Citrus Sinensis ID: 001977
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | 2.2.26 [Sep-21-2011] | |||||||
| O04716 | 1324 | DNA mismatch repair prote | yes | no | 0.969 | 0.722 | 0.623 | 0.0 | |
| P54276 | 1358 | DNA mismatch repair prote | yes | no | 0.791 | 0.575 | 0.347 | 1e-120 | |
| P52701 | 1360 | DNA mismatch repair prote | yes | no | 0.773 | 0.561 | 0.345 | 1e-116 | |
| Q9VUM0 | 1190 | Probable DNA mismatch rep | yes | no | 0.655 | 0.543 | 0.334 | 2e-91 | |
| O74502 | 1254 | DNA mismatch repair prote | yes | no | 0.759 | 0.598 | 0.292 | 2e-76 | |
| Q03834 | 1242 | DNA mismatch repair prote | yes | no | 0.638 | 0.507 | 0.289 | 1e-73 | |
| Q55GU9 | 1260 | DNA mismatch repair prote | yes | no | 0.610 | 0.478 | 0.284 | 1e-72 | |
| Q9SMV7 | 1109 | DNA mismatch repair prote | no | no | 0.466 | 0.414 | 0.330 | 2e-60 | |
| Q4P6I8 | 1154 | DNA mismatch repair prote | N/A | no | 0.602 | 0.515 | 0.252 | 2e-34 | |
| P20585 | 1137 | DNA mismatch repair prote | no | no | 0.589 | 0.511 | 0.228 | 3e-33 |
| >sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1209 bits (3129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1022 (62%), Positives = 767/1022 (75%), Gaps = 65/1022 (6%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNP----------- 49
MAP +RQ +GRSPLVN QRQITSFF KS S S SP+ S + P
Sbjct: 1 MAPSRRQISGRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPS 60
Query: 50 ------------NPNPNSNSNRTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAA 97
NPNP+SN SPSP P TPSP+QS KK LVIGQTPSPP S
Sbjct: 61 PSPSPPKKTPKLNPNPSSNLP-ARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQSV--- 116
Query: 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157
+YG++V+ K++RVYWPLDK WY+G V +DK KH+V+Y+DGE+E LDLGKEK EWV
Sbjct: 117 VITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
Query: 158 --QESVSLLKRLRR--DSFKKVVVE--DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDV 211
++S RL+R + +KVV + DD EM NVE++ D DSSD+DW KNVGKE
Sbjct: 177 VGEKSGDRFNRLKRGASALRKVVTDSDDDVEMGNVEED-KSDGDDSSDEDWGKNVGKEVC 235
Query: 212 -SEDEEVDLVDEQE-----------------NKVLR--GRKRKSS------GVKKSKSDG 245
SE+++V+LVDE E N+V + RKRK+S G KKSK+D
Sbjct: 236 ESEEDDVELVDENEMDEEELVEEKDEETSKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDT 295
Query: 246 NAVNADFKSPIIKPVKIFG-SDKLSNGF-DNPVMGDVSERFSAREADKFHFLGPDRRDAK 303
+ FK+ +++P K G +D++ G DN + GD RF AR+++KF FLG DRRDAK
Sbjct: 296 GTILKGFKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAK 355
Query: 304 RRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHV 363
RRRP D YDPRTLYLPPDF++ L+ GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHV
Sbjct: 356 RRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHV 415
Query: 364 GAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK 423
GAKELD+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE GSK
Sbjct: 416 GAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSK 475
Query: 424 DKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVAT 483
DKVVKRE+CAVVTKGTLT+GE+L NPDASYLMALTE +S + + + FG+C+VDVAT
Sbjct: 476 DKVVKREVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVAT 535
Query: 484 SRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLS 543
+IILGQ DD DCS L CLLSE+RPVEIIKPA +LS TER I+R TRNPLVN+LVPLS
Sbjct: 536 QKIILGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS 595
Query: 544 EFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQ 603
EFWD+E T+ E+ IY RI + + + + + GDG + LP +LSEL + +GS
Sbjct: 596 EFWDSEKTIYEVGIIYKRINCQP---SSAYSSEGKILGDGSSFLPKMLSELATEDKNGSL 652
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
LSALGG ++YL+++FLDE+LLRFAKFE LP F ++ +K +MVLDA ALENLE+FENS
Sbjct: 653 ALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENS 712
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
R+G SGTLYAQLN C+TA GKRLL+TWLARPLYN+ LI+ERQDAVA LRG N P++LEF
Sbjct: 713 RNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEF 772
Query: 724 RKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACS 783
RK+LSRLPDMERL+AR+F+S EA+GRN +KVVLYED AKKQ+QEFIS L GCE M +ACS
Sbjct: 773 RKSLSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACS 832
Query: 784 SLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYD 843
SL AIL++ SR+L H+LTPG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +YD
Sbjct: 833 SLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYD 892
Query: 844 SACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSS 903
ACK V+E E+SL KHLKEQRKLLGD SI YVT+GKD YLLEVPESL GSVP DYEL SS
Sbjct: 893 CACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSS 952
Query: 904 KKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAGLTL 963
KKG RYWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATA L +
Sbjct: 953 KKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDV 1012
Query: 964 IL 965
++
Sbjct: 1013 LI 1014
|
Involved in post-replicative DNA-mismatch repair. Arabidopsis thaliana (taxid: 3702) |
| >sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster GN=Msh6 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msh6 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q03834|MSH6_YEAST DNA mismatch repair protein MSH6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSH6 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9SMV7|MSH7_ARATH DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana GN=MSH7 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q4P6I8|MSH3_USTMA DNA mismatch repair protein MSH3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MSH3 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | ||||||
| 255548475 | 1306 | ATP binding protein, putative [Ricinus c | 0.973 | 0.735 | 0.699 | 0.0 | |
| 225437545 | 1297 | PREDICTED: DNA mismatch repair protein M | 0.957 | 0.728 | 0.683 | 0.0 | |
| 224128348 | 1288 | predicted protein [Populus trichocarpa] | 0.938 | 0.718 | 0.661 | 0.0 | |
| 297743972 | 1237 | unnamed protein product [Vitis vinifera] | 0.900 | 0.718 | 0.659 | 0.0 | |
| 356572787 | 1269 | PREDICTED: DNA mismatch repair protein M | 0.943 | 0.733 | 0.641 | 0.0 | |
| 147861780 | 1349 | hypothetical protein VITISV_032225 [Viti | 0.975 | 0.713 | 0.639 | 0.0 | |
| 15235223 | 1324 | DNA mismatch repair protein Msh6-1 [Arab | 0.969 | 0.722 | 0.623 | 0.0 | |
| 297814117 | 1326 | hypothetical protein ARALYDRAFT_912022 [ | 0.969 | 0.721 | 0.617 | 0.0 | |
| 334186287 | 1321 | DNA mismatch repair protein Msh6-1 [Arab | 0.966 | 0.722 | 0.620 | 0.0 | |
| 2104549 | 1362 | AGAA.3 [Arabidopsis thaliana] | 0.969 | 0.702 | 0.600 | 0.0 |
| >gi|255548475|ref|XP_002515294.1| ATP binding protein, putative [Ricinus communis] gi|223545774|gb|EEF47278.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1320 bits (3416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 692/989 (69%), Positives = 795/989 (80%), Gaps = 28/989 (2%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT 60
MAP ++ +NGRSPLVNPQRQITSFF K+ SPSPSP+ S + + S ++ +
Sbjct: 1 MAPSRKPSNGRSPLVNPQRQITSFFCKTTSPSPSPSPSPSPAS-TLSKGQTPKSNPNPNP 59
Query: 61 PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTP---AAAKSYGEDVLRKRIRVYWPLD 117
SP PTTPSP+QS KK LVIG+TP+P PS A S+G++V+ KR++VYWPLD
Sbjct: 60 KPSSPGPTTPSPVQSKTKKPLLVIGKTPTPSPSPSMPRVMANSFGKEVVEKRVKVYWPLD 119
Query: 118 KAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDS--FKKV 175
K WYEGCVKS+D++ KHLVQYDD E+E+LDLG EKIEWV+ESV+ KRLRR S FK
Sbjct: 120 KTWYEGCVKSYDEDSGKHLVQYDDFEEEVLDLGNEKIEWVEESVTKFKRLRRGSLAFKNT 179
Query: 176 VVEDDEEMENV----EDEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLVDEQENKVLRG- 230
V+ED EEM++V E+ D DSSD+DW KNV K D+SEDE+ DL DE E +G
Sbjct: 180 VIED-EEMKDVADIEEENACVDGDDSSDEDWAKNVDK-DISEDEDADLEDEVEEDSYKGA 237
Query: 231 ----RKRKSSGVKKSKSD----GNAVNADFKSPIIKPVKIFGSDKLSNGFDN--PVMGDV 280
RKRK G K S G+ K I+PVK G + NG N + D
Sbjct: 238 KSDSRKRKVYGAKASVKKKKSCGDVSEGAVKVSFIEPVKD-GGNGFCNGLGNGNASINDA 296
Query: 281 SERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSK 340
SERFS REA+K FLG +RRDAKR+RPGD YDPRTLYLPP F+++LS GQ+QWWEFKSK
Sbjct: 297 SERFSMREAEKMWFLGAERRDAKRKRPGDADYDPRTLYLPPSFVKSLSGGQRQWWEFKSK 356
Query: 341 HMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYR 400
HMDKV+FFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPER FSMNVEKL RKGYR
Sbjct: 357 HMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERIFSMNVEKLTRKGYR 416
Query: 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTE 460
VLV+EQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL+ANPDASYLMA+TE
Sbjct: 417 VLVIEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLTANPDASYLMAVTE 476
Query: 461 SNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLS 520
S Q+ Q+ + FGICV DVATSRIILGQ +DD +CS LC LLSELRPVEIIKPA LS
Sbjct: 477 SQQNLEGQNFEPTFGICVADVATSRIILGQFVDDSECSSLCRLLSELRPVEIIKPAKSLS 536
Query: 521 PETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRIT----AESLNKADSNVAN 576
ETER +LRHTRNPLVNDLVPLSEFWDAE TV E+K IY I+ + SLNK D + AN
Sbjct: 537 SETERLLLRHTRNPLVNDLVPLSEFWDAEKTVHEVKIIYKHISDQSASRSLNKEDKDTAN 596
Query: 577 SQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCS 636
Q +G +CLP IL EL++ GD+G LSALGGTL+YLK++FLDETLLRFAKFE LPCS
Sbjct: 597 LQFTEEGPSCLPEILLELVNKGDNGRLALSALGGTLYYLKQAFLDETLLRFAKFESLPCS 656
Query: 637 GFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPL 696
F D+A+KPYM+LDA ALENLE+FENSR+G SGTLYAQLNHCVTAFGKRLL+TWLARPL
Sbjct: 657 DFCDVAQKPYMILDAAALENLEIFENSRNGGLSGTLYAQLNHCVTAFGKRLLKTWLARPL 716
Query: 697 YNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVL 756
Y+ I +RQDAVAGLRGVNQP LEFRKALSRLPDMERL+AR+FASSEANGRN+NKV+L
Sbjct: 717 YHLRSIVDRQDAVAGLRGVNQPATLEFRKALSRLPDMERLIARIFASSEANGRNANKVIL 776
Query: 757 YEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKH 816
YEDAAKK LQEFISAL GCELM+QACSSL ILEN ESRQLHH+LTPGK P I SILKH
Sbjct: 777 YEDAAKKLLQEFISALRGCELMEQACSSLAVILENVESRQLHHLLTPGKSRPHIHSILKH 836
Query: 817 FKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVT 876
FK+AFDWVEANNSGR+IPH GVD++YDSAC+K++ IE+SLTKHLKEQ+K+LGD SI YVT
Sbjct: 837 FKEAFDWVEANNSGRVIPHEGVDIEYDSACEKLRVIESSLTKHLKEQQKILGDKSIMYVT 896
Query: 877 IGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSI 936
+GK+ YLLEVPE RGS+PRDYELRSSKKGF+RYWTP+IKKLLGELSQAESEKE ALK+I
Sbjct: 897 VGKEAYLLEVPEHFRGSIPRDYELRSSKKGFYRYWTPSIKKLLGELSQAESEKELALKNI 956
Query: 937 LQRLIGQFCEHHNKWRQMVAATAGLTLIL 965
LQRLI QFCEHH+KWRQ+ +ATA L +++
Sbjct: 957 LQRLIVQFCEHHDKWRQLNSATAELDVLI 985
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437545|ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224128348|ref|XP_002320307.1| predicted protein [Populus trichocarpa] gi|222861080|gb|EEE98622.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297743972|emb|CBI36942.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356572787|ref|XP_003554547.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|147861780|emb|CAN78918.1| hypothetical protein VITISV_032225 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15235223|ref|NP_192116.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] gi|6226648|sp|O04716.2|MSH6_ARATH RecName: Full=DNA mismatch repair protein MSH6; Short=AtMSH6; AltName: Full=MutS protein homolog 6 gi|3912921|gb|AAC78699.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana] gi|5763966|emb|CAB53337.1| mismatch repair protein msh6-1 [Arabidopsis thaliana] gi|7268591|emb|CAB80700.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana] gi|332656719|gb|AEE82119.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297814117|ref|XP_002874942.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp. lyrata] gi|297320779|gb|EFH51201.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|334186287|ref|NP_001190656.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] gi|332656720|gb|AEE82120.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|2104549|gb|AAB57798.1| AGAA.3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | ||||||
| TAIR|locus:2132233 | 1324 | MSH6 "AT4G02070" [Arabidopsis | 0.714 | 0.532 | 0.681 | 7.3e-280 | |
| MGI|MGI:1343961 | 1358 | Msh6 "mutS homolog 6 (E. coli) | 0.665 | 0.483 | 0.369 | 1.9e-108 | |
| RGD|2322311 | 1361 | Msh6 "mutS homolog 6 (E. coli) | 0.660 | 0.479 | 0.375 | 3.9e-108 | |
| UNIPROTKB|E1BWV7 | 1357 | MSH6 "Uncharacterized protein" | 0.668 | 0.486 | 0.361 | 3.1e-106 | |
| UNIPROTKB|E1BYJ2 | 1341 | MSH6 "Uncharacterized protein" | 0.668 | 0.492 | 0.361 | 3.1e-106 | |
| UNIPROTKB|F1PM27 | 1263 | MSH6 "Uncharacterized protein" | 0.588 | 0.460 | 0.363 | 1.4e-94 | |
| UNIPROTKB|J9P5H1 | 1279 | MSH6 "Uncharacterized protein" | 0.588 | 0.454 | 0.363 | 1.4e-94 | |
| UNIPROTKB|I3LUG7 | 1011 | LOC100624532 "Uncharacterized | 0.588 | 0.574 | 0.364 | 2.3e-94 | |
| UNIPROTKB|E1B9Q4 | 1360 | MSH6 "Uncharacterized protein" | 0.588 | 0.427 | 0.361 | 3.6e-94 | |
| UNIPROTKB|I3LHZ9 | 1334 | LOC100739477 "Uncharacterized | 0.588 | 0.435 | 0.364 | 4.2e-94 |
| TAIR|locus:2132233 MSH6 "AT4G02070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2496 (883.7 bits), Expect = 7.3e-280, Sum P(3) = 7.3e-280
Identities = 484/710 (68%), Positives = 572/710 (80%)
Query: 252 FKSPIIKPVKIFG-SDKLSNGF-DNPVMGDVSERFSAREADKFHFLGPDRRDAKRRRPGD 309
FK+ +++P K G +D++ G DN + GD RF AR+++KF FLG DRRDAKRRRP D
Sbjct: 302 FKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAKRRRPTD 361
Query: 310 VYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELD 369
YDPRTLYLPPDF++ L+ GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHVGAKELD
Sbjct: 362 ENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELD 421
Query: 370 LQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKR 429
+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE GSKDKVVKR
Sbjct: 422 IQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKR 481
Query: 430 EICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILG 489
E+CAVVTKGTLT+GE+L NPDASYLMALTE +S + + + FG+C+VDVAT +IILG
Sbjct: 482 EVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILG 541
Query: 490 QVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAE 549
Q RPVEIIKPA +LS TER I+R TRNPLVN+LVPLSEFWD+E
Sbjct: 542 QFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLSEFWDSE 601
Query: 550 TTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALG 609
T+ E+ IY RI + + S + GDG + LP +LSEL + +GS LSALG
Sbjct: 602 KTIYEVGIIYKRINCQPSSAYSSE---GKILGDGSSFLPKMLSELATEDKNGSLALSALG 658
Query: 610 GTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSS 669
G ++YL+++FLDE+LLRFAKFE LP F ++ +K +MVLDA ALENLE+FENSR+G S
Sbjct: 659 GAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYS 718
Query: 670 GTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSR 729
GTLYAQLN C+TA GKRLL+TWLARPLYN+ LI+ERQDAVA LRG N P++LEFRK+LSR
Sbjct: 719 GTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSR 778
Query: 730 LPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAIL 789
LPDMERL+AR+F+S EA+GRN +KVVLYED AKKQ+QEFIS L GCE M +ACSSL AIL
Sbjct: 779 LPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACSSLRAIL 838
Query: 790 ENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKV 849
++ SR+L H+LTPG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +YD ACK V
Sbjct: 839 KHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTV 898
Query: 850 KEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFR 909
+E E+SL KHLKEQRKLLGD SI YVT+GKD YLLEVPESL GSVP DYEL SSKKG R
Sbjct: 899 EEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSSKKGVSR 958
Query: 910 YWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
YWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATA
Sbjct: 959 YWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATA 1008
|
|
| MGI|MGI:1343961 Msh6 "mutS homolog 6 (E. coli)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|2322311 Msh6 "mutS homolog 6 (E. coli)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BWV7 MSH6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BYJ2 MSH6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PM27 MSH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P5H1 MSH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LUG7 LOC100624532 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1B9Q4 MSH6 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3LHZ9 LOC100739477 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04716 | MSH6_ARATH | No assigned EC number | 0.6232 | 0.9696 | 0.7228 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 987 | |||
| COG0249 | 843 | COG0249, MutS, Mismatch repair ATPase (MutS family | 3e-76 | |
| PRK05399 | 854 | PRK05399, PRK05399, DNA mismatch repair protein Mu | 9e-60 | |
| pfam05192 | 290 | pfam05192, MutS_III, MutS domain III | 5e-49 | |
| smart00533 | 308 | smart00533, MUTSd, DNA-binding domain of DNA misma | 5e-48 | |
| TIGR01070 | 840 | TIGR01070, mutS1, DNA mismatch repair protein MutS | 4e-42 | |
| pfam01624 | 113 | pfam01624, MutS_I, MutS domain I | 8e-40 | |
| pfam05190 | 92 | pfam05190, MutS_IV, MutS family domain IV | 6e-19 | |
| pfam05188 | 133 | pfam05188, MutS_II, MutS domain II | 3e-04 |
| >gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 3e-76
Identities = 163/635 (25%), Positives = 259/635 (40%), Gaps = 98/635 (15%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-QYMKGEQPHCGFPERNFSMN 390
+Q+ E K+++ D ++FF+MG FYELF DA + A+ LD+ +G P G P
Sbjct: 11 QQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYY 70
Query: 391 VEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANP 450
+ KL GY+V + EQ E P VV+R++ VVT GTLT+ LLS
Sbjct: 71 LAKLIELGYKVAICEQLEDP----------AEAKGVVERKVVRVVTPGTLTDEALLSDR- 119
Query: 451 DASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSEL--- 507
+ +YL AL + D G+ +D++T + + + LLSEL
Sbjct: 120 ENNYLAAL--------AIDRDGKVGLAFIDLSTGEFFVSEFEREK-------LLSELKRL 164
Query: 508 RPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESL 567
+P E++ ++LS L P S F D + + +
Sbjct: 165 QPKELLLSESLLSSTLAEIQKGLFVVRL-----PASFF-DEDDAEEILSEYF-------- 210
Query: 568 NKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETL-LR 626
G+ S LSA G L YLK + ++
Sbjct: 211 ---------------------GVRDLDGFGLISTPLALSAAGALLSYLKDTQKTFLPHIQ 249
Query: 627 FAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKR 686
+ L + YMVLDA NLE+F N R G+L+ L+ VT G R
Sbjct: 250 IIQRYDL----------EDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSR 299
Query: 687 LLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEA 746
LL+ WL +PL + I ER DAV L+ N + R+ L ++PD+ERLL+RL +
Sbjct: 300 LLKRWLLQPLLDKEEIEERLDAVEELKD-NPELREKLREMLKKVPDLERLLSRL-----S 353
Query: 747 NGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKG 806
GR S + +L +L++ + + E+ L +L +
Sbjct: 354 LGRASPRDLL-------RLRDSLEKIP--EIFKLL-------SSLKSESDLLLLLEDIES 397
Query: 807 LPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKL 866
L + +L+ + A + I G +++ D + + + K E+R+
Sbjct: 398 LDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERER 457
Query: 867 LGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAE 926
G S+ Y +EV +S VP DY R + K R+ TP +K+L +L AE
Sbjct: 458 TGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAE 517
Query: 927 SEKESALKSILQRLIGQFCEHHNKWRQMVAATAGL 961
+ + + L + H N+ + + A A L
Sbjct: 518 EKILALEYELFDELREKILAHINELQALAKALAEL 552
|
Length = 843 |
| >gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218489 pfam05192, MutS_III, MutS domain III | Back alignment and domain information |
|---|
| >gnl|CDD|214710 smart00533, MUTSd, DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
| >gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
| >gnl|CDD|216613 pfam01624, MutS_I, MutS domain I | Back alignment and domain information |
|---|
| >gnl|CDD|218487 pfam05190, MutS_IV, MutS family domain IV | Back alignment and domain information |
|---|
| >gnl|CDD|218486 pfam05188, MutS_II, MutS domain II | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| KOG0217 | 1125 | consensus Mismatch repair ATPase MSH6 (MutS family | 100.0 | |
| TIGR01070 | 840 | mutS1 DNA mismatch repair protein MutS. | 100.0 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 100.0 | |
| COG0249 | 843 | MutS Mismatch repair ATPase (MutS family) [DNA rep | 100.0 | |
| KOG0218 | 1070 | consensus Mismatch repair MSH3 [Replication, recom | 100.0 | |
| KOG0219 | 902 | consensus Mismatch repair ATPase MSH2 (MutS family | 100.0 | |
| smart00533 | 308 | MUTSd DNA-binding domain of DNA mismatch repair MU | 100.0 | |
| KOG0220 | 867 | consensus Mismatch repair ATPase MSH4 (MutS family | 100.0 | |
| KOG0221 | 849 | consensus Mismatch repair ATPase MSH5 (MutS family | 100.0 | |
| PF01624 | 113 | MutS_I: MutS domain I C-terminus.; InterPro: IPR00 | 99.97 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.95 | |
| PF05192 | 204 | MutS_III: MutS domain III C-terminus.; InterPro: I | 99.93 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.93 | |
| PF05190 | 92 | MutS_IV: MutS family domain IV C-terminus.; InterP | 99.52 | |
| COG1193 | 753 | Mismatch repair ATPase (MutS family) [DNA replicat | 99.52 | |
| PF05188 | 137 | MutS_II: MutS domain II; InterPro: IPR007860 Misma | 99.42 | |
| PF09465 | 55 | LBR_tudor: Lamin-B receptor of TUDOR domain; Inter | 99.16 | |
| smart00333 | 57 | TUDOR Tudor domain. Domain of unknown function pre | 97.44 | |
| KOG4675 | 273 | consensus Uncharacterized conserved protein, conta | 97.4 | |
| smart00743 | 61 | Agenet Tudor-like domain present in plant sequence | 97.26 | |
| cd04508 | 48 | TUDOR Tudor domains are found in many eukaryotic o | 97.24 | |
| PF09038 | 122 | 53-BP1_Tudor: Tumour suppressor p53-binding protei | 96.45 | |
| PF06003 | 264 | SMN: Survival motor neuron protein (SMN); InterPro | 93.34 | |
| KOG3064 | 303 | consensus RNA-binding nuclear protein (MAK16) cont | 88.35 | |
| PLN00104 | 450 | MYST -like histone acetyltransferase; Provisional | 87.26 | |
| PF11717 | 55 | Tudor-knot: RNA binding activity-knot of a chromod | 85.66 | |
| PF05641 | 68 | Agenet: Agenet domain; InterPro: IPR008395 This do | 84.91 | |
| PF15057 | 124 | DUF4537: Domain of unknown function (DUF4537) | 81.63 |
| >KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-132 Score=1161.75 Aligned_cols=818 Identities=39% Similarity=0.619 Sum_probs=660.8
Q ss_pred ccccCCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecCcceEEEEec--chhhhhhhcccccccc
Q 001977 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQE--SVSLLKRLRRDSFKKV 175 (987)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~~~--~~~~~~~~~~~~~~~~ 175 (987)
.-..+++.+| .||.+.|..+.....+ |-+++..-+..-+|+-+|... ......|++. +.+
T Consensus 8 ~~t~~~e~~~-----------~~~~~~v~~~~~~e~k----~l~~~t~k~~~~~e~~~~~~~~~r~~~~~rv~~---~e~ 69 (1125)
T KOG0217|consen 8 HMTFFEETPG-----------KLYRNSVGLKPKEEPK----SLRNGTLKIKNLKEKEEFKSGQPREVVSSRVKE---YEA 69 (1125)
T ss_pred ceeecccCcc-----------hhcccccccCCccchh----hhcCCCcCcCccchhhHhhccCccccccccccc---hhh
Confidence 4455677777 7999999988766665 656666555555566666531 1111222221 222
Q ss_pred ccCChhhhhccc-cccCCCCCCCcchhhh-cccCCC-CCCcc-cc---cc---hhhhhhhc--------ccccCCccCCC
Q 001977 176 VVEDDEEMENVE-DEISDDRSDSSDDDWN-KNVGKE-DVSED-EE---VD---LVDEQENK--------VLRGRKRKSSG 237 (987)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~-~~~~~-~~---~~---~~~~~~~~--------~~~~~~~~~~~ 237 (987)
+..+.+...... ...-...+++||+||+ |.+..- ++|++ +| +| ..+|+..+ .+.++.+++..
T Consensus 70 ~~~d~~~~~~~~~~~~k~~~~sDsd~d~g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~ 149 (1125)
T KOG0217|consen 70 VGDDADIVVESSSEKPKSGLDSDSDEDFGGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAES 149 (1125)
T ss_pred cCCCccceeeecccCCccccCCCcccccCcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhccc
Confidence 222222222222 2233456788889998 111111 22211 11 11 11222211 34455666644
Q ss_pred -----ccCCCCCCCCCCCCccccccCCccc-cCC-CCCCCCC-CCCCcccchhhhhhhccccccccCC-CCCccCCCCCC
Q 001977 238 -----VKKSKSDGNAVNADFKSPIIKPVKI-FGS-DKLSNGF-DNPVMGDVSERFSAREADKFHFLGP-DRRDAKRRRPG 308 (987)
Q Consensus 238 -----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fl~~-~~rD~~~r~p~ 308 (987)
+||+.+..++...+.......|.+- .+. ++.+.+. .....++..+|+.++.++++.||.. ++||+++|||+
T Consensus 150 v~k~~~kk~~~~~~~~~~~~~~~~~~p~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~ 229 (1125)
T KOG0217|consen 150 VSKGKSKKSPSDSGAVSMGHDLDFNDPMPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRG 229 (1125)
T ss_pred ccccccCCCCCCccccccccccccCCCCccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCC
Confidence 2222233334444555555666651 122 2223333 2233344478888899999888875 57999999999
Q ss_pred CCCCCCccCCCCcccccCCCHHHHHHHHHHhhCCCeEEEEeeCCeEEEechhHHHHHHhccceeccCCCCccccCcccHH
Q 001977 309 DVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFS 388 (987)
Q Consensus 309 dp~YDp~TL~iP~~~~~~~TP~~~Qyw~iK~~~~D~Vlffk~GkFYEly~~DA~i~~~~L~l~~~~~~~~~~GfPe~s~~ 388 (987)
||+|||+||||||++|+++||+++|||+||++|||||||||+|||||||++||.+++++|+|+||++++|||||||++|+
T Consensus 230 dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~ 309 (1125)
T KOG0217|consen 230 DPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFD 309 (1125)
T ss_pred CCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEeccCChHHHHHhhhhcCCCCCeeEEEEEEEEecCccccccccCCCCCCcEEEEEEecCCCCCCC
Q 001977 389 MNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQ 468 (987)
Q Consensus 389 ~~~~~Lv~~GykVavveQ~Et~~~~~~R~k~~g~k~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yLlaI~e~~~~~~~~ 468 (987)
.|+.+|+++|||||+|||+|||.++++|++..|+|+|||+||||+|+|+||+++..++. ++.+.|||||+|...+. .
T Consensus 310 ~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~-~~~akylmai~e~~~~~--~ 386 (1125)
T KOG0217|consen 310 YWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLT-SDLAKYLMAIKESEESY--S 386 (1125)
T ss_pred hHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhc-cHHHHHHHHHhhcCCCC--C
Confidence 99999999999999999999999999999999999999999999999999999977665 44678999999987642 2
Q ss_pred CCCCEEEEEEEeCCCCeEEEEEEcCcchHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccCh
Q 001977 469 STDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA 548 (987)
Q Consensus 469 ~~~~~~Gva~vD~sTG~f~l~qf~Dd~~~s~L~tlL~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~l~p~~~f~d~ 548 (987)
.+...||+|++|++||+|+++||+||.+|+.|+|+|+|++|+|+|.+.++++..|..+++....+..+..+.|..+||+.
T Consensus 387 ~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwds 466 (1125)
T KOG0217|consen 387 TGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDS 466 (1125)
T ss_pred cCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcch
Confidence 46788999999999999999999999999999999999999999999999999888777766666667777888899999
Q ss_pred hhhHHHH--HHHHhhhccccccccccccccccccCCCCCCcchhhhhhhccCCCchHHHHHHHHHHHHHHHhcchhhhhc
Q 001977 549 ETTVLEI--KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626 (987)
Q Consensus 549 ~~~~~~l--~~~~~~~~~~~~~k~d~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~lal~AlgalL~YL~~~~ld~~ll~ 626 (987)
+++..++ ..||... |...+|.++..- ..+++++++|||++++||+++++|+.|++
T Consensus 467 ek~~~eii~~dy~~~~--------------------g~e~~~sil~~p---~~~~~la~safg~~~~Ylk~~~id~~lls 523 (1125)
T KOG0217|consen 467 EKTGREIISEDYFESL--------------------GLEDSPSILKSP---NTDKELALSAFGGLFYYLKKLLIDEELLS 523 (1125)
T ss_pred hhHHHHHhhhhhhhcc--------------------cccCchhhccCC---CccchhhHHHHHHHHHHHHHHhhHHHHhh
Confidence 9998765 2444310 123455554332 24568999999999999999999999999
Q ss_pred ccccccccCCCccccCCCCeeecCHHHHHhccCcccCCCCCCcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHHHHHH
Q 001977 627 FAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706 (987)
Q Consensus 627 ~~~f~~~~~~~~~~~~~~~~M~LD~~TL~nLEI~~n~~~g~~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I~~Rl 706 (987)
+++|..|+... ...|+||++||+|||||.|.++|+.+||||.++|+|.||||||||++||++||+|.+.|++||
T Consensus 524 m~n~~ey~~~~------~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~ 597 (1125)
T KOG0217|consen 524 MKNFEEYDSLD------QSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQ 597 (1125)
T ss_pred hhhhhhcchhc------ccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHH
Confidence 99999886322 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHhcCCCCCHHHHHHHHhcCccccCcCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001977 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786 (987)
Q Consensus 707 daVe~L~~~n~~l~~~lr~~Lk~lpDLERll~Ri~~~~~~~~r~~~~~ilye~~~~~~L~~~~~~L~~~~~i~~~~~~l~ 786 (987)
|+|+.|.. ++..+..+...|+++||+||+|.|||.++.. +++++.+|+++|.+|+.+...+..+.
T Consensus 598 dav~~l~~-~~~~~~~~~e~l~klPDlERlL~Rih~~~~~--------------~~k~i~~f~rvLegfk~~~~~~~~~~ 662 (1125)
T KOG0217|consen 598 DAVDSLGK-APMDRTKVGETLKKLPDLERLLVRIHNGGEK--------------NKKKIADFIRVLEGFKEINKLLGSLI 662 (1125)
T ss_pred HHHHHHhc-CchhHHHHHHHHhhCCcHHHHHHHHHhcCcc--------------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 6678889999999999999999999976532 25789999999999999998887766
Q ss_pred HHhhhc-ChHHHHHhhcCCCCchhHHHHHHHHHhhcchhhhcCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 787 AILENT-ESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK 865 (987)
Q Consensus 787 ~~l~~~-~s~lL~~l~~~~~~lp~l~~ll~~i~~~iD~~~a~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~l~~~~k 865 (987)
+.+... ...+|..++ .++|++..-++.+..+||+..|.++|.|+|..|++.|||++.+.+++++++|..+|+++++
T Consensus 663 ~v~~~~~~~~~is~~~---~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk 739 (1125)
T KOG0217|consen 663 NVLKEGEGLRLISELL---ESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRK 739 (1125)
T ss_pred HHHHhhHHHHHHHHHh---cCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 554322 223333333 3589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCeeEEEEcCeeEEEEecccccCCCCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 866 LLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFC 945 (987)
Q Consensus 866 ~l~~~~iky~~~~k~gY~IeVp~~~~~kvP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~L~~~~~ 945 (987)
.++|++|.|+++++..|++|||.+...++|.+|+..+++||..||+||++.+|..++.++++++.....++.++++.+|.
T Consensus 740 ~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~ 819 (1125)
T KOG0217|consen 740 RLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFD 819 (1125)
T ss_pred hcCCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987777777999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhhhhcccCCceeccc
Q 001977 946 EHHNKWRQMVAATAGLTLILLDGSLLHAFLILQSNSCSSEM 986 (987)
Q Consensus 946 ~~~~~l~~~~~~iAeLD~L~Sla~l~kA~~A~~~~yvRP~i 986 (987)
+|+..|++++.++|.||||+|+|.. .-+...++|||+|
T Consensus 820 ~~~~~w~~tv~~~a~iD~l~sla~~---s~~~~~~~Crp~i 857 (1125)
T KOG0217|consen 820 EHYIIWQATVKALASIDCLLSLAET---SKGLGGPMCRPEI 857 (1125)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh---hccCCCCccccee
Confidence 9999999999999999999998443 3356788999987
|
|
| >TIGR01070 mutS1 DNA mismatch repair protein MutS | Back alignment and domain information |
|---|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
| >COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
| >KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01624 MutS_I: MutS domain I C-terminus | Back alignment and domain information |
|---|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >PF05192 MutS_III: MutS domain III C-terminus | Back alignment and domain information |
|---|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
| >PF05190 MutS_IV: MutS family domain IV C-terminus | Back alignment and domain information |
|---|
| >COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome | Back alignment and domain information |
|---|
| >PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane | Back alignment and domain information |
|---|
| >smart00333 TUDOR Tudor domain | Back alignment and domain information |
|---|
| >KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] | Back alignment and domain information |
|---|
| >smart00743 Agenet Tudor-like domain present in plant sequences | Back alignment and domain information |
|---|
| >cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains | Back alignment and domain information |
|---|
| >PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix | Back alignment and domain information |
|---|
| >PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins | Back alignment and domain information |
|---|
| >KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN00104 MYST -like histone acetyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F | Back alignment and domain information |
|---|
| >PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] | Back alignment and domain information |
|---|
| >PF15057 DUF4537: Domain of unknown function (DUF4537) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 987 | ||||
| 2o8b_B | 1022 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 1e-111 | ||
| 3thw_B | 918 | Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo | 3e-31 | ||
| 1ewq_A | 765 | Crystal Structure Taq Muts Complexed With A Heterod | 3e-11 | ||
| 1ewq_A | 765 | Crystal Structure Taq Muts Complexed With A Heterod | 6e-07 | ||
| 1fw6_A | 768 | Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com | 3e-11 | ||
| 1fw6_A | 768 | Crystal Structure Of A Taq Muts-Dna-Adp Ternary Com | 6e-07 | ||
| 1nne_A | 765 | Crystal Structure Of The Muts-adpbef3-dna Complex L | 5e-11 | ||
| 1nne_A | 765 | Crystal Structure Of The Muts-adpbef3-dna Complex L | 2e-07 | ||
| 1ng9_A | 800 | E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt | 2e-09 | ||
| 1ng9_A | 800 | E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt | 2e-08 | ||
| 1oh5_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 2e-09 | ||
| 1oh5_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 3e-08 | ||
| 3k0s_A | 799 | Crystal Structure Of E.Coli Dna Mismatch Repair Pro | 2e-09 | ||
| 3k0s_A | 799 | Crystal Structure Of E.Coli Dna Mismatch Repair Pro | 3e-08 | ||
| 1wbd_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 4e-09 | ||
| 1wbd_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 3e-08 | ||
| 1wb9_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 8e-09 | ||
| 1wb9_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 3e-08 | ||
| 1e3m_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 8e-09 | ||
| 1e3m_A | 800 | The Crystal Structure Of E. Coli Muts Binding To Dn | 2e-07 | ||
| 1wbb_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 8e-09 | ||
| 1wbb_A | 800 | Crystal Structure Of E. Coli Dna Mismatch Repair En | 3e-08 | ||
| 1ewr_A | 649 | Crystal Structure Of Taq Muts Length = 649 | 6e-07 | ||
| 2o8e_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, | 3e-06 | ||
| 2o8b_A | 934 | Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M | 3e-06 |
| >pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022 | Back alignment and structure |
|
| >pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918 | Back alignment and structure |
| >pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 | Back alignment and structure |
| >pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna At 2.2 A Resolution Length = 765 | Back alignment and structure |
| >pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 | Back alignment and structure |
| >pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex Length = 768 | Back alignment and structure |
| >pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765 | Back alignment and structure |
| >pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765 | Back alignment and structure |
| >pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 | Back alignment and structure |
| >pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800 | Back alignment and structure |
| >pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800 | Back alignment and structure |
| >pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800 | Back alignment and structure |
| >pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799 | Back alignment and structure |
| >pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799 | Back alignment and structure |
| >pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
| >pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
| >pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
| >pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
| >pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 | Back alignment and structure |
| >pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A G:t Mismatch Length = 800 | Back alignment and structure |
| >pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
| >pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800 | Back alignment and structure |
| >pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts Length = 649 | Back alignment and structure |
| >pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934 | Back alignment and structure |
| >pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022 | Back alignment and structure |
|---|
Score = 626 bits (1617), Expect = 0.0
Identities = 244/710 (34%), Positives = 368/710 (51%), Gaps = 34/710 (4%)
Query: 278 GDVSERFSAREADKFHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWE 336
GD S R + + +L + RRD RRRP +D TLY+P DFL + + G ++WW+
Sbjct: 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQ 77
Query: 337 FKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLAR 396
KS++ D VI +K+GKFYEL+ MDA +G EL L +MKG H GFPE F + L +
Sbjct: 78 IKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQ 137
Query: 397 KGYRVLVVEQTETPEQLELRRKEKGS---KDKVVKREICAVVTKGTLTEGELLSANPDAS 453
KGY+V VEQTETPE +E R ++ D+VV+REIC ++TKGT T L + +
Sbjct: 138 KGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSE-N 196
Query: 454 YLMAL-TESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEI 512
Y L + + S R +G+C VD + + +GQ DD CS L++ PV++
Sbjct: 197 YSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQV 256
Query: 513 IKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADS 572
+ LS ET+ + L L+P S+FWDA T+ + E + S
Sbjct: 257 LFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLE------EEYFREKLS 310
Query: 573 NVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFEL 632
+ S ++ G+ LSALGG +FYLKK +D+ LL A FE
Sbjct: 311 DGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEE 370
Query: 633 LPCSGFGDMAKKP----------YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
++ MVLDA L NLE+F N +G + GTL +++ C T
Sbjct: 371 YIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTP 430
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFA 742
FGKRLL+ WL PL N I +R DA+ L E + L +LPD+ERLL+++
Sbjct: 431 FGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKLPDLERLLSKIHN 489
Query: 743 SSEA---NGRNSNKVVLYEDAA--KKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797
++ ++YE+ KK++ +F+SAL G ++M + + + + +S+ L
Sbjct: 490 VGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKIL 549
Query: 798 HHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEI 852
+++ P P + L + AFD +A +G I P G D DYD A ++E
Sbjct: 550 KQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIREN 609
Query: 853 EASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYW 911
E SL ++L++QR +G +I Y IG++ Y LE+PE+ ++P +YEL+S+KKG RYW
Sbjct: 610 EQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYW 669
Query: 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAGL 961
T I+K L L AE ++ +LK ++RL F +++ W+ V A L
Sbjct: 670 TKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVL 719
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918 | Back alignment and structure |
|---|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934 | Back alignment and structure |
|---|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800 | Back alignment and structure |
|---|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 100.0 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 100.0 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 100.0 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 100.0 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 100.0 | |
| 2dig_A | 68 | Lamin-B receptor; tudor domain, integral nuclear e | 97.37 | |
| 2l8d_A | 66 | Lamin-B receptor; DNA binding protein; NMR {Gallus | 97.34 | |
| 2g3r_A | 123 | Tumor suppressor P53-binding protein 1; tandem tud | 97.26 | |
| 3p8d_A | 67 | Medulloblastoma antigen MU-MB-50.72; tudor domain, | 97.18 | |
| 2equ_A | 74 | PHD finger protein 20-like 1; tudor domain, struct | 97.15 | |
| 1mhn_A | 59 | SurviVal motor neuron protein; SMN, SMA, spinal mu | 97.08 | |
| 4a4f_A | 64 | SurviVal of motor neuron-related-splicing factor; | 96.98 | |
| 3s6w_A | 54 | Tudor domain-containing protein 3; methylated argi | 96.96 | |
| 3qii_A | 85 | PHD finger protein 20; tudor domain, structural ge | 96.95 | |
| 2eqj_A | 66 | Metal-response element-binding transcription facto | 96.73 | |
| 2m0o_A | 79 | PHD finger protein 1; tudor domain, H3K36ME3 bindi | 96.62 | |
| 1g5v_A | 88 | SurviVal motor neuron protein 1; mRNA processing, | 96.6 | |
| 2ldm_A | 81 | Uncharacterized protein; PHF20, tudor domain, epig | 95.59 | |
| 1ssf_A | 156 | Transformation related protein 53 binding protein | 96.47 | |
| 2d9t_A | 78 | Tudor domain-containing protein 3; structural geno | 96.26 | |
| 3pnw_C | 77 | Tudor domain-containing protein 3; FAB, structural | 96.02 | |
| 4hcz_A | 58 | PHD finger protein 1; protein-peptide complex, tud | 95.22 | |
| 2xk0_A | 69 | Polycomb protein PCL; transcription, aromatic CAGE | 94.36 | |
| 3fdr_A | 94 | Tudor and KH domain-containing protein; TDRD2, str | 94.36 | |
| 2eqk_A | 85 | Tudor domain-containing protein 4; structural geno | 94.32 | |
| 2diq_A | 110 | Tudor and KH domain-containing protein; tudor doma | 92.95 | |
| 2e5q_A | 63 | PHD finger protein 19; tudor domain, isoform B, st | 91.25 | |
| 2e5p_A | 68 | Protein PHF1, PHD finger protein 1; tudor domain, | 90.98 | |
| 2wac_A | 218 | CG7008-PA; unknown function, tudor, beta-barrel, n | 88.7 | |
| 3h8z_A | 128 | FragIle X mental retardation syndrome-related Pro; | 86.92 | |
| 3ntk_A | 169 | Maternal protein tudor; tudor domain, OB-fold, GER | 86.59 | |
| 1wgs_A | 133 | MYST histone acetyltransferase 1; tudor domain, MY | 86.12 | |
| 4b9x_A | 226 | TDRD1, tudor domain-containing protein 1; replicat | 85.28 | |
| 3dlm_A | 213 | Histone-lysine N-methyltransferase setdb1; setdb1_ | 83.09 | |
| 2ro0_A | 92 | Histone acetyltransferase ESA1; HAT, chromodomain, | 82.3 | |
| 2hqx_A | 246 | P100 CO-activator tudor domain; human P100 tudor d | 80.47 |
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-118 Score=1130.20 Aligned_cols=685 Identities=36% Similarity=0.620 Sum_probs=563.7
Q ss_pred ccchhhhhhhccccccccCC-CCCccCCCCCCCCCCCCccCCCCcccccCCCHHHHHHHHHHhhCCCeEEEEeeCCeEEE
Q 001977 278 GDVSERFSAREADKFHFLGP-DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYEL 356 (987)
Q Consensus 278 ~~~~~~~~~~~~~~~~fl~~-~~rD~~~r~p~dp~YDp~TL~iP~~~~~~~TP~~~Qyw~iK~~~~D~Vlffk~GkFYEl 356 (987)
|+..++++.|.|++|+||++ +|||++||||+||+|||||||||+++|+++||||||||+||++|||+|||||||+||||
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYEl 97 (1022)
T 2o8b_B 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL 97 (1022)
T ss_dssp ------CCSCGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEE
T ss_pred CCccccccccccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEE
Confidence 56778889999999999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHHHHhccceeccCCCCccccCcccHHHHHHHHHHcCCeEEEEeccCChHHHHHhhhhcC---CCCCeeEEEEEE
Q 001977 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVVKREICA 433 (987)
Q Consensus 357 y~~DA~i~~~~L~l~~~~~~~~~~GfPe~s~~~~~~~Lv~~GykVavveQ~Et~~~~~~R~k~~g---~k~kvv~Rev~~ 433 (987)
|++||+++|++|||++|+|++||||||+|+++.|+++||++|||||||||+|+|.+++.|.+.++ +++++|+||||+
T Consensus 98 f~~DA~~~a~~L~i~lt~~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~r 177 (1022)
T 2o8b_B 98 YHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 177 (1022)
T ss_dssp EHHHHHHHHHHHCCCCCSSSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEE
T ss_pred ehhhHHHHHHhcCeEEecCCCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999998888877543 446899999999
Q ss_pred EEecCccccccc---cCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEEeCCCCeEEEEEEcCcchHHHHHHHHHhcCCc
Q 001977 434 VVTKGTLTEGEL---LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPV 510 (987)
Q Consensus 434 V~TpGTl~d~~~---l~~~~~~~yLlaI~e~~~~~~~~~~~~~~Gva~vD~sTG~f~l~qf~Dd~~~s~L~tlL~~~~P~ 510 (987)
||||||++++.+ +. ...++||+||++.... ..+....|||||+|++||+|++++|.|+..+++|.++|.+++|+
T Consensus 178 vvTpGT~~d~~~~~~l~-~~~~n~l~ai~~~~~~--~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~ 254 (1022)
T 2o8b_B 178 IITKGTQTYSVLEGDPS-ENYSKYLLSLKEKEED--SSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 254 (1022)
T ss_dssp EECTTSCCCCTTSCCCS-CSSCCEEEEEEEEECS--CC-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEE
T ss_pred EECCCeeeccccccccc-CCCCcEEEEEEEcccc--ccCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCc
Confidence 999999999874 43 3478999999974211 01123579999999999999999999998899999999999999
Q ss_pred EEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHH--HHHhhhccccccccccccccccccCCCCCCcc
Q 001977 511 EIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK--NIYNRITAESLNKADSNVANSQAEGDGLTCLP 588 (987)
Q Consensus 511 EIl~~~~~ls~~t~~~l~~~~~~~~~~~l~p~~~f~d~~~~~~~l~--~~~~~~~~~~~~k~d~~~~~~~~~~~~~~~~p 588 (987)
|||++.+.++..+.+++.......+...+.+...||+...+...+. .+|..... ......||
T Consensus 255 Eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~----------------~~~~~~~~ 318 (1022)
T 2o8b_B 255 QVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLS----------------DGIGVMLP 318 (1022)
T ss_dssp EEEEETTTCCHHHHHHHTTTTTTSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSC----------------CCC-CCCC
T ss_pred EEEecCCccchHHHHHHHhhhhhhhhhhcccchhhcchhhHHhhhhhhhhcccccc----------------cccchhhH
Confidence 9999988777766665543322222222335567898777665443 34432110 00013567
Q ss_pred hhhhhhhcc----C----CCchHHHHHHHHHHHHHHHhcchhhhhcccccccccCCCc----------cccCCCCeeecC
Q 001977 589 GILSELIST----G----DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF----------GDMAKKPYMVLD 650 (987)
Q Consensus 589 ~~l~~l~~~----~----~~~~lal~AlgalL~YL~~~~ld~~ll~~~~f~~~~~~~~----------~~~~~~~~M~LD 650 (987)
..+..+... + ....++++|+|+||+||+.++++..++..++|..|..... ..+...++|+||
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD 398 (1022)
T 2o8b_B 319 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLD 398 (1022)
T ss_dssp HHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCC
T ss_pred HHHHHhhcchhhcccccccccHHHHHHHHHHHHHHHHhCcchhhhccccccccccccccccccccccccccCCCCeEEeC
Confidence 666544311 1 1346789999999999999988776666666654421100 113567899999
Q ss_pred HHHHHhccCcccCCCCCCcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCC
Q 001977 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (987)
Q Consensus 651 ~~TL~nLEI~~n~~~g~~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I~~RldaVe~L~~~n~~l~~~lr~~Lk~l 730 (987)
++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|++|||+|++|++ +..++..++..|+++
T Consensus 399 ~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~-~~~~~~~l~~~L~~i 477 (1022)
T 2o8b_B 399 AVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKL 477 (1022)
T ss_dssp HHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCccCCCCCCCCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHhcC
Confidence 9999999999998889999999999999999999999999999999999999999999999997 678899999999999
Q ss_pred CCHHHHHHHHhcCcccc---CcCCcchhhhHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcChHHHHHhhcCC-
Q 001977 731 PDMERLLARLFASSEAN---GRNSNKVVLYED--AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG- 804 (987)
Q Consensus 731 pDLERll~Ri~~~~~~~---~r~~~~~ilye~--~~~~~L~~~~~~L~~~~~i~~~~~~l~~~l~~~~s~lL~~l~~~~- 804 (987)
|||||+++||+.++.+. .+...++++|++ .+++++.+|+.++.++..+..+...+........+++|..+....
T Consensus 478 ~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~ 557 (1022)
T 2o8b_B 478 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQT 557 (1022)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTT
T ss_pred ccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhc
Confidence 99999999998632110 122345566665 367788888888766655544433333223345678888886422
Q ss_pred ----CCchhHHHHHHHHHhhcchhhhcCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEcCe
Q 001977 805 ----KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880 (987)
Q Consensus 805 ----~~lp~l~~ll~~i~~~iD~~~a~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~l~~~~k~l~~~~iky~~~~k~ 880 (987)
..++++.++++.|..+||...+.+.|.+++++|++++||++|+.+++++++|+++++++++.+++++++|++++++
T Consensus 558 ~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 637 (1022)
T 2o8b_B 558 KNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN 637 (1022)
T ss_dssp TSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGG
T ss_pred cccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 4678899999999999998766667888889999999999999999999999999999999999988999999999
Q ss_pred eEEEEecccccCC-CCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 881 LYLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959 (987)
Q Consensus 881 gY~IeVp~~~~~k-vP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~L~~~~~~~~~~l~~~~~~iA 959 (987)
+|+|+|+.+...+ +|++|++.++++|.+||+||++.+++.++..+++++...+..++.++++.+.+++..|..+++++|
T Consensus 638 ~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 638 RYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp CCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred eEEEEEehhhhcccCCCceEEeeeccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccchhhhhhcc--cCCceecccC
Q 001977 960 GLTLILLDGSLLHAFLIL--QSNSCSSEMN 987 (987)
Q Consensus 960 eLD~L~Sla~l~kA~~A~--~~~yvRP~in 987 (987)
+||||+|+ |.+|. ..+||||+|+
T Consensus 718 ~lD~l~s~-----A~~a~~~~~~~~~P~~~ 742 (1022)
T 2o8b_B 718 VLDVLLCL-----ANYSRGGDGPMCRPVIL 742 (1022)
T ss_dssp HHHHHHHH-----HHHTTCSSSCEECCEEC
T ss_pred HHHHHHhH-----HHHHhhccCCccCCccc
Confidence 99999998 77787 8999999873
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
| >2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} | Back alignment and structure |
|---|
| >2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A | Back alignment and structure |
|---|
| >3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* | Back alignment and structure |
|---|
| >4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* | Back alignment and structure |
|---|
| >3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* | Back alignment and structure |
|---|
| >3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 | Back alignment and structure |
|---|
| >2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
| >4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
| >2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 | Back alignment and structure |
|---|
| >2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* | Back alignment and structure |
|---|
| >3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* | Back alignment and structure |
|---|
| >1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 | Back alignment and structure |
|---|
| >4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} | Back alignment and structure |
|---|
| >3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} | Back alignment and structure |
|---|
| >2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 987 | ||||
| d1wb9a1 | 297 | a.113.1.1 (A:270-566) DNA repair protein MutS, dom | 1e-35 | |
| d1ewqa1 | 275 | a.113.1.1 (A:267-541) DNA repair protein MutS, dom | 4e-30 | |
| d1wb9a4 | 115 | d.75.2.1 (A:2-116) DNA repair protein MutS, domain | 5e-28 | |
| d1ewqa4 | 120 | d.75.2.1 (A:1-120) DNA repair protein MutS, domain | 6e-27 | |
| d1wb9a3 | 153 | c.55.6.1 (A:117-269) DNA repair protein MutS, doma | 1e-04 |
| >d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Escherichia coli [TaxId: 562]
Score = 135 bits (340), Expect = 1e-35
Identities = 67/312 (21%), Positives = 117/312 (37%), Gaps = 29/312 (9%)
Query: 650 DAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAV 709
DA NLE+ +N G + TL + L+ VT G R+L+ WL P+ ++ ++ ERQ +
Sbjct: 1 DAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTI 59
Query: 710 AGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFI 769
L Q F + L ++ D+ER+LARL A A R+
Sbjct: 60 GAL----QDFTAGLQPVLRQVGDLERILARL-ALRTARPRD------------------- 95
Query: 770 SALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNS 829
L Q L A LE +S + + + +L+ V +
Sbjct: 96 --LARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDG 153
Query: 830 GRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES 889
G I G + + D L + +R+ G ++ Y +++
Sbjct: 154 GVIAS--GYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRG 211
Query: 890 LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
P +Y R + K RY P +K+ ++ ++ + + K + + L H
Sbjct: 212 QSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLE 271
Query: 950 KWRQMVAATAGL 961
+Q +A A L
Sbjct: 272 ALQQSASALAEL 283
|
| >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} Length = 275 | Back information, alignment and structure |
|---|
| >d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
| >d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} Length = 120 | Back information, alignment and structure |
|---|
| >d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| d1wb9a1 | 297 | DNA repair protein MutS, domain III {Escherichia c | 100.0 | |
| d1ewqa1 | 275 | DNA repair protein MutS, domain III {Thermus aquat | 100.0 | |
| d1wb9a4 | 115 | DNA repair protein MutS, domain I {Escherichia col | 100.0 | |
| d1ewqa4 | 120 | DNA repair protein MutS, domain I {Thermus aquatic | 100.0 | |
| d1ewqa3 | 146 | DNA repair protein MutS, domain II {Thermus aquati | 99.57 | |
| d1wb9a3 | 153 | DNA repair protein MutS, domain II {Escherichia co | 99.54 | |
| d2d9ta1 | 60 | Tudor domain-containing protein 3, TDRD3 {Mouse (M | 97.1 | |
| d2diga1 | 55 | Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 | 97.07 | |
| d1mhna_ | 59 | Survival motor neuron protein 1, smn {Human (Homo | 96.76 | |
| d2g3ra1 | 53 | p53-binding protein 1, 53BP1 {Human (Homo sapiens) | 95.32 | |
| d2diqa1 | 97 | Tudor and KH domain-containing protein TDRKH {Huma | 94.14 | |
| d2hqxa1 | 90 | P100 co-activator, SND1 {Human (Homo sapiens) [Tax | 92.49 | |
| d1wgsa_ | 133 | Probable histone acetyltransferase MYST1 {Mouse (M | 85.44 |
| >d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA repair protein MutS, domain III superfamily: DNA repair protein MutS, domain III family: DNA repair protein MutS, domain III domain: DNA repair protein MutS, domain III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-41 Score=369.10 Aligned_cols=295 Identities=20% Similarity=0.285 Sum_probs=244.4
Q ss_pred CHHHHHhccCcccCCCCCCcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHhcCC
Q 001977 650 DAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSR 729 (987)
Q Consensus 650 D~~TL~nLEI~~n~~~g~~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I~~RldaVe~L~~~n~~l~~~lr~~Lk~ 729 (987)
|++|++||||+.|. .|+.+||||++||+|+|+||+|+||+||++|++|+++|++|||+|++|.. ....++..|++
T Consensus 1 D~~T~~nLEl~~~~-~g~~~~SL~~~ln~c~T~~GkRlLr~wLl~Pl~d~~~I~~R~d~Ve~l~~----~~~~l~~~L~~ 75 (297)
T d1wb9a1 1 DAATRRNLEITQNL-AGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD----FTAGLQPVLRQ 75 (297)
T ss_dssp CHHHHHHTTSSSCT-TSCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG----GHHHHHHHHHT
T ss_pred CHhHHHHhCcCcCC-CCCCCCcHHHHHcCCCCcHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHH----hHHHHHHHHhc
Confidence 89999999999988 46788999999999999999999999999999999999999999999975 36678999999
Q ss_pred CCCHHHHHHHHhcCccccCcCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcChHHHHHhhcCCCCchh
Q 001977 730 LPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPA 809 (987)
Q Consensus 730 lpDLERll~Ri~~~~~~~~r~~~~~ilye~~~~~~L~~~~~~L~~~~~i~~~~~~l~~~l~~~~s~lL~~l~~~~~~lp~ 809 (987)
+||++|++.|+..+.. .+.++..+...+..+..+...+..+ ..............+..
T Consensus 76 l~Dierl~~k~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 133 (297)
T d1wb9a1 76 VGDLERILARLALRTA---------------RPRDLARMRHAFQQLPELRAQLETV-------DSAPVQALREKMGEFAE 133 (297)
T ss_dssp TCSHHHHHHHHHHTCC---------------CHHHHHHHHHHHTTHHHHHHHHHSC-------CCHHHHHHHHHHCCCHH
T ss_pred cchHHHHHHHHHHHhh---------------chhHHHHHHHHHHhhhhHHHHhhhc-------cchhhhhhhccccchhh
Confidence 9999999999986531 1356777777777776665433221 11111111111112333
Q ss_pred HHHHHHHHHhhcchhh--hcCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEcCeeEEEEec
Q 001977 810 IVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVP 887 (987)
Q Consensus 810 l~~ll~~i~~~iD~~~--a~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~l~~~~k~l~~~~iky~~~~k~gY~IeVp 887 (987)
+.+.|...|+... ....+.++ ++|++++||++++.+++++..++++..+++..++.+.+++......||+++++
T Consensus 134 ---~~~~i~~~i~~~~~~~~~~~~~i-~~g~~~~ld~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 209 (297)
T d1wb9a1 134 ---LRDLLERAIIDTPPVLVRDGGVI-ASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQIS 209 (297)
T ss_dssp ---HHHHHHHHBCSSCCSCSTTCCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEETTTEEEEEEE
T ss_pred ---HHHHHHHHHhccChhhhccCCee-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeeccceeeeec
Confidence 4444555665321 12334454 99999999999999999999999999999888888888888788899999999
Q ss_pred ccccCCCCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 001977 888 ESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAGLTLILLD 967 (987)
Q Consensus 888 ~~~~~kvP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~L~~~~~~~~~~l~~~~~~iAeLD~L~Sl 967 (987)
......+|.+|+..+.+++.++|+|+++++|++++.++++++.+++..++++|+..|.+|.+.|..++++||+||||+||
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~t~~l~~l~~~l~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~~~~iaeLD~l~S~ 289 (297)
T d1wb9a1 210 RGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNL 289 (297)
T ss_dssp HHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcccCC
Q 001977 968 GSLLHAFLILQSN 980 (987)
Q Consensus 968 a~l~kA~~A~~~~ 980 (987)
|.+|.++|
T Consensus 290 -----A~~A~~~N 297 (297)
T d1wb9a1 290 -----AERAYTLN 297 (297)
T ss_dssp -----HHHHHHTT
T ss_pred -----HHHHHhcC
Confidence 77777665
|
| >d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1ewqa3 c.55.6.1 (A:121-266) DNA repair protein MutS, domain II {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|