Citrus Sinensis ID: 001962
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 990 | 2.2.26 [Sep-21-2011] | |||||||
| F4J8D3 | 1176 | Protein TPLATE OS=Arabido | yes | no | 0.997 | 0.840 | 0.828 | 0.0 |
| >sp|F4J8D3|TPLAT_ARATH Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1 | Back alignment and function desciption |
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Score = 1669 bits (4321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1006 (82%), Positives = 914/1006 (90%), Gaps = 18/1006 (1%)
Query: 1 MLDKSDNVSKVAFESVGRLFQEFESKRMSRLAGDKLVDSENSLAIRSNWVSAMVNFVWKK 60
MLDKSD VSKVAFESVGRLFQEF+SKRMSRLAGDKLVDSENSLAIRS WVS+MV+ VW+K
Sbjct: 173 MLDKSDAVSKVAFESVGRLFQEFDSKRMSRLAGDKLVDSENSLAIRSKWVSSMVDIVWRK 232
Query: 61 RSALMARSLVLPIESFRATVFPIVYSVKAVASGRVDVIRRLSKDSNGVNG---TQVDSNA 117
RSALMARSLVLP+E+FRATVFP+V++VKAVASG V+VIR+LSK S+ T VDSNA
Sbjct: 233 RSALMARSLVLPVETFRATVFPLVFAVKAVASGSVEVIRQLSKASSAAAAANATVVDSNA 292
Query: 118 EKLVGVSDVVTHLVPFLASSLDPAVIFEVGINMLYLADVPGGKTEWASQSIIAILTLWDR 177
EKLVGVSD+VTHL PFLASSLDPA+IFEVGINMLYLADV GGK EWASQSIIAILTLWDR
Sbjct: 293 EKLVGVSDLVTHLAPFLASSLDPALIFEVGINMLYLADVAGGKPEWASQSIIAILTLWDR 352
Query: 178 QEFSSARESIVRAVVTNLHLLDLHLQVSLFRRLLLMVRNLRAESDRMHALACICRTALCV 237
QEFSSARESIVRAVVTNLHLLDLH+QVSLFRRLLLMVRNLRAESDRMHALACICRTALCV
Sbjct: 353 QEFSSARESIVRAVVTNLHLLDLHMQVSLFRRLLLMVRNLRAESDRMHALACICRTALCV 412
Query: 238 DLFAKESVRRGQKPLPGTDIASLFEDPRIRDDLNSVTSKSLFREELVASLVESCFQLSLP 297
LFA+ES RRGQKPLPGTDI SLFED RI+DDLNSVTSKSLFREELVA LVESCFQLSLP
Sbjct: 413 HLFARESARRGQKPLPGTDIISLFEDARIKDDLNSVTSKSLFREELVAMLVESCFQLSLP 472
Query: 298 LPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAIDCYLKL 357
LPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYA+DCYLKL
Sbjct: 473 LPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAVDCYLKL 532
Query: 358 LVRLCHIYDTRGGVKRVKDGASQDQILNETRLQNMQRQLVKDLHEVNTPRMLARLIWAIA 417
LVRLCHIYDTRGGVKR+KDGASQDQILNETRLQN+QR+LVKDL EVNTPR+L RLIW IA
Sbjct: 533 LVRLCHIYDTRGGVKRLKDGASQDQILNETRLQNLQRELVKDLQEVNTPRILGRLIWTIA 592
Query: 418 EHIDLEGLDPLLADDPEDPLNIIISNIHKVLFNVDSSANTSNRLQDVQAVLISAQRLGSR 477
EHIDLEGLDPLLADDP+DPLNIII+NIHKVLFN+D++A TSNRLQDVQAVL+ AQR+GSR
Sbjct: 593 EHIDLEGLDPLLADDPDDPLNIIIANIHKVLFNLDAAATTSNRLQDVQAVLLCAQRMGSR 652
Query: 478 NPRAGQLLTKELEEFRNSTLADSVNKHQCRLILQRIKYASSHPENKWACVNEARGDYPFS 537
+ RAGQLLTKELEE+RN AD+V+KHQ RLILQRIKY S+ PE KWA V+E RGDYPFS
Sbjct: 653 HARAGQLLTKELEEYRNHAAADTVSKHQTRLILQRIKYVSNLPERKWAGVSETRGDYPFS 712
Query: 538 HHKLTVQFYEASGAQDRKLEGLVHKAILELWRPNPSELTLLLTKGIEATSLKASPTAYTL 597
HHKLTVQFYE S AQDRKLEGL+HKAILELWRP P+ELTL LTKG+++TS+K PTAY L
Sbjct: 713 HHKLTVQFYEPSAAQDRKLEGLIHKAILELWRPKPTELTLFLTKGVDSTSIKVPPTAYPL 772
Query: 598 TGSSDPCYVEAYHLADSSDGKITLHLKVLNLTELELNRVDIRVGLSGALYFMNGSPQAVR 657
TGSSDPCY+EAYHLAD++DG++TLHLK++NLTELELNRVDIRVGLSGALYFM+GSPQAVR
Sbjct: 773 TGSSDPCYIEAYHLADTNDGRVTLHLKIINLTELELNRVDIRVGLSGALYFMDGSPQAVR 832
Query: 658 QLRNLVSQDPVICSVTVGVSHFERCAFWVQVLYYPFHGSGAIGDYEGDYAEEDPQIMRQK 717
QLRNLVSQDPV CSVTVGVS FERC FWVQVLYYPF GA G+Y+GDY EEDPQIM+QK
Sbjct: 833 QLRNLVSQDPVQCSVTVGVSQFERCGFWVQVLYYPFR--GARGEYDGDYIEEDPQIMKQK 890
Query: 718 RSARPELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAIVEYTGTYIYEGSGF 777
R ++ ELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPA+ EYTGTY+YEGSGF
Sbjct: 891 RGSKAELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAVAEYTGTYMYEGSGF 950
Query: 778 KATAAQQYGTSPFFSGLKSLSSKPFHIVCSHIIQAVAGFQLCYAAKTWYGGFVGMMIFGA 837
ATAAQQYG SPF SGLKSLSSKPFH VCSHII+ VAGFQLCYAAKTW+GGFVGMMIFGA
Sbjct: 951 MATAAQQYGASPFLSGLKSLSSKPFHRVCSHIIRTVAGFQLCYAAKTWHGGFVGMMIFGA 1010
Query: 838 SEVSRNVDLGDETTTMMCKFVVRASDSSITKEIGSDLQGWLDDLTDGGVEYMPEDEVKAS 897
SEVSRN+DLGDETTTMMCKFVVRAS++SITK+I SD+QGW DDLTDGGVEYMPEDEVKA+
Sbjct: 1011 SEVSRNMDLGDETTTMMCKFVVRASEASITKQIESDIQGWCDDLTDGGVEYMPEDEVKAT 1070
Query: 898 AAERLRISMERIALLKAARPKKTPK------------TDEEEENEVEEEEEDKKKNKEDG 945
AAE+L+ISMERIALLKAA+PKKT K +EE+++E +E+++K++ K+
Sbjct: 1071 AAEKLKISMERIALLKAAQPKKTSKIEEESENEEEEEGEEEDDDEEVKEKKEKEEGKDKE 1130
Query: 946 EEDGKAKGPSTLSKLTAEEAEHLALQAAVLQEWHMRCKDRS-AKVN 990
E+ K K T SKLTAEE EH+ALQAAVLQEWH+ CKDR KVN
Sbjct: 1131 EKKKKEKEKGTFSKLTAEETEHMALQAAVLQEWHILCKDRKYTKVN 1176
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Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 990 | ||||||
| 255536981 | 1164 | conserved hypothetical protein [Ricinus | 1.0 | 0.850 | 0.868 | 0.0 | |
| 225452161 | 1179 | PREDICTED: protein TPLATE-like [Vitis vi | 1.0 | 0.839 | 0.845 | 0.0 | |
| 356558753 | 1164 | PREDICTED: uncharacterized protein LOC10 | 0.995 | 0.847 | 0.864 | 0.0 | |
| 449459844 | 1160 | PREDICTED: protein TPLATE-like [Cucumis | 0.996 | 0.850 | 0.867 | 0.0 | |
| 296090248 | 1140 | unnamed protein product [Vitis vinifera] | 0.985 | 0.856 | 0.862 | 0.0 | |
| 449498827 | 1162 | PREDICTED: protein TPLATE-like [Cucumis | 0.996 | 0.849 | 0.866 | 0.0 | |
| 356571497 | 1161 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.848 | 0.863 | 0.0 | |
| 297832756 | 1176 | hypothetical protein ARALYDRAFT_477337 [ | 0.997 | 0.840 | 0.828 | 0.0 | |
| 30678420 | 1176 | TPLATE protein [Arabidopsis thaliana] gi | 0.997 | 0.840 | 0.828 | 0.0 | |
| 6016734 | 1192 | unknown protein [Arabidopsis thaliana] g | 0.997 | 0.828 | 0.815 | 0.0 |
| >gi|255536981|ref|XP_002509557.1| conserved hypothetical protein [Ricinus communis] gi|223549456|gb|EEF50944.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1777 bits (4602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/992 (86%), Positives = 938/992 (94%), Gaps = 2/992 (0%)
Query: 1 MLDKSDNVSKVAFESVGRLFQEFESKRMSRLAGDKLVDSENSLAIRSNWVSAMVNFVWKK 60
MLDKSD VSKVAFESVGRLF EF+SKRMSRLAGDKLVDSENSLAIRSNWVS++++F+WK+
Sbjct: 173 MLDKSDAVSKVAFESVGRLFHEFDSKRMSRLAGDKLVDSENSLAIRSNWVSSIIDFIWKR 232
Query: 61 RSALMARSLVLPIESFRATVFPIVYSVKAVASGRVDVIRRLSKDSNGVNGTQV-DSNAEK 119
+SALM+RSL+LP+E+FRATVFP+VY+VKAVASG V+VIR++SK ++GVN T V DS AEK
Sbjct: 233 KSALMSRSLILPVENFRATVFPLVYAVKAVASGNVEVIRKVSKVASGVNATSVVDSTAEK 292
Query: 120 LVGVSDVVTHLVPFLASSLDPAVIFEVGINMLYLADVPGGKTEWASQSIIAILTLWDRQE 179
LVGV+DVVTHL PFLASSLDPA+IFEVGINMLYLADVPGGK EWASQSIIAILTLWDRQE
Sbjct: 293 LVGVNDVVTHLAPFLASSLDPALIFEVGINMLYLADVPGGKPEWASQSIIAILTLWDRQE 352
Query: 180 FSSARESIVRAVVTNLHLLDLHLQVSLFRRLLLMVRNLRAESDRMHALACICRTALCVDL 239
FSSARESIVRAVVTNLHLLDLH+QVSLF+RLLLMVRNLRAESDRMHALACICRTALCVDL
Sbjct: 353 FSSARESIVRAVVTNLHLLDLHMQVSLFKRLLLMVRNLRAESDRMHALACICRTALCVDL 412
Query: 240 FAKESVRRGQKPLPGTDIASLFEDPRIRDDLNSVTSKSLFREELVASLVESCFQLSLPLP 299
FAKESVRRGQKPL GTDIASLFED RIRDDLNS+TSKSLFREELVASLVESCFQLSLPLP
Sbjct: 413 FAKESVRRGQKPLAGTDIASLFEDARIRDDLNSITSKSLFREELVASLVESCFQLSLPLP 472
Query: 300 EQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAIDCYLKLLV 359
EQ++SGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYA+DCYLKLLV
Sbjct: 473 EQQSSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAVDCYLKLLV 532
Query: 360 RLCHIYDTRGGVKRVKDGASQDQILNETRLQNMQRQLVKDLHEVNTPRMLARLIWAIAEH 419
RLCHIYDTRGGVK VKDGASQDQILNETRLQN+QR+LVKDL EV+TPR+ ARLIWAIAEH
Sbjct: 533 RLCHIYDTRGGVKTVKDGASQDQILNETRLQNLQRELVKDLREVSTPRICARLIWAIAEH 592
Query: 420 IDLEGLDPLLADDPEDPLNIIISNIHKVLFNVDSSANTSNRLQDVQAVLISAQRLGSRNP 479
I+L+GLDPLLADDPEDPLNIIISNIHKVLFN+D+SANTSNRLQDVQAVL+SAQRLGSRNP
Sbjct: 593 INLDGLDPLLADDPEDPLNIIISNIHKVLFNIDASANTSNRLQDVQAVLLSAQRLGSRNP 652
Query: 480 RAGQLLTKELEEFRNSTLADSVNKHQCRLILQRIKYASSHPENKWACVNEARGDYPFSHH 539
RAGQLL KELEEFRN+ LADSVNKHQCRLILQR+KY + P+NKWA V+EARGDYPFSHH
Sbjct: 653 RAGQLLIKELEEFRNNVLADSVNKHQCRLILQRVKYIQNCPDNKWAGVSEARGDYPFSHH 712
Query: 540 KLTVQFYEASGAQDRKLEGLVHKAILELWRPNPSELTLLLTKGIEATSLKASPTAYTLTG 599
KLTVQFYEA+ AQDRKLEGLVHKAILELW P P+ELT+LLTKGI++ LK P AYTLTG
Sbjct: 713 KLTVQFYEAAAAQDRKLEGLVHKAILELWNPEPNELTILLTKGIDSKLLKVMPAAYTLTG 772
Query: 600 SSDPCYVEAYHLADSSDGKITLHLKVLNLTELELNRVDIRVGLSGALYFMNGSPQAVRQL 659
SSDPCYVEAYHLADS DG+I+LHLKVLNLTELELNRVDIRVGLSG+LYFM+GSPQAVRQL
Sbjct: 773 SSDPCYVEAYHLADSGDGRISLHLKVLNLTELELNRVDIRVGLSGSLYFMDGSPQAVRQL 832
Query: 660 RNLVSQDPVICSVTVGVSHFERCAFWVQVLYYPFHGSGAIGDYEGDYAEEDPQIMRQKRS 719
RNLVSQDPV+CSVTVGVSHFERCA WVQVLYYPF+GSGAIGDY+GDYAEEDPQI+RQKRS
Sbjct: 833 RNLVSQDPVLCSVTVGVSHFERCALWVQVLYYPFYGSGAIGDYDGDYAEEDPQIVRQKRS 892
Query: 720 ARPELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAIVEYTGTYIYEGSGFKA 779
RPELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPA+VEYTGTY+YEGSGFKA
Sbjct: 893 LRPELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAVVEYTGTYLYEGSGFKA 952
Query: 780 TAAQQYGTSPFFSGLKSLSSKPFHIVCSHIIQAVAGFQLCYAAKTWYGGFVGMMIFGASE 839
TAAQQYG+SPF +GLKSLSSKPFH VCSHII+ VAGFQLCYAAKTW+GGF+G+MIFGASE
Sbjct: 953 TAAQQYGSSPFLNGLKSLSSKPFHSVCSHIIRTVAGFQLCYAAKTWFGGFLGLMIFGASE 1012
Query: 840 VSRNVDLGDETTTMMCKFVVRASDSSITKEIGSDLQGWLDDLTDGGVEYMPEDEVKASAA 899
VSRNVDLGDETTTM+CKFVVRASD+ ITKEI SDLQGWLDDLTDGGVEYMPEDEVK +AA
Sbjct: 1013 VSRNVDLGDETTTMVCKFVVRASDALITKEIESDLQGWLDDLTDGGVEYMPEDEVKEAAA 1072
Query: 900 ERLRISMERIALLKAA-RPKKTPKTDEEEENEVEEEEEDKKKNKEDGEEDGKAKGPSTLS 958
ERLRISMERIALLKAA RP KTPK+D+EEE E EEE+E KK+ KE + + +K TLS
Sbjct: 1073 ERLRISMERIALLKAAQRPPKTPKSDDEEEGEEEEEDEGKKEKKEKKDGEENSKPKGTLS 1132
Query: 959 KLTAEEAEHLALQAAVLQEWHMRCKDRSAKVN 990
KLTAEE EH+ALQ+AVLQEWHM CK+RSA+VN
Sbjct: 1133 KLTAEEVEHMALQSAVLQEWHMLCKERSAQVN 1164
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452161|ref|XP_002263932.1| PREDICTED: protein TPLATE-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356558753|ref|XP_003547667.1| PREDICTED: uncharacterized protein LOC100787122 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449459844|ref|XP_004147656.1| PREDICTED: protein TPLATE-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|296090248|emb|CBI40067.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449498827|ref|XP_004160646.1| PREDICTED: protein TPLATE-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356571497|ref|XP_003553913.1| PREDICTED: uncharacterized protein LOC100781324 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297832756|ref|XP_002884260.1| hypothetical protein ARALYDRAFT_477337 [Arabidopsis lyrata subsp. lyrata] gi|297330100|gb|EFH60519.1| hypothetical protein ARALYDRAFT_477337 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30678420|ref|NP_186827.2| TPLATE protein [Arabidopsis thaliana] gi|357580502|sp|F4J8D3.1|TPLAT_ARATH RecName: Full=Protein TPLATE gi|332640192|gb|AEE73713.1| TPLATE protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|6016734|gb|AAF01560.1|AC009325_30 unknown protein [Arabidopsis thaliana] gi|6091721|gb|AAF03433.1|AC010797_9 unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 990 | ||||||
| TAIR|locus:2082299 | 1176 | TPLATE "AT3G01780" [Arabidopsi | 0.923 | 0.777 | 0.823 | 0.0 |
| TAIR|locus:2082299 TPLATE "AT3G01780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3909 (1381.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 757/919 (82%), Positives = 822/919 (89%)
Query: 1 MLDKSDNVSKVAFESVGRLFQEFESKRMSRLAGDKLVDSENSLAIRSNWVSAMVNFVWKK 60
MLDKSD VSKVAFESVGRLFQEF+SKRMSRLAGDKLVDSENSLAIRS WVS+MV+ VW+K
Sbjct: 173 MLDKSDAVSKVAFESVGRLFQEFDSKRMSRLAGDKLVDSENSLAIRSKWVSSMVDIVWRK 232
Query: 61 RSALMARSLVLPIESFRATVFPIVYSVKAVASGRVDVIRRLSKDSNGV---NGTQVDSNA 117
RSALMARSLVLP+E+FRATVFP+V++VKAVASG V+VIR+LSK S+ N T VDSNA
Sbjct: 233 RSALMARSLVLPVETFRATVFPLVFAVKAVASGSVEVIRQLSKASSAAAAANATVVDSNA 292
Query: 118 EKLVGVSDVVTHLVPFLASSLDPAVIFEVGINMLYLADVPGGKTEWASQSIIAILTLWDR 177
EKLVGVSD+VTHL PFLASSLDPA+IFEVGINMLYLADV GGK EWASQSIIAILTLWDR
Sbjct: 293 EKLVGVSDLVTHLAPFLASSLDPALIFEVGINMLYLADVAGGKPEWASQSIIAILTLWDR 352
Query: 178 QEFSSARESIVRAVVTNXXXXXXXXQVSLFRRLLLMVRNLRAESDRMHALACICRTALCV 237
QEFSSARESIVRAVVTN QVSLFRRLLLMVRNLRAESDRMHALACICRTALCV
Sbjct: 353 QEFSSARESIVRAVVTNLHLLDLHMQVSLFRRLLLMVRNLRAESDRMHALACICRTALCV 412
Query: 238 DLFAKESVRRGQKPLPGTDIASLFEDPRIRDDLNSVTSKSLFREELVASLVESCFQLSLP 297
LFA+ES RRGQKPLPGTDI SLFED RI+DDLNSVTSKSLFREELVA LVESCFQLSLP
Sbjct: 413 HLFARESARRGQKPLPGTDIISLFEDARIKDDLNSVTSKSLFREELVAMLVESCFQLSLP 472
Query: 298 LPEQKNSGMESRVIXXXXXXXXXXXXNWTEPALEVVEVCRPCVKWDCDGRTYAIDCYLKL 357
LPEQKNSGMESRVI NWTEPALEVVEVCRPCVKWDCDGRTYA+DCYLKL
Sbjct: 473 LPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVEVCRPCVKWDCDGRTYAVDCYLKL 532
Query: 358 LVRLCHIYDTRGGVKRVKDGASQDQILNETRLQNMQRQLVKDLHEVNTPRMLARLIWAIA 417
LVRLCHIYDTRGGVKR+KDGASQDQILNETRLQN+QR+LVKDL EVNTPR+L RLIW IA
Sbjct: 533 LVRLCHIYDTRGGVKRLKDGASQDQILNETRLQNLQRELVKDLQEVNTPRILGRLIWTIA 592
Query: 418 EHIXXXXXXXXXXXXXXXXXNIIISNIHKVLFNVDSSANTSNRLQDVQAVLISAQRLGSR 477
EHI NIII+NIHKVLFN+D++A TSNRLQDVQAVL+ AQR+GSR
Sbjct: 593 EHIDLEGLDPLLADDPDDPLNIIIANIHKVLFNLDAAATTSNRLQDVQAVLLCAQRMGSR 652
Query: 478 NPRAGQLLTKELEEFRNSTLADSVNKHQCRLILQRIKYASSHPENKWACVNEARGDYPFS 537
+ RAGQLLTKELEE+RN AD+V+KHQ RLILQRIKY S+ PE KWA V+E RGDYPFS
Sbjct: 653 HARAGQLLTKELEEYRNHAAADTVSKHQTRLILQRIKYVSNLPERKWAGVSETRGDYPFS 712
Query: 538 HHKLTVQFYEASGAQDRKLEGLVHKAILELWRPNPSELTLLLTKGIEATSLKASPTAYTL 597
HHKLTVQFYE S AQDRKLEGL+HKAILELWRP P+ELTL LTKG+++TS+K PTAY L
Sbjct: 713 HHKLTVQFYEPSAAQDRKLEGLIHKAILELWRPKPTELTLFLTKGVDSTSIKVPPTAYPL 772
Query: 598 TGSSDPCYVEAYHLADSSDGKITLHLKVLNLTELELNRVDIRVGLSGALYFMNGSPQAVR 657
TGSSDPCY+EAYHLAD++DG++TLHLK++NLTELELNRVDIRVGLSGALYFM+GSPQAVR
Sbjct: 773 TGSSDPCYIEAYHLADTNDGRVTLHLKIINLTELELNRVDIRVGLSGALYFMDGSPQAVR 832
Query: 658 QLRNLVSQDPVICSVTVGVSHFERCAFWVQVLYYPFHGSGAIGDYEGDYAEEDPQIMRQK 717
QLRNLVSQDPV CSVTVGVS FERC FWVQVLYYPF G A G+Y+GDY EEDPQIM+QK
Sbjct: 833 QLRNLVSQDPVQCSVTVGVSQFERCGFWVQVLYYPFRG--ARGEYDGDYIEEDPQIMKQK 890
Query: 718 RSARPELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAIVEYTGTYIYEGSGF 777
R ++ ELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPA+ EYTGTY+YEGSGF
Sbjct: 891 RGSKAELGEPVILRCQPYKIPLTELLLPHKISPVEFFRLWPSLPAVAEYTGTYMYEGSGF 950
Query: 778 KATAAQQYGTSPFFSGLKSLSSKPFHIVCSHIIQAVAGFQLCYAAKTWYGGFVGMMIFGA 837
ATAAQQYG SPF SGLKSLSSKPFH VCSHII+ VAGFQLCYAAKTW+GGFVGMMIFGA
Sbjct: 951 MATAAQQYGASPFLSGLKSLSSKPFHRVCSHIIRTVAGFQLCYAAKTWHGGFVGMMIFGA 1010
Query: 838 SEVSRNVDLGDETTTMMCKFVVRASDSSITKEIGSDLQGWLDDLTDGGVEYMPEDEVKAS 897
SEVSRN+DLGDETTTMMCKFVVRAS++SITK+I SD+QGW DDLTDGGVEYMPEDEVKA+
Sbjct: 1011 SEVSRNMDLGDETTTMMCKFVVRASEASITKQIESDIQGWCDDLTDGGVEYMPEDEVKAT 1070
Query: 898 AAERLRISMERIALLKAAR 916
AAE+L+ISMERIALLKAA+
Sbjct: 1071 AAEKLKISMERIALLKAAQ 1089
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4J8D3 | TPLAT_ARATH | No assigned EC number | 0.8280 | 0.9979 | 0.8401 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00020553001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1179 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 990 | |||
| PF07718 | 140 | Coatamer_beta_C: Coatomer beta C-terminal region; | 97.02 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.58 |
| >PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0027 Score=61.94 Aligned_cols=95 Identities=24% Similarity=0.314 Sum_probs=76.3
Q ss_pred ccCCceecccCCCCccEEEeeeeccCCCCeEEEEEEEecCCcccccceeeEEecceeeecccCchHHHHHhcccccCCce
Q 001962 589 KASPTAYTLTGSSDPCYVEAYHLADSSDGKITLHLKVLNLTELELNRVDIRVGLSGALYFMNGSPQAVRQLRNLVSQDPV 668 (990)
Q Consensus 589 k~pp~avtLSGSSDPCyVEAyHladP~~~RlTLHLKv~Nlte~eL~rvdvrVGL~GAL~fmDGs~QaVrqL~~L~sqdpv 668 (990)
+..-.-+.|||=|||+|+|||=. .|.+.|.|-+=+.|-|+.-|..+.++.--.|-|.+.|.-+ --+|...+-.
T Consensus 43 skL~kv~QLTGfsDPvYaEA~v~--v~q~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~-----~~tL~P~~~~ 115 (140)
T PF07718_consen 43 SKLNKVVQLTGFSDPVYAEAYVT--VHQYDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQ-----PITLAPHGFA 115 (140)
T ss_pred hhhccEEecccCCCCeEEEEEEE--EEeeeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCC-----ceeeCCCcEE
Confidence 34445689999999999999954 4677899999999999999999999999999999999764 3456667777
Q ss_pred eeeeEeeeecccccceeeeeee
Q 001962 669 ICSVTVGVSHFERCAFWVQVLY 690 (990)
Q Consensus 669 ~~svtvgVS~ferc~l~vQvLy 690 (990)
....++-||.=|-+-..-.|.|
T Consensus 116 ~i~~~iKVsStetGvIfG~I~Y 137 (140)
T PF07718_consen 116 RIKATIKVSSTETGVIFGNIVY 137 (140)
T ss_pred EEEEEEEEEeccCCEEEEEEEE
Confidence 7777888887776665555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 7e-12
Identities = 95/606 (15%), Positives = 177/606 (29%), Gaps = 155/606 (25%)
Query: 6 DNV--SKVAFESVGRLFQEFESKRMSRLAGDKLVDS--ENSLAIRSNWVSAMVNFVWKKR 61
D++ SK A RLF SK +++V E L I ++ + + ++
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSK------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 62 SALMARSLVLPIESFR------ATVFP--IVYSVKAVASGRVDVIRRLSKDSN----GVN 109
S + R VF V ++ R + L N GV
Sbjct: 106 SMMTRM-----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVL 159
Query: 110 GTQVDSNAEKLVGVSDV-----VTHLVPF------LASSLDPAVIFEVGINMLYLADVPG 158
G + K DV V + F L + P + E+ +LY D
Sbjct: 160 G------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 159 GKTEWASQSIIAILTLWDRQEFSSARESIVRAVVTNLH---LLDL-------HLQVSLFR 208
S +I + S + + R + + + LL L
Sbjct: 214 TSRSDHSSNI--------KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 209 -RLLLMVRNLRAESDRMHALACICRTALCVD-------------LFAK----------ES 244
++LL R + +D + A T + +D L K
Sbjct: 266 CKILLTTRF-KQVTDFLSAAT---TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 245 VRRGQKPLPGTDIASLFEDPRIR---------DDLNSVTSKSLFREELVASLVESCFQ-L 294
V P + IA D D L ++ SL L + F L
Sbjct: 322 VLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRL 378
Query: 295 SLPLPEQKNSGMESRVIGALAYGTGYGALNWTEPALEVVE------VCRPCVKWDCDGRT 348
S+ P ++ + + ++ + W + V V+ T
Sbjct: 379 SV-FPP--SAHIPTILLSLI----------WFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 349 YAI-DCYLKLLVRLCHIYDTRGGVKRVKDGASQDQILNETRLQNMQRQLVKDLHEVNTPR 407
+I YL+L V+L + L+ + + + D ++ P
Sbjct: 426 ISIPSIYLELKVKL-----------------ENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 408 MLARLIWAIAEHIDLEGLDPLLADDPEDPLNI--IISNIHKVLFNVDSSANTSNRLQDVQ 465
+ I H+ + L+ + I ++S + N LQ ++
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 466 AVLISAQRLGSRNPRAGQLLTKELEEFRNSTLADSVN-KHQCRLILQRIKYASSHPENKW 524
+ +P+ +L+ + +F + + K+ +L+ A +
Sbjct: 529 ---FYKPYICDNDPKYERLV-NAILDFLPKIEENLICSKYTD--LLRI---ALMAEDE-- 577
Query: 525 ACVNEA 530
A EA
Sbjct: 578 AIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00