Citrus Sinensis ID: 001941

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990---

MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKLLNRKIVIIWPEALNC

ccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccEEEccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHccccEEEccccccccccccccccccccccEEEEcccccEEEEEEccccHHHHHHHHHHHHccccEEEccEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccEEEEEccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEccccHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccEEcccccHHHHHHHHHHHHcccccccccccccccHHHHHccccccEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHccHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHcccEEEEcccccccccccccccccHHccccEEEcccccHHEEEEHccccHccHHHHHHHHHcccEEccccHHHHHccccEEEEEEEEEcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccEEEEEEEEcccccccEEEEcccccccccEEEEEccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHcccEEEccccEEEEEEEEEEccccEEEEEEcccccccccccccccccccccHccccccHccccccccccccccEEEEEEEEcccccccHHHHHHHHcHcccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccEEEEEEEccccccccccccccccccccccccHHccccEEEEEcccHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHccccEEEEEEccHHHHHHHHHHHHHcccEEEEcccHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHcccEEEEEHHHHHHHHHHHHHccccccccccccHHHccc

MSLLHVFGFGLKVGHLLWMLCCWIVSVISMncfmnyeskdtktdLRGEVFKMWLNCWerisgnsyyIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTfhhgknpsaidqmTFTRYtertaferpltsGVAYAVRVLRSEREEFEKQQGwtikrmdtfehnpvhkdepspieeeyapvifaqDTVSHVISLdmlsgkedRENVLRARAsgkgvltapfrllkTNRLGVILTFAVYkrelpsnatpnerieatdgylggiFDIESLVEKLLHQLASKQTIFVNVYDitnlshpismygsnvsddglWLVSTlnfgdpfrkhemrcrfkqkapwpllaiSTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHeirtpmngvLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSlfsgksqdkGVELAVYISdrvpetligdpgRFRQIITNLMgnsikfteKGHIFVTVYLVEEVVDSIEVETELssskntlsgypvadrchswkgfktfnqdgstspfksssaDLINLIVSVedtgqgipleaqsriftpfmqvgpsisrthggtgiGLSISKYLVGRMKgeigfvsipnigstfTFTAVfgngsstsnehnsqqmnnqpnsvssefqgmkalvvdprpirakvSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIsssrantstdgvsipsvimkpLRSSMLAASLQRAMgvgnkgnirnwelpsmSLRHLLLGRKilivddnnvNLKVAAAGLKRYGAAVVCVERGKkatellmpphqfdacfmdiqmpemdgyemlpcFESFLLIAILVWKLNLKISWKRSYKLLNRKIVIiwpealnc

MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTErtaferpltsgvAYAVRVLRSEREefekqqgwtikrmdtfehnpVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRArasgkgvltapfrllktnrLGVILTFAVykrelpsnatpneriEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLatvsheirtPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISdrvpetligdpgRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETelssskntlsgypvADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPsisrthggtgIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISssrantstdgvsipsviMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWkrsykllnrkiviiwpealnc

**LLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMS********************MLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRS*********GWTIK********************EYAPVIFAQDTVSHVISLDMLS*******VLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNA**NERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL*****TLSGYPVADRCHSWKGFKTF**************DLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG*****************************ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI*****************I*********AASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKLLNRKIVIIWPEA***

**LLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYES************KMWLNCWERISGN*******************TWWRKVLITWLLFWTLVSLWIFWYMSSQA******ALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTF**************EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT************SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS****************SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS****TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKLLNRKIVIIWPEALNC

MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS*******************SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKLLNRKIVIIWPEALNC

*SLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL******LSGYPV**RCHSWKGFKTFN************ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS****************SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG**************LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKLLNRKIVIIWPE*LNC

iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRxxxxxxxxxxxxxxxxxxxxxDVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKLLNRKIVIIWPEALNC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		993	2.2.26 [Sep-21-2011]
Q9C5U1		1036	Histidine kinase 3 OS=Ara	yes	no	0.936	0.897	0.700	0.0
Q9C5U2		1176	Histidine kinase 2 OS=Ara	no	no	0.861	0.727	0.560	0.0
Q9C5U0		1080	Histidine kinase 4 OS=Ara	no	no	0.855	0.787	0.544	0.0
Q54YZ9		2062	Hybrid signal transductio	yes	no	0.446	0.214	0.332	5e-59
P0AEC5		918	Signal transduction histi	N/A	no	0.432	0.467	0.310	3e-53
P0AEC6		918	Signal transduction histi	yes	no	0.432	0.467	0.310	3e-53
P0AEC7		918	Signal transduction histi	N/A	no	0.432	0.467	0.310	3e-53
P48027		907	Sensor protein GacS OS=Ps	N/A	no	0.453	0.496	0.300	1e-49
Q86CZ2		1213	Hybrid signal transductio	no	no	0.301	0.246	0.335	1e-48
P59342		918	Signal transduction histi	yes	no	0.233	0.252	0.392	4e-48

>sp\|Q9C5U1\|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1	Back alignment and function desciption

 Score = 1317 bits (3408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/969 (70%), Positives = 767/969 (79%), Gaps = 39/969 (4%)

Query: 1   MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEV----------- 49
           MSL HV GFG+K+GHL WMLCCW VS      F++   +D    L G V           
Sbjct: 1   MSLFHVLGFGVKIGHLFWMLCCWFVS-----WFVDNGIEDKSGLLVGSVGDLEKTKMTTL 55

Query: 50  ---FKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWY 106
               KMW   W +IS +   I    YQ +GS +  + WWRK+++ W++FW LVS+W FWY
Sbjct: 56  KKKNKMWF--WNKISSSGLKIPSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWTFWY 113

Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
            SSQA EKR+E L SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGK PSAIDQ TF+
Sbjct: 114 FSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFS 173

Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------E 219
            YT+RT+FERPLTSGVAYA+RVL SEREEFE+QQGWTI++M + E NPVHKD       E
Sbjct: 174 EYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALE 233

Query: 220 PSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLG 279
           PSP++EEYAPVIFAQDTVSHV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRLG
Sbjct: 234 PSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLG 293

Query: 280 VILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDIT 339
           VILTFAVYKR+LPSNATP ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYDIT
Sbjct: 294 VILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDIT 353

Query: 340 NLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIA 399
           N S PISMYG+NVS DGL  VS L FGDP RKHEMRCRFKQK PWP+L++ TS GILVIA
Sbjct: 354 NHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIA 413

Query: 400 SLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 459
            LV HI  ATV+RI KVEED   M +LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML
Sbjct: 414 LLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 473

Query: 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519
            MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR ILDDV
Sbjct: 474 HMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDV 533

Query: 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579
           LSLFS KSQ KGVELAVYISDRVP+ LIGDPGRFRQI+TNLMGNSIKFTEKGHIFVTV+L
Sbjct: 534 LSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHL 593

Query: 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 639
           V+E+ +SI+ ET  SS ++TLSG PVADR  SW+ FK F+ +G  S F+ S  D INLIV
Sbjct: 594 VDELFESIDGETA-SSPESTLSGLPVADRQRSWENFKAFSSNGHRS-FEPSPPD-INLIV 650

Query: 640 SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699
           SVEDTG GIP+EAQSRIFTPFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGF S P 
Sbjct: 651 SVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPK 710

Query: 700 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
           +GSTFTFTAVF NG   +   N    NNQP  + SEF+GMKA+VVD RP RAKVS YH Q
Sbjct: 711 VGSTFTFTAVFSNGMQPAERKND---NNQP--IFSEFRGMKAVVVDHRPARAKVSWYHFQ 765

Query: 760 RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819
           RLGI+VEVV    Q L  +  G+  +NMIL+EQE+W ++      F+  L+K       K
Sbjct: 766 RLGIRVEVVPRVEQALHYLKIGTTTVNMILIEQEIWNREADD---FIKKLQKDPLFLSPK 822

Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
           L LLANS+ SS +     G+  P VI+KPLR+SMLAA+LQR +G+G +   ++   P++ 
Sbjct: 823 LILLANSVESSISEALCTGIDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALI 882

Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
           LR+LLLGRKILIVDDNNVNL+VAA  LK+YGA VVC E G KA  LL PPH+FDACFMDI
Sbjct: 883 LRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDI 942

Query: 940 QMPEMDGYE 948
           QMPEMDG+E
Sbjct: 943 QMPEMDGFE 951

Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feed phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. Involved in meristems establishment in seedlings. Redundant negative regulator of drought and salt stress responses and abscisic acid (ABA) signaling. Together with AHK2, plays a negative regulatory role in cold stress signaling via inhibition of ABA response, occurring independently of the cold acclimation pathway. Redundant positive regulator of cytokinin signaling that regulates many development process including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Can interact with isoprenoid-type cytokinins trans-zeatin (tZ and tZR), cis-zeatin (cZ), dihydrozeatin (DZ), buta-2,3-dienyladenine (HA-8), penta-2,3-dienyladenine (HA-1), 4-methyl-penta-2,3-dienyladenine (HA-10), 4-hydroxy-2-butynyladenine (RM1), 2-propynyladenine (RM3), 2-butynyladenine (RM6), and cytokinin ribosides and ribotides. Together with AHK4, involved in the cytokinin-dependent responses to Pi starvation and sucrose stresses. Promotes cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator ARR2. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Contributes to vascular bundle formation and secondary growth in a cytokinin-dependent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Plays a role in the cytokinin-mediated repression of the iron uptake pathway. Required by the cytokinin-dependent flower development regulation pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3

>sp\|Q9C5U2\|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1	Back alignment and function description

>sp\|Q9C5U0\|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1	Back alignment and function description

>sp\|Q54YZ9\|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2	Back alignment and function description

>sp\|P0AEC5\|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia coli (strain K12) GN=barA PE=1 SV=1	Back alignment and function description

>sp\|P0AEC6\|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA PE=1 SV=1	Back alignment and function description

>sp\|P0AEC7\|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O157:H7 GN=barA PE=3 SV=1	Back alignment and function description

>sp\|P48027\|GACS_PSESY Sensor protein GacS OS=Pseudomonas syringae pv. syringae GN=gacS PE=3 SV=1	Back alignment and function description

>sp\|Q86CZ2\|DHKK_DICDI Hybrid signal transduction histidine kinase K OS=Dictyostelium discoideum GN=dhkK PE=1 SV=1	Back alignment and function description

>sp\|P59342\|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella flexneri GN=barA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		993
190148357		1053	histidine kinase 3 [Betula pendula]	0.953	0.899	0.792	0.0
190148361		1019	histidine kinase 3B [Populus trichocarpa	0.951	0.927	0.783	0.0
224075549		1029	histidine kinase cytokinin receptor [Pop	0.951	0.918	0.775	0.0
225425392		1039	PREDICTED: histidine kinase 3 [Vitis vin	0.953	0.911	0.783	0.0
224053503		1020	histidine kinase cytokinin receptor [Pop	0.952	0.927	0.765	0.0
255547688		1005	histidine kinase 1, 2, 3 plant, putative	0.918	0.907	0.781	0.0
356512385		1030	PREDICTED: histidine kinase 3-like [Glyc	0.951	0.917	0.746	0.0
356525172		1030	PREDICTED: histidine kinase 3-like [Glyc	0.951	0.917	0.743	0.0
116109353		1027	histidine kinase 1 [Medicago sativa]	0.951	0.920	0.730	0.0
357462961		1047	Histidine kinase [Medicago truncatula] g	0.951	0.902	0.720	0.0

>gi\|190148357\|gb\|ACE63261.1\| histidine kinase 3 [Betula pendula]	Back alignment and taxonomy information

 Score = 1538 bits (3983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/955 (79%), Positives = 823/955 (86%), Gaps = 8/955 (0%)

Query: 1   MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
           MSLL+V GFGLKVGHLLWMLC WIVSVISMN F+N    D+KT L  +  KMWL CWE+I
Sbjct: 1   MSLLNVVGFGLKVGHLLWMLCYWIVSVISMNWFINSGIMDSKTGLLSDSSKMWLRCWEKI 60

Query: 61  SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
           SGNS  I H Y Q  GSKRV + WWRK+LITW+  WT+VSLWIFWY+SSQATEKR+E+L 
Sbjct: 61  SGNSCKIQHHYSQYFGSKRVPKEWWRKLLITWVFGWTIVSLWIFWYLSSQATEKRKESLA 120

Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
           SMCDERARMLQDQFNVSMNH+QAMSI+IS FHHGKNPSAIDQ TF RYTERTAFERPLTS
Sbjct: 121 SMCDERARMLQDQFNVSMNHIQAMSIMISIFHHGKNPSAIDQRTFARYTERTAFERPLTS 180

Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
           GVAYAVRVL SERE+FEKQQGWTIKRMDT E NPVH+D       EPSPI+EEYAPVIFA
Sbjct: 181 GVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHEDDYAPEALEPSPIQEEYAPVIFA 240

Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
           QDT+SHV+SLDMLSGKEDRENVL AR SGKGVLTAPF+LLKTNRLGVILTFAVYK +LPS
Sbjct: 241 QDTISHVVSLDMLSGKEDRENVLLARESGKGVLTAPFKLLKTNRLGVILTFAVYKTDLPS 300

Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
           NATPNERI+ATDGYLGG+FDIESLVEKLL QLASKQTI VNVYD TN SHPISMYGSNVS
Sbjct: 301 NATPNERIQATDGYLGGVFDIESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSNVS 360

Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
           DDGL   S LNFGDPFRKHEM CRFKQK PWP LAI+TSIGILVIA LVG+IF ATVNRI
Sbjct: 361 DDGLQHGSALNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGYIFHATVNRI 420

Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
           AKVE+D   M ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT+LDVTQQD
Sbjct: 421 AKVEDDCQKMTELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQD 480

Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
           YVRTAQ SGKALVSLINEVLDQAK+ESG+LELEAV F+LRAILDDVLSLFSGKS   GVE
Sbjct: 481 YVRTAQDSGKALVSLINEVLDQAKIESGRLELEAVQFDLRAILDDVLSLFSGKSPGNGVE 540

Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
           LAVYISD+VPE LIGD GRFRQIITNLMGNSIKFTEKGHIFVTV+LVEEV+ SIEVETE 
Sbjct: 541 LAVYISDQVPEMLIGDAGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEEVIGSIEVETE- 599

Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
           SSS NTLSG+PVADR  SW GF+TF+Q+GST P  SSS+DLINLIVSVEDTG GIP EAQ
Sbjct: 600 SSSNNTLSGFPVADRKSSWDGFRTFSQEGSTCPLSSSSSDLINLIVSVEDTGVGIPREAQ 659

Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
           SR+FTPFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGFVSIPN GSTFTFTAVF N 
Sbjct: 660 SRVFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSIPNTGSTFTFTAVFTNA 719

Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
           SS  NE+ S Q+NNQ  S SSEFQGM ALVVDPRP+RAKVSRYHIQRLGI+VE+V D  Q
Sbjct: 720 SSHPNEYKSLQINNQSKSTSSEFQGMTALVVDPRPVRAKVSRYHIQRLGIRVELVPDLNQ 779

Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
             + I+SG+  I+M+LVEQEVW++D+ ++ LF+N  +K       KLFLLAN I SS+  
Sbjct: 780 GFANISSGNTAIDMVLVEQEVWDRDSGIAVLFINKFKKSYSRIPPKLFLLANPIGSSKTR 839

Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
            +T     P VIMKPLR+SML+ASLQRAMGVGNKGN RN ELP  SLR+LLLGRKILIVD
Sbjct: 840 AATSDDYTPPVIMKPLRASMLSASLQRAMGVGNKGNPRNGELPGSSLRNLLLGRKILIVD 899

Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
           DNNVNL+VAA  LK+YGA VVC E GKKA  LL PPH FDACFMDIQMPE+DG+E
Sbjct: 900 DNNVNLRVAAGALKKYGADVVCAESGKKAISLLKPPHHFDACFMDIQMPEIDGFE 954

Source: Betula pendula

Species: Betula pendula

Genus: Betula

Family: Betulaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|190148361\|gb\|ACE63263.1\| histidine kinase 3B [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224075549\|ref\|XP_002304678.1\| histidine kinase cytokinin receptor [Populus trichocarpa] gi\|222842110\|gb\|EEE79657.1\| histidine kinase cytokinin receptor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225425392\|ref\|XP_002276961.1\| PREDICTED: histidine kinase 3 [Vitis vinifera] gi\|297738469\|emb\|CBI27670.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224053503\|ref\|XP_002297846.1\| histidine kinase cytokinin receptor [Populus trichocarpa] gi\|190148359\|gb\|ACE63262.1\| histidine kinase 3A [Populus trichocarpa] gi\|222845104\|gb\|EEE82651.1\| histidine kinase cytokinin receptor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255547688\|ref\|XP_002514901.1\| histidine kinase 1, 2, 3 plant, putative [Ricinus communis] gi\|223545952\|gb\|EEF47455.1\| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356512385\|ref\|XP_003524900.1\| PREDICTED: histidine kinase 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356525172\|ref\|XP_003531201.1\| PREDICTED: histidine kinase 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|116109353\|gb\|ABJ74169.1\| histidine kinase 1 [Medicago sativa]	Back alignment and taxonomy information

>gi\|357462961\|ref\|XP_003601762.1\| Histidine kinase [Medicago truncatula] gi\|355490810\|gb\|AES72013.1\| Histidine kinase [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		993
TAIR\|locus:2015964		1036	HK3 "histidine kinase 3" [Arab	0.941	0.902	0.702	0.0
TAIR\|locus:2177261		1176	HK2 "histidine kinase 2" [Arab	0.849	0.717	0.571	4.7e-251
TAIR\|locus:2059718		1080	WOL "WOODEN LEG" [Arabidopsis	0.709	0.652	0.567	2.3e-204
TIGR_CMR\|CPS_4165		1683	CPS_4165 "sensory box histidin	0.202	0.119	0.387	6.9e-54
DICTYBASE\|DDB_G0269204		1699	dhkE "histidine kinase E" [Dic	0.342	0.200	0.338	2.4e-51
UNIPROTKB\|Q9KPC0		927	VC_2453 "Sensor histidine kina	0.343	0.367	0.299	1.8e-50
TIGR_CMR\|VC_2453		927	VC_2453 "sensor histidine kina	0.343	0.367	0.299	1.8e-50
TIGR_CMR\|GSU_2314		1025	GSU_2314 "sensory box histidin	0.184	0.178	0.392	2e-48
TIGR_CMR\|CPS_4117		948	CPS_4117 "sensor histidine kin	0.179	0.187	0.390	2.3e-47
TIGR_CMR\|SPO_0132		739	SPO_0132 "sensor histidine kin	0.252	0.339	0.357	7e-47

TAIR\|locus:2015964 HK3 "histidine kinase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3334 (1178.7 bits), Expect = 0., P = 0.
 Identities = 677/964 (70%), Positives = 765/964 (79%)

Query:     1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYES---------KDTKTDLRGEVFK 51
             MSL HV GFG+K+GHL WMLCCW VS    N   +            + TK     +  K
Sbjct:     1 MSLFHVLGFGVKIGHLFWMLCCWFVSWFVDNGIEDKSGLLVGSVGDLEKTKMTTLKKKNK 60

Query:    52 MWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQA 111
             MW   W +IS +   I    YQ +GS +  + WWRK+++ W++FW LVS+W FWY SSQA
Sbjct:    61 MWF--WNKISSSGLKIPSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWTFWYFSSQA 118

Query:   112 TEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTER 171
              EKR+E L SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGK PSAIDQ TF+ YT+R
Sbjct:   119 MEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFSEYTDR 178

Query:   172 TAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIE 224
             T+FERPLTSGVAYA+RVL SEREEFE+QQGWTI++M + E NPVHKD       EPSP++
Sbjct:   179 TSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALEPSPVQ 238

Query:   225 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTF 284
             EEYAPVIFAQDTVSHV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRLGVILTF
Sbjct:   239 EEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLGVILTF 298

Query:   285 AVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHP 344
             AVYKR+LPSNATP ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYDITN S P
Sbjct:   299 AVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDITNHSQP 358

Query:   345 ISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
             ISMYG+NVS DGL  VS L FGDP RKHEMRCRFKQK PWP+L++ TS GILVIA LV H
Sbjct:   359 ISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLVAH 418

Query:   405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
             I  ATV+RI KVEED   M +LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML MLMD
Sbjct:   419 IIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMD 478

Query:   465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
             TELDVTQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR ILDDVLSLFS
Sbjct:   479 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFS 538

Query:   525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
              KSQ KGVELAVYISDRVP+ LIGDPGRFRQI+TNLMGNSIKFTEKGHIFVTV+LV+E+ 
Sbjct:   539 SKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELF 598

Query:   585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
             +SI+ ET  SS ++TLSG PVADR  SW+ FK F+ +G  S F+ S  D INLIVSVEDT
Sbjct:   599 ESIDGETA-SSPESTLSGLPVADRQRSWENFKAFSSNGHRS-FEPSPPD-INLIVSVEDT 655

Query:   645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
             G GIP+EAQSRIFTPFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGF S P +GSTF
Sbjct:   656 GVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTF 715

Query:   705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
             TFTAVF NG   +   N    NNQP  + SEF+GMKA+VVD RP RAKVS YH QRLGI+
Sbjct:   716 TFTAVFSNGMQPAERKND---NNQP--IFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIR 770

Query:   765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 824
             VEVV    Q L  +  G+  +NMIL+EQE+W ++      F+  L+K       KL LLA
Sbjct:   771 VEVVPRVEQALHYLKIGTTTVNMILIEQEIWNREADD---FIKKLQKDPLFLSPKLILLA 827

Query:   825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
             NS+ SS +     G+  P VI+KPLR+SMLAA+LQR +G+G +   ++   P++ LR+LL
Sbjct:   828 NSVESSISEALCTGIDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALILRNLL 887

Query:   885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
             LGRKILIVDDNNVNL+VAA  LK+YGA VVC E G KA  LL PPH+FDACFMDIQMPEM
Sbjct:   888 LGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDIQMPEM 947

Query:   945 DGYE 948
             DG+E
Sbjct:   948 DGFE 951

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0004673 "protein histidine kinase activity" evidence=IEA;ISS;IDA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA;RCA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0009884 "cytokinin receptor activity" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0071329 "cellular response to sucrose stimulus" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=RCA;IMP

GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP

GO:0048831 "regulation of shoot system development" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005034 "osmosensor activity" evidence=IGI

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0034757 "negative regulation of iron ion transport" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP;IDA

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0080117 "secondary growth" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0048509 "regulation of meristem development" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

TAIR\|locus:2177261 HK2 "histidine kinase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059718 WOL "WOODEN LEG" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_4165 CPS_4165 "sensory box histidine kinase/response regulator" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0269204 dhkE "histidine kinase E" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2453 VC_2453 "sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2314 GSU_2314 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_4117 CPS_4117 "sensor histidine kinase/response regulator" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0132 SPO_0132 "sensor histidine kinase/response regulator" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5U1	AHK3_ARATH	2, ., 7, ., 1, 3, ., 3	0.7007	0.9365	0.8976	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.13	0.976
3rd Layer	2.7.13.3	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HK3B	histidine kinase cytokinin receptor (1029 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		993
PRK11107		919	PRK11107, PRK11107, hybrid sensory histidine kinas	1e-92
TIGR02956		968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	5e-62
PRK15347		921	PRK15347, PRK15347, two component system sensor ki	8e-53
COG0642		336	COG0642, BaeS, Signal transduction histidine kinas	4e-47
PRK11466		914	PRK11466, PRK11466, hybrid sensory histidine kinas	8e-47
PRK11091		779	PRK11091, PRK11091, aerobic respiration control se	3e-41
pfam03924		190	pfam03924, CHASE, CHASE domain	4e-40
PRK09959		1197	PRK09959, PRK09959, hybrid sensory histidine kinas	1e-30
smart01079		176	smart01079, CHASE, This domain is found in the ext	3e-28
TIGR02966		333	TIGR02966, phoR_proteo, phosphate regulon sensor k	2e-27
PRK10841		924	PRK10841, PRK10841, hybrid sensory kinase in two-c	1e-26
smart00387		111	smart00387, HATPase_c, Histidine kinase-like ATPas	8e-23
pfam02518		111	pfam02518, HATPase_c, Histidine kinase-, DNA gyras	2e-20
COG2205		890	COG2205, KdpD, Osmosensitive K+ channel histidine	6e-20
COG5002		459	COG5002, VicK, Signal transduction histidine kinas	4e-19
cd00075		103	cd00075, HATPase_c, Histidine kinase-like ATPases;	5e-19
smart00388		66	smart00388, HisKA, His Kinase A (phosphoacceptor)	7e-19
pfam00512		66	pfam00512, HisKA, His Kinase A (phospho-acceptor)	9e-19
COG4251		750	COG4251, COG4251, Bacteriophytochrome (light-regul	1e-17
TIGR01386		457	TIGR01386, cztS_silS_copS, heavy metal sensor kina	1e-17
PRK11360		607	PRK11360, PRK11360, sensory histidine kinase AtoS;	9e-16
PRK09835		482	PRK09835, PRK09835, sensor kinase CusS; Provisiona	1e-15
cd00082		65	cd00082, HisKA, Histidine Kinase A (dimerization/p	2e-15
PRK11006		430	PRK11006, phoR, phosphate regulon sensor protein;	1e-13
PRK10841		924	PRK10841, PRK10841, hybrid sensory kinase in two-c	3e-13
cd00156		113	cd00156, REC, Signal receiver domain; originally t	3e-13
COG0784		130	COG0784, CheY, FOG: CheY-like receiver [Signal tra	8e-13
PRK10549		466	PRK10549, PRK10549, signal transduction histidine-	2e-12
PRK10604		433	PRK10604, PRK10604, sensor protein RstB; Provision	4e-12
PRK11100		475	PRK11100, PRK11100, sensory histidine kinase CreC;	2e-11
pfam00072		111	pfam00072, Response_reg, Response regulator receiv	5e-11
PRK13837		828	PRK13837, PRK13837, two-component VirA-like sensor	3e-10
smart00448		55	smart00448, REC, cheY-homologous receiver domain	1e-09
COG3852		363	COG3852, NtrB, Signal transduction histidine kinas	2e-09
PRK10364		457	PRK10364, PRK10364, sensor protein ZraS; Provision	5e-09
PRK09303		380	PRK09303, PRK09303, adaptive-response sensory kina	8e-09
COG3437		360	COG3437, COG3437, Response regulator containing a	2e-08
TIGR02956		968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	6e-08
PRK10618		894	PRK10618, PRK10618, phosphotransfer intermediate p	9e-08
PRK09303		380	PRK09303, PRK09303, adaptive-response sensory kina	2e-07
COG2204		464	COG2204, AtoC, Response regulator containing CheY-	3e-07
PRK11073		348	PRK11073, glnL, nitrogen regulation protein NR(II)	7e-07
COG0745		229	COG0745, OmpR, Response regulators consisting of a	3e-06
PRK15347		921	PRK15347, PRK15347, two component system sensor ki	6e-06
PRK09470		461	PRK09470, cpxA, two-component sensor protein; Prov	2e-05
COG3290		537	COG3290, CitA, Signal transduction histidine kinas	3e-05
TIGR02938		494	TIGR02938, nifL_nitrog, nitrogen fixation negative	3e-05
PRK11361		457	PRK11361, PRK11361, acetoacetate metabolism regula	4e-05
TIGR02916		679	TIGR02916, PEP_his_kin, putative PEP-CTERM system	4e-05
PRK10490		895	PRK10490, PRK10490, sensor protein KdpD; Provision	5e-05
PRK09467		435	PRK09467, envZ, osmolarity sensor protein; Provisi	6e-05
TIGR03785		703	TIGR03785, marine_sort_HK, proteobacterial dedicat	7e-05
COG4192		673	COG4192, COG4192, Signal transduction histidine ki	9e-05
PRK11466		914	PRK11466, PRK11466, hybrid sensory histidine kinas	2e-04
PRK11091		779	PRK11091, PRK11091, aerobic respiration control se	2e-04
PRK11086		542	PRK11086, PRK11086, sensory histidine kinase DcuS;	3e-04
COG4191		603	COG4191, COG4191, Signal transduction histidine ki	3e-04
PRK09581		457	PRK09581, pleD, response regulator PleD; Reviewed	5e-04
PRK13557		540	PRK13557, PRK13557, histidine kinase; Provisional	6e-04

>gnl\|CDD\|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

 Score =  314 bits (807), Expect = 1e-92
 Identities = 169/523 (32%), Positives = 242/523 (46%), Gaps = 82/523 (15%)

Query: 427 KKKA-EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
           KK+A EAA + KS+FLA +SHE+RTP+NGV+G     + T L  TQ+DY++T + S   L
Sbjct: 283 KKRAQEAARI-KSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNL 341

Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
           +++IN++LD +K+E+GKL LE + F+LR  LD+V++L +  + +KG+EL + I   VP+ 
Sbjct: 342 LAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDN 401

Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
           +IGDP R +QIITNL+GN+IKFTE G+I + V L                          
Sbjct: 402 VIGDPLRLQQIITNLVGNAIKFTESGNIDILVEL-------------------------- 435

Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
                                 ++ S   + L V + DTG GI    QS++F  F Q   
Sbjct: 436 ----------------------RALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADA 473

Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
           SISR HGGTG+GL I++ LV  M G+I F S PN GSTF F           N +    +
Sbjct: 474 SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLD-----LNPN--PII 526

Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSK 783
           +  P        G + L V+P    A+        +  +  +EV       LSQ+     
Sbjct: 527 DGLPTDC---LAGKRLLYVEPNSAAAQA----TLDILSETPLEVTYSPT--LSQLPEAHY 577

Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
            I ++ +            T+    L K        L L         A          +
Sbjct: 578 DILLLGLPV----TFREPLTMLHERLAKA-KSMTDFLILALPCHEQVLA-EQLKQDGADA 631

Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
            + KPL  + L  +L          + +   LP      L L   ++ VDDN  NLK+  
Sbjct: 632 CLSKPLSHTRLLPALLE-----PCHHKQPPLLPPTDESRLPL--TVMAVDDNPANLKLIG 684

Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
           A L+     VV  + G +A E       FD   MDIQMP MDG
Sbjct: 685 ALLEEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDG 726

Length = 919

>gnl\|CDD\|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS	Back alignment and domain information

>gnl\|CDD\|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>gnl\|CDD\|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>gnl\|CDD\|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>gnl\|CDD\|217796 pfam03924, CHASE, CHASE domain	Back alignment and domain information

>gnl\|CDD\|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>gnl\|CDD\|215015 smart01079, CHASE, This domain is found in the extracellular portion of receptor-like proteins - such as serine/threonine kinases and adenylyl cyclases	Back alignment and domain information

>gnl\|CDD\|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR	Back alignment and domain information

>gnl\|CDD\|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>gnl\|CDD\|214643 smart00387, HATPase_c, Histidine kinase-like ATPases	Back alignment and domain information

>gnl\|CDD\|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

>gnl\|CDD\|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>gnl\|CDD\|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain	Back alignment and domain information

>gnl\|CDD\|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain	Back alignment and domain information

>gnl\|CDD\|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase	Back alignment and domain information

>gnl\|CDD\|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>gnl\|CDD\|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional	Back alignment and domain information

>gnl\|CDD\|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase	Back alignment and domain information

>gnl\|CDD\|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Back alignment and domain information

>gnl\|CDD\|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>gnl\|CDD\|236724 PRK10604, PRK10604, sensor protein RstB; Provisional	Back alignment and domain information

>gnl\|CDD\|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	Back alignment and domain information

>gnl\|CDD\|200976 pfam00072, Response_reg, Response regulator receiver domain	Back alignment and domain information

>gnl\|CDD\|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|214668 smart00448, REC, cheY-homologous receiver domain	Back alignment and domain information

>gnl\|CDD\|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional	Back alignment and domain information

>gnl\|CDD\|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated	Back alignment and domain information

>gnl\|CDD\|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS	Back alignment and domain information

>gnl\|CDD\|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>gnl\|CDD\|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated	Back alignment and domain information

>gnl\|CDD\|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>gnl\|CDD\|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>gnl\|CDD\|236532 PRK09470, cpxA, two-component sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL	Back alignment and domain information

>gnl\|CDD\|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>gnl\|CDD\|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase	Back alignment and domain information

>gnl\|CDD\|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional	Back alignment and domain information

>gnl\|CDD\|236531 PRK09467, envZ, osmolarity sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>gnl\|CDD\|226655 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>gnl\|CDD\|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>gnl\|CDD\|236839 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>gnl\|CDD\|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236577 PRK09581, pleD, response regulator PleD; Reviewed	Back alignment and domain information

>gnl\|CDD\|237425 PRK13557, PRK13557, histidine kinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		993
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	100.0
PRK10841		924	hybrid sensory kinase in two-component regulatory	100.0
PRK15347		921	two component system sensor kinase SsrA; Provision	100.0
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	100.0
PRK11091		779	aerobic respiration control sensor protein ArcB; P	100.0
KOG0519		786	consensus Sensory transduction histidine kinase [S	100.0
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	100.0
PRK10618		894	phosphotransfer intermediate protein in two-compon	100.0
PRK09959		1197	hybrid sensory histidine kinase in two-component r	100.0
PRK13837		828	two-component VirA-like sensor kinase; Provisional	100.0
COG5002		459	VicK Signal transduction histidine kinase [Signal	100.0
PRK09303		380	adaptive-response sensory kinase; Validated	100.0
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	100.0
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	100.0
PRK13557		540	histidine kinase; Provisional	100.0
PRK10604		433	sensor protein RstB; Provisional	100.0
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	99.97
PRK10815		485	sensor protein PhoQ; Provisional	99.97
PRK10549		466	signal transduction histidine-protein kinase BaeS;	99.97
PRK10490		895	sensor protein KdpD; Provisional	99.97
PRK10364		457	sensor protein ZraS; Provisional	99.97
PRK10755		356	sensor protein BasS/PmrB; Provisional	99.97
PRK09835		482	sensor kinase CusS; Provisional	99.97
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	99.97
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	99.97
COG4191		603	Signal transduction histidine kinase regulating C4	99.97
PRK09470		461	cpxA two-component sensor protein; Provisional	99.96
COG3852		363	NtrB Signal transduction histidine kinase, nitroge	99.96
COG4251		750	Bacteriophytochrome (light-regulated signal transd	99.96
PRK09467		435	envZ osmolarity sensor protein; Provisional	99.96
PRK10337		449	sensor protein QseC; Provisional	99.96
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	99.96
PRK11100		475	sensory histidine kinase CreC; Provisional	99.95
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	99.95
COG0642		336	BaeS Signal transduction histidine kinase [Signal	99.94
PRK11360		607	sensory histidine kinase AtoS; Provisional	99.94
PF03924		193	CHASE: CHASE domain; InterPro: IPR006189 The CHASE	99.93
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	99.92
PRK13560		807	hypothetical protein; Provisional	99.92
PRK11086		542	sensory histidine kinase DcuS; Provisional	99.89
PRK11644		495	sensory histidine kinase UhpB; Provisional	99.88
COG5000		712	NtrY Signal transduction histidine kinase involved	99.88
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	99.87
COG3614		348	Predicted periplasmic ligand-binding sensor domain	99.87
COG4192		673	Signal transduction histidine kinase regulating ph	99.85
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	99.8
PRK13559		361	hypothetical protein; Provisional	99.79
PRK10935		565	nitrate/nitrite sensor protein NarQ; Provisional	99.74
COG3290		537	CitA Signal transduction histidine kinase regulati	99.73
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	99.69
KOG0519		786	consensus Sensory transduction histidine kinase [S	99.62
PRK10547		670	chemotaxis protein CheA; Provisional	99.6
PRK04184		535	DNA topoisomerase VI subunit B; Validated	99.51
PRK09581		457	pleD response regulator PleD; Reviewed	99.42
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	99.4
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	99.23
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	99.22
PF00512		68	HisKA: His Kinase A (phospho-acceptor) domain; Int	99.21
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	99.18
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	99.18
COG0745		229	OmpR Response regulators consisting of a CheY-like	99.17
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	99.13
COG3452		297	Predicted periplasmic ligand-binding sensor domain	99.1
COG3706		435	PleD Response regulator containing a CheY-like rec	99.09
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	99.07
COG0784		130	CheY FOG: CheY-like receiver [Signal transduction	99.05
PRK03660		146	anti-sigma F factor; Provisional	99.04
COG3851		497	UhpB Signal transduction histidine kinase, glucose	98.99
COG4585		365	Signal transduction histidine kinase [Signal trans	98.98
COG3920		221	Signal transduction histidine kinase [Signal trans	98.92
COG4753		475	Response regulator containing CheY-like receiver d	98.89
PF00072		112	Response_reg: Response regulator receiver domain;	98.83
COG2972		456	Predicted signal transduction protein with a C-ter	98.82
COG2204		464	AtoC Response regulator containing CheY-like recei	98.81
COG3850		574	NarQ Signal transduction histidine kinase, nitrate	98.78
COG3437		360	Response regulator containing a CheY-like receiver	98.78
PRK04069		161	serine-protein kinase RsbW; Provisional	98.73
COG2201		350	CheB Chemotaxis response regulator containing a Ch	98.64
PLN03029		222	type-a response regulator protein; Provisional	98.63
COG2197		211	CitB Response regulator containing a CheY-like rec	98.61
PRK11091		779	aerobic respiration control sensor protein ArcB; P	98.61
COG3275		557	LytS Putative regulator of cell autolysis [Signal	98.56
PRK11173		237	two-component response regulator; Provisional	98.52
PRK10529		225	DNA-binding transcriptional activator KdpE; Provis	98.52
PRK13856		241	two-component response regulator VirG; Provisional	98.48
PRK12555		337	chemotaxis-specific methylesterase; Provisional	98.46
PRK10701		240	DNA-binding transcriptional regulator RstA; Provis	98.46
PRK15029		755	arginine decarboxylase; Provisional	98.46
COG4564		459	Signal transduction histidine kinase [Signal trans	98.45
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	98.45
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	98.45
PRK10046		225	dpiA two-component response regulator DpiA; Provis	98.44
PRK10766		221	DNA-binding transcriptional regulator TorR; Provis	98.44
PRK10955		232	DNA-binding transcriptional regulator CpxR; Provis	98.41
COG3947		361	Response regulator containing CheY-like receiver a	98.4
PRK10816		223	DNA-binding transcriptional regulator PhoP; Provis	98.39
PRK09468		239	ompR osmolarity response regulator; Provisional	98.37
smart00388		66	HisKA His Kinase A (phosphoacceptor) domain. Dimer	98.36
COG4565		224	CitB Response regulator of citrate/malate metaboli	98.35
PRK11517		223	transcriptional regulatory protein YedW; Provision	98.35
TIGR02154		226	PhoB phosphate regulon transcriptional regulatory	98.34
PRK09836		227	DNA-binding transcriptional activator CusR; Provis	98.34
PRK14084		246	two-component response regulator; Provisional	98.34
PRK00742		354	chemotaxis-specific methylesterase; Provisional	98.32
PRK10161		229	transcriptional regulator PhoB; Provisional	98.32
PRK10643		222	DNA-binding transcriptional regulator BasR; Provis	98.31
PF14501		100	HATPase_c_5: GHKL domain	98.27
TIGR02875		262	spore_0_A sporulation transcription factor Spo0A.	98.26
PRK10336		219	DNA-binding transcriptional regulator QseB; Provis	98.25
TIGR03787		227	marine_sort_RR proteobacterial dedicated sortase s	98.24
PRK10430		239	DNA-binding transcriptional activator DcuR; Provis	98.21
PRK11083		228	DNA-binding response regulator CreB; Provisional	98.2
PRK11697		238	putative two-component response-regulatory protein	98.2
CHL00148		240	orf27 Ycf27; Reviewed	98.19
PRK10710		240	DNA-binding transcriptional regulator BaeR; Provis	98.18
PRK10923		469	glnG nitrogen regulation protein NR(I); Provisiona	98.16
PRK15115		444	response regulator GlrR; Provisional	98.16
COG0745		229	OmpR Response regulators consisting of a CheY-like	98.14
TIGR01387		218	cztR_silR_copR heavy metal response regulator. Mem	98.14
PRK11361		457	acetoacetate metabolism regulatory protein AtoC; P	98.13
PRK10365		441	transcriptional regulatory protein ZraR; Provision	98.11
PRK09958		204	DNA-binding transcriptional activator EvgA; Provis	98.1
PRK09390		202	fixJ response regulator FixJ; Provisional	98.09
PF00072		112	Response_reg: Response regulator receiver domain;	98.06
PRK13558		665	bacterio-opsin activator; Provisional	98.05
TIGR01818		463	ntrC nitrogen regulation protein NR(I). This model	98.05
PRK15411		207	rcsA colanic acid capsular biosynthesis activation	98.05
COG4566		202	TtrR Response regulator [Signal transduction mecha	98.03
PRK09483		217	response regulator; Provisional	98.02
PRK10840		216	transcriptional regulator RcsB; Provisional	98.01
PRK13435		145	response regulator; Provisional	97.98
PRK09191		261	two-component response regulator; Provisional	97.98
PRK09935		210	transcriptional regulator FimZ; Provisional	97.96
PRK10100		216	DNA-binding transcriptional regulator CsgD; Provis	97.95
PRK10360		196	DNA-binding transcriptional activator UhpA; Provis	97.94
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	97.94
PRK15479		221	transcriptional regulatory protein TctD; Provision	97.9
cd00082		65	HisKA Histidine Kinase A (dimerization/phosphoacce	97.9
TIGR02915		445	PEP_resp_reg putative PEP-CTERM system response re	97.89
COG2204		464	AtoC Response regulator containing CheY-like recei	97.88
COG4567		182	Response regulator consisting of a CheY-like recei	97.85
PRK09581		457	pleD response regulator PleD; Reviewed	97.81
PRK10610		129	chemotaxis regulatory protein CheY; Provisional	97.68
PRK15347		921	two component system sensor kinase SsrA; Provision	97.67
PRK10403		215	transcriptional regulator NarP; Provisional	97.62
PRK13557		540	histidine kinase; Provisional	97.58
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	97.57
PRK15369		211	two component system sensor kinase SsrB; Provision	97.57
COG0784		130	CheY FOG: CheY-like receiver [Signal transduction	97.56
PRK10651		216	transcriptional regulator NarL; Provisional	97.55
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	97.54
PLN03029		222	type-a response regulator protein; Provisional	97.48
PRK10841		924	hybrid sensory kinase in two-component regulatory	97.48
cd00156		113	REC Signal receiver domain; originally thought to	97.42
PRK13837		828	two-component VirA-like sensor kinase; Provisional	97.41
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	97.41
COG3279		244	LytT Response regulator of the LytR/AlgR family [T	97.4
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	97.31
COG3437		360	Response regulator containing a CheY-like receiver	97.27
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	97.26
PRK11475		207	DNA-binding transcriptional activator BglJ; Provis	97.23
COG4566		202	TtrR Response regulator [Signal transduction mecha	97.1
PRK12555		337	chemotaxis-specific methylesterase; Provisional	96.98
COG3706		435	PleD Response regulator containing a CheY-like rec	96.97
TIGR02154		226	PhoB phosphate regulon transcriptional regulatory	96.94
PRK00742		354	chemotaxis-specific methylesterase; Provisional	96.87
COG3707		194	AmiR Response regulator with putative antiterminat	96.86
PRK10161		229	transcriptional regulator PhoB; Provisional	96.86
COG4753		475	Response regulator containing CheY-like receiver d	96.85
PRK10955		232	DNA-binding transcriptional regulator CpxR; Provis	96.85
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	96.84
TIGR01818		463	ntrC nitrogen regulation protein NR(I). This model	96.84
COG4565		224	CitB Response regulator of citrate/malate metaboli	96.79
PRK09468		239	ompR osmolarity response regulator; Provisional	96.77
PRK11173		237	two-component response regulator; Provisional	96.73
smart00448		55	REC cheY-homologous receiver domain. CheY regulate	96.7
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	96.66
TIGR02875		262	spore_0_A sporulation transcription factor Spo0A.	96.65
PRK10643		222	DNA-binding transcriptional regulator BasR; Provis	96.64
PRK10430		239	DNA-binding transcriptional activator DcuR; Provis	96.61
PRK09836		227	DNA-binding transcriptional activator CusR; Provis	96.6
PRK10816		223	DNA-binding transcriptional regulator PhoP; Provis	96.58
PRK10766		221	DNA-binding transcriptional regulator TorR; Provis	96.55
PRK10336		219	DNA-binding transcriptional regulator QseB; Provis	96.54
PRK10529		225	DNA-binding transcriptional activator KdpE; Provis	96.52
PRK10046		225	dpiA two-component response regulator DpiA; Provis	96.52
PRK10701		240	DNA-binding transcriptional regulator RstA; Provis	96.46
PRK13856		241	two-component response regulator VirG; Provisional	96.44
PRK11517		223	transcriptional regulatory protein YedW; Provision	96.39
PRK11083		228	DNA-binding response regulator CreB; Provisional	96.37
TIGR03787		227	marine_sort_RR proteobacterial dedicated sortase s	96.36
PRK10840		216	transcriptional regulator RcsB; Provisional	96.33
CHL00148		240	orf27 Ycf27; Reviewed	96.31
PRK10693		303	response regulator of RpoS; Provisional	96.31
PRK15115		444	response regulator GlrR; Provisional	96.21
PRK09959		1197	hybrid sensory histidine kinase in two-component r	96.21
PRK10618		894	phosphotransfer intermediate protein in two-compon	96.19
PRK10365		441	transcriptional regulatory protein ZraR; Provision	96.16
PRK10923		469	glnG nitrogen regulation protein NR(I); Provisiona	96.15
PRK09958		204	DNA-binding transcriptional activator EvgA; Provis	96.12
COG4567		182	Response regulator consisting of a CheY-like recei	96.0
PRK14084		246	two-component response regulator; Provisional	96.0
COG3947		361	Response regulator containing CheY-like receiver a	95.99
PRK13435		145	response regulator; Provisional	95.82
COG2197		211	CitB Response regulator containing a CheY-like rec	95.8
PRK10610		129	chemotaxis regulatory protein CheY; Provisional	95.67
PRK09483		217	response regulator; Provisional	95.67
PRK11361		457	acetoacetate metabolism regulatory protein AtoC; P	95.64
TIGR01387		218	cztR_silR_copR heavy metal response regulator. Mem	95.61
PRK09191		261	two-component response regulator; Provisional	95.54
PRK10710		240	DNA-binding transcriptional regulator BaeR; Provis	95.4
PRK15479		221	transcriptional regulatory protein TctD; Provision	95.39
PRK11697		238	putative two-component response-regulatory protein	95.36
TIGR02915		445	PEP_resp_reg putative PEP-CTERM system response re	95.31
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	95.3
PRK10360		196	DNA-binding transcriptional activator UhpA; Provis	94.95
PRK09390		202	fixJ response regulator FixJ; Provisional	94.89
PRK09935		210	transcriptional regulator FimZ; Provisional	94.62
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	94.03
cd00156		113	REC Signal receiver domain; originally thought to	93.66
PRK14083		601	HSP90 family protein; Provisional	93.28
PRK10100		216	DNA-binding transcriptional regulator CsgD; Provis	92.96
PRK10651		216	transcriptional regulator NarL; Provisional	92.89
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	92.74
PRK15369		211	two component system sensor kinase SsrB; Provision	92.55
PRK15411		207	rcsA colanic acid capsular biosynthesis activation	92.48
PRK13558		665	bacterio-opsin activator; Provisional	92.37
COG3707		194	AmiR Response regulator with putative antiterminat	92.37
PRK10403		215	transcriptional regulator NarP; Provisional	92.35
PRK15029		755	arginine decarboxylase; Provisional	92.3
PRK05644		638	gyrB DNA gyrase subunit B; Validated	92.11
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	92.01
PRK05218		613	heat shock protein 90; Provisional	90.78
PTZ00272		701	heat shock protein 83 kDa (Hsp83); Provisional	90.37
COG2201		350	CheB Chemotaxis response regulator containing a Ch	89.62
PTZ00130		814	heat shock protein 90; Provisional	89.03
PF06490		109	FleQ: Flagellar regulatory protein FleQ; InterPro:	87.03
smart00448		55	REC cheY-homologous receiver domain. CheY regulate	86.91
PF06490		109	FleQ: Flagellar regulatory protein FleQ; InterPro:	86.54
smart00433		594	TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras	86.03
COG5381		184	Uncharacterized protein conserved in bacteria [Fun	85.47
PRK11475		207	DNA-binding transcriptional activator BglJ; Provis	84.64
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	83.93

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.7e-54  Score=548.36  Aligned_cols=468  Identities=34%  Similarity=0.480  Sum_probs=378.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001941          422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG  501 (993)
Q Consensus       422 ~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg  501 (993)
                      ++...+++++++++.|++|++++||||||||++|+|+++++.....++.+++|++.+..++++|..+|++++++++++++
T Consensus       278 ~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~  357 (919)
T PRK11107        278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAG  357 (919)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44455677788888999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             CcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEee
Q 001941          502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE  581 (993)
Q Consensus       502 ~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e  581 (993)
                      +..++..++++.+++++++..+...+..+++.+.+++++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+....
T Consensus       358 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~  437 (919)
T PRK11107        358 KLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRA  437 (919)
T ss_pred             CcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEe
Confidence            99999999999999999999999999999999999998888878899999999999999999999999998887765322


Q ss_pred             cccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 001941          582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM  661 (993)
Q Consensus       582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~  661 (993)
                      .                                                ..+...+.|+|.|+|+|||++.++++|+||+
T Consensus       438 ~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~  469 (919)
T PRK11107        438 L------------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFR  469 (919)
T ss_pred             c------------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhc
Confidence            1                                                1122357899999999999999999999999


Q ss_pred             ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceE
Q 001941          662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKA  741 (993)
Q Consensus       662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rv  741 (993)
                      +.+.+.+++.+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........          .......+.|.++
T Consensus       470 ~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~i  539 (919)
T PRK11107        470 QADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRL  539 (919)
T ss_pred             cCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeE
Confidence            999888888899999999999999999999999999999999999999965332110          1112345779999


Q ss_pred             EEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEE
Q 001941          742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF  821 (993)
Q Consensus       742 Lvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  821 (993)
                      +++||++..+..+..+|+.+|+.+..+.+..+ +     ....+|++++|..++......  .....++..... .+.++
T Consensus       540 li~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~i  610 (919)
T PRK11107        540 LYVEPNSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPLT--MLHERLAKAKSM-TDFLI  610 (919)
T ss_pred             EEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCHH--HHHHHHHhhhhc-CCcEE
Confidence            99999999999999999999999999998877 2     235689999998776433222  222222222211 22333


Q ss_pred             EEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCChHHHHH
Q 001941          822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV  901 (993)
Q Consensus       822 lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~v  901 (993)
                      ++..+......... ...|...++.||+....+...+.............       .......+.+|||||||+.++..
T Consensus       611 ~~~~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~vLivdd~~~~~~~  682 (919)
T PRK11107        611 LALPCHEQVLAEQL-KQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLP-------PTDESRLPLTVMAVDDNPANLKL  682 (919)
T ss_pred             EEeCCcchhhHHHH-hhCCCceEECCCCCHHHHHHHHHHhhccccccccc-------ccccccCCCeEEEEeCCHHHHHH
Confidence            33332222222222 23367789999999999988887654211110000       00111234689999999999999


Q ss_pred             HHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEEEc
Q 001941          902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILVWK  965 (993)
Q Consensus       902 l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~~~  965 (993)
                      +..+|+..|+.+..+.+|.+|++.+. .+.||+||||+.||+|||+++++.||+.   ..+|||+.+
T Consensus       683 l~~~L~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt  748 (919)
T PRK11107        683 IGALLEEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVT  748 (919)
T ss_pred             HHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEe
Confidence            99999999999999999999999995 5789999999999999999999999974   468888774

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	Back alignment and domain information

>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>PRK09581 pleD response regulator PleD; Reviewed	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	Back alignment and domain information

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	Back alignment and domain information

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	Back alignment and domain information

>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>PLN03029 type-a response regulator protein; Provisional	Back alignment and domain information

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]	Back alignment and domain information

>PRK11173 two-component response regulator; Provisional	Back alignment and domain information

>PRK10529 DNA-binding transcriptional activator KdpE; Provisional	Back alignment and domain information

>PRK13856 two-component response regulator VirG; Provisional	Back alignment and domain information

>PRK12555 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>PRK10701 DNA-binding transcriptional regulator RstA; Provisional	Back alignment and domain information

>PRK15029 arginine decarboxylase; Provisional	Back alignment and domain information

>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>PRK10046 dpiA two-component response regulator DpiA; Provisional	Back alignment and domain information

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional	Back alignment and domain information

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional	Back alignment and domain information

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	Back alignment and domain information

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional	Back alignment and domain information

>PRK09468 ompR osmolarity response regulator; Provisional	Back alignment and domain information

>smart00388 HisKA His Kinase A (phosphoacceptor) domain	Back alignment and domain information

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK11517 transcriptional regulatory protein YedW; Provisional	Back alignment and domain information

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB	Back alignment and domain information

>PRK09836 DNA-binding transcriptional activator CusR; Provisional	Back alignment and domain information

>PRK14084 two-component response regulator; Provisional	Back alignment and domain information

>PRK00742 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>PRK10161 transcriptional regulator PhoB; Provisional	Back alignment and domain information

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional	Back alignment and domain information

>PF14501 HATPase_c_5: GHKL domain	Back alignment and domain information

>TIGR02875 spore_0_A sporulation transcription factor Spo0A	Back alignment and domain information

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional	Back alignment and domain information

>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator	Back alignment and domain information

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional	Back alignment and domain information

>PRK11083 DNA-binding response regulator CreB; Provisional	Back alignment and domain information

>PRK11697 putative two-component response-regulatory protein YehT; Provisional	Back alignment and domain information

>CHL00148 orf27 Ycf27; Reviewed	Back alignment and domain information

>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional	Back alignment and domain information

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional	Back alignment and domain information

>PRK15115 response regulator GlrR; Provisional	Back alignment and domain information

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>TIGR01387 cztR_silR_copR heavy metal response regulator	Back alignment and domain information

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>PRK10365 transcriptional regulatory protein ZraR; Provisional	Back alignment and domain information

>PRK09958 DNA-binding transcriptional activator EvgA; Provisional	Back alignment and domain information

>PRK09390 fixJ response regulator FixJ; Provisional	Back alignment and domain information

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>PRK13558 bacterio-opsin activator; Provisional	Back alignment and domain information

>TIGR01818 ntrC nitrogen regulation protein NR(I)	Back alignment and domain information

>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional	Back alignment and domain information

>COG4566 TtrR Response regulator [Signal transduction mechanisms]	Back alignment and domain information

>PRK09483 response regulator; Provisional	Back alignment and domain information

>PRK10840 transcriptional regulator RcsB; Provisional	Back alignment and domain information

>PRK13435 response regulator; Provisional	Back alignment and domain information

>PRK09191 two-component response regulator; Provisional	Back alignment and domain information

>PRK09935 transcriptional regulator FimZ; Provisional	Back alignment and domain information

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional	Back alignment and domain information

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>PRK15479 transcriptional regulatory protein TctD; Provisional	Back alignment and domain information

>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase	Back alignment and domain information

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator	Back alignment and domain information

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK09581 pleD response regulator PleD; Reviewed	Back alignment and domain information

>PRK10610 chemotaxis regulatory protein CheY; Provisional	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>PRK10403 transcriptional regulator NarP; Provisional	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>PRK15369 two component system sensor kinase SsrB; Provisional	Back alignment and domain information

>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]	Back alignment and domain information

>PRK10651 transcriptional regulator NarL; Provisional	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>PLN03029 type-a response regulator protein; Provisional	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional	Back alignment and domain information

>COG4566 TtrR Response regulator [Signal transduction mechanisms]	Back alignment and domain information

>PRK12555 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB	Back alignment and domain information

>PRK00742 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK10161 transcriptional regulator PhoB; Provisional	Back alignment and domain information

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>TIGR01818 ntrC nitrogen regulation protein NR(I)	Back alignment and domain information

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK09468 ompR osmolarity response regulator; Provisional	Back alignment and domain information

>PRK11173 two-component response regulator; Provisional	Back alignment and domain information

>smart00448 REC cheY-homologous receiver domain	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>TIGR02875 spore_0_A sporulation transcription factor Spo0A	Back alignment and domain information

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional	Back alignment and domain information

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional	Back alignment and domain information

>PRK09836 DNA-binding transcriptional activator CusR; Provisional	Back alignment and domain information

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional	Back alignment and domain information

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional	Back alignment and domain information

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional	Back alignment and domain information

>PRK10529 DNA-binding transcriptional activator KdpE; Provisional	Back alignment and domain information

>PRK10046 dpiA two-component response regulator DpiA; Provisional	Back alignment and domain information

>PRK10701 DNA-binding transcriptional regulator RstA; Provisional	Back alignment and domain information

>PRK13856 two-component response regulator VirG; Provisional	Back alignment and domain information

>PRK11517 transcriptional regulatory protein YedW; Provisional	Back alignment and domain information

>PRK11083 DNA-binding response regulator CreB; Provisional	Back alignment and domain information

>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator	Back alignment and domain information

>PRK10840 transcriptional regulator RcsB; Provisional	Back alignment and domain information

>CHL00148 orf27 Ycf27; Reviewed	Back alignment and domain information

>PRK10693 response regulator of RpoS; Provisional	Back alignment and domain information

>PRK15115 response regulator GlrR; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>PRK10365 transcriptional regulatory protein ZraR; Provisional	Back alignment and domain information

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional	Back alignment and domain information

>PRK09958 DNA-binding transcriptional activator EvgA; Provisional	Back alignment and domain information

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK14084 two-component response regulator; Provisional	Back alignment and domain information

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	Back alignment and domain information

>PRK13435 response regulator; Provisional	Back alignment and domain information

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK10610 chemotaxis regulatory protein CheY; Provisional	Back alignment and domain information

>PRK09483 response regulator; Provisional	Back alignment and domain information

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>TIGR01387 cztR_silR_copR heavy metal response regulator	Back alignment and domain information

>PRK09191 two-component response regulator; Provisional	Back alignment and domain information

>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional	Back alignment and domain information

>PRK15479 transcriptional regulatory protein TctD; Provisional	Back alignment and domain information

>PRK11697 putative two-component response-regulatory protein YehT; Provisional	Back alignment and domain information

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional	Back alignment and domain information

>PRK09390 fixJ response regulator FixJ; Provisional	Back alignment and domain information

>PRK09935 transcriptional regulator FimZ; Provisional	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional	Back alignment and domain information

>PRK10651 transcriptional regulator NarL; Provisional	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>PRK15369 two component system sensor kinase SsrB; Provisional	Back alignment and domain information

>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional	Back alignment and domain information

>PRK13558 bacterio-opsin activator; Provisional	Back alignment and domain information

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK10403 transcriptional regulator NarP; Provisional	Back alignment and domain information

>PRK15029 arginine decarboxylase; Provisional	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional	Back alignment and domain information

>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>PTZ00130 heat shock protein 90; Provisional	Back alignment and domain information

>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e	Back alignment and domain information

>smart00448 REC cheY-homologous receiver domain	Back alignment and domain information

>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e	Back alignment and domain information

>smart00433 TOP2c TopoisomeraseII	Back alignment and domain information

>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		993
3t4j_A		270	Arabidopsis Histidine Kinase 4 Sensor Domain In Com		1e-98
4ew8_A		268	Crystal Structure Of A C-Terminal Part Of Tyrosine		6e-13
2c2a_A		258	Structure Of The Entire Cytoplasmic Portion Of A Se		1e-11
3dge_A		258	Structure Of A Histidine Kinase-response Regulator		1e-11
3mm4_A		206	Crystal Structure Of The Receiver Domain Of The His		3e-08
3sl2_A		177	Atp Forms A Stable Complex With The Essential Histi		4e-08
3a0r_A		349	Crystal Structure Of Histidine Kinase Thka (Tm1359)		9e-08
1r62_A		160	Crystal Structure Of The C-terminal Domain Of The T		1e-05
3dge_C		122	Structure Of A Histidine Kinase-response Regulator		1e-04
3d36_A		244	How To Switch Off A Histidine Kinase: Crystal Struc		3e-04
3c97_A		140	Crystal Structure Of The Response Regulator Receive		4e-04

>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex With N- Isopentenyl Adenine Length = 270