR35B_ARATH | No assigned EC number | 0.4584 | 0.9357 | 0.9395 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 |
 |
 |
 |
 |
 |
 |
 | estExt_fgenesh4_pm.C_LG_I1075 | hypothetical protein (972 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 996 | |||
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 2e-28 | |
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 1e-15 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 1e-12 | |
| smart00441 | 55 | smart00441, FF, Contains two conserved F residues | 3e-12 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 6e-12 | |
| cd00201 | 31 | cd00201, WW, Two conserved tryptophans domain; als | 9e-09 | |
| pfam00397 | 30 | pfam00397, WW, WW domain | 2e-08 | |
| smart00456 | 33 | smart00456, WW, Domain with 2 conserved Trp (W) re | 3e-08 | |
| cd00201 | 31 | cd00201, WW, Two conserved tryptophans domain; als | 4e-08 | |
| smart00456 | 33 | smart00456, WW, Domain with 2 conserved Trp (W) re | 9e-08 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 1e-07 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 4e-07 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 4e-07 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 5e-07 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 5e-07 | |
| pfam00397 | 30 | pfam00397, WW, WW domain | 8e-07 | |
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 1e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-06 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 8e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-06 | |
| smart00441 | 55 | smart00441, FF, Contains two conserved F residues | 3e-05 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 3e-05 | |
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 7e-05 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 2e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-04 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 8e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.002 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.002 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.003 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.003 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 0.003 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 0.004 |
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-28
Identities = 89/414 (21%), Positives = 182/414 (43%), Gaps = 21/414 (5%)
Query: 445 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 504
K EA+ F +L+ V S W +A+ + + R + RK F +Y ++K
Sbjct: 145 KEEAEKEFITMLKENQVDSTWPIFRAIEELRDPRYWMVDTDPLWRKDLFKKYFENQEKDQ 204
Query: 505 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 564
EE K +K +++ KML + + T W ++F + ++ E+ ++ F +
Sbjct: 205 REEEENKQRKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKY 264
Query: 565 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSR------ 618
D+L E+ + + + L S + W ++ R +
Sbjct: 265 KDKLGCYEKYVGKHMGGTALGRLEEVLRSLGS-ETFIIWLLNHYVFDSVVRYLKNKEMKP 323
Query: 619 LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKT 678
LD+ D L F Y+ LEKE + +K ++ R +RDEFR L+ + G + +
Sbjct: 324 LDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRM 383
Query: 679 NWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITL 738
W++ +KD P ++ + T GS+P DLF D + +L+ + + + + +I+
Sbjct: 384 KWKNAYPLIKDDPRFLNLLGRT-GSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISP 442
Query: 739 SSTWTFEDFKASVLE-----DATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE 793
+ ++ ++ E + + ++ LI D L+ + EK +++ + +R+ ++
Sbjct: 443 TDRRAVDEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQ 502
Query: 794 FFDLLCSVKEISAT-------STWENCRQLLEGSQEFSSIGDE-SICRGVFDEF 839
+ + + T STW+ + L S E+ ++GDE +I R +F++F
Sbjct: 503 KKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDF 556
|
Length = 590 |
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|128718 smart00441, FF, Contains two conserved F residues | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >gnl|CDD|215899 pfam00397, WW, WW domain | Back alignment and domain information |
|---|
| >gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
| >gnl|CDD|215899 pfam00397, WW, WW domain | Back alignment and domain information |
|---|
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|128718 smart00441, FF, Contains two conserved F residues | Back alignment and domain information |
|---|
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 996 | |||
| COG5104 | 590 | PRP40 Splicing factor [RNA processing and modifica | 100.0 | |
| KOG0155 | 617 | consensus Transcription factor CA150 [Transcriptio | 100.0 | |
| KOG0152 | 463 | consensus Spliceosomal protein FBP11/Splicing fact | 100.0 | |
| KOG0155 | 617 | consensus Transcription factor CA150 [Transcriptio | 100.0 | |
| COG5104 | 590 | PRP40 Splicing factor [RNA processing and modifica | 99.9 | |
| KOG0152 | 463 | consensus Spliceosomal protein FBP11/Splicing fact | 99.68 | |
| PF01846 | 51 | FF: FF domain; InterPro: IPR002713 The FF domain m | 99.13 | |
| smart00441 | 55 | FF Contains two conserved F residues. A novel moti | 99.0 | |
| PF01846 | 51 | FF: FF domain; InterPro: IPR002713 The FF domain m | 98.9 | |
| smart00441 | 55 | FF Contains two conserved F residues. A novel moti | 98.86 | |
| PF00397 | 31 | WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp | 98.51 | |
| PF00397 | 31 | WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp | 98.46 | |
| smart00456 | 32 | WW Domain with 2 conserved Trp (W) residues. Also | 98.31 | |
| smart00456 | 32 | WW Domain with 2 conserved Trp (W) residues. Also | 98.3 | |
| cd00201 | 31 | WW Two conserved tryptophans domain; also known as | 98.28 | |
| cd00201 | 31 | WW Two conserved tryptophans domain; also known as | 98.16 | |
| KOG1891 | 271 | consensus Proline binding protein WW45 [General fu | 98.04 | |
| KOG4271 | 1100 | consensus Rho-GTPase activating protein [Signal tr | 97.97 | |
| KOG4271 | 1100 | consensus Rho-GTPase activating protein [Signal tr | 97.91 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.67 | |
| KOG3259 | 163 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 97.29 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.25 | |
| KOG3259 | 163 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 97.18 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 96.95 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 96.91 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.74 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 96.37 | |
| KOG1847 | 878 | consensus mRNA splicing factor [RNA processing and | 95.92 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 95.71 | |
| KOG0940 | 358 | consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos | 94.64 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 94.28 | |
| KOG0150 | 336 | consensus Spliceosomal protein FBP21 [RNA processi | 94.27 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 94.08 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 93.32 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 92.79 | |
| COG5180 | 654 | PBP1 Protein interacting with poly(A)-binding prot | 92.35 | |
| KOG3582 | 856 | consensus Mlx interactors and related transcriptio | 92.23 | |
| KOG3209 | 984 | consensus WW domain-containing protein [General fu | 91.72 | |
| KOG2893 | 341 | consensus Zn finger protein [General function pred | 91.68 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 91.22 | |
| KOG2199 | 462 | consensus Signal transducing adaptor protein STAM/ | 90.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 90.62 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 90.45 | |
| KOG2893 | 341 | consensus Zn finger protein [General function pred | 89.87 | |
| KOG4592 | 728 | consensus Uncharacterized conserved protein [Funct | 89.49 | |
| KOG3209 | 984 | consensus WW domain-containing protein [General fu | 89.12 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 88.47 | |
| KOG0151 | 877 | consensus Predicted splicing regulator, contains R | 88.17 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 88.08 | |
| PF05890 | 271 | Ebp2: Eukaryotic rRNA processing protein EBP2; Int | 87.95 | |
| PF03154 | 982 | Atrophin-1: Atrophin-1 family; InterPro: IPR002951 | 87.92 | |
| KOG0119 | 554 | consensus Splicing factor 1/branch point binding p | 87.78 | |
| KOG4264 | 694 | consensus Nucleo-cytoplasmic protein MLN51 [Genera | 87.66 | |
| KOG2985 | 306 | consensus Uncharacterized conserved protein [Funct | 87.43 | |
| KOG0150 | 336 | consensus Spliceosomal protein FBP21 [RNA processi | 87.04 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 86.52 | |
| KOG1847 | 878 | consensus mRNA splicing factor [RNA processing and | 85.49 | |
| KOG3537 | 543 | consensus Adaptor protein NUMB [Signal transductio | 85.37 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 84.38 | |
| PF09770 | 808 | PAT1: Topoisomerase II-associated protein PAT1; In | 83.84 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 83.76 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 83.67 | |
| KOG4368 | 757 | consensus Predicted RNA binding protein, contains | 83.24 | |
| KOG3753 | 1114 | consensus Circadian clock protein period [Signal t | 83.06 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 82.33 | |
| KOG3600 | 2238 | consensus Thyroid hormone receptor-associated prot | 82.05 | |
| KOG4368 | 757 | consensus Predicted RNA binding protein, contains | 81.36 | |
| KOG2985 | 306 | consensus Uncharacterized conserved protein [Funct | 80.56 | |
| KOG1891 | 271 | consensus Proline binding protein WW45 [General fu | 80.41 | |
| KOG4520 | 238 | consensus Predicted coiled-coil protein [General f | 80.02 |
| >COG5104 PRP40 Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-71 Score=602.03 Aligned_cols=526 Identities=25% Similarity=0.425 Sum_probs=423.9
Q ss_pred CCCCcEEEEcCCCCceeeccCccccccCCCCccchhhhccCCCCCcEEEECCCCCeEEEeCCCCeeeccCChHHHHHHHH
Q 001916 196 VQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQ 275 (996)
Q Consensus 196 ~~~~W~e~~~~~Gr~YYyN~~T~~s~WekP~~l~~~~e~~~~~~~W~e~~~~~Gr~YyyN~~T~es~We~P~~~~~~~e~ 275 (996)
+.+.|.+.+++|||+||||..|+.|+|+||.+++...|..+...+|+++.|.||++||||..|+||+|.+|.+.+....-
T Consensus 13 ~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~KkVe~~ 92 (590)
T COG5104 13 ARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKKVEPI 92 (590)
T ss_pred HHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhccCcH
Confidence 46789999999999999999999999999999998888888889999999999999999999999999999997642110
Q ss_pred HHHhhhcCCCCCCCCCCCCccCCCCCcccCCCCccCCCccchhhccCCCccccccccccCCccccCCCCCCCcccccccc
Q 001916 276 AEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVA 355 (996)
Q Consensus 276 a~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 355 (996)
++ +. . +.+|- .+.++. ..+..
T Consensus 93 ~e----QK------~---~~~S~------------------i~~ngn-------------~~ait--------------- 113 (590)
T COG5104 93 AE----QK------H---DERSM------------------IGGNGN-------------DMAIT--------------- 113 (590)
T ss_pred Hh----hh------h---HHHHH------------------hccCCC-------------ccccc---------------
Confidence 10 00 0 00000 000000 00000
Q ss_pred ccCCCCCcccccCccccccccccccccchhHHHhhhcccccccccccCCCCCCCCCchhhhhhhhcccccccchhHHhhh
Q 001916 356 NADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTV 435 (996)
Q Consensus 356 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ee~kk~~~~~~k~~~~~E~k~~ 435 (996)
++.. ..| +- ..+.....|++.+ . +
T Consensus 114 --~~e~-----~eP--------~~--~~~~~~sQy~~~s------------------------------t-------~-- 137 (590)
T COG5104 114 --DHET-----SEP--------KY--LLGRLMSQYGITS------------------------------T-------K-- 137 (590)
T ss_pred --cccc-----ccc--------hh--HHHHHHHhhcchh------------------------------H-------H--
Confidence 0000 000 00 0011111111110 0 0
Q ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001916 436 EQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRT-LGERKTAFNEYLGQKKKQDAEERRLKLKK 514 (996)
Q Consensus 436 ~~e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t-~~ERKqlFeeYl~~r~keEkeekr~k~kk 514 (996)
..+...|+|+|+.+|..||++++|+|+|+|.++++.+ .|||||.|.+ +.+||.+|++|+.+..+.++++...++.+
T Consensus 138 --~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k 214 (590)
T COG5104 138 --DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRK 214 (590)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Confidence 1122358999999999999999999999999999998 8999998875 67999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001916 515 ARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESC 594 (996)
Q Consensus 515 are~F~~lLee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~~ 594 (996)
.+++|.+||..+..|.+||.|.+|..+|.++|.|+++.++.+++++|++|++.|-.-+++-.+..+..++.+|..+|.++
T Consensus 215 ~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l 294 (590)
T COG5104 215 YINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSL 294 (590)
T ss_pred HHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhc
Confidence 99999999999989999999999999999999999999999999999999999999999988888999999999999998
Q ss_pred ccccCCCcHHHHHHHhhhhhhhhc------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001916 595 DFIKANTQWRKVQDRLEADERCSR------LDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEAD 668 (996)
Q Consensus 595 ~~It~~TtW~ev~~~L~~D~Ry~~------L~~~DrLelFed~I~~LekeeeE~k~~~k~~~rR~eRK~Rd~Fk~LL~e~ 668 (996)
+ -...++|.-.+-.|..++||.. |+..|.|--|.+|++.|+++.--.....+.+..+.+|++||+|+.||.++
T Consensus 295 ~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtLLr~l 373 (590)
T COG5104 295 G-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKL 373 (590)
T ss_pred C-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 7 4577899977777888888853 56678888999999999998876666666677899999999999999999
Q ss_pred HhcCccccCCChHHHHHHhhCChhhhhhhcCCCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccccCCCHHHHH
Q 001916 669 VALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFK 748 (996)
Q Consensus 669 ~~~g~Ita~T~W~d~~~~Ikdd~rf~~l~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~v~stwt~eef~ 748 (996)
.-.|+|+..++|+++||+|+|||||++|+ |++||+|||||+|+|-+|+..|...|+.+.+++..++|.++.+...+++.
T Consensus 374 ~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~vdei~ 452 (590)
T COG5104 374 YSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAVDEIF 452 (590)
T ss_pred hhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccchHHHH
Confidence 99999999999999999999999999997 89999999999999999999999999999999988999888877777776
Q ss_pred HHHh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-Hhhhc--C-CCCCCCCHHHHHHH
Q 001916 749 ASVL-----EDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDE---FFD-LLCSV--K-EISATSTWENCRQL 816 (996)
Q Consensus 749 ~~l~-----ed~r~~~l~~~nlk~iFe~li~r~kEKeeke~rk~rR~~~~---F~~-lLk~~--k-~I~~~stWee~k~~ 816 (996)
+.+. .+..+..|+.+++.+|.+.+|.+.-|+-.......+|+.+. ++. ||..+ + .-...++|+-+-..
T Consensus 453 ~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~t~~~t~k~k~st~D~~~k~ 532 (590)
T COG5104 453 EAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDLASKE 532 (590)
T ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCcchHHHHHHH
Confidence 6654 44557888999999999999876655543333444555443 333 44432 2 44678999999999
Q ss_pred hcCcccccccCCh-hHHHHHHHHHHH
Q 001916 817 LEGSQEFSSIGDE-SICRGVFDEFVT 841 (996)
Q Consensus 817 i~~~~ey~~L~~e-~~r~~~F~efi~ 841 (996)
|....||++|++| ..|+.+|++|--
T Consensus 533 L~Es~E~k~~~DE~N~~Rq~fED~k~ 558 (590)
T COG5104 533 LGESLEYKALGDEDNIRRQIFEDFKP 558 (590)
T ss_pred HhHhHHHHHhcchhHHHHHhhhcCCc
Confidence 9999999999987 567899999864
|
|
| >KOG0155 consensus Transcription factor CA150 [Transcription] | Back alignment and domain information |
|---|
| >KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0155 consensus Transcription factor CA150 [Transcription] | Back alignment and domain information |
|---|
| >COG5104 PRP40 Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] | Back alignment and domain information |
|---|
| >smart00441 FF Contains two conserved F residues | Back alignment and domain information |
|---|
| >PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] | Back alignment and domain information |
|---|
| >smart00441 FF Contains two conserved F residues | Back alignment and domain information |
|---|
| >PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet | Back alignment and domain information |
|---|
| >PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet | Back alignment and domain information |
|---|
| >smart00456 WW Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >smart00456 WW Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >KOG1891 consensus Proline binding protein WW45 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1847 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3582 consensus Mlx interactors and related transcription factors [Transcription] | Back alignment and domain information |
|---|
| >KOG3209 consensus WW domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2893 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2893 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4592 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3209 consensus WW domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences | Back alignment and domain information |
|---|
| >PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene | Back alignment and domain information |
|---|
| >KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2985 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1847 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division [] | Back alignment and domain information |
|---|
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
| >KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription] | Back alignment and domain information |
|---|
| >KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2985 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1891 consensus Proline binding protein WW45 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4520 consensus Predicted coiled-coil protein [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 996 | ||||
| 2l5f_A | 92 | Solution Structure Of The Tandem Ww Domains From Hy | 4e-15 | ||
| 1o6w_A | 75 | Solution Structure Of The Prp40 Ww Domain Pair Of T | 1e-09 | ||
| 2kzg_A | 71 | The Structure Of An Ff Domain From Human HypaFBP11 | 4e-09 | ||
| 2jxw_A | 75 | Solution Structure Of The Tandem Ww Domains Of Fbp2 | 5e-06 | ||
| 2lks_A | 50 | Ff11-60 Length = 50 | 6e-06 | ||
| 2l9v_A | 49 | Nmr Structure Of The Ff Domain L24a Mutant's Foldin | 5e-05 | ||
| 3hfh_A | 190 | Crystal Structure Of Tandem Ff Domains Length = 190 | 2e-04 | ||
| 1e0l_A | 37 | Fbp28ww Domain From Mus Musculus Length = 37 | 8e-04 |
| >pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11 Length = 92 | Back alignment and structure |
|
| >pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75 | Back alignment and structure |
| >pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate At Atomic Resolution Length = 71 | Back alignment and structure |
| >pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21 Length = 75 | Back alignment and structure |
| >pdb|2LKS|A Chain A, Ff11-60 Length = 50 | Back alignment and structure |
| >pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding Transition State Length = 49 | Back alignment and structure |
| >pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains Length = 190 | Back alignment and structure |
| >pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus Length = 37 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 1e-41
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 4/189 (2%)
Query: 445 KLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQD 504
F +L V + TW+ L I+ D RY L ER F++Y+ + +++
Sbjct: 4 GSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLLNPX-ERXQVFDQYVXTRAEEE 62
Query: 505 AEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDH 564
E + +A +D+ M+EE+ +S+ D RF A+E DR+ +F++
Sbjct: 63 RREXXNXIMQAXEDFXXMMEEAX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEF 121
Query: 565 LDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMD- 623
+ + E + + ++ + L + + + ++W V D +E+D R +D
Sbjct: 122 VAAARXXEXEDSXTRGEXIXSDFFELLSNHH-LDSQSRWSXVXDXVESDPRYXAVDSSSM 180
Query: 624 RLEIFQEYL 632
R ++F +Y+
Sbjct: 181 REDLFXQYI 189
|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36 | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36 | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37 | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49 | Back alignment and structure |
|---|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41 | Back alignment and structure |
|---|
| >1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 | Back alignment and structure |
|---|
| >1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
| >2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 85 | Back alignment and structure |
|---|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 996 | |||
| 3hfh_A | 190 | Transcription elongation regulator 1; helix bundle | 100.0 | |
| 3hfh_A | 190 | Transcription elongation regulator 1; helix bundle | 99.93 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 99.8 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 99.79 | |
| 1uzc_A | 71 | Hypothetical protein FLJ21157; nuclear protein, st | 99.74 | |
| 2dod_A | 82 | Transcription elongation regulator 1; FF domain, s | 99.73 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 99.72 | |
| 2b7e_A | 59 | PRE-mRNA processing protein PRP40; structural prot | 99.71 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 99.68 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 99.65 | |
| 2doe_A | 83 | Transcription elongation regulator 1; FF domain, s | 99.31 | |
| 2doe_A | 83 | Transcription elongation regulator 1; FF domain, s | 99.26 | |
| 2cqn_A | 77 | Formin-binding protein 3; FF domain, structural ge | 99.26 | |
| 2juc_A | 59 | PRE-mRNA-splicing factor URN1; FF, helical bundle, | 99.21 | |
| 2dk7_A | 73 | Transcription elongation regulator 1; structural g | 99.07 | |
| 2cqn_A | 77 | Formin-binding protein 3; FF domain, structural ge | 99.06 | |
| 1e0l_A | 37 | Formin binding protein; SH3 domain, WW domain, FBP | 98.98 | |
| 2ysi_A | 40 | Transcription elongation regulator 1; Ca150, FBP28 | 98.88 | |
| 1uzc_A | 71 | Hypothetical protein FLJ21157; nuclear protein, st | 98.85 | |
| 1e0l_A | 37 | Formin binding protein; SH3 domain, WW domain, FBP | 98.78 | |
| 2dod_A | 82 | Transcription elongation regulator 1; FF domain, s | 98.73 | |
| 2dk1_A | 50 | WW domain-binding protein 4; WBP-4, formin- bindin | 98.72 | |
| 1ywi_A | 41 | Formin-binding protein 3; WW domain, class II, pro | 98.7 | |
| 1wr7_A | 41 | NEDD4-2; all-beta, ligase; NMR {Mus musculus} | 98.68 | |
| 1ymz_A | 43 | CC45; artificial protein, computational design, un | 98.68 | |
| 2ysi_A | 40 | Transcription elongation regulator 1; Ca150, FBP28 | 98.67 | |
| 1e0m_A | 37 | Wwprototype; SH3 prototype, protein design, de nov | 98.63 | |
| 2ysh_A | 40 | GAS-7, growth-arrest-specific protein 7; WW domain | 98.63 | |
| 1ymz_A | 43 | CC45; artificial protein, computational design, un | 98.6 | |
| 1wr3_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.6 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 98.58 | |
| 2kyk_A | 39 | E3 ubiquitin-protein ligase itchy homolog; LMP2A, | 98.56 | |
| 1ywi_A | 41 | Formin-binding protein 3; WW domain, class II, pro | 98.56 | |
| 1wr4_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.55 | |
| 2b7e_A | 59 | PRE-mRNA processing protein PRP40; structural prot | 98.54 | |
| 1e0m_A | 37 | Wwprototype; SH3 prototype, protein design, de nov | 98.53 | |
| 2dmv_A | 43 | Itchy homolog E3 ubiquitin protein ligase; WW doma | 98.52 | |
| 2djy_A | 42 | SMAD ubiquitination regulatory factor 2; beta shee | 98.51 | |
| 2ysg_A | 40 | Syntaxin-binding protein 4; synip, STXBP4, WW doma | 98.5 | |
| 2law_A | 38 | Yorkie homolog; YAP, SMAD1, CDK, signal transducti | 98.5 | |
| 2juc_A | 59 | PRE-mRNA-splicing factor URN1; FF, helical bundle, | 98.5 | |
| 2ysf_A | 40 | E3 ubiquitin-protein ligase itchy homolog; AIP4, N | 98.46 | |
| 1wr3_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.44 | |
| 2dk7_A | 73 | Transcription elongation regulator 1; structural g | 98.44 | |
| 1i5h_W | 50 | Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, | 98.44 | |
| 2ysh_A | 40 | GAS-7, growth-arrest-specific protein 7; WW domain | 98.43 | |
| 2kpz_A | 49 | E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV | 98.43 | |
| 2ez5_W | 46 | Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma | 98.41 | |
| 1wr7_A | 41 | NEDD4-2; all-beta, ligase; NMR {Mus musculus} | 98.41 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 98.41 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 98.41 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 98.39 | |
| 2l4j_A | 46 | YES-associated protein 2 (YAP2); WW domain, medaka | 98.39 | |
| 2law_A | 38 | Yorkie homolog; YAP, SMAD1, CDK, signal transducti | 98.39 | |
| 2ysb_A | 49 | Salvador homolog 1 protein; WW domain, structural | 98.38 | |
| 1wr4_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.38 | |
| 2dk1_A | 50 | WW domain-binding protein 4; WBP-4, formin- bindin | 98.38 | |
| 2kyk_A | 39 | E3 ubiquitin-protein ligase itchy homolog; LMP2A, | 98.37 | |
| 2jv4_A | 54 | Peptidyl-prolyl CIS/trans isomerase; ppiase domain | 98.37 | |
| 2zaj_A | 49 | Membrane-associated guanylate kinase, WW and PDZ d | 98.33 | |
| 2ysg_A | 40 | Syntaxin-binding protein 4; synip, STXBP4, WW doma | 98.33 | |
| 2dmv_A | 43 | Itchy homolog E3 ubiquitin protein ligase; WW doma | 98.32 | |
| 2kpz_A | 49 | E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV | 98.31 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 98.3 | |
| 1e0n_A | 27 | Hypothetical protein; YJQ8WW domain, WW domain, sa | 98.3 | |
| 2ysf_A | 40 | E3 ubiquitin-protein ligase itchy homolog; AIP4, N | 98.3 | |
| 1e0n_A | 27 | Hypothetical protein; YJQ8WW domain, WW domain, sa | 98.28 | |
| 2djy_A | 42 | SMAD ubiquitination regulatory factor 2; beta shee | 98.27 | |
| 2ysc_A | 39 | Amyloid beta A4 precursor protein-binding family B | 98.27 | |
| 2ez5_W | 46 | Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma | 98.25 | |
| 2ysd_A | 57 | Membrane-associated guanylate kinase, WW and PDZ d | 98.25 | |
| 2jv4_A | 54 | Peptidyl-prolyl CIS/trans isomerase; ppiase domain | 98.25 | |
| 2l4j_A | 46 | YES-associated protein 2 (YAP2); WW domain, medaka | 98.24 | |
| 2ho2_A | 38 | Fe65 protein, amyloid beta A4 protein-binding fami | 98.23 | |
| 1i5h_W | 50 | Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, | 98.22 | |
| 2jmf_A | 53 | E3 ubiquitin-protein ligase suppressor of deltex; | 98.21 | |
| 2ysb_A | 49 | Salvador homolog 1 protein; WW domain, structural | 98.2 | |
| 2yse_A | 60 | Membrane-associated guanylate kinase, WW and PDZ d | 98.2 | |
| 2ho2_A | 38 | Fe65 protein, amyloid beta A4 protein-binding fami | 98.17 | |
| 2zaj_A | 49 | Membrane-associated guanylate kinase, WW and PDZ d | 98.16 | |
| 2jx8_A | 52 | Hpcif1, phosphorylated CTD-interacting factor 1; p | 98.15 | |
| 2jmf_A | 53 | E3 ubiquitin-protein ligase suppressor of deltex; | 98.1 | |
| 2jx8_A | 52 | Hpcif1, phosphorylated CTD-interacting factor 1; p | 98.09 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 98.07 | |
| 2yse_A | 60 | Membrane-associated guanylate kinase, WW and PDZ d | 98.06 | |
| 2ysd_A | 57 | Membrane-associated guanylate kinase, WW and PDZ d | 98.05 | |
| 2ysc_A | 39 | Amyloid beta A4 precursor protein-binding family B | 98.02 | |
| 2e45_A | 55 | Fe65 protein, amyloid beta A4 precursor protein-bi | 97.99 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 97.99 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 97.97 | |
| 1jmq_A | 46 | YAP65, 65 kDa YES-associated protein; polyproline | 97.96 | |
| 1jmq_A | 46 | YAP65, 65 kDa YES-associated protein; polyproline | 97.9 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 97.89 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 97.84 | |
| 2e45_A | 55 | Fe65 protein, amyloid beta A4 precursor protein-bi | 97.82 | |
| 2dof_A | 85 | Transcription elongation regulator 1; FF domain, s | 97.76 | |
| 2kfd_A | 69 | PRE-mRNA-processing protein PRP40; FF domain, mRNA | 97.68 | |
| 2dof_A | 85 | Transcription elongation regulator 1; FF domain, s | 97.48 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 97.35 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 97.32 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 97.12 | |
| 1eg3_A | 261 | Dystrophin; EF-hand like domain, WW domain, struct | 96.65 | |
| 1eg3_A | 261 | Dystrophin; EF-hand like domain, WW domain, struct | 96.44 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 95.56 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 94.81 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 94.04 | |
| 2kfd_A | 69 | PRE-mRNA-processing protein PRP40; FF domain, mRNA | 93.83 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 92.9 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 85.18 | |
| 3le4_A | 79 | Microprocessor complex subunit DGCR8; WW motif, di | 82.44 |
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=338.14 Aligned_cols=186 Identities=23% Similarity=0.437 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001916 444 NKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKML 523 (996)
Q Consensus 444 tkeEAk~aFk~ML~e~~V~s~~tWeka~~~ii~DpRY~al~t~~ERKqlFeeYl~~r~keEkeekr~k~kkare~F~~lL 523 (996)
|+++|+.+|++||++++|+++|+|+++|+.|++||||++| ++++||++|++||.++.++++++++.+.++++++|.+||
T Consensus 3 s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL 81 (190)
T 3hfh_A 3 LGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMM 81 (190)
T ss_dssp CSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHhccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcH
Q 001916 524 EESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQW 603 (996)
Q Consensus 524 ee~~~I~~~TrW~~a~~~f~~DpRfkAv~~e~ERe~lFeeYi~~LkkkEke~~r~~rkra~~ef~~lL~~~~~It~~TtW 603 (996)
+++ .|+++++|.+|..+|.+||||++|.++.||++||++||..|+++++++.+..+++++.+|.+||.++ .|++.|+|
T Consensus 82 ~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W 159 (190)
T 3hfh_A 82 EEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRW 159 (190)
T ss_dssp --------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCH
T ss_pred HHc-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCCH
Confidence 997 6999999999999999999999998889999999999999999999998999999999999999998 59999999
Q ss_pred HHHHHHhhhhhhhhcCCcc-cHHHHHHHHH
Q 001916 604 RKVQDRLEADERCSRLDKM-DRLEIFQEYL 632 (996)
Q Consensus 604 ~ev~~~L~~D~Ry~~L~~~-DrLelFed~I 632 (996)
.+|+..|.+|++|.+|+.. +|++||++||
T Consensus 160 ~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi 189 (190)
T 3hfh_A 160 SXVXDXVESDPRYXAVDSSSMREDLFXQYI 189 (190)
T ss_dssp HHHHHHHSSSHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHhhcCCCHHHHHHHHHHHh
Confidence 9999999999999999985 9999999998
|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A | Back alignment and structure |
|---|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* | Back alignment and structure |
|---|
| >2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* | Back alignment and structure |
|---|
| >2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} | Back alignment and structure |
|---|
| >2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} | Back alignment and structure |
|---|
| >2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* | Back alignment and structure |
|---|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A | Back alignment and structure |
|---|
| >2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} | Back alignment and structure |
|---|
| >2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} | Back alignment and structure |
|---|
| >2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A | Back alignment and structure |
|---|
| >1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* | Back alignment and structure |
|---|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A | Back alignment and structure |
|---|
| >2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A | Back alignment and structure |
|---|
| >2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* | Back alignment and structure |
|---|
| >1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... | Back alignment and structure |
|---|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... | Back alignment and structure |
|---|
| >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A | Back alignment and structure |
|---|
| >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} | Back alignment and structure |
|---|
| >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} | Back alignment and structure |
|---|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
| >3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 996 | ||||
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 3e-17 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 2e-11 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 3e-05 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 0.003 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 2e-15 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 5e-12 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 2e-07 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 1e-06 | |
| d2b7ea1 | 56 | a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP | 4e-15 | |
| d1o6wa2 | 46 | b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's | 2e-13 | |
| d1o6wa2 | 46 | b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's | 3e-09 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 3e-13 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 3e-11 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 2e-05 | |
| d2rm0w1 | 37 | b.72.1.1 (W:1-37) Formin binding protein FBP28 dom | 5e-13 | |
| d2rm0w1 | 37 | b.72.1.1 (W:1-37) Formin binding protein FBP28 dom | 4e-11 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 3e-12 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 6e-12 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 3e-06 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 0.002 | |
| d2dk1a1 | 38 | b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP | 9e-11 | |
| d2dk1a1 | 38 | b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP | 1e-10 | |
| d1o6wa1 | 29 | b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y | 2e-10 | |
| d1o6wa1 | 29 | b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y | 6e-10 | |
| d1ywia1 | 28 | b.72.1.1 (A:15-42) Huntingtin-interacting protein | 3e-10 | |
| d1ywia1 | 28 | b.72.1.1 (A:15-42) Huntingtin-interacting protein | 9e-10 | |
| d1i5hw_ | 50 | b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain | 1e-05 | |
| d1i5hw_ | 50 | b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain | 4e-04 | |
| d1tk7a1 | 45 | b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) | 2e-05 | |
| d1tk7a1 | 45 | b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) | 5e-04 | |
| d1pina1 | 34 | b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho | 5e-05 | |
| d1pina1 | 34 | b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho | 0.002 | |
| d2jmfa1 | 33 | b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII | 7e-05 | |
| d2jmfa1 | 33 | b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII | 9e-04 | |
| d1jmqa_ | 46 | b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens | 1e-04 | |
| d1jmqa_ | 46 | b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens | 0.003 | |
| d1v9da_ | 332 | a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 | 0.003 |
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Another 3-helical bundle superfamily: FF domain family: FF domain domain: Hypa/FBP11 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (184), Expect = 3e-17
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 436 EQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNE 495
++ + + K EAK AFK LL+ V S+ +W+QA++ IIND RY AL L E+K AFN
Sbjct: 3 AKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA 62
Query: 496 YLGQKKK 502
Y Q +K
Sbjct: 63 YKVQTEK 69
|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 | Back information, alignment and structure |
|---|
| >d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 996 | |||
| d2b7ea1 | 56 | Pre-mRNA-processing protein PRP40 {Baker's yeast ( | 99.69 | |
| d1uzca_ | 69 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2doda1 | 69 | Transcription elongation regulator 1 {Human (Homo | 99.54 | |
| d2doea1 | 70 | Transcription elongation regulator 1 {Human (Homo | 99.43 | |
| d2dofa1 | 72 | Transcription elongation regulator 1 {Human (Homo | 99.41 | |
| d2doea1 | 70 | Transcription elongation regulator 1 {Human (Homo | 99.18 | |
| d2rm0w1 | 37 | Formin binding protein FBP28 domain {Domestic mous | 99.16 | |
| d2dofa1 | 72 | Transcription elongation regulator 1 {Human (Homo | 99.15 | |
| d1o6wa1 | 29 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 99.12 | |
| d1ywia1 | 28 | Huntingtin-interacting protein HYPA/FBP11 {Human ( | 99.09 | |
| d2cqna1 | 64 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1uzca_ | 69 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 99.02 | |
| d1o6wa2 | 46 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 99.02 | |
| d2dk1a1 | 38 | WW domain-binding protein 4, WBP4 {Human (Homo sap | 99.01 | |
| d2doda1 | 69 | Transcription elongation regulator 1 {Human (Homo | 98.97 | |
| d2rm0w1 | 37 | Formin binding protein FBP28 domain {Domestic mous | 98.96 | |
| d1o6wa2 | 46 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.94 | |
| d1o6wa1 | 29 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.89 | |
| d1ywia1 | 28 | Huntingtin-interacting protein HYPA/FBP11 {Human ( | 98.86 | |
| d2dk1a1 | 38 | WW domain-binding protein 4, WBP4 {Human (Homo sap | 98.74 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 98.68 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 98.54 | |
| d1pina1 | 34 | Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId | 98.54 | |
| d2b7ea1 | 56 | Pre-mRNA-processing protein PRP40 {Baker's yeast ( | 98.52 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 98.47 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 98.46 | |
| d1pina1 | 34 | Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 98.37 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 98.34 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 98.32 | |
| d2cqna1 | 64 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 98.3 | |
| d2ho2a1 | 33 | Amyloid beta A4 precursor protein-binding family B | 97.45 | |
| d2ho2a1 | 33 | Amyloid beta A4 precursor protein-binding family B | 97.13 | |
| d1eg3a3 | 38 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d1eg3a3 | 38 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 91.88 | |
| d2ysca1 | 26 | Amyloid beta A4 precursor protein-binding family B | 85.48 |
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Another 3-helical bundle superfamily: FF domain family: FF domain domain: Pre-mRNA-processing protein PRP40 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=6.1e-18 Score=137.23 Aligned_cols=54 Identities=26% Similarity=0.517 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHH-hcCccccccCCh-HHHHHHHHHHHHHH
Q 001916 447 EAKNAFKALLESANVGSDWTWDQALRAI-INDRRYGALRTL-GERKTAFNEYLGQK 500 (996)
Q Consensus 447 EAk~aFk~ML~e~~V~s~~tWeka~~~i-i~DpRY~al~t~-~ERKqlFeeYl~~r 500 (996)
||+++|++||++++|+++|||+++|+.| ++||||++|+++ .|||++||+||++|
T Consensus 1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~R 56 (56)
T d2b7ea1 1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 56 (56)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhcC
Confidence 6899999999999999999999999986 679999999765 59999999999863
|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|