Citrus Sinensis ID: 001958

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990-

MMMMNQNQQGSTQNIASSVDPNSVENRYVVDASQSQASSYFPSTTGSGAVSWATHGVNNQSTENGNLSNASYHHEQHTESHVKSLQDGLNATSLTSSSNLGTTNVAQDYSGYTSYPNSSDPYAYGSTAYPGYYSSYQQQPNHSYPQPVGAYQNSGAPYQPISSFQNSGSYVGPASYSATYYNPGDYQTAGGYPSSGYSHQTTSWNEGNYTNYTSHQYSNYTSDTSGAYSSGTAPATSLQYQQQYKQWADYYSQTEVSCAPGTENLSVASSSNQVLQPPGVTAGYPTAHSQPAPIYHQSWQQDSSSSHVSSLQPAATSNGSHDSYWKHGTPSFQNRQVSPVQPHYSKPLEQKTSYNNFQDQHKAACPQGPSSQYAIGQQMAPSYQSPPVQTSPQLDNRRVSKLQIPTNPRIASNLALGLPKTDKDSSTANAAAKPAYIGVSLAKSNEKVVSHADSRVEPGTFPKSLCGYVERALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLFPKPTTEAVTKDLPTSTPLSALSKNKRSPSRRTKSRWEPLPEEKPIDKLASSTNEIVKFSGWIHANEKDRKHISGSVSKEDRLNNIKFHLSEQKSASKSFQRPVKRQRLSADGFKTEDNGDASSDSDKEQSLTSYYSGAIALANSPEERMRRENRSKRFDRGQGNRSETNRFKGKNAGTGNLYVRRASALLISKSFDDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKVHLIQPYYN

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHcccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHHHcccEEEcccccEEEcccccccccccc

cccccccccccccEEccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHcccccccccccccccccccccccccccEEEEccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcccccccEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHcccEEEEccccccEEcEHEEHEEEccc

mmmmnqnqqgstqniassvdpnsvenryvvdasqsqassyfpsttgsgavswathgvnnqstengnlsnasyhheqhtESHVKSLQdglnatsltsssnlgttnvaqdysgytsypnssdpyaygstaypgyyssyqqqpnhsypqpvgayqnsgapyqpissfqnsgsyvgpasysatyynpgdyqtaggypssgyshqttswnegnytnytshqysnytsdtsgayssgtapatsLQYQQQYKQWADYYSqtevscapgtenlsvasssnqvlqppgvtagyptahsqpapiyhqswqqdsssshvsslqpaatsngshdsywkhgtpsfqnrqvspvqphyskpleqktsynnfqdqhkaacpqgpssqyaigqqmapsyqsppvqtspqldnrrvsklqiptnpriasnlalglpktdkdsstanaaakpayIGVSLAKsnekvvshadsrvepgtfpkslCGYVERALARCKGDAEIAASQAVMGEIIKKansdgtlfsrdwdveplfpkptteavtkdlptstplsalsknkrspsrrtksrweplpeekpidklasSTNEIVKFSGwihanekdrkhisgsvskedrlnNIKFHLseqksasksfqrpvkrqrlsadgfktedngdassdsdkeqslTSYYSGAIAlanspeermrrenrskrfdrgqgnrsetnrfkgknagtgnLYVRRASALLISksfddggsravedidwdaltvkGTCQEIEKRYLRltsapdpstvrpEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLaiengdlpeynqCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVScmsrsyrptvpvSYVAQVLgftgvsptneeceerdsdGLEECVEWLKAHGAslvtdangevqLDAKVHLIQPYYN

mmmmnqnqqgstqniassvdPNSVENRYVVDASQSQASSYFPSTTGSGAVSWATHGVNNQSTENGNLSNASYHHEQHTESHVKSLQDGLNATsltsssnlgttnVAQDYSGYTSYPNSSDPYAYGSTAYPGYYSSYQQQPNHSYPQPVGAYQNSGAPYQPISSFQNSGSYVGPASYSATYYNPGDYQTAGGYPSSGYSHQTTSWNEGNYTNYTSHQYSNYTSDTSGAYSSGTAPATSLQYQQQYKQWADYYSQTEVSCAPGTENLSVASSSNQVLQPPGVTAGYPTAHSQPAPIYHQSWQQDSSSSHVSSLQPAATSNGSHDSYWKHGTPSFQNRQVSPVQPHYSKPLEQKTSYNNFQDQHKAACPQGPSSQYAIGQQMAPSYQSPPVQTSPQLDNRRVSKlqiptnpriasnlalglpKTDKDSSTANAAAKPAYIGVSLAKSNEKVVSHadsrvepgtfpksLCGYVERALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLFpkptteavtkdlptstplsalsknkrspsrrtksrweplpeekpidklasstNEIVKFsgwihanekdrkhisgsvskedrlNNIKFHlseqksasksfqrpvkrqrlsadgfktedngdassdsdkeqsLTSYYSGaialanspeermrrenrskrfdrgqgnrsetnrfkgknagtgnlYVRRASALLIsksfddggsrAVEDIDWDALTVKGTCQEIEKRylrltsapdpstvRPEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGftgvsptneECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKVHLIQPYYN

MMMMNQNQQGSTQNIASSVDPNSVENRYVVDASQSQASSYFPSTTGSGAVSWATHGVNNQSTENGNLSNASYHHEQHTESHVKSLQDglnatsltsssnlgttnVAQDYSGYTSYPNSSDPYAYGSTAYPGyyssyqqqPNHSYPQPVGAYQNSGAPYQPISSFQNSGSYVGPASYSATYYNPGDYQTAGGYPSSGYSHQTTSWNEGNYTNYTSHQYSNYTSDTSGAYSSGTAPATSLQYQQQYKQWADYYSQTEVSCAPGTENLSVASSSNQVLQPPGVTAGYPTAHSQPAPIYHqswqqdsssshvsslqPAATSNGSHDSYWKHGTPSFQNRQVSPVQPHYSKPLEQKTSYNNFQDQHKAACPQGPSSQYAIGQQMAPSYQSPPVQTSPQLDNRRVSKLQIPTNPRIASNLALGLPKTDKDSSTANAAAKPAYIGVSLAKSNEKVVSHADSRVEPGTFPKSLCGYVERALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLFPKPTTEAVTKDLPTSTPLSALSKNKRSPSRRTKSRWEPLPEEKPIDKLASSTNEIVKFSGWIHANEKDRKHISGSVSKEDRLNNIKFHLSEQKSASKSFQRPVKRQRLSADGFKTEDNGDASSDSDKEQSLTSYYSGAIALANSPEERMRRENRSKRFDRGQGNRSETNRFKGKNAGTGNLYVRRASALLISKSFDDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKVHLIQPYYN

*************************************************************************************************************************YAYGSTAYPGYY************************************YVGPASYSATYYNPGDYQTAGG***********SWNEGNYTNYTS************************QYQQQYKQWADYYSQTEVSC*********************************************************************************************************************************************************************************YIG*********************TFPKSLCGYVERALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLF******************************************************IVKFSGWIH*******************************************************************************************************************GNLYVRRASALLISKSFDDGGSRAVEDIDWDALTVKGTCQEIEKRYLRL********************MVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSL************AVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVS************GLEECVEWLKAHGASLVTDANGEVQLDAKVHLIQP***

**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GYV***********************************************************************************************************************************************************************************************************************************************************WDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKVHLI*P***

*****************SVDPNSVENRYVVDASQSQASSYFPSTTGSGAVSWATHGVNNQSTENGNLSNA***************QDGLNATSLTSSSNLGTTNVAQDYSGYTSYPNSSDPYAYGSTAYPGYYSSYQQQPNHSYPQPVGAYQNSGAPYQPISSFQNSGSYVGPASYSATYYNPGDYQTAGGYPSSGYSHQTTSWNEGNYTNYTSHQYSNYTSDTSGAYSSGTAPATSLQYQQQYKQWADYYSQTEVSCAPGTENLSVASSSNQVLQPPGVTAGYPTAHSQPAPIY**************************DSYWKHGTPSFQNRQVSPVQPHYSKPLEQKTSYNNFQDQHKAACPQGPSSQYAIGQQ***************LDNRRVSKLQIPTNPRIASNLALGLP**********AAAKPAYIGVSLAKS**********RVEPGTFPKSLCGYVERALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLFPKPTTEAVTKDLPTSTPLS*******************LPEEKPIDKLASSTNEIVKFSGWIHANEKDRKHISGSVSKEDRLNNIKFHLSE**************QRLSADGFK****************LTSYYSGAIALAN***********************ETNRFKGKNAGTGNLYVRRASALLISKSFDDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLS***********ALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSP************LEECVEWLKAHGASLVTDANGEVQLDAKVHLIQPYYN

***************ASSVDPNSVENRYVVDASQSQA****************************NLSNA*******************************TTNVAQDYSGYTSYPNSSDPYAYGSTAYPGYYSSYQQQPNHSYPQPVGAYQNSGAPYQPISSFQNSGSYVGPASYSATYYNPGDYQTAGGYPSSGYSHQTTSWNEGNYTNYTSHQYSNYTSDTSGAYSSGTAPATSLQYQQQYKQWADYYSQTEVSCAP**************LQPPG*TAG**TAHSQPAPIY******************************KHGTPSFQNRQVSPVQP********************************************************************************************************************GTFPKSLCGYVERALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLFPKP*********************************************************************************************************************************************************************************************************DIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKVHLIQPYYN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		991	2.2.26 [Sep-21-2011]
Q32NW2		800	Leukocyte receptor cluste	N/A	no	0.293	0.363	0.404	4e-62
Q96PV6		779	Leukocyte receptor cluste	no	no	0.256	0.326	0.412	8e-55
A4QNR8		839	Leukocyte receptor cluste	yes	no	0.270	0.319	0.404	8e-55
Q1MTP1		395	THP3 homolog C2A9.11c OS=	yes	no	0.302	0.759	0.370	2e-54
Q8CBY3		785	Leukocyte receptor cluste	yes	no	0.258	0.326	0.409	2e-50
Q12049		470	Protein THP3 OS=Saccharom	yes	no	0.358	0.755	0.299	1e-31
O60318		1980	80 kDa MCM3-associated pr	no	no	0.220	0.110	0.248	3e-10
Q9WUU9		1971	80 kDa MCM3-associated pr	no	no	0.220	0.111	0.251	7e-10
A6H687		427	SAC3 domain-containing pr	no	no	0.182	0.423	0.247	4e-05
A6NKF1		404	SAC3 domain-containing pr	no	no	0.112	0.274	0.261	0.0003

>sp\|Q32NW2\|LENG8_XENLA Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis GN=leng8 PE=2 SV=1	Back alignment and function desciption

 Score =  240 bits (612), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 134/331 (40%), Positives = 190/331 (57%), Gaps = 40/331 (12%)

Query: 658 PEERMRRENRSKRFDRGQGNRSETNRFKGKNAGTGNLYVRRASALLISKSFDDGGSRAVE 717
           PE+  ++E R+ RF  G G +                 +R    +L   + D     A +
Sbjct: 501 PEKEFKKEKRAARFQHGHGPKK----------------LRMEPLVLQINNMDPS---AAD 541

Query: 718 DIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKN---YLYKCD 774
           ++DWD + + G  Q+I K YLRLT APDPSTVRP  VL+K+L MV+   KN   Y++ C+
Sbjct: 542 NLDWDEIKIVGNSQDITKHYLRLTCAPDPSTVRPVPVLKKSLTMVKADFKNKQDYVFACE 601

Query: 775 QLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCME 834
           Q+KSIRQDLTVQ IR + T +VYETHAR+A+E GD  E+NQCQ+QLK LYAE + G   E
Sbjct: 602 QMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQAQLKSLYAENLAGNVGE 661

Query: 835 FSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKT 894
           F+AY +L  I  + N  +L + ++ L+ + K D  V HAL++R A +  NY  FF+LY+ 
Sbjct: 662 FTAYRILYYIF-TKNSGDLTTELAHLTKELKADACVAHALSLREAWALSNYHRFFKLYRQ 720

Query: 895 APNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDG 954
           AP ++  L+D + E+ R  A+  M +++RP +PVS+V   L F      NE         
Sbjct: 721 APRMSGYLIDKFAERERKAALKAMIKTFRPLLPVSFVQSELAF-----ANE--------- 766

Query: 955 LEECVEWLKAHGASLVTDANGEVQLDAKVHL 985
            EEC  +L     SLV   N   Q+D K+ L
Sbjct: 767 -EECQSFLAP--LSLVYAGNDASQIDCKLSL 794

Xenopus laevis (taxid: 8355)

>sp\|Q96PV6\|LENG8_HUMAN Leukocyte receptor cluster member 8 OS=Homo sapiens GN=LENG8 PE=2 SV=2	Back alignment and function description

>sp\|A4QNR8\|LENG8_DANRE Leukocyte receptor cluster member 8 homolog OS=Danio rerio GN=leng8 PE=2 SV=1	Back alignment and function description

>sp\|Q1MTP1\|THP3_SCHPO THP3 homolog C2A9.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.11c PE=3 SV=1	Back alignment and function description

>sp\|Q8CBY3\|LENG8_MOUSE Leukocyte receptor cluster member 8 homolog OS=Mus musculus GN=Leng8 PE=1 SV=1	Back alignment and function description

>sp\|Q12049\|THP3_YEAST Protein THP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THP3 PE=1 SV=1	Back alignment and function description

>sp\|O60318\|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2	Back alignment and function description

>sp\|Q9WUU9\|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2	Back alignment and function description

>sp\|A6H687\|SAC31_MOUSE SAC3 domain-containing protein 1 OS=Mus musculus GN=Sac3d1 PE=1 SV=1	Back alignment and function description

>sp\|A6NKF1\|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo sapiens GN=SAC3D1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		991
297736443		952	unnamed protein product [Vitis vinifera]	0.920	0.957	0.686	0.0
255568211		1058	leukocyte receptor cluster (lrc) member,	0.835	0.782	0.695	0.0
356576861		999	PREDICTED: uncharacterized protein LOC10	0.966	0.958	0.632	0.0
449451685		1001	PREDICTED: uncharacterized protein LOC10	0.971	0.962	0.622	0.0
356536516		999	PREDICTED: uncharacterized protein LOC10	0.965	0.957	0.626	0.0
357461645		1016	Leukocyte receptor cluster member-like p	0.940	0.917	0.609	0.0
224098183		964	predicted protein [Populus trichocarpa]	0.933	0.959	0.619	0.0
42569765		1006	SAC3/GANP/Nin1/mts3/eIF-3 p25-family pro	0.967	0.953	0.583	0.0
297823817		1004	SAC3/GANP family protein [Arabidopsis ly	0.967	0.955	0.585	0.0
3402673		989	unknown protein [Arabidopsis thaliana]	0.951	0.953	0.582	0.0

>gi\|297736443\|emb\|CBI25314.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1267 bits (3278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/924 (68%), Positives = 752/924 (81%), Gaps = 12/924 (1%)

Query: 67  LSNASYHHEQHTESHVKSLQDGLNA-TSLTSSSNLGTTNVAQDYSGYTSYPNSSDPYAYG 125
            SN+SYHH Q TE H+++ QDGLNA +S+   S+LG  +V Q Y+GYT+YP+S+DPY+YG
Sbjct: 2   FSNSSYHHVQQTEPHLRNAQDGLNAASSVYPPSSLGAASVPQQYNGYTTYPSSNDPYSYG 61

Query: 126 STAYPGYYSSYQQQPNHSYPQPVGAYQNSGAPYQPISSFQNSGSYVGPASYSATYYNPGD 185
           +T YPGYYS YQQQ NHSY QPVGA QN+GAPYQP+SSFQN+GSY GPASY +TYYNPGD
Sbjct: 62  NTGYPGYYSGYQQQSNHSYSQPVGANQNTGAPYQPLSSFQNTGSYAGPASYPSTYYNPGD 121

Query: 186 YQTAGGYPSSGYSHQTTSWNEGNYTNYTSHQYSNYTSDTSGAYSSGTAPATSLQYQQQYK 245
           YQT+GG+ +SGYS+Q+  W+EGNY NYT HQY+NYT D++GAYSS TA ATSLQYQQ YK
Sbjct: 122 YQTSGGHSTSGYSNQSNLWSEGNYANYT-HQYANYTPDSNGAYSSSTAAATSLQYQQHYK 180

Query: 246 QWADYYSQTEVSCAPGTENLSVASSSNQVLQPPGVTAGYPTAHSQPAPIYHQSWQQDSSS 305
           QWADYYSQTEVSCAPGTEN+SV S+SN     PGVT+GY T+ S P      SW  ++SS
Sbjct: 181 QWADYYSQTEVSCAPGTENMSVTSTSNLACPIPGVTSGYSTSASHPPQPSISSWGSENSS 240

Query: 306 SHVSSLQPAATSNGSHDSYWKHGTPSFQNRQVSPVQPHYSKPLEQKTSYNNFQDQHKAAC 365
           + + S+QP A  + +HD YWKHG PSFQN  VS VQP + K L+ K SY++FQDQ K AC
Sbjct: 241 A-LPSVQPGAAISDTHDGYWKHGAPSFQNHHVSTVQPDFQKHLDTKPSYDSFQDQQKTAC 299

Query: 366 PQGPSSQYAIGQQMAPSYQSPPVQTSPQLDNRRVSKLQIPTNPRIASNLALGLPKTDKDS 425
           PQG + QY    +++ SYQSP +QT   LD RRV+KLQIPTNPRIASNLALGLPK DKDS
Sbjct: 300 PQGSNLQYPTAHKVSHSYQSP-LQTIASLDTRRVNKLQIPTNPRIASNLALGLPKIDKDS 358

Query: 426 STANAAAKPAYIGVSLAKSNEKVVSH--ADSRVEPGTFPKSLCGYVERALARCKGDAEIA 483
           S     AKPAYIGVS+ K ++KV+SH  AD+ ++PG FP SL GYVERALARCKG+ ++A
Sbjct: 359 SATGGTAKPAYIGVSVPKPSDKVLSHDGADAILKPGMFPPSLRGYVERALARCKGEMQMA 418

Query: 484 ASQAVMGEIIKKANSDGTLFSRDWDVEPLFPKPTTEAVTKDLPTSTPLSALSKNKRSPSR 543
           A Q V+ E+I KA +DGTL++RDWD+EPLFP P  +A+  ++ +S  +S L K KRSPSR
Sbjct: 419 ACQTVLKEVITKATADGTLYTRDWDIEPLFPLPDADAINNNIESSISIS-LPKPKRSPSR 477

Query: 544 RTKSRWEPLPEEKPIDKLASSTNEIVKFSGWIHANEK---DRKHISGSVS-KEDRLNNIK 599
           R+KSRWEP+ +EK I+K AS  +E VK+ GW+  NE+   D+K  SG    KED L++ K
Sbjct: 478 RSKSRWEPVADEKLIEKPASINHETVKYGGWVSFNERTERDKKFPSGKPDIKEDGLSSTK 537

Query: 600 FHLSEQKSASKSFQRPVKRQRLSADGFKTEDNGDASSDSDKEQSLTSYYSGAIALANSPE 659
           F L EQ++ASKS QRPVKRQR   D   + +NGDASSDSDKEQSLT+YYS AI LANSPE
Sbjct: 538 FPLIEQRTASKSAQRPVKRQRF-GDVLNSAENGDASSDSDKEQSLTAYYSSAITLANSPE 596

Query: 660 ERMRRENRSKRFDRGQGNRSETNRFKGKNAGTGNLYVRRASALLISKSFDDGGSRAVEDI 719
           ER RRENRSKRF++G G+R+ETN F+ KN G G+LY RRASAL++SK+F++GGSRAVEDI
Sbjct: 597 ERKRRENRSKRFEKGHGHRAETNHFRPKNFGAGSLYTRRASALVLSKNFEEGGSRAVEDI 656

Query: 720 DWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKNYLYKCDQLKSI 779
           DWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKAL MVQNS KNYLYKCDQLKSI
Sbjct: 657 DWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALLMVQNSHKNYLYKCDQLKSI 716

Query: 780 RQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYH 839
           RQDLTVQRI N+LT KVYETHARLAIE GDLPEYNQCQSQLK LYAEGIEGC MEF+AY+
Sbjct: 717 RQDLTVQRIHNELTVKVYETHARLAIEVGDLPEYNQCQSQLKTLYAEGIEGCDMEFAAYN 776

Query: 840 LLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLN 899
           LLC ILHS+N R+LLS MSRLSD+A++D+ VKHALAVRAAV+SGNY++FFRLYKTAPNLN
Sbjct: 777 LLCAILHSSNNRDLLSSMSRLSDEARKDEVVKHALAVRAAVTSGNYVLFFRLYKTAPNLN 836

Query: 900 TCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECV 959
           TCLMDL VEKMR++AV CMSRSYRPTVPVSY+AQVLGFT  SP +E  + ++ D  EECV
Sbjct: 837 TCLMDLCVEKMRYEAVRCMSRSYRPTVPVSYIAQVLGFTSASPASEGSDLKEVDKSEECV 896

Query: 960 EWLKAHGASLVTDANGEVQLDAKV 983
           EWLKAHGA L+TD  GE+QLDAK 
Sbjct: 897 EWLKAHGACLITDNTGEMQLDAKA 920

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255568211\|ref\|XP_002525081.1\| leukocyte receptor cluster (lrc) member, putative [Ricinus communis] gi\|223535662\|gb\|EEF37328.1\| leukocyte receptor cluster (lrc) member, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356576861\|ref\|XP_003556548.1\| PREDICTED: uncharacterized protein LOC100804185 [Glycine max]	Back alignment and taxonomy information

>gi\|449451685\|ref\|XP_004143592.1\| PREDICTED: uncharacterized protein LOC101219647 [Cucumis sativus] gi\|449507553\|ref\|XP_004163064.1\| PREDICTED: uncharacterized LOC101219647 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356536516\|ref\|XP_003536783.1\| PREDICTED: uncharacterized protein LOC100778996 [Glycine max]	Back alignment and taxonomy information

>gi\|357461645\|ref\|XP_003601104.1\| Leukocyte receptor cluster member-like protein [Medicago truncatula] gi\|355490152\|gb\|AES71355.1\| Leukocyte receptor cluster member-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224098183\|ref\|XP_002311131.1\| predicted protein [Populus trichocarpa] gi\|222850951\|gb\|EEE88498.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|42569765\|ref\|NP_181466.2\| SAC3/GANP/Nin1/mts3/eIF-3 p25-family protein [Arabidopsis thaliana] gi\|330254569\|gb\|AEC09663.1\| SAC3/GANP/Nin1/mts3/eIF-3 p25-family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297823817\|ref\|XP_002879791.1\| SAC3/GANP family protein [Arabidopsis lyrata subsp. lyrata] gi\|297325630\|gb\|EFH56050.1\| SAC3/GANP family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|3402673\|gb\|AAC28976.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		991
TAIR\|locus:2056058		1006	SAC3A "AT2G39340" [Arabidopsis	0.966	0.952	0.568	3.6e-286
ZFIN\|ZDB-GENE-070410-6		839	zgc:158262 "zgc:158262" [Danio	0.517	0.611	0.313	9.9e-61
UNIPROTKB\|Q96PV6		779	LENG8 "Leukocyte receptor clus	0.589	0.749	0.298	1.5e-58
POMBASE\|SPBC2A9.11c		395	SPBC2A9.11c "nuclear export fa	0.210	0.529	0.502	2.7e-55
MGI\|MGI:2142195		785	Leng8 "leukocyte receptor clus	0.205	0.259	0.5	5.5e-53
SGD\|S000006249		470	THP3 "Protein that may have a	0.357	0.753	0.308	2.7e-32
DICTYBASE\|DDB_G0277813		774	DDB_G0277813 "SAC3/GANP family	0.298	0.382	0.314	4.6e-31
CGD\|CAL0000561		710	orf19.6271 [Candida albicans (	0.221	0.309	0.348	3.7e-22
UNIPROTKB\|Q5AAX8		710	CaO19.6271 "Putative uncharact	0.221	0.309	0.348	3.7e-22
FB\|FBgn0038642		950	Muc91C "Mucin 91C" [Drosophila	0.364	0.38	0.25	1e-07

TAIR\|locus:2056058 SAC3A "AT2G39340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2749 (972.8 bits), Expect = 3.6e-286, P = 3.6e-286
 Identities = 564/992 (56%), Positives = 687/992 (69%)

Query:     7 NQQGSTQNIASSVDPNSVENRYVVDASQSQASSYFPSTTGSGAVSWATHGVNNQSTENGN 66
             N  G+TQ +A  +DPNS+ENRY VD SQ+Q  SY  ST GS +  W  H V NQ+ ENGN
Sbjct:     2 NHGGNTQAVAP-MDPNSIENRYGVDGSQTQKYSYQYST-GSESAPWTGHSVENQAVENGN 59

Query:    67 LSNASYHHEQHTESHVKSLQDXXXXXXXXXXXXXXXXXVAQDYSGYTSYPNSSDPYAYGS 126
              SN++Y+H Q T     ++Q+                 VAQDYSGYT Y  SSDP+ Y +
Sbjct:    60 YSNSNYYHPQPTGPATGNVQEIPNTVSFTISSTSGTANVAQDYSGYTPYQTSSDPHNYSN 119

Query:   127 TAYPGXXXXXXXXPNHSYPQPVGAYQNSGAPYQPISSFQNSGSYVGPASYSATYYNPGDY 186
             T Y          P+ SYPQPVGAYQN+GAP QP+SSFQN GSY G  SYS TYYNP DY
Sbjct:   120 TGYSNYYSGYQQQPSQSYPQPVGAYQNTGAP-QPLSSFQNPGSYAGTPSYSGTYYNPADY 178

Query:   187 QTAGGY-------------PSSGYSHQTTSWNEGNYTNYTSHQYSNYTSDTSGAYSSGTA 233
             QTAGGY             PS+ YS+QT + N+GNYT+YTS+ Y NYT D +  +SS  A
Sbjct:   179 QTAGGYQSTNYNNQTAGSYPSTNYSNQTPASNQGNYTDYTSNPYQNYTPDAANTHSSTIA 238

Query:   234 PATSLQYQQQYKQWADYYSQTEVSCAPGTENLSVASSS--NQVLQPPGVTAGYPTAHSQP 291
                 + YQQ Y+QW +YYSQTEV CAPGTE LS  ++S  +Q    PGVT+  P ++SQP
Sbjct:   239 TTPPVHYQQNYQQWTEYYSQTEVPCAPGTEKLSTPTTSAYSQSFPVPGVTSEMPASNSQP 298

Query:   292 APIYHXXXXXXXXXXXXXXXXPAATSNGSHDSYWKHGTPSFQNRQVSPVQPHYSKPLEQK 351
             AP Y                 P A  + S+D+YW H  PS Q     P Q +Y  PLE K
Sbjct:   299 APSYVQPWRPETDSSHPPSQQPGAAVSTSNDTYWMHQAPSLQAHHPVPPQNNYQSPLETK 358

Query:   352 TSYNN-FQDQHKAACPQGPSSQYAIGQQMAPSYQSPPVQTSPQLDNRRVSKLQIPTNPRI 410
               Y   FQ   +A  PQ  +SQ +  Q  AP     P QT+P +D++RVSK+QIPTNPRI
Sbjct:   359 PLYETPFQGHQRATYPQEMNSQSSFHQ--APLGYRQPTQTAPLVDSQRVSKVQIPTNPRI 416

Query:   411 ASNLALGLPKTDKDSSTANAAAKPAYIGVSLAKSNEKVVSHADSRVEPGTFPKSLCGYVE 470
             ASNL  G  K DKDS+ A+AA  PAY+ VS+ K  +    H  +  +PGTFPKSL G+VE
Sbjct:   417 ASNLPSGFTKMDKDSTAASAAQAPAYVSVSMPKPKD----HTTAMSDPGTFPKSLRGFVE 472

Query:   471 RALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLFPKPTTEAVTKDLPTSTP 530
             RA ARCK D E  + +  + +I+KKA  D TL++RDWD EPL    TT  VT    +S  
Sbjct:   473 RAFARCKDDKEKESCEVALRKIVKKAKEDNTLYTRDWDTEPLSTVTTTN-VTNSESSSAQ 531

Query:   531 LSALSKNKRSPSRRTKSRWEPLPEEKPIDKLASSTNEIVKFSGWIHANEKDRKHISGSVS 590
             LS+L +NK SP+RR KSRWEPL E KP  K AS+ +  VKF  W H NE ++K  S S  
Sbjct:   532 LSSL-QNK-SPTRRPKSRWEPLVEGKPFVKPASTFSSAVKFGVWNHQNENNKKS-SESFQ 588

Query:   591 KEDRLNNIKFHLSEQKSASKSFQRPVKRQRLSADGFKTEDNGDASSDSDKEQSLTSYYSG 650
             K D     K   S Q SA KSFQRPVKRQR S  G  T  + +ASSDSDK+  LT YYS 
Sbjct:   589 KVDAATGFKPTYSGQNSAKKSFQRPVKRQRFSG-GAATAIDDEASSDSDKD--LTPYYSS 645

Query:   651 AIALANSPEERMRRENRSKRFDRGQGNRSETNRFKGKNAGTGNLYVRRASALLISKSFDD 710
             A+ALA S EE+ RR++RSKRF++ QG+    +  K KNA  GNL+ RRA+AL +SK FD+
Sbjct:   646 AMALAGSAEEKKRRDSRSKRFEKIQGHSRGNDLTKPKNANVGNLHSRRATALRLSKVFDE 705

Query:   711 GGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNSQKNYL 770
              GSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDP+TVRPE+VLEKAL MVQ+SQKNYL
Sbjct:   706 SGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPATVRPEDVLEKALIMVQDSQKNYL 765

Query:   771 YKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEG 830
             +KCDQLKSIRQDLTVQRI N LTAKVYETHARLA+E GDLPEYNQC SQLK LYAEG+EG
Sbjct:   766 FKCDQLKSIRQDLTVQRIHNHLTAKVYETHARLALEAGDLPEYNQCLSQLKTLYAEGVEG 825

Query:   831 CCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFR 890
             C +EF+AY LL + LHSNN RELLS MSRLS++ K+D+AV+HAL+VRAAV+SGNY+MFFR
Sbjct:   826 CSLEFAAYSLLYITLHSNNNRELLSSMSRLSEEDKKDEAVRHALSVRAAVTSGNYVMFFR 885

Query:   891 LYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEER 950
             LYKTAPN+N+CLMDLYVEKMR+KAV+ MSRS RPT+PVSY+ QVLGFTG +  +E  +E+
Sbjct:   886 LYKTAPNMNSCLMDLYVEKMRYKAVNFMSRSCRPTIPVSYIVQVLGFTGAA--SEGTDEK 943

Query:   951 DSDGLEECVEWLKAHGASLVTDANGEVQLDAK 982
             ++DG+E+C+EWLK HGA+++TD+NG++ LD K
Sbjct:   944 ETDGMEDCLEWLKTHGANIITDSNGDMLLDTK 975

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

ZFIN\|ZDB-GENE-070410-6 zgc:158262 "zgc:158262" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96PV6 LENG8 "Leukocyte receptor cluster member 8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

POMBASE\|SPBC2A9.11c SPBC2A9.11c "nuclear export factor (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

MGI\|MGI:2142195 Leng8 "leukocyte receptor cluster (LRC) member 8" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

SGD\|S000006249 THP3 "Protein that may have a role in transcription elongation" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0277813 DDB_G0277813 "SAC3/GANP family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

CGD\|CAL0000561 orf19.6271 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AAX8 CaO19.6271 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

FB\|FBgn0038642 Muc91C "Mucin 91C" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029503001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (975 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		991
pfam03399		155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	7e-47
COG5079		646	COG5079, SAC3, Nuclear protein export factor [Intr	8e-10

>gnl\|CDD\|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family	Back alignment and domain information

 Score =  164 bits (417), Expect = 7e-47
 Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 44/197 (22%)

Query: 742 SAPDPSTVRPEEVLEKALQMVQNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHA 801
             P+PS +RP +V                                         V E  A
Sbjct: 1   DEPNPSDLRPLKV----------------------------------------AVLEIGA 20

Query: 802 RLAIENGDLPEYNQCQSQLKILYAEGIEGCCM--EFSAYHLLCVILHSNNKRELLSLMSR 859
           R+A+E GDL ++NQC SQLK LY + +       EF AY+LL + L +N   +  + +  
Sbjct: 21  RIALEKGDLEQFNQCLSQLKELYDDLLGKSPNEAEFIAYYLLYL-LSNNPISDFHTELEL 79

Query: 860 LSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMS 919
           L D+ + D  ++ AL +  A+  GNY  FFRL K AP L  CL++ +++++R +A+  +S
Sbjct: 80  LPDEIRNDPYIQFALELEQALMEGNYHRFFRLLKKAPYLYACLLERFLDRIRKEALKAIS 139

Query: 920 RSYRPTVPVSYVAQVLG 936
           ++YR  +P+SY+A++LG
Sbjct: 140 KAYRS-IPLSYLAELLG 155

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Length = 155

>gnl\|CDD\|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		991
KOG1861		540	consensus Leucine permease transcriptional regulat	100.0
PF03399		204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	100.0
KOG1860		927	consensus Nuclear protein export factor [Intracell	100.0
COG5079		646	SAC3 Nuclear protein export factor [Intracellular	100.0
KOG3151		260	consensus 26S proteasome regulatory complex, subun	99.6
PF10075		143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	99.15
KOG3252		217	consensus Uncharacterized conserved protein [Funct	96.78
PF01399		105	PCI: PCI domain; InterPro: IPR000717 A homology do	95.54
KOG1861		540	consensus Leucine permease transcriptional regulat	94.83
KOG2908		380	consensus 26S proteasome regulatory complex, subun	93.4
KOG0687		393	consensus 26S proteasome regulatory complex, subun	92.96
KOG4414		197	consensus COP9 signalosome, subunit CSN8 [Posttran	90.93
COG5187		412	RPN7 26S proteasome regulatory complex component,	90.23
KOG1464		440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.45
smart00753		88	PAM PCI/PINT associated module.	80.93
smart00088		88	PINT motif in proteasome subunits, Int-6, Nip-1 an	80.93

>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]	Back alignment and domain information

Probab=100.00  E-value=4.1e-98  Score=823.72  Aligned_cols=446  Identities=38%  Similarity=0.602  Sum_probs=327.5

Q ss_pred             HHHHHHHHhhhccChhhHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCC-----ccccccCCCCCC----Ccccccc
Q 001958          465 LCGYVERALARCKGDAEIAASQAVMGEIIKKANSDGTLFSRDWDVEPLFPKP-----TTEAVTKDLPTS----TPLSALS  535 (991)
Q Consensus       465 lr~YVqRaF~~c~~~~dr~~~E~~LKe~It~a~~~gtl~TidWd~ePLp~lp-----~~~~~~~~~~~~----~~~s~~s  535 (991)
                      +.+||+|||++|+.++||+.++..||++|..++..|.+||+|||+||||++-     ..+...+..+.+    +.|.   
T Consensus        58 ~~~y~~r~~~a~~t~~dk~~t~~~lk~~l~~~~~~~~~~t~dw~~ep~p~~~~~~l~~~~~~a~~~p~~~~~~n~f~---  134 (540)
T KOG1861|consen   58 QPTYVERCFDACNTSEDKDPTNPRLKSMLNPYLNFGNATTEDWSAEPLPGPFSESLARPLDYANSFPSLTYNPNNFI---  134 (540)
T ss_pred             hHHHHHHHHHhhcchhhccchhHHHHHhcchhhccCccchhccccCCCCCccCcccCCCcccccCCCccccCCcccc---
Confidence            8899999999999999999999999999999999999999999999999742     222222222200    0010   


Q ss_pred             cccCCCccccCCCCCCCCCCCcccccccccccccccCCcccccccccccccCCCccccccccc--cccccccc--ccccc
Q 001958          536 KNKRSPSRRTKSRWEPLPEEKPIDKLASSTNEIVKFSGWIHANEKDRKHISGSVSKEDRLNNI--KFHLSEQK--SASKS  611 (991)
Q Consensus       536 ~~~rsp~rr~ksrwep~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~~~~--~~~~~~~r--~~sk~  611 (991)
                       .+.+|     +||.|-  .+...       +.+...  ......++.+.+++.-.+++-.+.  .+..+.+.  +.+++
T Consensus       135 -~k~~~-----s~~r~~--~r~~~-------g~v~q~--~~~~~~~ssp~lsd~~~~ss~r~~~r~~~~~~s~s~~~~es  197 (540)
T KOG1861|consen  135 -GKQEP-----SRPRPS--DRESW-------GAVNQG--KEPLSVSSSPSLSDSMNKSSKRSPPRVSKRSSSLSSKSNES  197 (540)
T ss_pred             -cccCC-----CCCCCc--chhcc-------cccccc--ccccccCCCccchhhhhcccccCCcccccccccccccccHh
Confidence             11222     233221  11000       110000  000000011111111000000000  00000000  00011


Q ss_pred             c------CchhhhhhcccCCCcccCCCCCCCCchhhhhccccccchhcccCCHHHHHHHHHHHhhhccCCCCCCcccccC
Q 001958          612 F------QRPVKRQRLSADGFKTEDNGDASSDSDKEQSLTSYYSGAIALANSPEERMRRENRSKRFDRGQGNRSETNRFK  685 (991)
Q Consensus       612 ~------~r~~Kr~r~~~~~~~~~~~~~~ss~~~k~~~l~k~~~~~~~~~~~~ee~~rr~~Ra~RF~~~~~~~~~~~~~~  685 (991)
                      .      .++.+.++.++         ....-+.+         .++.+ .++||++||++|++||..+...+.+.   .
T Consensus       198 ~~~k~~~a~~~~~~~~~~---------~~t~~~~~---------n~~s~-~~~d~e~rr~~Ra~RF~~~~s~s~~~---~  255 (540)
T KOG1861|consen  198 LNKKSGNARANANKRGKG---------AVTPASGK---------NASSV-AGSDEEARRKRRARRFSQGGSRSTNN---N  255 (540)
T ss_pred             hhhhhhhhhhhHHHhccC---------CCCCcccc---------chhhc-cCchHHHHHHHHHHHHhhccccccCC---C
Confidence            1      11111112211         11111111         12222 56789999999999999887543332   2


Q ss_pred             CCCCCCCchhhhhhhhhhhccccCCCCCCcccccCCcCccccccchhhHHhhhccCCCCCCCCCCCHHHHHHHHHHHHhh
Q 001958          686 GKNAGTGNLYVRRASALLISKSFDDGGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPSTVRPEEVLEKALQMVQNS  765 (991)
Q Consensus       686 ~~~~~~~~~~~~r~~~l~~~~~~~~g~s~~~~d~dwd~~~IVGTCq~LEK~YlRLTaaPdPsdVRPp~VL~KTLdyLl~k  765 (991)
                      |....+.++.                   ..-..+|.+++||||||+|||+|||||++|+|++|||++||+|+|.+|+.+
T Consensus       256 p~~~~~~n~~-------------------~~~~~~~q~l~IvGtCq~lEKsyLRLTsAPdPstVRP~~VL~ksL~~vkdk  316 (540)
T KOG1861|consen  256 PNLEDSKNLN-------------------SIVSPSHQKLHIVGTCQELEKSYLRLTSAPDPSTVRPLEVLKKSLCLVKDK  316 (540)
T ss_pred             cchhhccchh-------------------hccCcccCceEEEEechhHHHhHhhhccCCCccccCCHHHHHHHHHHHHHH
Confidence            2222222221                   112346778999999999999999999999999999999999999999998


Q ss_pred             ch---hhHHHHHHHhhhHHhhhHhhccchhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHcCcCCChhHHHHHHHHH
Q 001958          766 QK---NYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLC  842 (991)
Q Consensus       766 ~k---~Y~FI~DRLRSIRQDLTVQ~I~neFTV~VYE~hARfaLeagDL~EFNQCqtQLk~LY~egi~gnEaEF~AYrILY  842 (991)
                      ++   +|.|+||||||||||||||+|+|+|||+|||+||||+||+||++||||||+||+.||.++++++..||.||+|||
T Consensus       317 ~k~~~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALEkGD~~EfNQCQtQLk~LY~egipg~~~EF~AYriLY  396 (540)
T KOG1861|consen  317 WKAKANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALEKGDLEEFNQCQTQLKALYSEGIPGAYLEFTAYRILY  396 (540)
T ss_pred             HHhhccHHHHHHHHHHHhhhhhhheeccceeeeeehhhhHHHHhcCCHHHHHHHHHHHHHHHccCCCCchhhHHHHHHHH
Confidence            65   999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCchHHHHHHHHhhhHHHhhCHHHHHHHHHHHHHHhCCHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHc
Q 001958          843 VILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSY  922 (991)
Q Consensus       843 ~Ll~~nN~sDLl~~L~~Lp~eikkdp~VqfAL~Vr~Ala~GNYvRFFrLyksAP~L~acLMd~f~~r~R~~ALk~I~KAY  922 (991)
                      +|++ .|..||+..|..|++|++++++|+|||+||.|+.+||||+||+||+.+|.|..||||+|++++|..||.+|||+|
T Consensus       397 ~i~t-kN~~di~sll~~lt~E~ked~~V~hAL~vR~A~~~GNY~kFFrLY~~AP~M~~yLmdlF~erER~~Al~ii~Ksy  475 (540)
T KOG1861|consen  397 YIFT-KNYPDILSLLRDLTEEDKEDEAVAHALEVRSAVTLGNYHKFFRLYLTAPNMSGYLMDLFLERERKKALTIICKSY  475 (540)
T ss_pred             HHHh-cCchHHHHHHHhccHhhccCHHHHHHHHHHHHHHhccHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHc
Confidence            9998 577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhhCCCCCCCCCcccccccCCCHHHHHHHHHHcCCeEeeCCCCceEEecccccCccC
Q 001958          923 RPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQLDAKVHLIQPY  989 (991)
Q Consensus       923 rptIPL~~LaelLgFds~d~a~~~~e~~~~~~lEEc~eFLk~~Gl~v~~D~~Ge~~ld~K~S~~~~~  989 (991)
                      +|+|+++||++.|.|++.               |+|.+||+.++|.  .|..|..++|.|++.+.++
T Consensus       476 rP~i~~~fi~~~laf~~~---------------e~c~~~l~~~~~~--~~~~g~~~~~~~~~s~~i~  525 (540)
T KOG1861|consen  476 RPTITVDFIASELAFDSM---------------EDCVNFLNEQNLT--YDSLGPQILDKNASSSNIK  525 (540)
T ss_pred             CCCccHHHHhhhhhhchH---------------HHHHHHHhccCcc--ccccCCccccccccccccc
Confidence            999999999999999987               8999999999964  4556777777777765543

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]	Back alignment and domain information

>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8	Back alignment and domain information

>KOG3252 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins	Back alignment and domain information

>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]	Back alignment and domain information

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>smart00753 PAM PCI/PINT associated module	Back alignment and domain information

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		991
3t5v_A		316	Sac3:thp1:sem1 Complex Length = 316		4e-04

>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex Length = 316

Back alignment and structure

Iteration: 1

Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 52/251 (20%) Query: 743 APDPSTVRPEEVLEKALQMVQNSQKNYL-----YKCDQLKSIRQDLTVQ----------- 786 +P PS VRP +L K L + ++ L + D+++SIRQD T Q Sbjct: 2 SPLPSDVRPPHILVKTLDYIVDNLLTTLPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCN 61 Query: 787 ----RIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAE--GIEGCC---MEFSA 837 RI + + +++ +++ +L + ++ L +Y + G C EF A Sbjct: 62 ERIVRIHLLILHIMVKSNVEFSLQQ-ELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRA 120 Query: 838 YHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSSGNYI----------- 886 Y LL I + RL QDK V+ AL R +S+ Y Sbjct: 121 YALLSKIRDPQYDENI----QRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCL 176 Query: 887 ----MFFRLYKTA--PNLNTCLMDLYVEKMRFKAVSCMS----RSYRPTVPVSYVAQVLG 936 FF+L ++ P L + +++ +RF A+ +S + ++P +P Y+ +L Sbjct: 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKP-IPFIYLENMLL 235 Query: 937 FTGVSPTNEEC 947 F E C Sbjct: 236 FNNRQEIIEFC 246

PyMOL of 3t5v

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		991
3t5v_A		316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	3e-55
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
3h0g_A		1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-06
1twf_A		1733	B220, DNA-directed RNA polymerase II largest subun	2e-06
1twf_A		1733	B220, DNA-directed RNA polymerase II largest subun	7e-06

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 316	Back alignment and structure

 Score =  193 bits (492), Expect = 3e-55
 Identities = 56/280 (20%), Positives = 101/280 (36%), Gaps = 63/280 (22%)

Query: 743 APDPSTVRPEEVLEKALQMV-----QNSQKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVY 797
           +P PS VRP  +L K L  +         ++  +  D+++SIRQD T Q           
Sbjct: 2   SPLPSDVRPPHILVKTLDYIVDNLLTTLPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCN 61

Query: 798 ETHARLAI--------------ENGDLPEYNQCQSQLKILYAE-----GIEGCCMEFSAY 838
           E   R+ +                 +L + ++    L  +Y +     G      EF AY
Sbjct: 62  ERIVRIHLLILHIMVKSNVEFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAY 121

Query: 839 HLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVRAAVSS---------------G 883
            LL  I        +     RL     QDK V+ AL  R  +S+                
Sbjct: 122 ALLSKIRDPQYDENIQ----RLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLN 177

Query: 884 NYIMFFRLYKTA--PNLNTCLMDLYVEKMRFKAVSCMSRSYRP---TVPVSYVAQVLGFT 938
            Y  FF+L ++   P L    + +++  +RF A+  +S +       +P  Y+  +L F 
Sbjct: 178 FYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLF- 236

Query: 939 GVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQ 978
                         +  +E +E+   +   ++     +++
Sbjct: 237 --------------NNRQEIIEFCNYYSIEIINGDAADLK 262

PyMOL of 3t5v

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752	Back alignment and structure

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733	Back alignment and structure

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		991
3t5v_A		316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	100.0
4b0z_A		229	RPN12, 26S proteasome regulatory subunit RPN12; pr	100.0
4b4t_T		274	26S proteasome regulatory subunit RPN12; hydrolase	100.0
1rz4_A		226	Eukaryotic translation initiation factor 3 subuni;	99.24
3txn_A		394	26S proteasome regulatory complex subunit P42B; PC	97.19
4b4t_R		429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.22
4b4t_O		393	26S proteasome regulatory subunit RPN9; hydrolase,	95.32
4b4t_Q		434	26S proteasome regulatory subunit RPN6; hydrolase,	95.1
4b4t_P		445	26S proteasome regulatory subunit RPN5; hydrolase,	94.01
3chm_A		169	COP9 signalosome complex subunit 7; heat/ARM repea	91.93
3t5x_A		203	PCI domain-containing protein 2; PCI, mRNA nuclear	91.41

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.8e-53  Score=460.17  Aligned_cols=212  Identities=26%  Similarity=0.403  Sum_probs=189.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhh-----chhhHHHHHHHhhhHHhhhHhhccchhhHHHHHHHHHHHHh------cCC-
Q 001958          742 SAPDPSTVRPEEVLEKALQMVQNS-----QKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIE------NGD-  809 (991)
Q Consensus       742 aaPdPsdVRPp~VL~KTLdyLl~k-----~k~Y~FI~DRLRSIRQDLTVQ~I~neFTV~VYE~hARfaLe------agD-  809 (991)
                      ++|+|++|||++||++||+||+.+     ..+|+||||||||||||||||+|+++|||+|||+||||||+      .+| 
T Consensus         1 ~~P~P~~vRP~~vL~~Tl~yL~~~~~~~~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~~~   80 (316)
T 3t5v_A            1 GSPLPSDVRPPHILVKTLDYIVDNLLTTLPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNV   80 (316)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHHTGGGTTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCChhhcCCHHHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            479999999999999999999985     36899999999999999999999999999999999999974      343 


Q ss_pred             -------hhhHHHHHHHHHHHHHcC-----cCCChhHHHHHHHHHHhhccCchHHHHHHHHhhhHHHhhCHHHHHHHHHH
Q 001958          810 -------LPEYNQCQSQLKILYAEG-----IEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVR  877 (991)
Q Consensus       810 -------L~EFNQCqtQLk~LY~eg-----i~gnEaEF~AYrILY~Ll~~nN~sDLl~~L~~Lp~eikkdp~VqfAL~Vr  877 (991)
                             ++++++|+.+|++||++.     ..+||+||+||+|||+|.+    .+++..+..||.+++++|.|++||+|+
T Consensus        81 ~f~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~----~~~~~~l~~Lp~~i~~~p~Vq~AL~l~  156 (316)
T 3t5v_A           81 EFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRD----PQYDENIQRLPKHIFQDKLVQMALCFR  156 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTC----THHHHHHTTSCHHHHTSHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcc----chHHHHHHhCCHHHhcCHHHHHHHHHH
Confidence                   346778888999999972     3479999999999999853    478889999999999999999999999


Q ss_pred             HHHH---------------hCCHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCHHHHHHhhCC
Q 001958          878 AAVS---------------SGNYIMFFRLYKT--APNLNTCLMDLYVEKMRFKAVSCMSRSYR---PTVPVSYVAQVLGF  937 (991)
Q Consensus       878 ~Ala---------------~GNYvRFFrLyks--AP~L~acLMd~f~~r~R~~ALk~I~KAYr---ptIPL~~LaelLgF  937 (991)
                      +|+.               +|||+|||+|+++  +|+|++|||++||++||..||++|+|||+   ++||+++|+++|+|
T Consensus       157 ~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~F  236 (316)
T 3t5v_A          157 RVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLF  236 (316)
T ss_dssp             HHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTC
T ss_pred             HHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCC
Confidence            9996               5999999999997  89999999999999999999999999997   58999999999999


Q ss_pred             CCCCCCCcccccccCCCHHHHHHHHHHcCCeEeeC
Q 001958          938 TGVSPTNEECEERDSDGLEECVEWLKAHGASLVTD  972 (991)
Q Consensus       938 ds~d~a~~~~e~~~~~~lEEc~eFLk~~Gl~v~~D  972 (991)
                      +++               +||++||+.|||.+..|
T Consensus       237 ds~---------------ee~~~F~~~~gl~~~~~  256 (316)
T 3t5v_A          237 NNR---------------QEIIEFCNYYSIEIING  256 (316)
T ss_dssp             SSH---------------HHHHHHHHHTTCCEETT
T ss_pred             CCH---------------HHHHHHHHHCCCeEeCC
Confidence            988               89999999999999754

PyMOL of 3t5v

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}	Back alignment and structure

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18	Back alignment and structure

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A	Back alignment and structure

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}	Back alignment and structure

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		991
d1rz4a1		85	Eukaryotic translation initiation factor 3 subunit	95.79
d1rz4a2		130	Eukaryotic translation initiation factor 3 subunit	91.35

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0066  Score=53.11  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHhhCCCCCCCCCcccccccCCCHHHHHHHHHHcCCeEeeCCCCce
Q 001958          906 YVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEV  977 (991)
Q Consensus       906 f~~r~R~~ALk~I~KAYrptIPL~~LaelLgFds~d~a~~~~e~~~~~~lEEc~eFLk~~Gl~v~~D~~Ge~  977 (991)
                      |.+.+|..+...+..+|+ .|+...|+++||..++               .++.+|++.|||.+..  +|.+
T Consensus         3 FedsIR~~i~~vv~iTyq-~I~~~~L~e~LG~~~d---------------~~L~~~i~~~gW~~~~--~g~v   56 (85)
T d1rz4a1           3 FEDSVRKFICHVVGITYQ-HIDRWLLAEMLGDLSD---------------SQLKVWMSKYGWSADE--SGQI   56 (85)
T ss_dssp             HHHHHHHHHHHHHHHHCS-EECHHHHHHHTTSCCH---------------HHHHHHHHHHTCEECC----CE
T ss_pred             HHHHHHHHHHhheeeeee-EEcHHHHHHHhCCCCH---------------HHHHHHHHHcCCEEcC--CCEE
Confidence            678999999999999999 9999999999998776               7899999999998743  3544

PyMOL of d1rz4a1

>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure